Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 106 of 228
Found at i:30829427 original size:60 final size:59
Alignment explanation
Indices: 30829312--30829524 Score: 178
Period size: 60 Copynumber: 3.5 Consensus size: 59
30829302 TGGTGGTTTT
* * * * *
30829312 GGTGGTGGTGGAGGCACTGGTGGAGGAGGTGGT-TTAGGTGGG-GGTGCTGGTGGAGGCTTT
1 GGTGGTGGTGGAGG-ACTGGTGGAGGTGGTGGTCTT-GG-GGGTGGTGCGGGAGGAGGATTA
* * *
30829372 GGTGGTGGTGGAGGGCTAGGTGGCGGTGGTGGTCTTGGGGGTGGTGGGGGAGGAGGATTA
1 GGTGGTGGTGGAGGACT-GGTGGAGGTGGTGGTCTTGGGGGTGGTGCGGGAGGAGGATTA
* * * * * * * *
30829432 GGTGGTGGAGGAGGTCTTGGGGGTGGTGGAGGCCTAGGTGGTGGTGCGGGAGGAGGATTA
1 GGTGGTGGTGGAGGAC-TGGTGGAGGTGGTGGTCTTGGGGGTGGTGCGGGAGGAGGATTA
* * * *
30829492 GGTGGTGGAGGTGGTCTTGGTGGAGGTGCTGGT
1 GGTGGTGGTGGAGGAC-TGGTGGAGGTGGTGGT
30829525 GGTGGAGTTG
Statistics
Matches: 126, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
59 5 0.04
60 118 0.94
61 3 0.02
ACGTcount: A:0.10, C:0.06, G:0.59, T:0.25
Consensus pattern (59 bp):
GGTGGTGGTGGAGGACTGGTGGAGGTGGTGGTCTTGGGGGTGGTGCGGGAGGAGGATTA
Found at i:30829496 original size:78 final size:78
Alignment explanation
Indices: 30829414--30829580 Score: 210
Period size: 78 Copynumber: 2.1 Consensus size: 78
30829404 TCTTGGGGGT
* * * * *
30829414 GGTGGGGGAGGAGGAT-TAGGTGGTGGAGGAGGTCTTGGGGGTGGTGGAGGCCTAGGTGGTGGTG
1 GGTGGTGGAGGAGG-TCTAGGTGGAGGAGCAGGTCGTGGAGGTGGTGGAGGCCTAGGTGGTGGTG
30829478 CGGGAGGAGGATTA
65 CGGGAGGAGGATTA
* * * * * * *
30829492 GGTGGTGGAGGTGGTCTTGGTGGAGGTGCTGGTGGTGGAGTTGGTGGAGGCCTGGGTGGTGGTGC
1 GGTGGTGGAGGAGGTCTAGGTGGAGGAGCAGGTCGTGGAGGTGGTGGAGGCCTAGGTGGTGGTGC
30829557 GGGAGGAGGATTA
66 GGGAGGAGGATTA
30829570 GGTGGTGGAGG
1 GGTGGTGGAGG
30829581 TGGTGTTGGT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
77 1 0.01
78 75 0.99
ACGTcount: A:0.13, C:0.05, G:0.59, T:0.23
Consensus pattern (78 bp):
GGTGGTGGAGGAGGTCTAGGTGGAGGAGCAGGTCGTGGAGGTGGTGGAGGCCTAGGTGGTGGTGC
GGGAGGAGGATTA
Found at i:30829518 original size:24 final size:24
Alignment explanation
Indices: 30829491--30829541 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
30829481 GAGGAGGATT
* *
30829491 AGGTGGTGGAGGTGGTCTTGGTGG
1 AGGTGCTGGAGGTGGACTTGGTGG
* *
30829515 AGGTGCTGGTGGTGGAGTTGGTGG
1 AGGTGCTGGAGGTGGACTTGGTGG
30829539 AGG
1 AGG
30829542 CCTGGGTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.04, G:0.59, T:0.27
Consensus pattern (24 bp):
AGGTGCTGGAGGTGGACTTGGTGG
Found at i:30829527 original size:15 final size:15
Alignment explanation
Indices: 30829492--30829531 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
30829482 AGGAGGATTA
*
30829492 GGTGGTGGAGGTGGT
1 GGTGGTGGAGGTGCT
**
30829507 CTTGGTGGAGGTGCT
1 GGTGGTGGAGGTGCT
30829522 GGTGGTGGAG
1 GGTGGTGGAG
30829532 TTGGTGGAGG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.07, C:0.05, G:0.60, T:0.28
Consensus pattern (15 bp):
GGTGGTGGAGGTGCT
Found at i:30829549 original size:24 final size:24
Alignment explanation
Indices: 30829508--30829553 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
30829498 GGAGGTGGTC
*
30829508 TTGGTGGAGGTGCTGGTGGTGGAG
1 TTGGTGGAGGTCCTGGTGGTGGAG
30829532 TTGGTGGAGG-CCTGGGTGGTGG
1 TTGGTGGAGGTCCT-GGTGGTGG
30829554 TGCGGGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.07, C:0.07, G:0.59, T:0.28
Consensus pattern (24 bp):
TTGGTGGAGGTCCTGGTGGTGGAG
Found at i:30829671 original size:30 final size:29
Alignment explanation
Indices: 30829635--30829731 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 29
30829625 ACCACAAGCT
30829635 TGGAGGAGCAGGAGGAGGATTGGGCGGTGG
1 TGGAGGAGCAGGAGG-GGATTGGGCGGTGG
* * *
30829665 TGGAGGA-CTTGGCAGTGGCCA-TGGGCTG-GG
1 TGGAGGAGC-AGG-AG-GG-GATTGGGCGGTGG
* *
30829695 TGGAGGTGCAGGAGGTGGATTGGGTGGTGG
1 TGGAGGAGCAGGAGG-GGATTGGGCGGTGG
30829725 TGGAGGA
1 TGGAGGA
30829732 CTTGGCGGTG
Statistics
Matches: 50, Mismatches: 9, Indels: 16
0.67 0.12 0.21
Matches are distributed among these distances:
28 2 0.04
29 9 0.18
30 27 0.54
31 10 0.20
32 2 0.04
ACGTcount: A:0.16, C:0.08, G:0.57, T:0.19
Consensus pattern (29 bp):
TGGAGGAGCAGGAGGGGATTGGGCGGTGG
Found at i:30829708 original size:60 final size:60
Alignment explanation
Indices: 30829635--30829874 Score: 327
Period size: 60 Copynumber: 4.0 Consensus size: 60
30829625 ACCACAAGCT
* * * *
30829635 TGGAGGAGCAGGAGGAGGATTGGGCGGTGGTGGAGGACTTGGCAGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
30829695 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
* * * * * *
30829755 TGGGGGTGCAGGAGGTGGGTTGGGTGGTGGTGGAGGACTCGGTGGGGGCCATGGGCTTGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
* * * * * * *
30829815 TGGAGGTGCAGGAGGTGGACTAGGAGGGGGTGGAGGACTAGGTGGTGGCCAAGGGCTGGG
1 TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
30829875 AGGTGGAGGC
Statistics
Matches: 160, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 160 1.00
ACGTcount: A:0.14, C:0.10, G:0.57, T:0.19
Consensus pattern (60 bp):
TGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGGAGGACTTGGCGGTGGCCATGGGCTGGG
Found at i:30829742 original size:30 final size:30
Alignment explanation
Indices: 30829651--30829742 Score: 75
Period size: 30 Copynumber: 3.1 Consensus size: 30
30829641 AGCAGGAGGA
* *
30829651 GGATTGGGCGGTGGTGGAGGACTTGGCAGT
1 GGATTGGGTGGTGGTGGAGGACTTGGCGGT
* * *
30829681 GGCCA-TGGGCT-G-GGTGGAGGTGC-AGGAGGT
1 GG--ATTGGG-TGGTGGTGGAGG-ACTTGGCGGT
30829711 GGATTGGGTGGTGGTGGAGGACTTGGCGGT
1 GGATTGGGTGGTGGTGGAGGACTTGGCGGT
30829741 GG
1 GG
30829743 CCATGGGCTG
Statistics
Matches: 46, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
28 2 0.04
29 6 0.13
30 31 0.67
31 6 0.13
32 1 0.02
ACGTcount: A:0.12, C:0.10, G:0.57, T:0.22
Consensus pattern (30 bp):
GGATTGGGTGGTGGTGGAGGACTTGGCGGT
Found at i:30829757 original size:30 final size:30
Alignment explanation
Indices: 30829663--30829757 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
30829653 ATTGGGCGGT
*
30829663 GGTGGAGGACTTGGCAGTGGCCATGGGCTG
1 GGTGGAGGACTTGGCGGTGGCCATGGGCTG
* * *
30829693 GGTGGAGGTGC-AGGAGGTGG--ATTGGG-TGG
1 GGTGGAGG-ACTTGGCGGTGGCCA-TGGGCT-G
30829722 TGGTGGAGGACTTGGCGGTGGCCATGGGCTG
1 -GGTGGAGGACTTGGCGGTGGCCATGGGCTG
30829753 GGTGG
1 GGTGG
30829758 GGGTGCAGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
28 2 0.04
29 6 0.12
30 34 0.68
31 6 0.12
32 2 0.04
ACGTcount: A:0.12, C:0.12, G:0.56, T:0.21
Consensus pattern (30 bp):
GGTGGAGGACTTGGCGGTGGCCATGGGCTG
Found at i:30829772 original size:30 final size:30
Alignment explanation
Indices: 30829679--30829772 Score: 81
Period size: 30 Copynumber: 3.1 Consensus size: 30
30829669 GGACTTGGCA
*
30829679 GTGGCCATGGGCTGGGTGGAGGTGCAGGAG
1 GTGGCCATGGGCTGGGTGGGGGTGCAGGAG
* *
30829709 GTGG--ATTGGG-T-GGTGGTGGAG-GACTTGGCG
1 GTGGCCA-TGGGCTGGGTGG-GG-GTG-C-AGGAG
30829739 GTGGCCATGGGCTGGGTGGGGGTGCAGGAG
1 GTGGCCATGGGCTGGGTGGGGGTGCAGGAG
30829769 GTGG
1 GTGG
30829773 GTTGGGTGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
27 5 0.10
28 4 0.08
29 6 0.12
30 18 0.37
31 6 0.12
32 5 0.10
33 5 0.10
ACGTcount: A:0.11, C:0.11, G:0.59, T:0.20
Consensus pattern (30 bp):
GTGGCCATGGGCTGGGTGGGGGTGCAGGAG
Found at i:30829773 original size:24 final size:24
Alignment explanation
Indices: 30829746--30829791 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
30829736 GCGGTGGCCA
30829746 TGGGCTGGGTGGGGGTGCAGGAGG
1 TGGGCTGGGTGGGGGTGCAGGAGG
* * *
30829770 TGGGTTGGGTGGTGGTGGAGGA
1 TGGGCTGGGTGGGGGTGCAGGA
30829792 CTCGGTGGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.09, C:0.04, G:0.65, T:0.22
Consensus pattern (24 bp):
TGGGCTGGGTGGGGGTGCAGGAGG
Found at i:30829907 original size:120 final size:120
Alignment explanation
Indices: 30829663--30829907 Score: 280
Period size: 120 Copynumber: 2.0 Consensus size: 120
30829653 ATTGGGCGGT
* * * * * *
30829663 GGTGGAGGACTTGGCAGTGGCCATGGGCTGGGTGGAGGTGCAGGAGGTGGATTGGGTGGTGGTGG
1 GGTGGAGGACTCGGCAGGGGCCATGGGCTGGGTGGAGGTGCAGGAGGTGGACTAGGAGGGGGTGG
* * * * * **
30829728 AGGACTTGGCGGTGGCCATGGGCTGGGTGGGGGTGCAGGAGGTGGGTTGGGTGGT
66 AGGACTAGGCGGTGGCCAAGGGCTGGGAGGGGGTGCAGGAGGTAGGTGGGGTGCA
** *
30829783 GGTGGAGGACTCGGTGGGGGCCATGGGCTTGGTGGAGGTGCAGGAGGTGGACTAGGAGGGGGTGG
1 GGTGGAGGACTCGGCAGGGGCCATGGGCTGGGTGGAGGTGCAGGAGGTGGACTAGGAGGGGGTGG
* *
30829848 AGGACTAGGTGGTGGCCAAGGGCTGGGAGGTGGAG-GC-GGA-TTAGGTGGTGGTGCA
66 AGGACTAGGCGGTGGCCAAGGGCTGGGAGG-GG-GTGCAGGAGGTAGGTGG-GGTGCA
30829903 GGTGG
1 GGTGG
30829908 TGGAGCTGGA
Statistics
Matches: 104, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
119 5 0.05
120 94 0.90
121 4 0.04
122 1 0.01
ACGTcount: A:0.13, C:0.10, G:0.57, T:0.20
Consensus pattern (120 bp):
GGTGGAGGACTCGGCAGGGGCCATGGGCTGGGTGGAGGTGCAGGAGGTGGACTAGGAGGGGGTGG
AGGACTAGGCGGTGGCCAAGGGCTGGGAGGGGGTGCAGGAGGTAGGTGGGGTGCA
Found at i:30829930 original size:30 final size:30
Alignment explanation
Indices: 30829896--30829952 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
30829886 GATTAGGTGG
30829896 TGGTGCAGGTGGTGGAGCTGGAGGAGGGCT
1 TGGTGCAGGTGGTGGAGCTGGAGGAGGGCT
* *
30829926 TGGTGGAGGTGGTGGTGCTGGAGGAGG
1 TGGTGCAGGTGGTGGAGCTGGAGGAGG
30829953 AGCTGGAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.12, C:0.07, G:0.60, T:0.21
Consensus pattern (30 bp):
TGGTGCAGGTGGTGGAGCTGGAGGAGGGCT
Found at i:30829937 original size:42 final size:42
Alignment explanation
Indices: 30829890--30829994 Score: 156
Period size: 42 Copynumber: 2.5 Consensus size: 42
30829880 GAGGCGGATT
* *
30829890 AGGTGGTGGTGCAGGTGGTGGAGCTGGAGGAGGGCTTGGTGG
1 AGGTGGTGGTGCTGGTGGTGGAGCTGGAGGAGGGCTCGGTGG
* *
30829932 AGGTGGTGGTGCTGGAGGAGGAGCTGGAGGAGGGCTCGGTGG
1 AGGTGGTGGTGCTGGTGGTGGAGCTGGAGGAGGGCTCGGTGG
* *
30829974 AGTTGGTGGTGGTGGTGGTGG
1 AGGTGGTGGTGCTGGTGGTGG
30829995 TGGAGGTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.11, C:0.07, G:0.60, T:0.22
Consensus pattern (42 bp):
AGGTGGTGGTGCTGGTGGTGGAGCTGGAGGAGGGCTCGGTGG
Found at i:30829964 original size:30 final size:30
Alignment explanation
Indices: 30829902--30829964 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
30829892 GTGGTGGTGC
*
30829902 AGGTGGTGGAGCTGGAGGAGGGCTTGGTGG
1 AGGTGGTGGAGCTGGAGGAGGGCTTGGAGG
*
30829932 AGGTGGTGGTGCTGGAGGAGGAGC-TGGAGG
1 AGGTGGTGGAGCTGGAGGAGG-GCTTGGAGG
30829962 AGG
1 AGG
30829965 GCTCGGTGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.16, C:0.06, G:0.60, T:0.17
Consensus pattern (30 bp):
AGGTGGTGGAGCTGGAGGAGGGCTTGGAGG
Found at i:30830026 original size:30 final size:30
Alignment explanation
Indices: 30829992--30830054 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
30829982 GTGGTGGTGG
**
30829992 TGGTGGAGGTTTTGGAGGTGGAGGAGGATT
1 TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
* * *
30830022 TGGTGGTGGTGGTGGAGTTGGGGGAGGATT
1 TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
30830052 TGG
1 TGG
30830055 AGTTGGTGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.13, C:0.00, G:0.57, T:0.30
Consensus pattern (30 bp):
TGGTGGAGGTGGTGGAGGTGGAGGAGGATT
Found at i:30830042 original size:18 final size:18
Alignment explanation
Indices: 30829983--30830066 Score: 62
Period size: 18 Copynumber: 4.5 Consensus size: 18
30829973 GAGTTGGTGG
30829983 TGGTGGTGGTGGTGGAGGTTT
1 TGGTGGTGGTGGTGGA-G--T
* * * *
30830004 TGGAGGTGGAGGAGGATT
1 TGGTGGTGGTGGTGGAGT
30830022 TGGTGGTGGTGGTGGAGT
1 TGGTGGTGGTGGTGGAGT
* * *
30830040 TGGGGGAGGAT-TTGGAGT
1 TGGTGGTGG-TGGTGGAGT
30830058 TGGTGGTGG
1 TGGTGGTGG
30830067 ATTTGGCAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
18 35 0.71
19 1 0.02
21 13 0.27
ACGTcount: A:0.11, C:0.00, G:0.58, T:0.31
Consensus pattern (18 bp):
TGGTGGTGGTGGTGGAGT
Found at i:30830062 original size:30 final size:30
Alignment explanation
Indices: 30830004--30830072 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
30829994 GTGGAGGTTT
* *
30830004 TGGAGGTGGAGGAGGATTTGGTGGTGGTGG
1 TGGAGTTGGAGGAGGATTTGGAGGTGGTGG
* *
30830034 TGGAGTTGGGGGAGGATTTGGAGTTGGTGG
1 TGGAGTTGGAGGAGGATTTGGAGGTGGTGG
*
30830064 TGGATTTGG
1 TGGAGTTGG
30830073 CAAAGGTGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.13, C:0.00, G:0.57, T:0.30
Consensus pattern (30 bp):
TGGAGTTGGAGGAGGATTTGGAGGTGGTGG
Found at i:30830068 original size:18 final size:18
Alignment explanation
Indices: 30830021--30830072 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
30830011 GGAGGAGGAT
*
30830021 TTGGTGGTGG-TGGTGGAG
1 TTGGTGGTGGAT-TTGGAG
* *
30830039 TTGGGGGAGGATTTGGAG
1 TTGGTGGTGGATTTGGAG
30830057 TTGGTGGTGGATTTGG
1 TTGGTGGTGGATTTGG
30830073 CAAAGGTGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.10, C:0.00, G:0.56, T:0.35
Consensus pattern (18 bp):
TTGGTGGTGGATTTGGAG
Found at i:30836372 original size:50 final size:50
Alignment explanation
Indices: 30836312--30836496 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 50
30836302 TACTGCTAAT
* * * ** * *
30836312 GCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAAC
** * *
30836362 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAAC
*
30836412 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTA-GTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATAGGTGCCAAC
* *
30836462 GCCATGTCCTAGACATGATCTTACATGGGACCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
30836497 TATAATCTCA
Statistics
Matches: 117, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
50 116 0.99
51 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAAC
Found at i:30847787 original size:28 final size:28
Alignment explanation
Indices: 30847749--30847820 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
30847739 AAAAATAAAA
* *
30847749 ATTTACTAAAATGT-TATAACTTTTTTTT
1 ATTTACCAAAATATATATAA-TTTTTTTT
30847777 ATTTACCAAAATATATATAATTTTTTTT
1 ATTTACCAAAATATATATAATTTTTTTT
30847805 ATTTACCAAAATATAT
1 ATTTACCAAAATATAT
30847821 CAAAAAAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 36 0.88
29 5 0.12
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.51
Consensus pattern (28 bp):
ATTTACCAAAATATATATAATTTTTTTT
Found at i:30847958 original size:4 final size:4
Alignment explanation
Indices: 30847949--30848075 Score: 72
Period size: 4 Copynumber: 31.0 Consensus size: 4
30847939 GAAGGAGAGG
* *
30847949 GAAA GAAA GAAA GAAA GGAGAG GAAA GAAA G-AA -AAA GAAG GAAA GAAA
1 GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
30847997 TGGAAA GGAGAA GAGAA -AAA -AAA GAAA GAAA G-AA G-AA G-AA GAAAA
1 --GAAA -GA-AA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA
*
30848042 GGAAAA GAGAA GAAA -AAA GAAA GAAA GAAG GAAA
1 -G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA
30848076 AAAAAGGAAA
Statistics
Matches: 104, Mismatches: 6, Indels: 26
0.76 0.04 0.19
Matches are distributed among these distances:
3 21 0.20
4 52 0.50
5 19 0.18
6 12 0.12
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:30847973 original size:22 final size:22
Alignment explanation
Indices: 30847940--30848106 Score: 94
Period size: 22 Copynumber: 8.0 Consensus size: 22
30847930 GGGGGGGCAG
30847940 AAGGAGAGGGAAAGAAAGAAAGA
1 AAGGAGA-GGAAAGAAAGAAAGA
30847963 AAGGAGAGGAAAGAAAG-AA-A
1 AAGGAGAGGAAAGAAAGAAAGA
30847983 AA-GA-AGGAAAGAAATGGAAAG-
1 AAGGAGAGGAAAGAAA--GAAAGA
* * * *
30848004 GAGAAGAGAAAAAAAAGAAAGA
1 AAGGAGAGGAAAGAAAGAAAGA
* * *
30848026 AAGAAGAAG-AAG-AA-AAGGA
1 AAGGAGAGGAAAGAAAGAAAGA
* *
30848045 AAAGAGAAGAAA-AAAGAAAGA
1 AAGGAGAGGAAAGAAAGAAAGA
*
30848066 AA-GA-AGGAAA-AAA-AAGGA
1 AAGGAGAGGAAAGAAAGAAAGA
30848084 AAGGAGAAGAGAAA-AAA-AAAGA
1 AAGGAG-AG-GAAAGAAAGAAAGA
30848106 A
1 A
30848107 GAAGAAGAGG
Statistics
Matches: 115, Mismatches: 15, Indels: 29
0.72 0.09 0.18
Matches are distributed among these distances:
18 16 0.14
19 23 0.20
20 12 0.10
21 20 0.17
22 29 0.25
23 15 0.13
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.01
Consensus pattern (22 bp):
AAGGAGAGGAAAGAAAGAAAGA
Found at i:30847974 original size:18 final size:18
Alignment explanation
Indices: 30847953--30848007 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
30847943 GAGAGGGAAA
30847953 GAAAGAAAGAAAGGAGAG
1 GAAAGAAAGAAAGGAGAG
*
30847971 GAAAGAAAGAAA-AAGAAG
1 GAAAGAAAGAAAGGAG-AG
30847989 GAAAGAAATGGAAAGGAGA
1 GAAAGAAA--GAAAGGAGA
30848008 AGAGAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 2 0.06
18 22 0.71
20 5 0.16
21 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (18 bp):
GAAAGAAAGAAAGGAGAG
Found at i:30848043 original size:39 final size:38
Alignment explanation
Indices: 30847969--30848137 Score: 144
Period size: 39 Copynumber: 4.6 Consensus size: 38
30847959 AAGAAAGGAG
* * *
30847969 AGGAAAGA-AAGAAAAAGAAGGAAAGAA-ATG--G-AA
1 AGGAAAGAGAAAAAAAAGAAAGAAAGAAGAAGAAGAAA
30848002 AGGAGAAGAGAAAAAAAAGAAAGAAAGAAGAAGAAGAAA
1 AGGA-AAGAGAAAAAAAAGAAAGAAAGAAGAAGAAGAAA
30848041 AGGAAAAGAGAAGAAAAAAGAAAGAAAGAAGGAA-AA-AAA
1 AGG-AAAGAGAA-AAAAAAGAAAGAAAGAA-GAAGAAGAAA
* **
30848080 AGGAAAGGAGAAGAGAAAAAAAAAG-AAGAAGAAG-AGGGA
1 AGGAAA-GAGAA-A-AAAAAGAAAGAAAGAAGAAGAAGAAA
30848119 AGG-AAG-GAAAAAAAAGAAA
1 AGGAAAGAGAAAAAAAAGAAA
30848138 AAAAAGGTAA
Statistics
Matches: 116, Mismatches: 7, Indels: 25
0.78 0.05 0.17
Matches are distributed among these distances:
33 4 0.03
34 12 0.10
35 18 0.16
36 5 0.04
37 1 0.01
38 10 0.09
39 34 0.29
40 29 0.25
41 3 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.01
Consensus pattern (38 bp):
AGGAAAGAGAAAAAAAAGAAAGAAAGAAGAAGAAGAAA
Found at i:30848052 original size:44 final size:43
Alignment explanation
Indices: 30847972--30848143 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 43
30847962 AAAGGAGAGG
* *
30847972 AAAGAAAGAAA-AAGAAGGAAAGAAATGGAAAGGAGAAGAGAAAAA
1 AAAGAAAGAAAGAAGAA-G-AAGAAAAGGAAAAGAGAA-AGAAAAA
30848017 AAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAG-AAG--AAA
1 AAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAAGAAAAA
*
30848057 AAAGAAAGAAAGAAGGAA-AA-AAAAGGAAAGGAGAAGAGAAAAA
1 AAAGAAAGAAAGAA-GAAGAAGAAAAGGAAAAGAGAA-AGAAAAA
* *
30848100 AAA-AGAAG-AAGAAGAGGGAAG-GAAGGAAAA-A-AAAGAAAAA
1 AAAGA-AAGAAAGAAGA-AGAAGAAAAGGAAAAGAGAAAGAAAAA
30848140 AAAG
1 AAAG
30848144 GTAATTTTAT
Statistics
Matches: 110, Mismatches: 6, Indels: 26
0.77 0.04 0.18
Matches are distributed among these distances:
39 12 0.11
40 30 0.27
41 9 0.08
42 9 0.08
43 19 0.17
44 14 0.13
45 12 0.11
46 5 0.05
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (43 bp):
AAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAAGAAAAA
Found at i:30848079 original size:63 final size:62
Alignment explanation
Indices: 30847954--30848142 Score: 149
Period size: 63 Copynumber: 3.0 Consensus size: 62
30847944 AGAGGGAAAG
* * * *
30847954 AAAGAAAGAAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAATGGAAAGGAGAAGAGAAAAA
1 AAAGAAAGAAAGAAGAAGAAAGAAAGAAAAAGAAGGAAAGAAA-GGAAAGAAGAAGAAAAAAA
*
30848017 AAAGAAAGAAAGAAGAAG-AAGAAAAGGAAAAGAGAA-GAAA-AAA-GAAAGAAAGAAGGAAAAA
1 AAAGAAAGAAAGAAGAAGAAAG-AAA-GAAAA-AGAAGGAAAGAAAGGAAAG-AAGAAGAAAAAA
30848078 A
62 A
* * * * * *
30848079 AAGGAAAGGAGAAG-AGAA-AAAAAAAGAAGAAGAAGAGGGAAGGAAGGAAA-AAAAAGAAAAAA
1 AAAGAAA-GA-AAGAAGAAGAAAGAAAGAAAAAG-A-AGGAAAGAAAGGAAAGAAGAAGAAAAAA
30848141 A
62 A
30848142 A
1 A
30848143 GGTAATTTTA
Statistics
Matches: 102, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
60 2 0.02
61 10 0.10
62 23 0.23
63 45 0.44
64 14 0.14
65 8 0.08
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (62 bp):
AAAGAAAGAAAGAAGAAGAAAGAAAGAAAAAGAAGGAAAGAAAGGAAAGAAGAAGAAAAAAA
Found at i:30848143 original size:83 final size:84
Alignment explanation
Indices: 30847972--30848140 Score: 231
Period size: 83 Copynumber: 2.0 Consensus size: 84
30847962 AAAGGAGAGG
* *
30847972 AAAGAAAGAAAAAGAAGGAAAGAAATGGAAAGGAGAAGAGAAAAAAAAGAAAGAAAGAAGAAGAA
1 AAAGAAAG-AAAAGAAGGAAAAAAAAGGAAAGGAGAAGAGAAAAAAAAGAAAGAAAGAAGAAGAA
*
30848037 GAAAAGGAAAAGAGAAGAAA
65 GAAAAGGAAAAAAGAAGAAA
*
30848057 AAAGAAAG-AAAGAAGGAAAAAAAAGGAAAGGAGAAGAGAAAAAAAA-AGAAG-AAGAAGAGGGA
1 AAAGAAAGAAAAGAAGGAAAAAAAAGGAAAGGAGAAGAGAAAAAAAAGA-AAGAAAGAAGA-AGA
*
30848119 AG-GAAGGAAAAAA-AAGAAA
64 AGAAAAGGAAAAAAGAAGAAA
30848138 AAA
1 AAA
30848141 AAGGTAATTT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
81 9 0.12
82 17 0.22
83 43 0.56
85 8 0.10
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (84 bp):
AAAGAAAGAAAAGAAGGAAAAAAAAGGAAAGGAGAAGAGAAAAAAAAGAAAGAAAGAAGAAGAAG
AAAAGGAAAAAAGAAGAAA
Found at i:30848684 original size:15 final size:15
Alignment explanation
Indices: 30848666--30848696 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30848656 ATGTACTGAA
*
30848666 AAAATATAAAATAAT
1 AAAATACAAAATAAT
30848681 AAAATACAAAATAAT
1 AAAATACAAAATAAT
30848696 A
1 A
30848697 TAGTTTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATACAAAATAAT
Found at i:30852775 original size:3 final size:3
Alignment explanation
Indices: 30852767--30852795 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
30852757 TCTTAATACT
30852767 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
30852796 TAATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:30853091 original size:27 final size:27
Alignment explanation
Indices: 30853035--30853093 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
30853025 CTAATCAATA
****
30853035 TGGCACCATTGGTGCCACCAATGGTTT
1 TGGCACCATTGGTGCCACCAATCCCAT
*
30853062 TGGCACCTTTGGTGCCACCAATCCCAT
1 TGGCACCATTGGTGCCACCAATCCCAT
30853089 TGGCA
1 TGGCA
30853094 TGACCAAGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.27
Consensus pattern (27 bp):
TGGCACCATTGGTGCCACCAATCCCAT
Found at i:30853186 original size:27 final size:27
Alignment explanation
Indices: 30853152--30853219 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
30853142 TTTGTTTTTT
30853152 TATATATTTTGGTAAATAAAAAAATTA
1 TATATATTTTGGTAAATAAAAAAATTA
*
30853179 TATATATTTTGGTAAATAAAAAAGTTA
1 TATATATTTTGGTAAATAAAAAAATTA
30853206 TA-ATATTTTGGTAA
1 TATATATTTTGGTAA
30853220 TTTTTTTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 12 0.30
27 28 0.70
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (27 bp):
TATATATTTTGGTAAATAAAAAAATTA
Found at i:30854187 original size:13 final size:13
Alignment explanation
Indices: 30854132--30854192 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
30854122 TTTAAACAAA
*
30854132 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
*
30854145 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* * *
30854158 ACTTTTCCACAGT
1 ACTTTTCAAAAGC
30854171 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
30854184 ACTTTTCAA
1 ACTTTTCAA
30854193 GTAGTTTTGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:30856169 original size:24 final size:24
Alignment explanation
Indices: 30856117--30856170 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
30856107 GTGAGCTAAT
* *
30856117 AATT-TTGGAGGTTATAATTTTAC
1 AATTCTTGGAGGTTAGAATATTAC
* *
30856140 ATTTCTTGGAGGTTAGAATATTAG
1 AATTCTTGGAGGTTAGAATATTAC
30856164 AATTCTT
1 AATTCTT
30856171 TCCACTAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.30, C:0.06, G:0.19, T:0.46
Consensus pattern (24 bp):
AATTCTTGGAGGTTAGAATATTAC
Found at i:30856945 original size:21 final size:21
Alignment explanation
Indices: 30856919--30856960 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
30856909 CCAATTTAAT
30856919 GAAATA-ATTTTTCATAAATAA
1 GAAATACATTTTT-ATAAATAA
30856940 GAAATACATTTTTATAAATAA
1 GAAATACATTTTTATAAATAA
30856961 TTTTCATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
GAAATACATTTTTATAAATAA
Found at i:30857325 original size:26 final size:28
Alignment explanation
Indices: 30857265--30857331 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
30857255 TTCAAATCAA
* *
30857265 TTTGAGTGTTTGCTTTTTGTTTCTTTTT
1 TTTGAGTGTTTGCTTTTTGTGTCTTTCT
30857293 TTCTGAGTGTTTGCTTTTT-TGT-TTTCT
1 TT-TGAGTGTTTGCTTTTTGTGTCTTTCT
30857320 TTTGAGTGTTTG
1 TTTGAGTGTTTG
30857332 TGAGTTTGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 10 0.28
27 6 0.17
28 4 0.11
29 16 0.44
ACGTcount: A:0.04, C:0.07, G:0.21, T:0.67
Consensus pattern (28 bp):
TTTGAGTGTTTGCTTTTTGTGTCTTTCT
Found at i:30859183 original size:62 final size:62
Alignment explanation
Indices: 30859054--30859187 Score: 169
Period size: 62 Copynumber: 2.2 Consensus size: 62
30859044 GGCTTGTGTT
* * * *
30859054 CAGGCCATGTAACTCACTATTTGTGGTACAAAGCCACACGACCAGGGACATAGGCATGTGCC
1 CAGGCCGTGTAACTCACTATTTGTGGTACAAAGCCACACGACCAAGGACACAGGCATGTACC
* * * * **
30859116 CAGGCCGTGTAACTCACTGTTTGTGGTACAAATCCACACGGCCAAGGACACGGGTGTGTACC
1 CAGGCCGTGTAACTCACTATTTGTGGTACAAAGCCACACGACCAAGGACACAGGCATGTACC
*
30859178 TAGGCCGTGT
1 CAGGCCGTGT
30859188 GAGTCATACG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (62 bp):
CAGGCCGTGTAACTCACTATTTGTGGTACAAAGCCACACGACCAAGGACACAGGCATGTACC
Found at i:30864407 original size:50 final size:50
Alignment explanation
Indices: 30864328--30864570 Score: 328
Period size: 50 Copynumber: 4.9 Consensus size: 50
30864318 CATATAGGTA
* * * *
30864328 AAGAGGACCCATGTCAGGCCATGTTTGGGACATGGCGTTGGCACCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
*
30864378 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
* * * *
30864428 AAGAGGTCCCATGTAAGACCATATCTGGAACAT-GCGTTGGCATCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
* * *
30864477 TAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
* * *
30864527 GAGAGGTCTC-TCGTAAGACCATGTATGGGACATGGCGTTGGCAC
1 AAGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCGTTGGCAC
30864571 GACATGGCAT
Statistics
Matches: 171, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 45 0.26
50 126 0.74
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
Found at i:30864500 original size:99 final size:100
Alignment explanation
Indices: 30864328--30864570 Score: 328
Period size: 99 Copynumber: 2.4 Consensus size: 100
30864318 CATATAGGTA
* * * *
30864328 AAGAGGACCCATGTCAGGCCATGTTTGGGACATGGCGTTGGCACCAAGATAAGAGGTCCCATGTA
1 AAGAGGTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCAAGATAAGAGGTCCCATGTA
* * *
30864393 AGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
66 AGACCATGTCTAGGACATGGCATTGGCACCAAGAT
* * * * * *
30864428 AAGAGGTCCCATGTAAGACCATATCTGGAACAT-GCGTTGGCATCGAGATTAGAGGTCCCATGTA
1 AAGAGGTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCAAGATAAGAGGTCCCATGTA
30864492 AGACCATGTCTAGGACATGGCATTGGCACCAAGAT
66 AGACCATGTCTAGGACATGGCATTGGCACCAAGAT
* *
30864527 GAGAGGTCTC-TCGTAAGACCATGTATGGGACATGGCGTTGGCAC
1 AAGAGGTCCCAT-GTAAGACCATGTATGGGACATGGCGTTGGCAC
30864571 GACATGGCAT
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 1 0.01
99 86 0.70
100 36 0.29
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (100 bp):
AAGAGGTCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCAAGATAAGAGGTCCCATGTA
AGACCATGTCTAGGACATGGCATTGGCACCAAGAT
Found at i:30879224 original size:49 final size:50
Alignment explanation
Indices: 30879163--30879305 Score: 216
Period size: 49 Copynumber: 2.9 Consensus size: 50
30879153 CATTTGGGTA
* * *
30879163 AAGAGTTCCCATGTAAGGCCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
30879213 AAGAGGT-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** *
30879262 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGACGTTGGCAC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
30879306 GACATGGCAT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
49 46 0.54
50 39 0.46
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.20
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:30886185 original size:32 final size:32
Alignment explanation
Indices: 30886148--30886213 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
30886138 ATGTACCATC
*
30886148 TATACAGATCATAAGAGCATCAAGTATCTTCT
1 TATACAGACCATAAGAGCATCAAGTATCTTCT
30886180 TATACAGACCATAAGAGCATCAAGTATCTTCT
1 TATACAGACCATAAGAGCATCAAGTATCTTCT
30886212 TA
1 TA
30886214 CGTAGAAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (32 bp):
TATACAGACCATAAGAGCATCAAGTATCTTCT
Found at i:30893848 original size:16 final size:16
Alignment explanation
Indices: 30893814--30893856 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
30893804 AATTGAAAGG
*
30893814 AATAT-ATATATGTGTA
1 AATATGATA-ATGTGCA
*
30893830 AATGTGATAATGTGCA
1 AATATGATAATGTGCA
30893846 AATATGATAAT
1 AATATGATAAT
30893857 TGGATATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.37
Consensus pattern (16 bp):
AATATGATAATGTGCA
Found at i:30899191 original size:17 final size:17
Alignment explanation
Indices: 30899169--30899201 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30899159 CAAAATTGGG
30899169 TGGAAAATCAAGAAAAA
1 TGGAAAATCAAGAAAAA
*
30899186 TGGAAAATTAAGAAAA
1 TGGAAAATCAAGAAAA
30899202 TACCCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.03, G:0.18, T:0.15
Consensus pattern (17 bp):
TGGAAAATCAAGAAAAA
Found at i:30902442 original size:36 final size:36
Alignment explanation
Indices: 30902390--30902462 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
30902380 TTAGCTGCAC
*
30902390 TTTAAGTTATACAATAATGCTCATTGAGCTATCATA
1 TTTAAGTTATAAAATAATGCTCATTGAGCTATCATA
*
30902426 TTTAAGTTCTAAAATAATGCTCATTGAGCTATCATA
1 TTTAAGTTATAAAATAATGCTCATTGAGCTATCATA
30902462 T
1 T
30902463 ATTAGATCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (36 bp):
TTTAAGTTATAAAATAATGCTCATTGAGCTATCATA
Found at i:30915671 original size:18 final size:18
Alignment explanation
Indices: 30915648--30915683 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
30915638 CTAACATCAG
30915648 TAACTGCTAACAACTAAC
1 TAACTGCTAACAACTAAC
*
30915666 TAACTGCTAACAGCTAAC
1 TAACTGCTAACAACTAAC
30915684 CATTACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.28, G:0.08, T:0.22
Consensus pattern (18 bp):
TAACTGCTAACAACTAAC
Found at i:30917352 original size:21 final size:22
Alignment explanation
Indices: 30917328--30917379 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
30917318 TCAGGTATTA
30917328 TTCAAATTGTTATGT-GTGTTG
1 TTCAAATTGTTATGTGGTGTTG
* ** *
30917349 TTCAAGTTCCTATTTGGTGTTG
1 TTCAAATTGTTATGTGGTGTTG
30917371 TTC-AATTGT
1 TTCAAATTGT
30917380 AATTTATGTG
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.17, C:0.10, G:0.21, T:0.52
Consensus pattern (22 bp):
TTCAAATTGTTATGTGGTGTTG
Found at i:30922021 original size:20 final size:20
Alignment explanation
Indices: 30921951--30922055 Score: 86
Period size: 20 Copynumber: 5.2 Consensus size: 20
30921941 TGTAAAAAAA
*
30921951 TTTCGATGCCCCTAATTTGCAC
1 TTTCG-TGCCCCTGA-TTGCAC
* *
30921973 TCTAGTGCCCCTGATTGCAC
1 TTTCGTGCCCCTGATTGCAC
* *
30921993 TTTCATGCCCCTTATTGCAC
1 TTTCGTGCCCCTGATTGCAC
* *
30922013 -TTCGGTGCCCTTGATTGTAC
1 TTTC-GTGCCCCTGATTGCAC
* * *
30922033 TTTCTTGCCACTGTTTGCAC
1 TTTCGTGCCCCTGATTGCAC
30922053 TTT
1 TTT
30922056 GGATCCTCGG
Statistics
Matches: 65, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
19 3 0.05
20 48 0.74
21 11 0.17
22 3 0.05
ACGTcount: A:0.13, C:0.30, G:0.16, T:0.40
Consensus pattern (20 bp):
TTTCGTGCCCCTGATTGCAC
Found at i:30922021 original size:40 final size:41
Alignment explanation
Indices: 30921951--30922054 Score: 106
Period size: 40 Copynumber: 2.5 Consensus size: 41
30921941 TGTAAAAAAA
*
30921951 TTTCGATGCCCCTAATTTGCAC-TCTAGTGCCCCTGATTGCAC
1 TTTC-ATGCCCCTTA-TTGCACTTCTAGTGCCCCTGATTGCAC
* * *
30921993 TTTCATGCCCCTTATTGCACTTC-GGTGCCCTTGATTGTAC
1 TTTCATGCCCCTTATTGCACTTCTAGTGCCCCTGATTGCAC
* *
30922033 TTTCTTGCCACTGT-TTGCACTT
1 TTTCATGCCCCT-TATTGCACTT
30922055 TGGATCCTCG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
40 38 0.70
41 12 0.22
42 4 0.07
ACGTcount: A:0.13, C:0.31, G:0.16, T:0.39
Consensus pattern (41 bp):
TTTCATGCCCCTTATTGCACTTCTAGTGCCCCTGATTGCAC
Found at i:30935297 original size:79 final size:81
Alignment explanation
Indices: 30935161--30935345 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
30935151 TTGAATGATG
* *
30935161 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
30935225 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
30935240 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
30935302 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
30935320 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30935346 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:30935359 original size:40 final size:40
Alignment explanation
Indices: 30935162--30935345 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
30935152 TGAATGATGT
* * * *
30935162 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
30935202 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
30935242 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
30935280 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
30935321 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
30935346 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:30935367 original size:79 final size:79
Alignment explanation
Indices: 30935214--30935368 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
30935204 GGACTAAGAT
* * **
30935214 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
30935279 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
30935293 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
30935356 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
30935369 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:30943135 original size:39 final size:40
Alignment explanation
Indices: 30943036--30943219 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
30943026 TTGAATGATG
* * *
30943036 TCCGGGC-AAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
30943076 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
30943115 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
30943154 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
30943193 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30943220 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 42 0.34
40 72 0.59
41 8 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:30943241 original size:79 final size:79
Alignment explanation
Indices: 30943088--30943252 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
30943078 GGACTAAGAT
* **
30943088 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
30943153 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
30943167 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
30943230 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
30943246 CCGAAGG
1 CCGAAGG
30943253 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:30959097 original size:40 final size:40
Alignment explanation
Indices: 30958997--30959168 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
30958987 GCTCCTCGTT
* * *
30958997 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
30959037 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30959076 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
30959116 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30959156 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30959169 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30959181 original size:80 final size:79
Alignment explanation
Indices: 30958997--30959221 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
30958987 GCTCCTCGTT
* * * * *
30958997 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30959061 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
30959076 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
30959141 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
30959156 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30959220 GA
63 GA
30959222 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:30959230 original size:41 final size:41
Alignment explanation
Indices: 30959153--30959230 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30959143 TTTGTATCTC
* * *
30959153 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30959194 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30959231 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30966624 original size:40 final size:40
Alignment explanation
Indices: 30966524--30966694 Score: 213
Period size: 39 Copynumber: 4.3 Consensus size: 40
30966514 GCTCCTCGTT
* * *
30966524 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
30966564 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30966603 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
30966643 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
30966682 CAAATGCCTTCGG
1 CAAATGCCTTCGG
30966695 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 66 0.56
40 51 0.44
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:30966707 original size:79 final size:79
Alignment explanation
Indices: 30966524--30966747 Score: 231
Period size: 79 Copynumber: 2.8 Consensus size: 79
30966514 GCTCCTCGTT
* * * * *
30966524 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
30966588 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* *
30966603 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
30966667 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
30966682 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
30966746 GA
63 GA
30966748 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 85 0.70
80 32 0.26
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:30966756 original size:41 final size:41
Alignment explanation
Indices: 30966679--30966756 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
30966669 TTTGTATCTC
* * *
30966679 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
30966720 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
30966757 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:30971269 original size:20 final size:20
Alignment explanation
Indices: 30971231--30971279 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
30971221 ATCATGGTCT
*
30971231 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
*
30971250 TCT-CTTACTTGTTTATTTAC
1 T-TGCTTACTTGTTTACTTAC
30971270 TTGCTTACTT
1 TTGCTTACTT
30971280 AAATAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.12, C:0.22, G:0.06, T:0.59
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:30971727 original size:56 final size:51
Alignment explanation
Indices: 30971485--30971727 Score: 215
Period size: 50 Copynumber: 4.7 Consensus size: 51
30971475 TGATAATAAC
* * ** * * *
30971485 ATGCCAAAGCCATGTCCCAGATATGGTCTTACATGGGATGTTTCCT-GT-A
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCA
* * * ** *
30971534 CTGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATA-TCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCA
* ***
30971584 ATGCCCATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCAT-CTCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCA
* * * *
30971634 GTGCCAATGCCATGTCCCAGACATGGCCATACGTGGGACCTCTCATAACCTCAATA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A-CTC---A
*
30971690 ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
30971728 TCTCATTCCC
Statistics
Matches: 156, Mismatches: 29, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
49 40 0.26
50 79 0.51
53 3 0.02
56 34 0.22
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (51 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCA
Found at i:30971986 original size:21 final size:21
Alignment explanation
Indices: 30971935--30971976 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
30971925 TCGGTACAAA
30971935 ATACGATCAAATCTATCAACT
1 ATACGATCAAATCTATCAACT
30971956 ATACGATCAAATCTATCAACT
1 ATACGATCAAATCTATCAACT
30971977 TAGTCCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.29
Consensus pattern (21 bp):
ATACGATCAAATCTATCAACT
Found at i:30985751 original size:160 final size:160
Alignment explanation
Indices: 30985487--30985807 Score: 633
Period size: 160 Copynumber: 2.0 Consensus size: 160
30985477 AGTGACATTT
30985487 TTCCCAGTTAAGTACTAGATTAGTTTCTTCGTATCTCTGTAATAATTCTCAAGATTACCTAGACA
1 TTCCCAGTTAAGTACTAGATTAGTTTCTTCGTATCTCTGTAATAATTCTCAAGATTACCTAGACA
30985552 CTCTTGTAAAGAGTCTTCATAAAATGAGAAATCATCCATGAATACATCCAAACCTTCTTCCAACA
66 CTCTTGTAAAGAGTCTTCATAAAATGAGAAATCATCCATGAATACATCCAAACCTTCTTCCAACA
*
30985617 TATCAGCAAAAATGGAAGTCATACATTGCA
131 TATCAGCAAAAATGGAAGTCATACATCGCA
30985647 TTCCCAGTTAAGTACTAGATTAGTTTCTTCGTATCTCTGTAATAATTCTCAAGATTACCTAGACA
1 TTCCCAGTTAAGTACTAGATTAGTTTCTTCGTATCTCTGTAATAATTCTCAAGATTACCTAGACA
30985712 CTCTTGTAAAGAGTCTTCATAAAATGAGAAATCATCCATGAATACATCCAAACCTTCTTCCAACA
66 CTCTTGTAAAGAGTCTTCATAAAATGAGAAATCATCCATGAATACATCCAAACCTTCTTCCAACA
30985777 TATCAGCAAAAATGGAAGTCATACATCGCA
131 TATCAGCAAAAATGGAAGTCATACATCGCA
30985807 T
1 T
30985808 AGAGGTTGTT
Statistics
Matches: 160, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 160 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (160 bp):
TTCCCAGTTAAGTACTAGATTAGTTTCTTCGTATCTCTGTAATAATTCTCAAGATTACCTAGACA
CTCTTGTAAAGAGTCTTCATAAAATGAGAAATCATCCATGAATACATCCAAACCTTCTTCCAACA
TATCAGCAAAAATGGAAGTCATACATCGCA
Found at i:30994020 original size:23 final size:23
Alignment explanation
Indices: 30993994--30994048 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
30993984 TTCCCTCCCT
30993994 TAGATAGTCTT-GAATGGACTTCC
1 TAGATAGTCTTAG-ATGGACTTCC
30994017 TAGATAGTCTTAGATGGACTTCC
1 TAGATAGTCTTAGATGGACTTCC
*
30994040 CAGATAGTC
1 TAGATAGTC
30994049 CTTGGTAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (23 bp):
TAGATAGTCTTAGATGGACTTCC
Found at i:30994203 original size:28 final size:28
Alignment explanation
Indices: 30994127--30994238 Score: 75
Period size: 28 Copynumber: 4.0 Consensus size: 28
30994117 ACATTCCATG
* * * *
30994127 TAAGATAGTCCTTAGCAGACT-CCTCGCG
1 TAAGACAGTCCTTGGCAGACTCCCT-ACA
* * *
30994155 TAAGACAATCCTTGTCGGACTCCCTACA
1 TAAGACAGTCCTTGGCAGACTCCCTACA
*
30994183 TAAGACAGTCCTTGGCAGACTTCCC-ACT
1 TAAGACAGTCCTTGGCAGAC-TCCCTACA
* ** * *
30994211 TAAGATAGTTTTTGGCGGACTCCGTACA
1 TAAGACAGTCCTTGGCAGACTCCCTACA
30994239 CCACATCACA
Statistics
Matches: 64, Mismatches: 17, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
27 3 0.05
28 54 0.84
29 7 0.11
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (28 bp):
TAAGACAGTCCTTGGCAGACTCCCTACA
Found at i:30999893 original size:31 final size:31
Alignment explanation
Indices: 30999858--30999934 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
30999848 TAACCCCATG
* *
30999858 GAGAAAATCAAGGGAACTACCAACCAGCCTA
1 GAGAAAATCAAGGAAACCACCAACCAGCCTA
* **
30999889 GAGAAAATTAAGGAAACCACTTACCAGCCTA
1 GAGAAAATCAAGGAAACCACCAACCAGCCTA
*
30999920 GAGAAATTCAAGGAA
1 GAGAAAATCAAGGAA
30999935 CCGACGCCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (31 bp):
GAGAAAATCAAGGAAACCACCAACCAGCCTA
Found at i:31004450 original size:38 final size:38
Alignment explanation
Indices: 31004394--31004476 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
31004384 ATTTAACTAT
*
31004394 TCAACCAATATGCAATATAGGCACCTCAAACACATAAA
1 TCAAGCAATATGCAATATAGGCACCTCAAACACATAAA
31004432 TCAAGCAATATGCAATATAGGCACCTCAAACACATAAA
1 TCAAGCAATATGCAATATAGGCACCTCAAACACATAAA
31004470 TCAAGCA
1 TCAAGCA
31004477 TACCTAAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.47, C:0.25, G:0.10, T:0.18
Consensus pattern (38 bp):
TCAAGCAATATGCAATATAGGCACCTCAAACACATAAA
Found at i:31024543 original size:21 final size:21
Alignment explanation
Indices: 31024517--31024567 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
31024507 ATAATTAGGT
*
31024517 TCAAGTGGTATGACCCTCAAG
1 TCAAGTGGTATGACCCTAAAG
*
31024538 TCAAGTGATATGACCCTAAAG
1 TCAAGTGGTATGACCCTAAAG
31024559 TCAAGTGGT
1 TCAAGTGGT
31024568 TTTAGAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (21 bp):
TCAAGTGGTATGACCCTAAAG
Found at i:31026989 original size:39 final size:39
Alignment explanation
Indices: 31026946--31027036 Score: 155
Period size: 39 Copynumber: 2.3 Consensus size: 39
31026936 ATGGCTCAAA
* *
31026946 TGGCATGTTTTGTGATGGAAGTGTTAGTGGTCATAATTG
1 TGGCATGTTTTGTGATGAAAGTGTTAATGGTCATAATTG
*
31026985 TGGCATGTTTTGTGATGAAAGTGTTAATTGTCATAATTG
1 TGGCATGTTTTGTGATGAAAGTGTTAATGGTCATAATTG
31027024 TGGCATGTTTTGT
1 TGGCATGTTTTGT
31027037 TAGAAGTTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.21, C:0.05, G:0.30, T:0.44
Consensus pattern (39 bp):
TGGCATGTTTTGTGATGAAAGTGTTAATGGTCATAATTG
Found at i:31028062 original size:15 final size:14
Alignment explanation
Indices: 31028038--31028067 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
31028028 TGGATAACCT
31028038 AATTTGACAAATCA
1 AATTTGACAAATCA
31028052 AATTATGACAAATCA
1 AATT-TGACAAATCA
31028067 A
1 A
31028068 CCTCATAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (14 bp):
AATTTGACAAATCA
Found at i:31031591 original size:14 final size:15
Alignment explanation
Indices: 31031565--31031593 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31031555 TTATACAAGG
31031565 TTAAAAATGATTTTT
1 TTAAAAATGATTTTT
31031580 TTAAAAAT-ATTTTT
1 TTAAAAATGATTTTT
31031594 AAATTTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTAAAAATGATTTTT
Found at i:31038248 original size:41 final size:41
Alignment explanation
Indices: 31038088--31038253 Score: 154
Period size: 41 Copynumber: 4.0 Consensus size: 41
31038078 CGTGCCTCTA
* * * * *
31038088 TTTGTACTTCGATACCCCTAAATTGTAGATACGTG-CCACTG
1 TTTGTACTTCGGTACCCCTGAATAGCACATACGTGCCCA-TG
* * * *
31038129 TTTGTACTTTGGTACCCCTAAATAGCACATACGTGCCCCTA
1 TTTGTACTTCGGTACCCCTGAATAGCACATACGTGCCCATG
* * * * * *
31038170 TTTATACCTCAGTACCCCTGAATCGCACATGCATGCCCATG
1 TTTGTACTTCGGTACCCCTGAATAGCACATACGTGCCCATG
* * *
31038211 TTTGTACTTCGGCACCCTTGAATAGCACATACGTGCCCCTG
1 TTTGTACTTCGGTACCCCTGAATAGCACATACGTGCCCATG
31038252 TT
1 TT
31038254 AACACTCTGG
Statistics
Matches: 98, Mismatches: 26, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
41 96 0.98
42 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (41 bp):
TTTGTACTTCGGTACCCCTGAATAGCACATACGTGCCCATG
Found at i:31038501 original size:14 final size:14
Alignment explanation
Indices: 31038482--31038509 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
31038472 TGTGGCTATA
31038482 TAGGTTGTTATAGT
1 TAGGTTGTTATAGT
31038496 TAGGTTGTTATAGT
1 TAGGTTGTTATAGT
31038510 ACATTAAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
TAGGTTGTTATAGT
Found at i:31050831 original size:50 final size:50
Alignment explanation
Indices: 31050774--31051107 Score: 449
Period size: 50 Copynumber: 6.7 Consensus size: 50
31050764 AATATGTGAG
*
31050774 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
* * *
31050824 CCTTGTAAGACCATGTCTGGGACTTGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
*
31050874 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
*
31050924 CCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
** * * **
31050974 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
* * * * **
31051024 CCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACA-GAAAACATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG-AGAGGTC
* *
31051073 CCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA
31051108 TGTTATTTTC
Statistics
Matches: 256, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
48 2 0.01
49 37 0.14
50 217 0.85
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
Found at i:31056229 original size:17 final size:17
Alignment explanation
Indices: 31056200--31056232 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
31056190 CTTGATGCGT
31056200 TTTTGAAAAAAAAATAC
1 TTTTGAAAAAAAAATAC
31056217 TTTT-AAAATAAAAATA
1 TTTTGAAAA-AAAAATA
31056233 TTATTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
TTTTGAAAAAAAAATAC
Found at i:31056929 original size:18 final size:16
Alignment explanation
Indices: 31056911--31056958 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
31056901 TTTTTATAAT
31056911 TTTTAAGTATTTTACAA
1 TTTTAA-TATTTTACAA
*
31056928 TTTTAATATTTTTGCAA
1 TTTTAATA-TTTTACAA
31056945 CTCTTTAATATTTT
1 -T-TTTAATATTTT
31056959 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 2 0.07
17 13 0.48
18 5 0.19
19 7 0.26
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.58
Consensus pattern (16 bp):
TTTTAATATTTTACAA
Found at i:31058184 original size:13 final size:13
Alignment explanation
Indices: 31058166--31058190 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31058156 TCTACTTTAT
31058166 TTTGAGATAATTA
1 TTTGAGATAATTA
31058179 TTTGAGATAATT
1 TTTGAGATAATT
31058191 CAAGAAGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTTGAGATAATTA
Found at i:31060913 original size:32 final size:32
Alignment explanation
Indices: 31060870--31061035 Score: 161
Period size: 32 Copynumber: 5.2 Consensus size: 32
31060860 TAATGTGATT
* *
31060870 GGCACAAAGCCATCAGTAGTAGTGATATGGCC
1 GGCACAAAGCCATCAGTAGCAGTGATATGACC
* * * * * * *
31060902 GGCACACAGCCATTAGTAACGGTAACATGATC
1 GGCACAAAGCCATCAGTAGCAGTGATATGACC
*
31060934 GGCACAAAGCCATCAGTAGCAGTGATATGACT
1 GGCACAAAGCCATCAGTAGCAGTGATATGACC
* * * * * * *
31060966 GGCACACAGCCATCAGCAACGGTAACATGATC
1 GGCACAAAGCCATCAGTAGCAGTGATATGACC
* *
31060998 GGCACAAAGCCATTAGTAGCAGTGATATGATC
1 GGCACAAAGCCATCAGTAGCAGTGATATGACC
31061030 GGCACA
1 GGCACA
31061036 CAGTCATACC
Statistics
Matches: 102, Mismatches: 32, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
32 102 1.00
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (32 bp):
GGCACAAAGCCATCAGTAGCAGTGATATGACC
Found at i:31060943 original size:64 final size:64
Alignment explanation
Indices: 31060865--31061038 Score: 276
Period size: 64 Copynumber: 2.7 Consensus size: 64
31060855 TACAGTAATG
* * * * *
31060865 TGATTGGCACAAAGCCATCAGTAGTAGTGATATGGCCGGCACACAGCCATTAGTAACGGTAACA
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAGCCATCAGCAACGGTAACA
*
31060929 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGACTGGCACACAGCCATCAGCAACGGTAACA
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAGCCATCAGCAACGGTAACA
* *
31060993 TGATCGGCACAAAGCCATTAGTAGCAGTGATATGATCGGCACACAG
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAG
31061039 TCATACCAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 101 1.00
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (64 bp):
TGATCGGCACAAAGCCATCAGTAGCAGTGATATGACCGGCACACAGCCATCAGCAACGGTAACA
Found at i:31061169 original size:27 final size:27
Alignment explanation
Indices: 31061116--31061345 Score: 293
Period size: 27 Copynumber: 8.6 Consensus size: 27
31061106 AAATTAGTCA
* *
31061116 TTTACCC-ACCAGGGCATTACGGTCAT
1 TTTACCCTACAAGGGCATTACGATCAT
* * *
31061142 TTTACCCTATAGGGGTATTACGATCAT
1 TTTACCCTACAAGGGCATTACGATCAT
* * *
31061169 TTTACCCTACAGGGGTATTACGATTAT
1 TTTACCCTACAAGGGCATTACGATCAT
*
31061196 TTTTCCCTACAAGGGCATTACGATCAT
1 TTTACCCTACAAGGGCATTACGATCAT
* *
31061223 TTGACCCTACAGGGGCATTACGATCAT
1 TTTACCCTACAAGGGCATTACGATCAT
31061250 TTTACCCTACAAGGGCATTAC-AGTCAT
1 TTTACCCTACAAGGGCATTACGA-TCAT
*
31061277 TTTACCCTACAAGGGCATTACAATCAT
1 TTTACCCTACAAGGGCATTACGATCAT
* * *
31061304 TTTACCCTATAAGGGCATTACGGTTAT
1 TTTACCCTACAAGGGCATTACGATCAT
*
31061331 TTTATCCTACAAGGG
1 TTTACCCTACAAGGG
31061346 TATTTCAATA
Statistics
Matches: 179, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 8 0.04
27 170 0.95
28 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (27 bp):
TTTACCCTACAAGGGCATTACGATCAT
Found at i:31061402 original size:27 final size:27
Alignment explanation
Indices: 31061111--31061497 Score: 267
Period size: 27 Copynumber: 14.5 Consensus size: 27
31061101 GGGAAAAATT
* * *
31061111 AGTCA-TTTACCC-ACCAGGGCATTAC
1 AGTCATTTTACCCTACAAGGGTATTTC
* * * *
31061136 GGTCATTTTACCCTATAGGGGTATTAC
1 AGTCATTTTACCCTACAAGGGTATTTC
* *
31061163 -GATCATTTTACCCTACAGGGGTATTAC
1 AG-TCATTTTACCCTACAAGGGTATTTC
* * * *
31061190 -GATTATTTTTCCCTACAAGGGCATTAC
1 AG-TCATTTTACCCTACAAGGGTATTTC
* * * *
31061217 -GATCATTTGACCCTACAGGGGCATTAC
1 AG-TCATTTTACCCTACAAGGGTATTTC
* *
31061244 -GATCATTTTACCCTACAAGGGCATTAC
1 AG-TCATTTTACCCTACAAGGGTATTTC
* *
31061271 AGTCATTTTACCCTACAAGGGCATTAC
1 AGTCATTTTACCCTACAAGGGTATTTC
* * * *
31061298 AATCATTTTACCCTATAAGGGCATTAC
1 AGTCATTTTACCCTACAAGGGTATTTC
* * *
31061325 GGTTATTTTATCCTACAAGGGTATTTC
1 AGTCATTTTACCCTACAAGGGTATTTC
* * * **
31061352 AAT-ATTCTACCTTACGGGGGTATTTC
1 AGTCATTTTACCCTACAAGGGTATTTC
*
31061378 AGTCATTTTATCCTACGAA-GGTATTTC
1 AGTCATTTTACCCTAC-AAGGGTATTTC
* * *
31061405 GGT-ATTCTACCCTAC-TGGGTATTTC
1 AGTCATTTTACCCTACAAGGGTATTTC
*
31061430 AGTCATTTTA-CCTATCAATGGTATTTC
1 AGTCATTTTACCCTA-CAAGGGTATTTC
*
31061457 AGTTATTTTA-CCTATCAAGGGTATTTC
1 AGTCATTTTACCCTA-CAAGGGTATTTC
*
31061484 GGTCATTTTACCCT
1 AGTCATTTTACCCT
31061498 TCGGGGTATT
Statistics
Matches: 301, Mismatches: 50, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
25 18 0.06
26 44 0.15
27 235 0.78
28 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (27 bp):
AGTCATTTTACCCTACAAGGGTATTTC
Found at i:31061442 original size:79 final size:79
Alignment explanation
Indices: 31061282--31061509 Score: 198
Period size: 79 Copynumber: 2.9 Consensus size: 79
31061272 GTCATTTTAC
* * * * * * * * *
31061282 CCTA-CAAGGGCATTACAATCATTTTACCCTAT-AAGGGCATTACGGTTATTTTATCCTACAAGG
1 CCTATCAAGGGTATTTCAGTCATTTTA-CCTATCAAGGGTATTTCGGTCATTCTACCCTAC-GGG
31061345 GTATTTCAATATTCTA
64 GTATTTCAATATTCTA
** *
31061361 CCT-TACGGGGGTATTTCAGTCATTTTATCCTA-CGAA-GGTATTTCGGT-ATTCTACCCTACTG
1 CCTAT-CAAGGGTATTTCAGTCATTTTA-CCTATC-AAGGGTATTTCGGTCATTCTACCCTACGG
* *
31061422 GGTATTTCAGTCATTTTA
63 GGTATTTCAAT-ATTCTA
* * * *
31061440 CCTATCAATGGTATTTCAGTTATTTTACCTATCAAGGGTATTTCGGTCATTTTACCCTTCGGGGT
1 CCTATCAAGGGTATTTCAGTCATTTTACCTATCAAGGGTATTTCGGTCATTCTACCCTACGGGGT
31061505 ATTTC
66 ATTTC
31061510 GATCCAGATA
Statistics
Matches: 120, Mismatches: 20, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
78 17 0.14
79 51 0.43
80 50 0.42
81 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (79 bp):
CCTATCAAGGGTATTTCAGTCATTTTACCTATCAAGGGTATTTCGGTCATTCTACCCTACGGGGT
ATTTCAATATTCTA
Found at i:31064065 original size:20 final size:18
Alignment explanation
Indices: 31064028--31064075 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 18
31064018 TTTCACAATT
*
31064028 TCACTTTCACTTTCACTC
1 TCACTCTCACTTTCACTC
31064046 TCACTCTCACTCTGTCACTC
1 TCACTCTCACT-T-TCACTC
* *
31064066 ACACTGTCAC
1 TCACTCTCAC
31064076 GACTCACGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 10 0.40
19 1 0.04
20 14 0.56
ACGTcount: A:0.19, C:0.42, G:0.04, T:0.35
Consensus pattern (18 bp):
TCACTCTCACTTTCACTC
Found at i:31064795 original size:16 final size:16
Alignment explanation
Indices: 31064774--31064807 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
31064764 AATTATTGAA
31064774 TATATTGTAATTAATG
1 TATATTGTAATTAATG
31064790 TATATTGTAATTAATG
1 TATATTGTAATTAATG
31064806 TA
1 TA
31064808 AGAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
TATATTGTAATTAATG
Found at i:31068095 original size:24 final size:24
Alignment explanation
Indices: 31068040--31068098 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
31068030 GGTTTAATGC
* *
31068040 AAATGGAGATATTTTGGAGAGATG
1 AAATGGATATATTTTGGAAAGATG
31068064 AAATGGATATATTTTGGAAAGATG
1 AAATGGATATATTTTGGAAAGATG
31068088 AAATGGATATA
1 AAATGGATATA
31068099 AATGGAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (24 bp):
AAATGGATATATTTTGGAAAGATG
Found at i:31068170 original size:17 final size:17
Alignment explanation
Indices: 31068148--31068245 Score: 61
Period size: 17 Copynumber: 5.4 Consensus size: 17
31068138 AATTCAAGAC
31068148 TTATGTAATATTTTTAA
1 TTATGTAATATTTTTAA
* ***
31068165 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
31068184 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
* ** *
31068202 TTATGTAGTGATTCAAATAT
1 TTATGTAAT-ATT--TTTAA
*
31068222 TTATGTAATTTTTTTAA
1 TTATGTAATATTTTTAA
31068239 TTATGTA
1 TTATGTA
31068246 GTGATTTAAT
Statistics
Matches: 58, Mismatches: 17, Indels: 12
0.67 0.20 0.14
Matches are distributed among these distances:
17 25 0.43
18 8 0.14
19 7 0.12
20 18 0.31
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.52
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:31068188 original size:37 final size:37
Alignment explanation
Indices: 31068139--31068251 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
31068129 TTCTGTGTTA
31068139 ATTC-AAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
31068175 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
* * *
31068212 ATTCAAATATTTATGTAATTTTTTTAATTATGTAGTG
1 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
31068249 ATT
1 ATT
31068252 TAATTCGGGT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 4 0.05
37 69 0.95
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (37 bp):
ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
Found at i:31068266 original size:9 final size:9
Alignment explanation
Indices: 31068252--31068386 Score: 153
Period size: 9 Copynumber: 14.3 Consensus size: 9
31068242 TGTAGTGATT
31068252 TAATTCGGG
1 TAATTCGGG
31068261 TAATTCGGG
1 TAATTCGGG
*
31068270 TAATTTGGG
1 TAATTCGGG
*
31068279 TAATTTTTGGG
1 TAA--TTCGGG
31068290 TAATTCGGG
1 TAATTCGGG
*
31068299 TAATTTGGG
1 TAATTCGGG
31068308 TAATTTTCGGG
1 TAA--TTCGGG
31068319 TAATTCGGG
1 TAATTCGGG
31068328 TAATTTTCGGG
1 TAA--TTCGGG
*
31068339 TAATTCAGG
1 TAATTCGGG
*
31068348 TAATTTGGG
1 TAATTCGGG
31068357 TAATTCGGG
1 TAATTCGGG
*
31068366 TAAGTCGGG
1 TAATTCGGG
*
31068375 TAAGTCGGG
1 TAATTCGGG
31068384 TAA
1 TAA
31068387 ATTTTAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
9 85 0.77
11 26 0.23
ACGTcount: A:0.23, C:0.07, G:0.32, T:0.38
Consensus pattern (9 bp):
TAATTCGGG
Found at i:31068292 original size:20 final size:18
Alignment explanation
Indices: 31068252--31068386 Score: 153
Period size: 20 Copynumber: 7.2 Consensus size: 18
31068242 TGTAGTGATT
31068252 TAATTCGGGTAATTCGGG
1 TAATTCGGGTAATTCGGG
* *
31068270 TAATTTGGGTAATTTTTGGG
1 TAATTCGGGTAA--TTCGGG
*
31068290 TAATTCGGGTAATTTGGG
1 TAATTCGGGTAATTCGGG
31068308 TAATTTTCGGGTAATTCGGG
1 TAA--TTCGGGTAATTCGGG
*
31068328 TAATTTTCGGGTAATTCAGG
1 TAA--TTCGGGTAATTCGGG
*
31068348 TAATTTGGGTAATTCGGG
1 TAATTCGGGTAATTCGGG
* *
31068366 TAAGTCGGGTAAGTCGGG
1 TAATTCGGGTAATTCGGG
31068384 TAA
1 TAA
31068387 ATTTTAACCA
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
18 51 0.50
20 52 0.50
ACGTcount: A:0.23, C:0.07, G:0.32, T:0.38
Consensus pattern (18 bp):
TAATTCGGGTAATTCGGG
Found at i:31068292 original size:29 final size:29
Alignment explanation
Indices: 31068255--31068386 Score: 164
Period size: 29 Copynumber: 4.6 Consensus size: 29
31068245 AGTGATTTAA
31068255 TTCGGGTAATTCGGGTAATTTGGGTAATT
1 TTCGGGTAATTCGGGTAATTTGGGTAATT
*
31068284 TTTGGGTAATTCGGGTAATTTGGGTAATT
1 TTCGGGTAATTCGGGTAATTTGGGTAATT
31068313 TTCGGGTAATTCGGGTAATTTTCGGGTAA--
1 TTCGGGTAATTCGGGTAA-TTT-GGGTAATT
* * *
31068342 TTCAGGTAATTTGGGTAATTCGGGTAA--
1 TTCGGGTAATTCGGGTAATTTGGGTAATT
* *
31068369 GTCGGGTAAGTCGGGTAA
1 TTCGGGTAATTCGGGTAA
31068387 ATTTTAACCA
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
27 20 0.22
28 2 0.02
29 61 0.66
30 3 0.03
31 6 0.07
ACGTcount: A:0.22, C:0.08, G:0.33, T:0.38
Consensus pattern (29 bp):
TTCGGGTAATTCGGGTAATTTGGGTAATT
Found at i:31071162 original size:16 final size:18
Alignment explanation
Indices: 31071141--31071173 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
31071131 TTTGAGATAA
31071141 AAATAAA-A-TTTAAAAT
1 AAATAAATATTTTAAAAT
31071157 AAATAAATATTTTAAAA
1 AAATAAATATTTTAAAA
31071174 CTTAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATAAATATTTTAAAAT
Found at i:31072034 original size:73 final size:72
Alignment explanation
Indices: 31071890--31072035 Score: 179
Period size: 73 Copynumber: 2.0 Consensus size: 72
31071880 TGAAATCAAT
* **
31071890 ATTTTTATCTATAAGTATGATAAAAATTTTTATCAAATAAATTTATTTAACCAAATATTTTGGTA
1 ATTTTTATCTATAAGTATAATAAAAATTTTTATCAAATAAATTTATTTAACCAAATATTTTACTA
31071955 AAATTAA
66 AAATTAA
* * * *
31071962 ATTTCTTATTTATAAGTATAAT-AAATTTTCTTATTAAGTAAATTTATTTATA-CAAATATTTTA
1 ATTT-TTATCTATAAGTATAATAAAAATTT-TTATCAAATAAATTTATTTA-ACCAAATATTTTA
*
31072025 CTAACATTAA
63 CTAAAATTAA
31072035 A
1 A
31072036 ATTATCATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
72 10 0.16
73 52 0.83
74 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (72 bp):
ATTTTTATCTATAAGTATAATAAAAATTTTTATCAAATAAATTTATTTAACCAAATATTTTACTA
AAATTAA
Found at i:31073118 original size:20 final size:20
Alignment explanation
Indices: 31073093--31073130 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31073083 TCCTCTTTCA
31073093 ATCTGTTT-TAATATAATTGG
1 ATCTGTTTGTAAT-TAATTGG
31073113 ATCTGTTTGTAATTAATT
1 ATCTGTTTGTAATTAATT
31073131 TAATTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (20 bp):
ATCTGTTTGTAATTAATTGG
Found at i:31092777 original size:42 final size:41
Alignment explanation
Indices: 31092668--31092834 Score: 154
Period size: 42 Copynumber: 3.9 Consensus size: 41
31092658 CTTTGATATG
* * * * *
31092668 TGATTTCATGTAAGACCATGTCTGGGACGTTGGAATTGATT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATA
*
31092709 TGAGAATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 T--G-ATTACATGTAAGACCATGTCTGGGACATTGGCATCG-ATA
* * * * *
31092754 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATA
* * *
31092795 GTTGATTACATGTAAGACCACGTCTGGAACGTTGGCATCG
1 --TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG
31092835 TACGAGCTTT
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
41 4 0.04
42 32 0.31
43 32 0.31
44 31 0.30
45 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (41 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATA
Found at i:31100627 original size:27 final size:27
Alignment explanation
Indices: 31100597--31100801 Score: 164
Period size: 27 Copynumber: 7.6 Consensus size: 27
31100587 ATATTGAGCC
* *
31100597 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
31100624 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
31100651 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * **
31100679 CGCACACTTAGTGCCGCATGATCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
31100706 CGCACACTTAGTGC-ATCGTATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * **
31100733 CGCACACTTAGTGC-ATCGTATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
31100760 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAATCA-ACT
31100787 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31100802 GTACAGTTTA
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
27 128 0.85
28 23 0.15
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:31100758 original size:54 final size:53
Alignment explanation
Indices: 31100597--31100800 Score: 209
Period size: 54 Copynumber: 3.8 Consensus size: 53
31100587 ATATTGAGCC
* * * **
31100597 CGCACACTCAGTGCTAT-ATAATCA-ACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAGTCATA-TCGCACACTTAGTG-CACGTATTCATTT
* *
31100651 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGC-CGCATGATCATTT
1 CGCACACTTAGTGCAT-CATAGTCATA-TCGCACACTTAGTGCACGTAT--TCATTT
* * *
31100706 CGCACACTTAGTGCATCGTATTCATTTCGCACACTTAGTGCATCGTATTCATTT
1 CGCACACTTAGTGCATCATAGTCATATCGCACACTTAGTGCA-CGTATTCATTT
*
31100760 CGCACACTTAGTGCAACATAGTCATATCGCACACTTAGTGC
1 CGCACACTTAGTGCATCATAGTCATATCGCACACTTAGTGC
31100801 TGTACAGTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 3 0.02
54 78 0.61
55 40 0.31
56 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (53 bp):
CGCACACTTAGTGCATCATAGTCATATCGCACACTTAGTGCACGTATTCATTT
Found at i:31114695 original size:17 final size:18
Alignment explanation
Indices: 31114675--31114719 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
31114665 TACCTAAATG
*
31114675 ATATATATA-CAATAAAA
1 ATATATAAATCAATAAAA
*
31114692 ATATATAAATGAATAAAA
1 ATATATAAATCAATAAAA
*
31114710 ATATAAAAAT
1 ATATATAAAT
31114720 AAAGTAGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
ATATATAAATCAATAAAA
Found at i:31114706 original size:18 final size:18
Alignment explanation
Indices: 31114685--31114719 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31114675 ATATATATAC
*
31114685 AATAAAAATATATAAATG
1 AATAAAAATATAAAAATG
31114703 AATAAAAATATAAAAAT
1 AATAAAAATATAAAAAT
31114720 AAAGTAGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
AATAAAAATATAAAAATG
Found at i:31114836 original size:25 final size:23
Alignment explanation
Indices: 31114793--31114838 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
31114783 AAAATAGTAT
31114793 TTAATATATATAAAAATAAAAGA
1 TTAATATATATAAAAATAAAAGA
*
31114816 TTAATATTATGTATAAAATAAAA
1 TTAATA-TATATA-AAAATAAAA
31114839 TATATTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
TTAATATATATAAAAATAAAAGA
Found at i:31115125 original size:26 final size:26
Alignment explanation
Indices: 31115096--31115177 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 26
31115086 ATCTTTAATG
*
31115096 ATAATAATATATAGATAAAAT-GTAT
1 ATAATAATATATAGATAAAATAATAT
* *
31115121 AATAATAATAATTTGTGA-AAAATAATAT
1 -ATAATAAT-ATAT-AGATAAAATAATAT
31115149 ATAATAATATATA-ATAAAATAATTAT
1 ATAATAATATATAGATAAAATAA-TAT
31115175 ATA
1 ATA
31115178 CAATATAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
24 1 0.02
25 7 0.15
26 17 0.37
27 16 0.35
28 5 0.11
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (26 bp):
ATAATAATATATAGATAAAATAATAT
Found at i:31115169 original size:12 final size:10
Alignment explanation
Indices: 31115141--31115182 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
31115131 ATTTGTGAAA
31115141 AATAATATAT
1 AATAATATAT
31115151 AATAATATAT
1 AATAATATAT
31115161 AATAA-A-AT
1 AATAATATAT
* *
31115169 AATTATATAC
1 AATAATATAT
31115179 AATA
1 AATA
31115183 TAAAAATAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 19 0.70
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
AATAATATAT
Found at i:31115225 original size:15 final size:14
Alignment explanation
Indices: 31115199--31115240 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
31115189 TAAGGTTAAG
31115199 AATAAAATAAATAAC
1 AATAAAA-AAATAAC
*
31115214 AATATAAAAAATAAT
1 AATA-AAAAAATAAC
31115229 AATAAAAAAATA
1 AATAAAAAAATA
31115241 TATATATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 8 0.32
15 14 0.56
16 3 0.12
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (14 bp):
AATAAAAAAATAAC
Found at i:31128301 original size:29 final size:29
Alignment explanation
Indices: 31128223--31128368 Score: 170
Period size: 29 Copynumber: 5.1 Consensus size: 29
31128213 ACCCCCACAT
*
31128223 ACATGCATATGGCCCACTT-GGCCCAA-TC
1 ACATTCATATGGCCCA-TTAGGCCCAATTC
* *
31128251 TCATTTATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* *
31128280 ACATTCATATGGCCTATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* *
31128309 ATATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * * *
31128338 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATTC
31128367 AC
1 AC
31128369 CTTATATTCA
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
27 2 0.02
28 20 0.20
29 79 0.78
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAATTC
Found at i:31134649 original size:43 final size:43
Alignment explanation
Indices: 31134586--31134714 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
31134576 GCTGGTGAAT
*
31134586 AATATTATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTGA
* * * * * *
31134629 GATAATATCAGGCTTTGGGCCTAGTAGGCTATAATGCCAGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTGA
* ** * *
31134672 AATGATATCGGGCTTCAAGACTAGCAGGTGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTGA
31134714 A
1 A
31134715 TGAGTTCAGA
Statistics
Matches: 68, Mismatches: 18, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 11 0.16
43 57 0.84
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTGA
Found at i:31134777 original size:40 final size:41
Alignment explanation
Indices: 31134705--31134782 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
31134695 GCAGGTGAAA
* **
31134705 TGCCGGTGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTTG
1 TGCCGGTGAATGAATTCAGACTTAAAACCTAGCAGGCTTTG
**
31134746 TGCCGGTG-ATGAATTCAGGTTTAAAACCTAGCAGGCT
1 TGCCGGTGAATGAATTCAGACTTAAAACCTAGCAGGCT
31134783 AAATGTCGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 24 0.75
41 8 0.25
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (41 bp):
TGCCGGTGAATGAATTCAGACTTAAAACCTAGCAGGCTTTG
Found at i:31141426 original size:29 final size:29
Alignment explanation
Indices: 31141360--31141512 Score: 152
Period size: 29 Copynumber: 5.4 Consensus size: 29
31141350 ACCCTTACAT
* *
31141360 ACATGCATATGGCCTACTTA-GCCC-AATC
1 ACATTCATATGGCCCA-TTAGGCCCAAATC
* * * *
31141388 TCATTTATATAGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
31141417 ACATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
31141446 ATATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
31141475 ACCTTTATATGGCCCGTT-GGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
31141503 ACCTT-ATATG
1 ACATTCATATG
31141513 CATGCTCATA
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
27 8 0.08
28 30 0.28
29 68 0.64
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:31150776 original size:39 final size:40
Alignment explanation
Indices: 31150681--31150942 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
31150671 TTGAATGATG
*
31150681 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
31150719 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
31150760 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
31150799 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
31150838 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
31150877 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
31150916 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
31150943 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 131 0.65
40 58 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:31158980 original size:39 final size:40
Alignment explanation
Indices: 31158836--31159096 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
31158826 TTGAATGATG
*
31158836 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
31158874 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
31158915 TCCAGGCTAAG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
31158953 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
31158992 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
31159031 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
31159070 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
31159097 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 37 0.19
39 93 0.47
40 58 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:31159118 original size:79 final size:79
Alignment explanation
Indices: 31158888--31159129 Score: 264
Period size: 79 Copynumber: 3.1 Consensus size: 79
31158878 GGACTAAGAT
* * **
31158888 CCGAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAG-CCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* *
31158951 ATTCCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* ** *
31158965 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
31159030 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
31159044 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
31159106 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
31159123 CCGAAGG
1 CCGAAGG
31159130 TACGTGATTT
Statistics
Matches: 147, Mismatches: 11, Indels: 12
0.86 0.06 0.07
Matches are distributed among these distances:
77 38 0.26
78 37 0.25
79 47 0.32
80 25 0.17
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:31167900 original size:25 final size:25
Alignment explanation
Indices: 31167863--31167928 Score: 91
Period size: 25 Copynumber: 2.6 Consensus size: 25
31167853 CCAATTTTCC
31167863 CAACTCGTGTGAGCATTC-GAATT-
1 CAACTCGTGTGAGCATTCTGAATTA
*
31167886 CATAGCTCGTGTGAGCATTCTGATTTA
1 CA-A-CTCGTGTGAGCATTCTGAATTA
31167913 CAACTCGTGTGAGCAT
1 CAACTCGTGTGAGCAT
31167929 ACATGTACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
23 2 0.05
24 1 0.03
25 28 0.74
26 5 0.13
27 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (25 bp):
CAACTCGTGTGAGCATTCTGAATTA
Found at i:31170806 original size:21 final size:20
Alignment explanation
Indices: 31170782--31170820 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
31170772 GGACTGAATT
* *
31170782 GAAAACATTCGAAACATTTAA
1 GAAAAAATTC-AAAAATTTAA
31170803 GAAAAAATTCAAAAATTT
1 GAAAAAATTCAAAAATTT
31170821 GAACTACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (20 bp):
GAAAAAATTCAAAAATTTAA
Found at i:31172086 original size:121 final size:123
Alignment explanation
Indices: 31171855--31172123 Score: 323
Period size: 121 Copynumber: 2.2 Consensus size: 123
31171845 GAGAGTAAAT
* * *
31171855 AGGGGCACTTATGTGCAATTTAAGGGTACCGAAGTTCAAACAAGGGCACGTATGTGCAATTCAGG
1 AGGGGCACGTATGTGCAATTTAGGGGTACCGAAATTCAAACAAGGGCACGTATGTGCAATTCAGG
* ** * * *
31171920 GTTGCTGAAGTTCAAAAAGGGGCACATATGTGTAATTTAAGGGTA-CAAAGTACAAGA-
66 GTTACCAAAGTTCAAAAAGGGGCACATATGTGCAATTCAAAGGTACCAAAGTACAA-AC
* *
31171977 A-GGGCACGTATGTGCAATTTAGGGGTA-CTAAATTACAAACAGGGGCACGTATGTGCAATTCAG
1 AGGGGCACGTATGTGCAATTTAGGGGTACCGAAATT-CAAACAAGGGCACGTATGTGCAATTCAG
* * * *
31172040 AGG-TACCAAAGTTCAAACAGGGGTACGTGTGTGCAATTCAAAGGTACCAAAGTACAAAC
65 -GGTTACCAAAGTTCAAAAAGGGGCACATATGTGCAATTCAAAGGTACCAAAGTACAAAC
* *
31172099 AGGGGCACGTATATGCAATTCAGGG
1 AGGGGCACGTATGTGCAATTTAGGG
31172124 AATAATTAAC
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
120 5 0.04
121 85 0.68
122 14 0.11
123 21 0.17
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (123 bp):
AGGGGCACGTATGTGCAATTTAGGGGTACCGAAATTCAAACAAGGGCACGTATGTGCAATTCAGG
GTTACCAAAGTTCAAAAAGGGGCACATATGTGCAATTCAAAGGTACCAAAGTACAAAC
Found at i:31172119 original size:41 final size:41
Alignment explanation
Indices: 31171855--31172120 Score: 272
Period size: 41 Copynumber: 6.5 Consensus size: 41
31171845 GAGAGTAAAT
* * * *
31171855 AGGGGCACTTATGTGCAATTTAAGGGTACCGAAGTTCAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAAAC
* * ** * *
31171896 AAGGGCACGTATGTGCAATTC-AGGGTTGCTGAAGTTCAAAA
1 AGGGGCACGTATGTGCAATTCAAGGG-TACCAAAGTACAAAC
* * *
31171937 AGGGGCACATATGTGTAATTTAAGGGTA-CAAAGTACAAGA-
1 AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAA-AC
* * * *
31171977 A-GGGCACGTATGTGCAATTTAGGGGTACTAAATTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAAAC
*
31172017 AGGGGCACGTATGTGCAATTC-AGAGGTACCAAAGTTCAAAC
1 AGGGGCACGTATGTGCAATTCAAG-GGTACCAAAGTACAAAC
* * *
31172058 AGGGGTACGTGTGTGCAATTCAAAGGTACCAAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAAAC
*
31172099 AGGGGCACGTATATGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
31172121 GGGAATAATT
Statistics
Matches: 186, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
39 24 0.13
40 22 0.12
41 135 0.73
42 5 0.03
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.23
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAAGGGTACCAAAGTACAAAC
Found at i:31178051 original size:29 final size:28
Alignment explanation
Indices: 31178006--31178067 Score: 88
Period size: 29 Copynumber: 2.2 Consensus size: 28
31177996 ATAGGGCCAT
* *
31178006 GTGTCACACATGGCTGAGTCACATGCCC
1 GTGTCACACACGACTGAGTCACATGCCC
*
31178034 GTGTCAACACACGACTGAGTCACATGCCT
1 GTGTC-ACACACGACTGAGTCACATGCCC
31178063 GTGTC
1 GTGTC
31178068 TCAGGCAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.23
Consensus pattern (28 bp):
GTGTCACACACGACTGAGTCACATGCCC
Found at i:31182473 original size:25 final size:25
Alignment explanation
Indices: 31182410--31182474 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
31182400 TTTTCTTAGT
*
31182410 TTTA-TTTTTATTTCTCATTTTTATC
1 TTTATTTTTTATTT-TCATTTTAATC
* * * * *
31182435 TTTGTCTATAATTTTGATTTTAATC
1 TTTATTTTTTATTTTCATTTTAATC
31182460 TTTATTTTTTATTTT
1 TTTATTTTTTATTTT
31182475 AATGTTAGTT
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
25 23 0.79
26 6 0.21
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (25 bp):
TTTATTTTTTATTTTCATTTTAATC
Found at i:31182486 original size:19 final size:20
Alignment explanation
Indices: 31182446--31182499 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
31182436 TTGTCTATAA
* *
31182446 TTTTGATTTTAATCTTTA-T
1 TTTTTATTTTAATCGTTATT
31182465 TTTTTATTTTAAT-GTTAGTT
1 TTTTTATTTTAATCGTTA-TT
31182485 TTATTTATTTTAATC
1 TT-TTTATTTTAATC
31182500 AAGGGGTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 3 0.10
19 12 0.41
20 3 0.10
21 11 0.38
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTTTATTTTAATCGTTATT
Found at i:31194468 original size:115 final size:115
Alignment explanation
Indices: 31194266--31194613 Score: 599
Period size: 115 Copynumber: 3.0 Consensus size: 115
31194256 AATGCCTTAT
*
31194266 TGGCATATTGGTTGTG-TGGAATAATGGTATAGTGAATTGGTCATTTCAAGCATGTTTTGGTATG
1 TGGCATATTGGTTG-GATGGAATAATGGTATAGTGAATTGGTCATTTCATGCATGTTTTGGTATG
* *
31194330 GTTTGATGCTTTGAACAAGGGTGCAAATGGCTTATAGGTACATGCTTGAAA
65 TTTTGATGCTTTGAACAAGGGTGCAAATGGCTTGTAGGTACATGCTTGAAA
* *
31194381 TGGCATATTGATTGGATGGAATAATGGTATAGTGAATTGGTCATTTCATGCATGTTTAGGTATGT
1 TGGCATATTGGTTGGATGGAATAATGGTATAGTGAATTGGTCATTTCATGCATGTTTTGGTATGT
*
31194446 TTTGATGCTTTGAAAAAGGGTGCAAATGGCTTGTAGGTACATGCTTGAAA
66 TTTGATGCTTTGAACAAGGGTGCAAATGGCTTGTAGGTACATGCTTGAAA
*
31194496 TTGCATATTGGTTGGATGGAATAATGGTATAGTGAATTGGTCATTTCATGCATGTTTTGGTATGT
1 TGGCATATTGGTTGGATGGAATAATGGTATAGTGAATTGGTCATTTCATGCATGTTTTGGTATGT
* *
31194561 TTTGATGCTTTGAACAAGGGTGCAAATGGCTTGTCGGTACAGGCTTGAAA
66 TTTGATGCTTTGAACAAGGGTGCAAATGGCTTGTAGGTACATGCTTGAAA
31194611 TGG
1 TGG
31194614 GTGATGGAAA
Statistics
Matches: 219, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
114 1 0.00
115 218 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.37
Consensus pattern (115 bp):
TGGCATATTGGTTGGATGGAATAATGGTATAGTGAATTGGTCATTTCATGCATGTTTTGGTATGT
TTTGATGCTTTGAACAAGGGTGCAAATGGCTTGTAGGTACATGCTTGAAA
Found at i:31201265 original size:14 final size:14
Alignment explanation
Indices: 31201246--31201282 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
31201236 TTTTCTTTCT
31201246 TTCTTCTCCCTCTC
1 TTCTTCTCCCTCTC
31201260 TTCTTCTCCCTCTC
1 TTCTTCTCCCTCTC
31201274 TTCTTCTCC
1 TTCTTCTCC
31201283 ACTACTGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (14 bp):
TTCTTCTCCCTCTC
Found at i:31202022 original size:11 final size:12
Alignment explanation
Indices: 31202006--31202045 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
31201996 TCTTCGTCTG
31202006 CTTCTCCTCC-T
1 CTTCTCCTCCTT
31202017 CTTCTCCTCCTT
1 CTTCTCCTCCTT
* *
31202029 CTTCTTCTTCTT
1 CTTCTCCTCCTT
31202041 CTTCT
1 CTTCT
31202046 TCTTCTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (12 bp):
CTTCTCCTCCTT
Found at i:31202032 original size:3 final size:3
Alignment explanation
Indices: 31202016--31202053 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
31202006 CTTCTCCTCC
* *
31202016 TCT TCT CCT CCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
31202054 ACATAATTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TCT
Done.