Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 107 of 228
Found at i:31202136 original size:21 final size:21
Alignment explanation
Indices: 31202121--31202167 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 21
31202111 ATGGCTCCGT
31202121 GAAGAGCAACGCTGGCTAAGA
1 GAAGAGCAACGCTGGCTAAGA
*
31202142 GAAGAGCAGCGCTGGCTTAAAGA
1 GAAGAGCAACGCTGGC-T-AAGA
31202165 GAA
1 GAA
31202168 AGAATCGCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 15 0.65
22 1 0.04
23 7 0.30
ACGTcount: A:0.38, C:0.17, G:0.34, T:0.11
Consensus pattern (21 bp):
GAAGAGCAACGCTGGCTAAGA
Found at i:31203312 original size:26 final size:26
Alignment explanation
Indices: 31203282--31203331 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
31203272 AACTTGTTTA
31203282 TTGTTCCACTAATATATAATAAAACG
1 TTGTTCCACTAATATATAATAAAACG
31203308 TTGTTCCACTAATATATAATAAAA
1 TTGTTCCACTAATATATAATAAAA
31203332 TTATTATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (26 bp):
TTGTTCCACTAATATATAATAAAACG
Found at i:31203445 original size:6 final size:6
Alignment explanation
Indices: 31203434--31203476 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
31203424 AGATATTATA
31203434 TATATG TATATG TATATG TATATG TATATG TATATG TATATG T
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG T
31203477 TTATTTATTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:31205872 original size:25 final size:26
Alignment explanation
Indices: 31205824--31205877 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
31205814 TATTATAGGC
**
31205824 TTTTTATTTATTTATAATTGTATATA
1 TTTTTATAAATTTATAATTGTATATA
*
31205850 TTTTTATAAATTTGTAATT-TATATA
1 TTTTTATAAATTTATAATTGTATATA
31205875 TTT
1 TTT
31205878 AAAATAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTTTATAAATTTATAATTGTATATA
Found at i:31209631 original size:144 final size:144
Alignment explanation
Indices: 31209384--31209670 Score: 357
Period size: 144 Copynumber: 2.0 Consensus size: 144
31209374 AAAAAGAGAA
* * *
31209384 AGTTTAGATTTTAAAAATAAAAATATGTTTTCTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTA
1 AGTTTAGATTTTAAAAATAAAAATATGATTTCTTTAGTCATTTTAAAGAAAAGTGTAAAATTTTA
*
31209449 AAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAACTTTGATCTTTAAGAAAAATAGT
66 AAACAAAGTTTTAATTCTTTTTCAACTATTTCAAAAT-AAAACTTTGATCTTTAAGAAAAATAGT
*
31209514 -ATTTTTTTAAAGAG
130 GATTTTGTTAAAGAG
** * **
31209528 AGTTTAGATTTTTTTAAATAAAAATCT-ATTT-TTTAGTCATTTTAAAGAAAATGTGTAGATTTT
1 AGTTTAGA-TTTTAAAAATAAAAATATGATTTCTTTAGTCATTTTAAAGAAAA-GTGTA-AAATT
* ** ** * *
31209591 TTAAAACAAAGTTTTGA-TCTTTTTCAACTATTTTGAAATAAAGTTTTGATTTTTAAGAAAAGTA
63 TTAAAACAAAGTTTTAATTCTTTTTCAACTATTTCAAAATAAAACTTTGATCTTTAAGAAAAATA
31209655 GTGATTTTGTTAAAGA
128 GTGATTTTGTTAAAGA
31209671 AAACTTTTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
143 42 0.34
144 46 0.38
145 34 0.28
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.45
Consensus pattern (144 bp):
AGTTTAGATTTTAAAAATAAAAATATGATTTCTTTAGTCATTTTAAAGAAAAGTGTAAAATTTTA
AAACAAAGTTTTAATTCTTTTTCAACTATTTCAAAATAAAACTTTGATCTTTAAGAAAAATAGTG
ATTTTGTTAAAGAG
Found at i:31209694 original size:143 final size:143
Alignment explanation
Indices: 31209416--31209694 Score: 323
Period size: 143 Copynumber: 2.0 Consensus size: 143
31209406 ATATGTTTTC
* * *
31209416 TTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTC
1 TTTAGTCATTTTAAAGAAAAGTGTAAAATTTTAAAACAAAGTTTTAATTCTTTTTCAACTATTTC
* * * **
31209481 AAAATAAAAACTTTGATCTTTAAGAAAAATAGTATTTTTTTAAAGAGAGTTTAGATTTTTTTAAA
66 AAAATAAAAACTTTGATCTTTAAGAAAAATAGTATTTTGTTAAAGAAACTTTAGATTTTTGCAAA
*
31209546 TAAAAATCTATTT
131 AAAAAATCTATTT
** *
31209559 TTTAGTCATTTTAAAGAAAATGTGTAGATTTTTTAAAACAAAGTTTTGA-TCTTTTTCAACTATT
1 TTTAGTCATTTTAAAGAAAA-GTGTA-AAATTTTAAAACAAAGTTTTAATTCTTTTTCAACTATT
** ** * * *
31209623 TTGAAAT-AAAGTTTTGATTTTTAAGAAAAGTAGTGATTTTGTTAAAGAAAACTTT-TA-TTTTG
64 TCAAAATAAAAACTTTGATCTTTAAGAAAAATAGT-ATTTTGTTAAAG-AAACTTTAGATTTTTG
31209685 CAAAAAAAAA
127 CAAAAAAAAA
31209695 AATTCAGCCA
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
143 54 0.48
144 35 0.31
145 24 0.21
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (143 bp):
TTTAGTCATTTTAAAGAAAAGTGTAAAATTTTAAAACAAAGTTTTAATTCTTTTTCAACTATTTC
AAAATAAAAACTTTGATCTTTAAGAAAAATAGTATTTTGTTAAAGAAACTTTAGATTTTTGCAAA
AAAAAATCTATTT
Found at i:31209794 original size:6 final size:6
Alignment explanation
Indices: 31209785--31209823 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
31209775 TTGCCAACAT
* *
31209785 AGAAAG AGAAAG AGAAAG AGAAAG AGGAAG AGGAAG AGA
1 AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG AGA
31209824 TTCTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (6 bp):
AGAAAG
Found at i:31210629 original size:26 final size:26
Alignment explanation
Indices: 31210600--31210665 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
31210590 TTAGTTAAGT
* *
31210600 AGGTGTTATATTTTAACGAAACTATA
1 AGGTGTTACATTTTAACGAAACCATA
* *
31210626 AGGTTTTTACATTTTAATGAAACCATA
1 AGG-TGTTACATTTTAACGAAACCATA
*
31210653 AGGTTTTTACATT
1 AGG-TGTTACATT
31210666 CAGATTTAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
26 3 0.09
27 32 0.91
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (26 bp):
AGGTGTTACATTTTAACGAAACCATA
Found at i:31210639 original size:27 final size:27
Alignment explanation
Indices: 31210609--31210665 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
31210599 TAGGTGTTAT
*
31210609 ATTTTAACGAAACTATAAGGTTTTTAC
1 ATTTTAACGAAACCATAAGGTTTTTAC
*
31210636 ATTTTAATGAAACCATAAGGTTTTTAC
1 ATTTTAACGAAACCATAAGGTTTTTAC
31210663 ATT
1 ATT
31210666 CAGATTTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (27 bp):
ATTTTAACGAAACCATAAGGTTTTTAC
Found at i:31212927 original size:11 final size:11
Alignment explanation
Indices: 31212905--31212948 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
31212895 AACTAATCCT
31212905 CTCTCAAATTTC
1 CTCTC-AATTTC
31212917 CTCTCAATTTC
1 CTCTCAATTTC
*
31212928 CTCTAAATTTC
1 CTCTCAATTTC
31212939 CTCTCAATTT
1 CTCTCAATTT
31212949 TGGAGTTGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 25 0.83
12 5 0.17
ACGTcount: A:0.23, C:0.32, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:31212937 original size:22 final size:23
Alignment explanation
Indices: 31212905--31212948 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
31212895 AACTAATCCT
31212905 CTCTCAAATTTCCTCTCAATTTC
1 CTCTCAAATTTCCTCTCAATTTC
31212928 CTCT-AAATTTCCTCTCAATTT
1 CTCTCAAATTTCCTCTCAATTT
31212949 TGGAGTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.23, C:0.32, G:0.00, T:0.45
Consensus pattern (23 bp):
CTCTCAAATTTCCTCTCAATTTC
Found at i:31213612 original size:24 final size:23
Alignment explanation
Indices: 31213573--31213618 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
31213563 TTTGGTGCTA
31213573 TTATTTTTCTACTGTTTTTGTTG
1 TTATTTTTCTACTGTTTTTGTTG
*
31213596 TTATTTTTGCTATTGTTTTTGTT
1 TTATTTTT-CTACTGTTTTTGTT
31213619 ATTTGTACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.09, C:0.07, G:0.13, T:0.72
Consensus pattern (23 bp):
TTATTTTTCTACTGTTTTTGTTG
Found at i:31214720 original size:9 final size:9
Alignment explanation
Indices: 31214670--31214719 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
31214660 TTTGGTTAAA
31214670 AATTAACCG
1 AATTAACCG
*
31214679 AATTAACTG
1 AATTAACCG
*
31214688 AATTAACCA
1 AATTAACCG
31214697 AATTAACCG
1 AATTAACCG
*
31214706 AATTACCCG
1 AATTAACCG
31214715 AATTA
1 AATTA
31214720 CTCGAATTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.46, C:0.20, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:31214725 original size:9 final size:9
Alignment explanation
Indices: 31214670--31214727 Score: 53
Period size: 9 Copynumber: 6.4 Consensus size: 9
31214660 TTTGGTTAAA
*
31214670 AATTAACCG
1 AATTACCCG
* *
31214679 AATTAACTG
1 AATTACCCG
* *
31214688 AATTAACCA
1 AATTACCCG
*
31214697 AATTAACCG
1 AATTACCCG
31214706 AATTACCCG
1 AATTACCCG
*
31214715 AATTACTCG
1 AATTACCCG
31214724 AATT
1 AATT
31214728 GAATCACTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (9 bp):
AATTACCCG
Found at i:31214725 original size:18 final size:19
Alignment explanation
Indices: 31214670--31214727 Score: 77
Period size: 18 Copynumber: 3.2 Consensus size: 19
31214660 TTTGGTTAAA
31214670 AATTAACCGAATTAACT-G
1 AATTAACCGAATTAACTCG
*
31214688 AATTAACCAAATTAAC-CG
1 AATTAACCGAATTAACTCG
*
31214706 AATTACCCGAATT-ACTCG
1 AATTAACCGAATTAACTCG
31214724 AATT
1 AATT
31214728 GAATCACTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.06
18 33 0.94
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (19 bp):
AATTAACCGAATTAACTCG
Found at i:31214757 original size:17 final size:17
Alignment explanation
Indices: 31214735--31214797 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
31214725 ATTGAATCAC
31214735 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
*** *
31214752 TACATAAGTCTTTGAATCAC
1 TACATAA-T-TAAAAAT-AT
*
31214772 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
31214789 TACATAATT
1 TACATAATT
31214798 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 17 0.50
18 4 0.12
19 5 0.15
20 8 0.24
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:31214772 original size:37 final size:37
Alignment explanation
Indices: 31214726--31214800 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
31214716 ATTACTCGAA
*
31214726 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
31214763 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
31214800 T
1 T
31214801 GAAATTAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:31215012 original size:39 final size:38
Alignment explanation
Indices: 31214930--31215044 Score: 203
Period size: 39 Copynumber: 3.0 Consensus size: 38
31214920 CTTAAGAGTT
*
31214930 GACTTTAGTTTTATTTTTATTGGGTTGGTAATTGGGTA
1 GACTTTAGTTTTAGTTTTATTGGGTTGGTAATTGGGTA
31214968 GACTTTAGTTTTAGTTTTATTGGGTTGGATAATTGGGTA
1 GACTTTAGTTTTAGTTTTATTGGGTTGG-TAATTGGGTA
31215007 GACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGT
1 GACTTTAGTTTTAGTTTTATTGGGTT-GGTAATTGGGT
31215045 TGGGTTGGAT
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
38 27 0.36
39 45 0.61
40 2 0.03
ACGTcount: A:0.18, C:0.03, G:0.29, T:0.50
Consensus pattern (38 bp):
GACTTTAGTTTTAGTTTTATTGGGTTGGTAATTGGGTA
Found at i:31215043 original size:13 final size:13
Alignment explanation
Indices: 31215025--31215049 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31215015 TTTTAGTTTT
31215025 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
31215038 ATTGGGTTGGGT
1 ATTGGGTTGGGT
31215050 TGGATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:31224125 original size:18 final size:18
Alignment explanation
Indices: 31224102--31224138 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
31224092 GCCAAGTGTA
* *
31224102 TATCCTAGCCTTTATATG
1 TATCCTAACCCTTATATG
31224120 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
31224138 T
1 T
31224139 TTTCTTTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:31224663 original size:18 final size:18
Alignment explanation
Indices: 31224615--31224655 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
31224605 TTTGGTTAAA
31224615 AATTAACCGAATTAACTG
1 AATTAACCGAATTAACTG
* *
31224633 AATTAACCAAATTACCTG
1 AATTAACCGAATTAACTG
31224651 AATTA
1 AATTA
31224656 CTCGAATTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (18 bp):
AATTAACCGAATTAACTG
Found at i:31224730 original size:17 final size:17
Alignment explanation
Indices: 31224671--31224733 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
31224661 ATTGAATCAC
*
31224671 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
** * *
31224688 TACATAAGCCTTTGAATCAC
1 TACATAA---TTAAAAACAT
31224708 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
31224725 TACATAATT
1 TACATAATT
31224734 TTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 22 0.65
20 12 0.35
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:31224943 original size:17 final size:18
Alignment explanation
Indices: 31224921--31224958 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
31224911 TTTTAGTTTT
31224921 ATTGGGTTGGGTTGG-TA
1 ATTGGGTTGGGTTGGATA
31224938 ATTGGGTTGGGTTGGATA
1 ATTGGGTTGGGTTGGATA
31224956 ATT
1 ATT
31224959 TTATTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (18 bp):
ATTGGGTTGGGTTGGATA
Found at i:31225384 original size:62 final size:59
Alignment explanation
Indices: 31225270--31225388 Score: 150
Period size: 62 Copynumber: 2.0 Consensus size: 59
31225260 GTACAAACTG
* ****
31225270 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAGTAAATTA
1 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAG-AAATTA
31225330 TTTTTATATT-TTGTCCAATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAGAAAT
1 TTTTTATATTGTT-T-C-ATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAGAAAT
31225389 AATGCAACAT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
59 2 0.04
60 11 0.22
61 5 0.10
62 33 0.65
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.47
Consensus pattern (59 bp):
TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGACAATAGAAATTA
Found at i:31227383 original size:64 final size:64
Alignment explanation
Indices: 31227282--31227411 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
31227272 TTAGATTTGG
31227282 ATTTAACCACGTGGTAGTTAATCCCGTTCATGATGCTATATTGTTTCAATACACCGAAAAAACT
1 ATTTAACCACGTGGTAGTTAATCCCGTTCATGATGCTATATTGTTTCAATACACCGAAAAAACT
*
31227346 ATTTAACCACGTGGTAGTTAATCCTGTTCATGATGCTATATTGTTTCAATACACCGAAAAAACT
1 ATTTAACCACGTGGTAGTTAATCCCGTTCATGATGCTATATTGTTTCAATACACCGAAAAAACT
31227410 AT
1 AT
31227412 CCTTACTAGA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (64 bp):
ATTTAACCACGTGGTAGTTAATCCCGTTCATGATGCTATATTGTTTCAATACACCGAAAAAACT
Found at i:31228422 original size:13 final size:13
Alignment explanation
Indices: 31228404--31228431 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
31228394 CTAAACTTCT
31228404 CTAATTTTTCTTG
1 CTAATTTTTCTTG
31228417 CTAATTTTTCTTG
1 CTAATTTTTCTTG
31228430 CT
1 CT
31228432 GTAACTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.18, G:0.07, T:0.61
Consensus pattern (13 bp):
CTAATTTTTCTTG
Found at i:31228642 original size:125 final size:126
Alignment explanation
Indices: 31228487--31228847 Score: 386
Period size: 125 Copynumber: 2.9 Consensus size: 126
31228477 AAGGGTAAGT
* **
31228487 AAGAACTATTGTAGAAAAAGAGCGTCCACGTAGAAACTTTTTTCAGTAATTTTGCTAATGGTGCA
1 AAGAACTACTGTAGAAAAAGAGCGTCCACGTAGAAACTTTTTTCAGTAATTTTGCTAACAGTGCA
* * *
31228552 TCCTGCTTGAAGCGTTTTTTATATTAACTTTTCAGAACCATCTTCTCATAATT-ATTTTTC
66 TCCTGCTTGAAGCGTTTTTTACATTAACTTTTCAAAACCATCTTCTCAAAATTAATTTTTC
* * *
31228612 AAGAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
1 AAGAACTACTGTAGAAAAAGAGCGTCCACGTAGAAACTTTTTTCAGTAATTTTGCTAACAGTGCA
** **
31228677 TCCTGCTTGAAGCGTTTTTTACATTATTTTTTCAAAACTGTCTTCTCAAAATTAATTTTTC
66 TCCTGCTTGAAGCGTTTTTTACATTAACTTTTCAAAACCATCTTCTCAAAATTAATTTTTC
* * * * * * * * * ** * * *
31228738 CAGAAACTATTATAAAAAAAGAACATCCACAT-GAGAGCTTTTTTTTAGTGCTTTTGCTGAGAAT
1 AAG-AACTACTGTAGAAAAAGAGCGTCCACGTAGA-AAC-TTTTTTCAGTAATTTTGCTAACAGT
* * **
31228802 GCATCCTGCTTGAAGTGTTTTTGT-CACTATTTTTTCAAAACCATCT
63 GCATCCTGCTTGAAGCGTTTTT-TACATTAACTTTTCAAAACCATCT
31228848 CATTATTATT
Statistics
Matches: 201, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
125 105 0.52
126 10 0.05
127 25 0.12
128 60 0.30
129 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (126 bp):
AAGAACTACTGTAGAAAAAGAGCGTCCACGTAGAAACTTTTTTCAGTAATTTTGCTAACAGTGCA
TCCTGCTTGAAGCGTTTTTTACATTAACTTTTCAAAACCATCTTCTCAAAATTAATTTTTC
Found at i:31229010 original size:34 final size:33
Alignment explanation
Indices: 31228973--31229051 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
31228963 TTATTTTTAA
31228973 AAAAACCTAAACCCTAATTTAATTAA-TTTTCTT
1 AAAAACCTAAACCCTAATTTAATTAATTTTTC-T
*
31229006 AAAAACCTTAAA-CCTAATTTGATTAATTTTTCT
1 AAAAACC-TAAACCCTAATTTAATTAATTTTTCT
*
31229039 AAAATCCTAAACC
1 AAAAACCTAAACC
31229052 TTGATTTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
32 4 0.10
33 28 0.68
34 9 0.22
ACGTcount: A:0.43, C:0.19, G:0.01, T:0.37
Consensus pattern (33 bp):
AAAAACCTAAACCCTAATTTAATTAATTTTTCT
Found at i:31229070 original size:27 final size:27
Alignment explanation
Indices: 31229024--31229106 Score: 98
Period size: 27 Copynumber: 3.0 Consensus size: 27
31229014 TAAACCTAAT
*
31229024 TTGATTAATTTTTCTAAAATC-CTAAACC
1 TTGATTTA-TTTT-TAAAATCTCTAAACC
31229052 TTGATTTATTGTTTAAAATCTCTAAATCC
1 TTGATTTATT-TTTAAAATCTCTAAA-CC
*
31229081 -TGATTTATTTATAAAATCTCTAAACC
1 TTGATTTATTTTTAAAATCTCTAAACC
31229107 CTAAACAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
26 2 0.04
27 23 0.46
28 23 0.46
29 2 0.04
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.45
Consensus pattern (27 bp):
TTGATTTATTTTTAAAATCTCTAAACC
Found at i:31236971 original size:2 final size:2
Alignment explanation
Indices: 31236966--31236998 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
31236956 AATATATATA
31236966 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
31236999 ATTCAAACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:31237733 original size:48 final size:48
Alignment explanation
Indices: 31237678--31237771 Score: 188
Period size: 48 Copynumber: 2.0 Consensus size: 48
31237668 GCCAGCCTCA
31237678 GTTTGGCTTCCAAGAAAATCACAAGATATAATAAGATTGAAGCGTTCG
1 GTTTGGCTTCCAAGAAAATCACAAGATATAATAAGATTGAAGCGTTCG
31237726 GTTTGGCTTCCAAGAAAATCACAAGATATAATAAGATTGAAGCGTT
1 GTTTGGCTTCCAAGAAAATCACAAGATATAATAAGATTGAAGCGTT
31237772 GAGTTTCGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (48 bp):
GTTTGGCTTCCAAGAAAATCACAAGATATAATAAGATTGAAGCGTTCG
Found at i:31239890 original size:318 final size:319
Alignment explanation
Indices: 31239295--31239932 Score: 1127
Period size: 318 Copynumber: 2.0 Consensus size: 319
31239285 AATGCATGCT
* *
31239295 TTTATATGTGTTTCATCTATGGCACCAATACAATCCTTTAAAATAAATAATGAGATAAAAGTTAG
1 TTTATATGTGTTCCATCTATGGCACCAATACAATCCTTTAAAATAAATAATAAGATAAAAGTTAG
*
31239360 AAATAATTTATATTTTAAAAATATAAAAATTGTGTAAATTTTACCTTAAAGTGATGCCAATATCT
66 AAATAATTTATATTTTAAAAATATAAAAATTGTGTAAATTTTACCTTAAAATGATGCCAATATCT
*
31239425 AGTATCATGTCGAATATGGTTCGGTACTTCCTCGAGTTGACCTTCAGTGGGTTTAATCGTGTCTA
131 AGTATCATGTCGAATATGGTTCGGTACTTCCTCGAATTGACCTTCAGTGGGTTTAATCGTGTCTA
**
31239490 TTCCCATTCGAGCAAATATATGCAACATATCAGTAAAAATTTGACTAACAGTTTCCCCAGATCGT
196 TTCCCATTCGAGCAAATATATGCAACATATCAGTAAAAATTCAACTAACAGTTTCCCCAGATCGT
*
31239555 TGAAATCGCTTTGTTGCATTTGAATTTGATTCTCTATTTCCAAGAATATACAATGATAA
261 TGAAATCGCTCTGTTGCATTTGAATTTGATTCTCTATTTCCAAGAATATACAATGATAA
*
31239614 TTTATGTGTGTTCCATCTATGGTC-CCAATACAATCCTTTAAAATAAATAATAAGAT-AAAGTTA
1 TTTATATGTGTTCCATCTATGG-CACCAATACAATCCTTTAAAATAAATAATAAGATAAAAGTTA
31239677 GAAATAATTTATATTTTAAAAATATAAAAATTGTGTAAATTTTACCTTAAAATGATGCCAATATC
65 GAAATAATTTATATTTTAAAAATATAAAAATTGTGTAAATTTTACCTTAAAATGATGCCAATATC
* * *
31239742 TTGTATCATGTCGAATATGGTTCGGTATTTCCTCGAATTGACCTTTAGTGGGTTTAATCGTGTCT
130 TAGTATCATGTCGAATATGGTTCGGTACTTCCTCGAATTGACCTTCAGTGGGTTTAATCGTGTCT
*
31239807 ATTCCCATTCGAGCAAATATATGTAACATATCAGTAAAAATTCAACTAACAGTTTCCCCAGATCG
195 ATTCCCATTCGAGCAAATATATGCAACATATCAGTAAAAATTCAACTAACAGTTTCCCCAGATCG
* *
31239872 TTGAAATCGCTCTGTTGCATTTGAATTTGATTCTCTATTTCTAAGAATGTACAATGATAA
260 TTGAAATCGCTCTGTTGCATTTGAATTTGATTCTCTATTTCCAAGAATATACAATGATAA
31239932 T
1 T
31239933 GCTAACTTCT
Statistics
Matches: 304, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
318 252 0.83
319 51 0.17
320 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (319 bp):
TTTATATGTGTTCCATCTATGGCACCAATACAATCCTTTAAAATAAATAATAAGATAAAAGTTAG
AAATAATTTATATTTTAAAAATATAAAAATTGTGTAAATTTTACCTTAAAATGATGCCAATATCT
AGTATCATGTCGAATATGGTTCGGTACTTCCTCGAATTGACCTTCAGTGGGTTTAATCGTGTCTA
TTCCCATTCGAGCAAATATATGCAACATATCAGTAAAAATTCAACTAACAGTTTCCCCAGATCGT
TGAAATCGCTCTGTTGCATTTGAATTTGATTCTCTATTTCCAAGAATATACAATGATAA
Found at i:31247359 original size:17 final size:17
Alignment explanation
Indices: 31247337--31247390 Score: 81
Period size: 17 Copynumber: 3.2 Consensus size: 17
31247327 CAAATATGGA
*
31247337 ATGTAATCTTCGAAGAT
1 ATGTAATCTTAGAAGAT
* *
31247354 ATGTAATCTTGGATGAT
1 ATGTAATCTTAGAAGAT
31247371 ATGTAATCTTAGAAGAT
1 ATGTAATCTTAGAAGAT
31247388 ATG
1 ATG
31247391 ATTCTGTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.37
Consensus pattern (17 bp):
ATGTAATCTTAGAAGAT
Found at i:31247403 original size:24 final size:23
Alignment explanation
Indices: 31247375--31247421 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
31247365 GATGATATGT
31247375 AATCTTAGAAGATATGATTCTGTA
1 AATCTTAG-AGATATGATTCTGTA
* *
31247399 AATCTTAGAGATTTGATTTTGTA
1 AATCTTAGAGATATGATTCTGTA
31247422 GATTGTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (23 bp):
AATCTTAGAGATATGATTCTGTA
Found at i:31248825 original size:9 final size:9
Alignment explanation
Indices: 31248813--31248849 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
31248803 ATCAAGATTT
31248813 GAAATCTTG
1 GAAATCTTG
31248822 GAAATCTTG
1 GAAATCTTG
31248831 GAAATCTTG
1 GAAATCTTG
31248840 GAAATCTTG
1 GAAATCTTG
31248849 G
1 G
31248850 TCCAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (9 bp):
GAAATCTTG
Found at i:31251636 original size:30 final size:30
Alignment explanation
Indices: 31251600--31251674 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
31251590 TGGTTGACCC
* *
31251600 ATCCCTTTTCATAATTCGATAACCGAAGTT
1 ATCCCTTTTCATAATTCGACAACCGAAGCT
* * * *
31251630 ATCCCTTTTTATAGTTTGACAGCCGAAGCT
1 ATCCCTTTTCATAATTCGACAACCGAAGCT
31251660 ATCCC-TTTCATAATT
1 ATCCCTTTTCATAATT
31251675 TGATGGTAGT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
29 8 0.22
30 29 0.78
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGACAACCGAAGCT
Found at i:31251692 original size:29 final size:30
Alignment explanation
Indices: 31251660--31251852 Score: 103
Period size: 30 Copynumber: 6.5 Consensus size: 30
31251650 AGCCGAAGCT
31251660 ATCCC-TTTCATAATTTGATGGTAGTCACC
1 ATCCCTTTTCATAATTTGATGGTAGTCACC
*** ** *
31251689 ATCCCTTTTCATTGCTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTAGTCACC
** * *
31251719 ATCCCTTTTCATAATTTGATACCT-G-AAGCT
1 ATCCCTTTTCATAATTTGAT-GGTAGTCA-CC
* * ** ** *
31251749 ATCCCTTTTCATAAATCGACAGCCG-AATCC
1 ATCCCTTTTCATAATTTGATGGTAGTCA-CC
*
31251779 ATCCCTTTTCAT-ATTTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTT-GATGGTAGTCACC
* * *
31251809 ATCCCTTTTCAT--TGTTGACGGTCGTCAAC
1 ATCCCTTTTCATAAT-TTGATGGTAGTCACC
31251838 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
31251853 CGATAACTGA
Statistics
Matches: 124, Mismatches: 31, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
29 32 0.26
30 89 0.72
31 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTAGTCACC
Found at i:31251811 original size:30 final size:29
Alignment explanation
Indices: 31251777--31251850 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 29
31251767 ACAGCCGAAT
31251777 CCATCCCTTTTCATATTTCGATGGTCGTCA
1 CCATCCCTTTTCATATTT-GATGGTCGTCA
*
31251807 CCATCCCTTTTCAT-TGTTGACGGTCGTCA
1 CCATCCCTTTTCATAT-TTGATGGTCGTCA
*
31251836 ACATCCCTTTTCATA
1 CCATCCCTTTTCATA
31251851 ATCGATAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 24 0.60
30 16 0.40
ACGTcount: A:0.18, C:0.31, G:0.12, T:0.39
Consensus pattern (29 bp):
CCATCCCTTTTCATATTTGATGGTCGTCA
Found at i:31251832 original size:119 final size:119
Alignment explanation
Indices: 31251598--31251878 Score: 372
Period size: 119 Copynumber: 2.4 Consensus size: 119
31251588 GATGGTTGAC
* * ** * *
31251598 CCATCCCTTTTCATAATTCGATAACC-GAAGTTATCCCTTTTTATAGTTTGACAGCCGAAGCTAT
1 CCATCCCTTTTCATAATTCGAT-ACCTGAAGCTATCCCTTTTCATAAATCGACAGCCGAAGCCAT
*
31251662 CCCTTTCATAATTTGATGGTAGTCACCATCCCTTTTCATTGCTCAATGGTCGTCA
65 CCCTTTCATAATTTGATGGTAGTCACCATCCCTTTTCATTGCTCAACGGTCGTCA
* *
31251717 CCATCCCTTTTCATAATTTGATACCTGAAGCTATCCCTTTTCATAAATCGACAGCCGAATCCATC
1 CCATCCCTTTTCATAATTCGATACCTGAAGCTATCCCTTTTCATAAATCGACAGCCGAAGCCATC
* **
31251782 CCTTTTCAT-ATTTCGATGGTCGTCACCATCCCTTTTCATTG-TTGACGGTCGTCA
66 CC-TTTCATAATTT-GATGGTAGTCACCATCCCTTTTCATTGCTCAACGGTCGTCA
* * *
31251836 ACATCCCTTTTCATAA-TCGATAACTGAAGCTATCCTTTTTCAT
1 CCATCCCTTTTCATAATTCGATACCTGAAGCTATCCCTTTTCAT
31251879 TTGCTGATGA
Statistics
Matches: 143, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
118 27 0.19
119 84 0.59
120 32 0.22
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.37
Consensus pattern (119 bp):
CCATCCCTTTTCATAATTCGATACCTGAAGCTATCCCTTTTCATAAATCGACAGCCGAAGCCATC
CCTTTCATAATTTGATGGTAGTCACCATCCCTTTTCATTGCTCAACGGTCGTCA
Found at i:31254358 original size:25 final size:27
Alignment explanation
Indices: 31254319--31254388 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 27
31254309 TTGTACATGT
** *
31254319 ATGCTCACATAAGCTGT-A-AATTAGA
1 ATGCTCACACGAGCTGTGATAATGAGA
* *
31254344 ATGCTCACACGAGCTGTGATAATGGGC
1 ATGCTCACACGAGCTGTGATAATGAGA
*
31254371 CTGCTCACACGAGCTGTG
1 ATGCTCACACGAGCTGTG
31254389 GGTCGAAACG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 15 0.41
26 1 0.03
27 21 0.57
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (27 bp):
ATGCTCACACGAGCTGTGATAATGAGA
Found at i:31258957 original size:18 final size:18
Alignment explanation
Indices: 31258934--31258990 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
31258924 TCAGTGAAAA
*
31258934 TGGGCTCACACGCCTATG
1 TGGGCTCACACGCCCATG
31258952 TGGGCTCACACGCCCATG
1 TGGGCTCACACGCCCATG
* * *
31258970 TGGGCCCACGCGCCCGTG
1 TGGGCTCACACGCCCATG
31258988 TGG
1 TGG
31258991 CCCACTCGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.12, C:0.37, G:0.33, T:0.18
Consensus pattern (18 bp):
TGGGCTCACACGCCCATG
Found at i:31261662 original size:14 final size:13
Alignment explanation
Indices: 31261639--31261671 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
31261629 ATAGGATTGT
31261639 ATTTAGTGAAAGG
1 ATTTAGTGAAAGG
31261652 ATTTGAGTGAAAGG
1 ATTT-AGTGAAAGG
31261666 ATTTAG
1 ATTTAG
31261672 CTCAAAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (13 bp):
ATTTAGTGAAAGG
Found at i:31265144 original size:24 final size:23
Alignment explanation
Indices: 31265116--31265162 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
31265106 GATGATATGC
31265116 AATCTTAGA-AGTTATGATTTTGTA
1 AATCTTAGAGA-TT-TGATTTTGTA
31265140 AATCTTAGAGATTTGATTTTGTA
1 AATCTTAGAGATTTGATTTTGTA
31265163 GATTGCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.45
24 11 0.50
25 1 0.05
ACGTcount: A:0.32, C:0.04, G:0.17, T:0.47
Consensus pattern (23 bp):
AATCTTAGAGATTTGATTTTGTA
Found at i:31265160 original size:23 final size:24
Alignment explanation
Indices: 31265116--31265162 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
31265106 GATGATATGC
31265116 AATCTTAGAAGTTATGATTTTGTA
1 AATCTTAGAAGTTATGATTTTGTA
31265140 AATCTTAG-AGATT-TGATTTTGTA
1 AATCTTAGAAG-TTATGATTTTGTA
31265163 GATTGCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.32, C:0.04, G:0.17, T:0.47
Consensus pattern (24 bp):
AATCTTAGAAGTTATGATTTTGTA
Found at i:31266098 original size:34 final size:34
Alignment explanation
Indices: 31266043--31266108 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
31266033 AATTATTGGA
*
31266043 AATTAATTAAAAAACATAAAATTTTATAAAAAAT
1 AATTAATTAAAAAACACAAAATTTTATAAAAAAT
* *
31266077 AATTGATTAAAAACCACAAAATTTTATAAAAA
1 AATTAATTAAAAAACACAAAATTTTATAAAAA
31266109 CAATTGTTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (34 bp):
AATTAATTAAAAAACACAAAATTTTATAAAAAAT
Found at i:31270384 original size:25 final size:25
Alignment explanation
Indices: 31270338--31270385 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
31270328 TTTAGTTTGA
* *
31270338 TTAATTAATAAAATTTATATATAAT
1 TTAATTAATAAAATTGACATATAAT
* *
31270363 TTAATTAATGAAATTGGCATATA
1 TTAATTAATAAAATTGACATATA
31270386 TCTTAAGATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (25 bp):
TTAATTAATAAAATTGACATATAAT
Found at i:31271777 original size:248 final size:248
Alignment explanation
Indices: 31271339--31271841 Score: 961
Period size: 248 Copynumber: 2.0 Consensus size: 248
31271329 AAAATATGAT
*
31271339 TTATTTTATTTTATAAATAATATATGACACGCTTAATGTTTAATAAAACATGGAAAAAGGAAAGA
1 TTATTTTATTTTATAAATAATATATGACACGCTTAATGTTTAATAAAACATGGAAAAAAGAAAGA
*
31271404 AAATGTGAATTCTGTCATCTTTTTCATTAGAACCGAAAACCAAAGGGGGAAAGGGTTCTCGCTCA
66 AAATGTGAATTCTGTCATCTTTTTCATTAAAACCGAAAACCAAAGGGGGAAAGGGTTCTCGCTCA
31271469 TGACAAGCTTAACCTTGCTAATTGGTAAGTTGTTTTTAGTCTGTTTCTTATAATTTTTATGTTTT
131 TGACAAGCTTAACCTTGCTAATTGGTAAGTTGTTTTTAGTCTGTTTCTTATAATTTTTATGTTTT
31271534 TGGAATCTTAGGAGCTTGATCTATCTAACCCAGGGTGTAACTCCCCAAAATTC
196 TGGAATCTTAGGAGCTTGATCTATCTAACCCAGGGTGTAACTCCCCAAAATTC
**
31271587 TTATTTTATTTTATAAATAATATATGACACTTTTAATGTTTAATAAAACATGGAAAAAAGAAAGA
1 TTATTTTATTTTATAAATAATATATGACACGCTTAATGTTTAATAAAACATGGAAAAAAGAAAGA
31271652 AAATGTGAATTCTGTCATCTTTTTCATTAAAACCGAAAACCAAAGGGGGAAAGGGTTCTCGCTCA
66 AAATGTGAATTCTGTCATCTTTTTCATTAAAACCGAAAACCAAAGGGGGAAAGGGTTCTCGCTCA
*
31271717 TGACAAGCTTAACCTTGCTAATTGGTAAGTTGTTTTTAGTCTGTTTCTTGTAATTTTTATGTTTT
131 TGACAAGCTTAACCTTGCTAATTGGTAAGTTGTTTTTAGTCTGTTTCTTATAATTTTTATGTTTT
31271782 TGGAATCTTAGGAGCTTGATCTATCTAACCCAGGGTGTAACTCCCCAAAATTC
196 TGGAATCTTAGGAGCTTGATCTATCTAACCCAGGGTGTAACTCCCCAAAATTC
31271835 TTATTTT
1 TTATTTT
31271842 TGTTATTGTG
Statistics
Matches: 250, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
248 250 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37
Consensus pattern (248 bp):
TTATTTTATTTTATAAATAATATATGACACGCTTAATGTTTAATAAAACATGGAAAAAAGAAAGA
AAATGTGAATTCTGTCATCTTTTTCATTAAAACCGAAAACCAAAGGGGGAAAGGGTTCTCGCTCA
TGACAAGCTTAACCTTGCTAATTGGTAAGTTGTTTTTAGTCTGTTTCTTATAATTTTTATGTTTT
TGGAATCTTAGGAGCTTGATCTATCTAACCCAGGGTGTAACTCCCCAAAATTC
Found at i:31274357 original size:18 final size:18
Alignment explanation
Indices: 31274322--31274366 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
31274312 TCAATAAGTG
*
31274322 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
31274340 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
31274358 AC-TTTTGAA
1 ACGTTTTGAA
31274367 TACGAATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 17 0.68
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:31282276 original size:6 final size:6
Alignment explanation
Indices: 31282265--31282290 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
31282255 GTTGCTCCAG
31282265 CAATGA CAATGA CAATGA CAATGA CA
1 CAATGA CAATGA CAATGA CAATGA CA
31282291 TATACAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.19, G:0.15, T:0.15
Consensus pattern (6 bp):
CAATGA
Found at i:31283218 original size:27 final size:27
Alignment explanation
Indices: 31283172--31283404 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
31283162 TAAGATTTTG
*
31283172 CCACAAAGGCAGTTCGTTCAGAGTACA
1 CCACAAAGGCAGTTCTTTCAGAGTACA
*
31283199 CCACAAAGGCAATTCTTTCAGAGTACA
1 CCACAAAGGCAGTTCTTTCAGAGTACA
* *
31283226 CCACAAAGGAAATTCTTTCAGAGTACA
1 CCACAAAGGCAGTTCTTTCAGAGTACA
* *
31283253 CCACAAAGGCAGTTCTTTTAGAGTACG
1 CCACAAAGGCAGTTCTTTCAGAGTACA
* * * * **
31283280 CCACCAATGCAATTCTTTTAGAGTATG
1 CCACAAAGGCAGTTCTTTCAGAGTACA
*
31283307 CCACAAAGGTAGTTCTTTCAGAGTACA
1 CCACAAAGGCAGTTCTTTCAGAGTACA
* *
31283334 CCACAAAGGTAGTACTTTCAGAGTACA
1 CCACAAAGGCAGTTCTTTCAGAGTACA
* * *
31283361 CCACAAAGGTAATTCTTTCAGAGTACG
1 CCACAAAGGCAGTTCTTTCAGAGTACA
31283388 CCACAAAGGCAGTTCTT
1 CCACAAAGGCAGTTCTT
31283405 AGTTGTCGTG
Statistics
Matches: 182, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (27 bp):
CCACAAAGGCAGTTCTTTCAGAGTACA
Found at i:31283402 original size:81 final size:81
Alignment explanation
Indices: 31283172--31283404 Score: 340
Period size: 81 Copynumber: 2.9 Consensus size: 81
31283162 TAAGATTTTG
* *
31283172 CCACAAAGGCAGTTCGTTCAGAGTACACCACAAAGGCAATTCTTTCAGAGTACACCACAAAGGAA
1 CCACAAAGGCAGTTCTTTCAGAGTACACCACAAAGGCAATTCTTTCAGAGTACGCCACAAAGGAA
*
31283237 ATTCTTTCAGAGTACA
66 GTTCTTTCAGAGTACA
* * * * * * *
31283253 CCACAAAGGCAGTTCTTTTAGAGTACGCCACCAATGCAATTCTTTTAGAGTATGCCACAAAGGTA
1 CCACAAAGGCAGTTCTTTCAGAGTACACCACAAAGGCAATTCTTTCAGAGTACGCCACAAAGGAA
31283318 GTTCTTTCAGAGTACA
66 GTTCTTTCAGAGTACA
* * * *
31283334 CCACAAAGGTAGTACTTTCAGAGTACACCACAAAGGTAATTCTTTCAGAGTACGCCACAAAGGCA
1 CCACAAAGGCAGTTCTTTCAGAGTACACCACAAAGGCAATTCTTTCAGAGTACGCCACAAAGGAA
31283399 GTTCTT
66 GTTCTT
31283405 AGTTGTCGTG
Statistics
Matches: 132, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 132 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (81 bp):
CCACAAAGGCAGTTCTTTCAGAGTACACCACAAAGGCAATTCTTTCAGAGTACGCCACAAAGGAA
GTTCTTTCAGAGTACA
Found at i:31286927 original size:11 final size:11
Alignment explanation
Indices: 31286899--31286939 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
31286889 TAAAATTTAA
31286899 TTAAAAA-ATT
1 TTAAAAATATT
*
31286909 ATAAAAATATT
1 TTAAAAATATT
*
31286920 TTATAAATATT
1 TTAAAAATATT
31286931 TTAAAAATA
1 TTAAAAATA
31286940 CATAAAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 6 0.23
11 20 0.77
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:31286960 original size:12 final size:12
Alignment explanation
Indices: 31286943--31286967 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31286933 AAAAATACAT
31286943 AAAATTCTATAA
1 AAAATTCTATAA
31286955 AAAATTCTATAA
1 AAAATTCTATAA
31286967 A
1 A
31286968 TATTTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTCTATAA
Found at i:31286986 original size:17 final size:17
Alignment explanation
Indices: 31286964--31287013 Score: 68
Period size: 16 Copynumber: 2.9 Consensus size: 17
31286954 AAAAATTCTA
31286964 TAAATATTTTATGTTAT
1 TAAATATTTTATGTTAT
31286981 TAAATATTTT-T-TATAT
1 TAAATATTTTATGT-TAT
31286997 TAAATATTTTAATGTTA
1 TAAATATTTT-ATGTTA
31287014 AATATTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.03
16 14 0.48
17 10 0.34
18 3 0.10
19 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (17 bp):
TAAATATTTTATGTTAT
Found at i:31286999 original size:16 final size:16
Alignment explanation
Indices: 31286964--31287021 Score: 66
Period size: 15 Copynumber: 3.6 Consensus size: 16
31286954 AAAAATTCTA
31286964 TAAATATTTTATGT-TAT
1 TAAATATTTT-T-TATAT
31286981 TAAATATTTTTTATAT
1 TAAATATTTTTTATAT
* *
31286997 TAAATA-TTTTAATGT
1 TAAATATTTTTTATAT
31287012 TAAATATTTT
1 TAAATATTTT
31287022 AATGTTAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
15 14 0.38
16 13 0.35
17 10 0.27
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TAAATATTTTTTATAT
Found at i:31287014 original size:15 final size:15
Alignment explanation
Indices: 31286980--31287031 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
31286970 TTTTATGTTA
* *
31286980 TTAAATATTTTTTATA
1 TTAAATA-TTTTAATG
31286996 TTAAATATTTTAATG
1 TTAAATATTTTAATG
31287011 TTAAATATTTTAATG
1 TTAAATATTTTAATG
31287026 TTAAAT
1 TTAAAT
31287032 TAATTATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
15 27 0.79
16 7 0.21
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
TTAAATATTTTAATG
Found at i:31292607 original size:3 final size:3
Alignment explanation
Indices: 31292599--31292642 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
31292589 TAGTCATTCT
31292599 ATA ATA ATA ATA ATA ATA ATA A-A ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
31292643 CGCAAAATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:31292626 original size:20 final size:20
Alignment explanation
Indices: 31292601--31292640 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
31292591 GTCATTCTAT
31292601 AATAATAATAATAATAATAA
1 AATAATAATAATAATAATAA
31292621 AATAATAATAATAATAATAA
1 AATAATAATAATAATAATAA
31292641 TACGCAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAATAATAATAATAATAA
Found at i:31292629 original size:23 final size:23
Alignment explanation
Indices: 31292599--31292642 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
31292589 TAGTCATTCT
31292599 ATAATAATAATAATAATAATAAA
1 ATAATAATAATAATAATAATAAA
31292622 ATAATAATAATAATAATAATA
1 ATAATAATAATAATAATAATA
31292643 CGCAAAATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
ATAATAATAATAATAATAATAAA
Found at i:31299887 original size:31 final size:31
Alignment explanation
Indices: 31299851--31299915 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
31299841 ATTAATCTAG
*
31299851 TGACTTAAATAAAAACTTTTGAATAGTTCAA
1 TGACTTAAATAAAAACTTTCGAATAGTTCAA
* *
31299882 TGACTTAAATGAAAACTTTCGAATAGTTTAA
1 TGACTTAAATAAAAACTTTCGAATAGTTCAA
31299913 TGA
1 TGA
31299916 TCAAATTGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.35
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCGAATAGTTCAA
Found at i:31304273 original size:28 final size:30
Alignment explanation
Indices: 31304225--31304289 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 30
31304215 ACTTACCTCA
*
31304225 TGTTTACTGTCCCAACGAACT-CTA-TTTG
1 TGTTTACTGTCCCAACAAACTCCTATTTTG
* *
31304253 TGTTTACTGTCCTAGCAAACTGCCTATTTTG
1 TGTTTACTGTCCCAACAAACT-CCTATTTTG
31304284 TGTTTA
1 TGTTTA
31304290 TTGTTGTCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 18 0.58
30 3 0.10
31 10 0.32
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (30 bp):
TGTTTACTGTCCCAACAAACTCCTATTTTG
Found at i:31304861 original size:98 final size:98
Alignment explanation
Indices: 31304689--31304883 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
31304679 ACAATAAAAT
*
31304689 TTTAAAAGAACATCAACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCAACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
31304754 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
*
31304787 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCAACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
31304852 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
31304884 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCAACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:31305177 original size:15 final size:15
Alignment explanation
Indices: 31305159--31305191 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
31305149 CAAATGCTAT
31305159 AATAATAAATACAAC
1 AATAATAAATACAAC
*
31305174 AATAATAAATACATC
1 AATAATAAATACAAC
31305189 AAT
1 AAT
31305192 GACATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:31305647 original size:19 final size:19
Alignment explanation
Indices: 31305623--31305660 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
31305613 TGTAAAATAT
31305623 TTTGAAAATATATGTATAC
1 TTTGAAAATATATGTATAC
31305642 TTTGAAAATATATGTATAC
1 TTTGAAAATATATGTATAC
31305661 GGAAAAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTGAAAATATATGTATAC
Found at i:31305665 original size:17 final size:18
Alignment explanation
Indices: 31305626--31305666 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
31305616 AAAATATTTT
*
31305626 GAAAATATATGTATACTTT
1 GAAAATATATGTATAC-TG
31305645 GAAAATATATGTATAC-G
1 GAAAATATATGTATACTG
31305662 GAAAA
1 GAAAA
31305667 ATGTTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.24
19 16 0.76
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.32
Consensus pattern (18 bp):
GAAAATATATGTATACTG
Found at i:31307100 original size:33 final size:33
Alignment explanation
Indices: 31307062--31307142 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
31307052 ACAATTGTCT
*
31307062 TAGTGGACTATCT-TTGTCATGTGTTTATTGTCCC
1 TAGTGGACTATCTCTTGTC-TGTGTTTACTG-CCC
* *
31307096 -AGTGGAGTATCTCTTTTCTGTGTTTACTGCCC
1 TAGTGGACTATCTCTTGTCTGTGTTTACTGCCC
*
31307128 TAGCGGACTATCTCT
1 TAGTGGACTATCTCT
31307143 GTGGATGCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
32 3 0.08
33 33 0.82
34 4 0.10
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (33 bp):
TAGTGGACTATCTCTTGTCTGTGTTTACTGCCC
Found at i:31309224 original size:50 final size:50
Alignment explanation
Indices: 31309146--31309338 Score: 197
Period size: 50 Copynumber: 3.7 Consensus size: 50
31309136 TTTCTTGTAC
* * * **
31309146 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATTAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATATTAG
* * * * * * **
31309196 TGCCCATGCTATGTCCCTGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATATTAG
* *
31309246 TGCCAACGCCATGTCCCAGACATGGTTTTACATGGGACATCTCATAACCTTAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCAT-A--TT-A-G
31309301 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
31309339 TCTCTTTACC
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 76 0.67
53 1 0.01
55 1 0.01
56 35 0.31
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATATTAG
Found at i:31309280 original size:100 final size:105
Alignment explanation
Indices: 31309146--31309343 Score: 244
Period size: 100 Copynumber: 1.9 Consensus size: 105
31309136 TTTCTTGTAC
* * * ** * *
31309146 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCAT-A-TT-A-G-TGCCCATGCT
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACATCTCATAACTTAATGATGCCAATGCC
*
31309206 ATGTCCCTGACATGGTCTTACAGGGGACCTCTCATCTCGG
66 ATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
31309246 TGCCAACGCCATGTCCCAGACATGGTTTTACATGGGACATCTCATAACCTTAATGATGCCAATGC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACATCTCATAA-CTTAATGATGCCAATGC
* *
31309311 CATGTCCCAGACATGGTCTTACATGGGATCTCT
65 CATGTCCCAGACATGGTCTTACAGGGGACCTCT
31309344 TTACCCAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
100 38 0.47
101 1 0.01
103 2 0.03
104 1 0.01
105 1 0.01
106 37 0.46
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (105 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACATCTCATAACTTAATGATGCCAATGCC
ATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:31315273 original size:31 final size:28
Alignment explanation
Indices: 31315229--31315291 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 28
31315219 AGCGTAAAGG
*
31315229 CTAAATTTTAATTTTAT-CAAATTTAGTCT
1 CTAAATTTTAATTTT-TGAAAATTTAGT-T
31315258 CTAAACTTTTCAATTTTTGAAAATTTAGTT
1 CTAAA-TTTT-AATTTTTGAAAATTTAGTT
31315288 CTAA
1 CTAA
31315292 TCAAATGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 5 0.17
30 10 0.33
31 15 0.50
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (28 bp):
CTAAATTTTAATTTTTGAAAATTTAGTT
Found at i:31319356 original size:37 final size:36
Alignment explanation
Indices: 31319305--31319380 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
31319295 ACAGCAAAAA
*
31319305 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
31319341 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
31319378 TAA
1 TAA
31319381 AGTGATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:31320835 original size:90 final size:90
Alignment explanation
Indices: 31320659--31320898 Score: 250
Period size: 90 Copynumber: 2.6 Consensus size: 90
31320649 CAGTTTAAAT
* * * * * * * *
31320659 ATTTTGTGAATTCATCAAGTCTGTCTCAATA-GAACCACCAGCCAAAGCATGGGATATGAATTCA
1 ATTTAGTGAATTCATCAAGTCCGTCTTAACATG-ACCA-C--CCAAACCCTGGGTTATGAAATCA
* * *
31320723 TTAAGAATATTTAGTGGCTCATCCTATAA
62 TTAAGAACATCTAGTAGCTCATCCTATAA
* * *
31320752 ATTTAGT-AGGTTTATCAAGTCCGTCTTAATATGACCACCCAAACCCTGGGTTATGAAATCATTA
1 ATTTAGTGA-ATTCATCAAGTCCGTCTTAACATGACCACCCAAACCCTGGGTTATGAAATCATTA
* *
31320816 AGAGCATCTAGTAGTTCATCCTATAA
65 AGAACATCTAGTAGCTCATCCTATAA
* * *
31320842 ATTTAGTGAATTCATTAAGTTCGTCTTAACATGACCACCCAAACTCTGGGTTATGAA
1 ATTTAGTGAATTCATCAAGTCCGTCTTAACATGACCACCCAAACCCTGGGTTATGAA
31320899 CTTATTAAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
90 92 0.74
91 1 0.01
92 2 0.02
93 28 0.23
94 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (90 bp):
ATTTAGTGAATTCATCAAGTCCGTCTTAACATGACCACCCAAACCCTGGGTTATGAAATCATTAA
GAACATCTAGTAGCTCATCCTATAA
Found at i:31324202 original size:22 final size:23
Alignment explanation
Indices: 31324175--31324222 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
31324165 CCCATGCCAC
31324175 AGTCCAAAA-AACAATAATAA-AA
1 AGTCCAAAATAACAA-AATAATAA
*
31324197 AGTCCAAAATACCAAAATAATAA
1 AGTCCAAAATAACAAAATAATAA
31324220 AGT
1 AGT
31324223 GTAAAACGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.62, C:0.15, G:0.06, T:0.17
Consensus pattern (23 bp):
AGTCCAAAATAACAAAATAATAA
Found at i:31324639 original size:30 final size:27
Alignment explanation
Indices: 31324578--31324640 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 27
31324568 CCAAGCCACA
**
31324578 AGATAATGTGGACAAGCTGCCAAATAC
1 AGATAATGTGGACAAGCCACCAAATAC
31324605 AGATACATGTGGACAAGCCACCAGAATCAC
1 AGATA-ATGTGGACAAGCCACCA-AAT-AC
31324635 AGATAA
1 AGATAA
31324641 ACTGCCAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 5 0.16
28 15 0.48
29 4 0.13
30 7 0.23
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.16
Consensus pattern (27 bp):
AGATAATGTGGACAAGCCACCAAATAC
Found at i:31328695 original size:24 final size:24
Alignment explanation
Indices: 31328663--31328782 Score: 150
Period size: 24 Copynumber: 5.0 Consensus size: 24
31328653 AGGCATTCCC
*
31328663 GAATACGCCACAAAGGCACTTGCA
1 GAATACGCCACAAAGGCACTTACA
*
31328687 GAATACGCCACAAAGGCACATACA
1 GAATACGCCACAAAGGCACTTACA
* *
31328711 GAATACGCCATAAATGCACTTACA
1 GAATACGCCACAAAGGCACTTACA
* * *
31328735 AAATACACCACAAAGGAACTTACA
1 GAATACGCCACAAAGGCACTTACA
* * *
31328759 AAATACGCCATAATGGCACTTACA
1 GAATACGCCACAAAGGCACTTACA
31328783 TAATCACGTG
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 82 1.00
ACGTcount: A:0.44, C:0.27, G:0.14, T:0.15
Consensus pattern (24 bp):
GAATACGCCACAAAGGCACTTACA
Found at i:31339244 original size:36 final size:36
Alignment explanation
Indices: 31339197--31339269 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
31339187 CTCATTTGAT
31339197 TTGTACCTAATGACTTATTAATGCAAGCATAACATA
1 TTGTACCTAATGACTTATTAATGCAAGCATAACATA
31339233 TTGTACCTAATGACTTATTAATGCAAGCATAACATA
1 TTGTACCTAATGACTTATTAATGCAAGCATAACATA
31339269 T
1 T
31339270 ATGCATACTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (36 bp):
TTGTACCTAATGACTTATTAATGCAAGCATAACATA
Found at i:31350701 original size:260 final size:261
Alignment explanation
Indices: 31350240--31350765 Score: 921
Period size: 260 Copynumber: 2.0 Consensus size: 261
31350230 ATTCATACGA
*
31350240 ACTTACCTGGCTAAATTGTAAAAATTTCAAAGTACAAGGGCATTTTTACCATTCTCCTCGATTTT
1 ACTTACCTGGCTAAATTGTAAAAATGTCAAAGTACAAGGGCATTTTTACCATTCTCCTCGATTTT
* *
31350305 CCATCCGATCTTGATCTAAATTAATAATTTCATTCAATCTATTAATTTAGACAGTAAAAAATGTA
66 CCATCCAATCTTGATCTAAATTAATAATTTCAATCAATCTATTAATTTAGACAGTAAAAAATGTA
*
31350370 TTTTATGCAATTTAGTCATTATTTACATTTTTAAAAAATTACCCCTAAAGTTTTACTTTTGTTCA
131 TTTAATGCAATTTAGTCATTATTTACATTTTTAAAAAATTACCCCTAAAGTTTTACTTTTGTTCA
* *
31350435 ATTTAGTCCCTAAGCCTAAAACATGCAATTTAACCATTTTTACCC-AAAATTGAGCTTAGTCGAA
196 ATTTAGTCCCTAAGCCAAAAACATGCAATTTAACCATTTTTACCCAAAAATTGAGCCTAGTCGAA
31350499 T
261 T
*
31350500 ACTTACCTGGCTAAATTGTAGAAATGTCAAAGTAC-AGGAGCATTTTTACCATTCTCCTCGATTT
1 ACTTACCTGGCTAAATTGTAAAAATGTCAAAGTACAAGG-GCATTTTTACCATTCTCCTCGATTT
*
31350564 TCCATCCAATCTTGATCTAATTTAATAATTTCAATCAATCTATTAATTTAGACAGTAAAAAATGT
65 TCCATCCAATCTTGATCTAAATTAATAATTTCAATCAATCTATTAATTTAGACAGTAAAAAATGT
* *
31350629 ATTTAATGCAATTTAGTCATTTTTTACATTTTTACAAAATTACCCCTAAAGTTTTACTTTTGTTC
130 ATTTAATGCAATTTAGTCATTATTTACATTTTTAAAAAATTACCCCTAAAGTTTTACTTTTGTTC
* *
31350694 AATTTAGTCCCTGAGCCAAAAACATGCAATTTAACCATTTTTACCCAAAAATTGAGCCTATTCGA
195 AATTTAGTCCCTAAGCCAAAAACATGCAATTTAACCATTTTTACCCAAAAATTGAGCCTAGTCGA
31350759 AT
260 AT
31350761 ACTTA
1 ACTTA
31350766 TTGCATCCAA
Statistics
Matches: 252, Mismatches: 12, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
259 3 0.01
260 226 0.90
261 23 0.09
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.38
Consensus pattern (261 bp):
ACTTACCTGGCTAAATTGTAAAAATGTCAAAGTACAAGGGCATTTTTACCATTCTCCTCGATTTT
CCATCCAATCTTGATCTAAATTAATAATTTCAATCAATCTATTAATTTAGACAGTAAAAAATGTA
TTTAATGCAATTTAGTCATTATTTACATTTTTAAAAAATTACCCCTAAAGTTTTACTTTTGTTCA
ATTTAGTCCCTAAGCCAAAAACATGCAATTTAACCATTTTTACCCAAAAATTGAGCCTAGTCGAA
T
Found at i:31352672 original size:21 final size:21
Alignment explanation
Indices: 31352648--31352690 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
31352638 TGGAATTTTT
*
31352648 AAGTTAAACAAATTTTTGAAA
1 AAGTTAAACAAAGTTTTGAAA
* *
31352669 AAGTTAAATAGAGTTTTGAAA
1 AAGTTAAACAAAGTTTTGAAA
31352690 A
1 A
31352691 CTGTAACTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.14, T:0.33
Consensus pattern (21 bp):
AAGTTAAACAAAGTTTTGAAA
Found at i:31356069 original size:40 final size:42
Alignment explanation
Indices: 31355984--31356074 Score: 114
Period size: 40 Copynumber: 2.2 Consensus size: 42
31355974 AACAAAGTAG
* *
31355984 TATCTAAATATTAATTGAGTAAAAGTAAAGTTAAACAATTACAA
1 TATCTAAATATTAATTAAGT--AAGTAAACTTAAACAATTACAA
* *
31356028 TATCTAAATATTAATTAAGT-A-TAAACTTAAATATTTACAA
1 TATCTAAATATTAATTAAGTAAGTAAACTTAAACAATTACAA
31356068 TATCTAA
1 TATCTAA
31356075 TACAAATTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 23 0.53
41 1 0.02
44 19 0.44
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (42 bp):
TATCTAAATATTAATTAAGTAAGTAAACTTAAACAATTACAA
Found at i:31373722 original size:62 final size:62
Alignment explanation
Indices: 31373617--31373803 Score: 196
Period size: 62 Copynumber: 3.0 Consensus size: 62
31373607 CATGACTCAT
* * * * * * *
31373617 ACGGCTTGGGTACACGCCCATGTCCCTAATCATGTTGTTTTATATCACAAACAGTGAGTTAC
1 ACGGCTTGGGTACAAGCCCGTGTCCCTAGTCGTGTGGTCTTATACCACAAACAGTGAGTTAC
* * * * *
31373679 ACGGCTTGGGTACATGCCCGTGTCCCTGGCCGTGTGGTCTTATACCACAAACAGTAAGGTAC
1 ACGGCTTGGGTACAAGCCCGTGTCCCTAGTCGTGTGGTCTTATACCACAAACAGTGAGTTAC
* * * * * *
31373741 ACGGCCTGAGCACAAGCCTGTGTCCCAAGTCGTGTGGTCTTGA-CCCACAAACAGTGAGTTAC
1 ACGGCTTGGGTACAAGCCCGTGTCCCTAGTCGTGTGGTCTT-ATACCACAAACAGTGAGTTAC
31373803 A
1 A
31373804 GGGCCTGGAC
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
62 101 0.99
63 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (62 bp):
ACGGCTTGGGTACAAGCCCGTGTCCCTAGTCGTGTGGTCTTATACCACAAACAGTGAGTTAC
Found at i:31373809 original size:62 final size:62
Alignment explanation
Indices: 31373656--31373823 Score: 178
Period size: 62 Copynumber: 2.7 Consensus size: 62
31373646 TCATGTTGTT
* * * * * **
31373656 TTATATCACAAACAGTGAGTTACACGGCTTGGGTACATGCCCGTGTCCCTGGCCGTGTGGTC
1 TTATACCACAAACAGTGAGTTACACGGCCTGAGCACAAGCCCGTGTCCCAAGCCGTGTGGTC
* * * *
31373718 TTATACCACAAACAGTAAGGTACACGGCCTGAGCACAAGCCTGTGTCCCAAGTCGTGTGGTC
1 TTATACCACAAACAGTGAGTTACACGGCCTGAGCACAAGCCCGTGTCCCAAGCCGTGTGGTC
* * *
31373780 TTGA-CCCACAAACAGTGAGTTACAGGGCCTG-GACACACGCCCGT
1 TT-ATACCACAAACAGTGAGTTACACGGCCTGAG-CACAAGCCCGT
31373824 ATCCATGGCT
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
61 1 0.01
62 85 0.98
63 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (62 bp):
TTATACCACAAACAGTGAGTTACACGGCCTGAGCACAAGCCCGTGTCCCAAGCCGTGTGGTC
Found at i:31375332 original size:16 final size:16
Alignment explanation
Indices: 31375313--31375348 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
31375303 ATTTGTTTTT
*
31375313 GTTCTGTATTCAGGTA
1 GTTCTGTATTCAGCTA
*
31375329 GTTCTGTATTTAGCTA
1 GTTCTGTATTCAGCTA
31375345 GTTC
1 GTTC
31375349 ATATTCTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.22, T:0.47
Consensus pattern (16 bp):
GTTCTGTATTCAGCTA
Found at i:31375606 original size:16 final size:17
Alignment explanation
Indices: 31375585--31375618 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
31375575 AAACACAACA
31375585 TTTTTAT-ATTTAAAAT
1 TTTTTATAATTTAAAAT
31375601 TTTTTATAATTTAAAAT
1 TTTTTATAATTTAAAAT
31375618 T
1 T
31375619 AAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTTATAATTTAAAAT
Found at i:31376116 original size:20 final size:20
Alignment explanation
Indices: 31376075--31376112 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
31376065 TTGAAGTTAC
*
31376075 AAATTATATAAAATAACTAT
1 AAATTATATAAAATAAATAT
*
31376095 AAATTATA-ACAATAAATA
1 AAATTATATAAAATAAATA
31376113 ATAATTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATTATATAAAATAAATAT
Found at i:31379579 original size:50 final size:50
Alignment explanation
Indices: 31379475--31379570 Score: 124
Period size: 50 Copynumber: 2.0 Consensus size: 50
31379465 ACATTAAGGG
* * *
31379475 AATGAGA--TCCCATGTAAAACCATGTCTGGGACACGGCGTTGGCTCCAA
1 AATGAGATGTCCCATGTAAAACCATGTCTGGGACACGGCATGGGCACCAA
* * *
31379523 AATGAGATGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACC
1 AATGAGATGTCCCATGTAAAACCATGTCTGGGACACGGCATGGGCACC
31379571 GATGTGAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
48 7 0.17
50 33 0.82
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (50 bp):
AATGAGATGTCCCATGTAAAACCATGTCTGGGACACGGCATGGGCACCAA
Found at i:31385752 original size:23 final size:23
Alignment explanation
Indices: 31385697--31385773 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
31385687 AGTGTTATTG
31385697 ATCAGTGGTAGCTTCGGCTACATT
1 ATCAGTGGTAGCTTCGGCTACA-T
* *
31385721 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
31385744 ATCAGTGGTAGCTTCGTCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
31385767 ATCAGTG
1 ATCAGTG
31385774 TGGCACTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 28 0.58
24 20 0.42
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:31389777 original size:42 final size:41
Alignment explanation
Indices: 31389639--31389863 Score: 199
Period size: 42 Copynumber: 5.3 Consensus size: 41
31389629 CGATGGATTT
* * * *
31389639 AGCACTTAGCAACCACCTTAAATTCAGTGATACGGGGAATC
1 AGCACATAGCAACCACCTTCAATTCAATAATACGGGGAATC
* *
31389680 AGCACATAGCAACC-CCTTTCACAGTCTAA-GATACGGTGGAATC
1 AGCACATAGCAACCACC-TTCA-ATTC-AATAATACGG-GGAATC
* * *
31389723 ACCACTTTGCAACCACCTTCATATTCAATAATACGGGGAATC
1 AGCACATAGCAACCACCTTCA-ATTCAATAATACGGGGAATC
*
31389765 AGCACATAGCAACC-CCTTTCCAATTCAAAAATACGGTGGAATC
1 AGCACATAGCAACCACC-TT-CAATTCAATAATACGG-GGAATC
* *
31389808 AGCACATAGCAACCACC-TCTAGAGTCAGTAA-ATCGGGGAATC
1 AGCACATAGCAACCACCTTC-A-ATTCAATAATA-CGGGGAATC
*
31389850 AGCACTTAGCAACC
1 AGCACATAGCAACC
31389864 CCTCGGGGAA
Statistics
Matches: 153, Mismatches: 18, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
40 2 0.01
41 19 0.12
42 66 0.43
43 62 0.41
44 4 0.03
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.21
Consensus pattern (41 bp):
AGCACATAGCAACCACCTTCAATTCAATAATACGGGGAATC
Found at i:31389783 original size:85 final size:85
Alignment explanation
Indices: 31389641--31389866 Score: 289
Period size: 85 Copynumber: 2.7 Consensus size: 85
31389631 ATGGATTTAG
*
31389641 CACTTAGCAACCACCTT-AAATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTT-CACAG
1 CACTTAGCAACCACCTTCAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCTTTCCA-AG
* *
31389704 TCTAAGATACGGTGGAATCAC
65 TCAAAAATACGGTGGAATCAC
* * * *
31389725 CACTTTGCAACCACCTTCATATTCAATAATACGGGGAATCAGCACATAGCAACCCCTTTCCAATT
1 CACTTAGCAACCACCTTCAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCTTTCCAAGT
*
31389790 CAAAAATACGGTGGAATCAG
66 CAAAAATACGGTGGAATCAC
* * * *
31389810 CACATAGCAACCACC-TCTAGAGTCAGTAA-ATCGGGGAATCAGCACTTAGCAACCCCT
1 CACTTAGCAACCACCTTC-AAATTCAGTAATA-CGGGGAATCAGCACATAGCAACCCCT
31389867 CGGGGAATCA
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
84 19 0.15
85 103 0.83
86 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (85 bp):
CACTTAGCAACCACCTTCAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCTTTCCAAGT
CAAAAATACGGTGGAATCAC
Found at i:31397286 original size:43 final size:42
Alignment explanation
Indices: 31397228--31397382 Score: 181
Period size: 43 Copynumber: 3.6 Consensus size: 42
31397218 TAAATTCAGT
31397228 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
* ** * * *
31397270 GATACGGTAGAATCAGCAGTTAGCAACAACCTTT-ATATTCAATA
1 GATACGG-GGAATCAGCACATAGCAAC-CCCTTTCACAATCAA-A
31397314 -ATACGGGGAATCAGCACATAGCAACCCCTTTC-CAATTCAAA
1 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAA-TCAAA
*
31397355 AATACGGTGGAATCAGCACATAGCAACC
1 GATACGG-GGAATCAGCACATAGCAACC
31397383 ACCTCTAGAG
Statistics
Matches: 94, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 7 0.07
42 33 0.35
43 48 0.51
44 6 0.06
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (42 bp):
GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
Found at i:31397336 original size:42 final size:40
Alignment explanation
Indices: 31397200--31397423 Score: 180
Period size: 43 Copynumber: 5.3 Consensus size: 40
31397190 CGATGGATTT
* * * *
31397200 AGCACTTAGCAACCACCTTAAATTCAGTGATACGGGGAATC
1 AGCACATAGCAA-CACCTTTAATTCAATAATACGGGGAATC
* * *
31397241 AGCACATAGCAACCCCTTTCACAATCAA-AGATACGGTAGAATC
1 AGCACATAGCAACACCTTT-A-ATTCAATA-ATACGG-GGAATC
**
31397284 AGCAGTTAGCAACAACCTTTATATTCAATAATACGGGGAATC
1 AGCACATAGCAAC-ACCTTTA-ATTCAATAATACGGGGAATC
* *
31397326 AGCACATAGCAACCCCTTTCCAATTCAAAAATACGGTGGAATC
1 AGCACATAGCAACACCTTT--AATTCAATAATACGG-GGAATC
* * * *
31397369 AGCACATAGCAACCACCTCTAGAGTCAGTAATTCGGGGAATC
1 AGCACATAGCAA-CACCTTTA-ATTCAATAATACGGGGAATC
* *
31397411 AACACTTAGCAAC
1 AGCACATAGCAAC
31397424 CCCTCGGGGA
Statistics
Matches: 147, Mismatches: 25, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
40 5 0.03
41 18 0.12
42 56 0.38
43 57 0.39
44 11 0.07
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (40 bp):
AGCACATAGCAACACCTTTAATTCAATAATACGGGGAATC
Found at i:31397354 original size:85 final size:85
Alignment explanation
Indices: 31397200--31397427 Score: 307
Period size: 85 Copynumber: 2.7 Consensus size: 85
31397190 CGATGGATTT
*
31397200 AGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTTCACA
1 AGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCTTTCACA
*
31397264 ATCAAAGATACGGTAGAATC
66 ATCAAAAATACGGTAGAATC
* * * *
31397284 AGCAGTTAGCAACAACCTTTATATTCAATAATACGGGGAATCAGCACATAGCAACCCCTTTC-CA
1 AGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCTTTCACA
*
31397348 ATTCAAAAATACGGTGGAATC
66 A-TCAAAAATACGGTAGAATC
* * * * * * *
31397369 AGCACATAGCAACCACCTCTAGAGTCAGTAATTCGGGGAATCAACACTTAGCAACCCCT
1 AGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCT
31397428 CGGGGAATCT
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 18 0.14
85 107 0.86
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.21
Consensus pattern (85 bp):
AGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCTTTCACA
ATCAAAAATACGGTAGAATC
Found at i:31401683 original size:50 final size:50
Alignment explanation
Indices: 31401594--31401708 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 50
31401584 GATCACATGA
* * * * *
31401594 AAGACCATGTCTGGGACATGGCGTTGGCGTCGAGATGAGAAGTCCCCCGT
1 AAGACCATGTCTGGGACATGGCATGGGCCTCGAGATGAGAACTCCCACGT
* *
31401644 AAGACCATGTTTGGGACATGGCATGGGCACT-GATG-TGAGAACTCCCATGT
1 AAGACCATGTCTGGGACATGGCATGGGC-CTCGA-GATGAGAACTCCCACGT
*
31401694 AAGACCATATCTGGG
1 AAGACCATGTCTGGG
31401709 CTATGACATT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 52 0.96
51 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
AAGACCATGTCTGGGACATGGCATGGGCCTCGAGATGAGAACTCCCACGT
Found at i:31402946 original size:37 final size:37
Alignment explanation
Indices: 31402905--31402981 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
31402895 TAGGAAAAAT
31402905 TAATAGATCTAAATTTCAAGTTTTGTAACTCGAGTTA
1 TAATAGATCTAAATTTCAAGTTTTGTAACTCGAGTTA
31402942 TAATAGATCTAAATTTCAAGTTTTGTAACTCGAGTTA
1 TAATAGATCTAAATTTCAAGTTTTGTAACTCGAGTTA
31402979 TAA
1 TAA
31402982 AATAAAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.40
Consensus pattern (37 bp):
TAATAGATCTAAATTTCAAGTTTTGTAACTCGAGTTA
Found at i:31416223 original size:16 final size:16
Alignment explanation
Indices: 31416190--31416223 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
31416180 GTAAATTCTC
*
31416190 AAAAAGATATGAAAAG
1 AAAAAGATAGGAAAAG
*
31416206 AAAAAGATAGGAACAG
1 AAAAAGATAGGAAAAG
31416222 AA
1 AA
31416224 GAGAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAAGATAGGAAAAG
Found at i:31419651 original size:200 final size:201
Alignment explanation
Indices: 31419301--31419752 Score: 728
Period size: 200 Copynumber: 2.2 Consensus size: 201
31419291 TTGCCATCTA
* * *
31419301 TTTTTTAATAATAGTTTTCCAAGACTTAAATGCGAAAAACACATCACTTTTCTGCTTCAGGAAGA
1 TTTTTCAATAATAGTTTTCCAAGACTTAAATGCGGAAAACACATCAC-TTTCTACTTCAGGAAGA
*
31419366 ATGCCCAAACTTTTCTAGAAAAATCATCAATAAAAGTTAGCATATAATTAGCTCCACCTCTCGAA
65 ACGCCCAAACTTTTCTAGAAAAATCATCAATAAAAGTTAGCATATAATTAGCTCCACCTCTCGAA
*
31419431 AGCACTCTAGATGGCCTCCACAGATCAGAATGAATATACTCCAGCGTTCCCTTCATGTTATGGC-
130 AGCACTCTAGATGGCCTCCACAGATCAGAATGAATATACTCCAACGTTCCCTTCATGTTATGGCT
31419495 TTTTCTG
195 TTTTCTG
*
31419502 TTTTTCAATAATAGTTTTCCAAGACTTAAATGCGGAAAACACATCACTTTCTACTTTAGGAAGAA
1 TTTTTCAATAATAGTTTTCCAAGACTTAAATGCGGAAAACACATCACTTTCTACTTCAGGAAGAA
* *
31419567 CGCCCAAACTTTTCTAGAAAAATCATCAATAAAAGTTAGCATATAATTAGGTTCACCTCTC-AAA
66 CGCCCAAACTTTTCTAGAAAAATCATCAATAAAAGTTAGCATATAATTAGCTCCACCTCTCGAAA
* * *
31419631 GGCACTCTAGATGGCCTCCACAGATCAGAATTAATATACTCCAATGTTCCCTTCCTGTTATGGCT
131 -GCACTCTAGATGGCCTCCACAGATCAGAATGAATATACTCCAACGTTCCCTTCATGTTATGGCT
*
31419696 TTTTTTG
195 TTTTCTG
* * * *
31419703 TTTTTCAATAAGAGTATTCCAAGACTTAAATGTGGAAGACACATCACTTT
1 TTTTTCAATAATAGTTTTCCAAGACTTAAATGCGGAAAACACATCACTTT
31419753 TCAGAATTAA
Statistics
Matches: 233, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
199 3 0.01
200 133 0.57
201 97 0.42
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32
Consensus pattern (201 bp):
TTTTTCAATAATAGTTTTCCAAGACTTAAATGCGGAAAACACATCACTTTCTACTTCAGGAAGAA
CGCCCAAACTTTTCTAGAAAAATCATCAATAAAAGTTAGCATATAATTAGCTCCACCTCTCGAAA
GCACTCTAGATGGCCTCCACAGATCAGAATGAATATACTCCAACGTTCCCTTCATGTTATGGCTT
TTTCTG
Found at i:31422320 original size:33 final size:33
Alignment explanation
Indices: 31422265--31422356 Score: 95
Period size: 28 Copynumber: 2.9 Consensus size: 33
31422255 TAACAATCTA
* * *
31422265 GGCCTGAGCCCTATTCAGTAACAGTATAGTGTG
1 GGCCTTAGCCCAATACAGTAACAGTATAGTGTG
* *
31422298 GGCCTTAGCCTAATACATTAAC-----AGTGTG
1 GGCCTTAGCCCAATACAGTAACAGTATAGTGTG
*
31422326 GGCCTTAGCCCAATACAGTAATAGTATAGTG
1 GGCCTTAGCCCAATACAGTAACAGTATAGTG
31422357 CAATAATACA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
28 25 0.54
33 21 0.46
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (33 bp):
GGCCTTAGCCCAATACAGTAACAGTATAGTGTG
Found at i:31422482 original size:26 final size:26
Alignment explanation
Indices: 31422453--31422533 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
31422443 AACACACCAA
31422453 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
31422479 TATCGCAGCAAAGCTACCACTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* * *
31422505 TATTGCAACAAAGCTGCTAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
31422531 TAT
1 TAT
31422534 ACTTTCTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:31422717 original size:27 final size:27
Alignment explanation
Indices: 31422697--31423217 Score: 436
Period size: 27 Copynumber: 19.4 Consensus size: 27
31422687 GGGTATAACA
31422697 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
31422724 GTCATTTTATCCTATGA-GGTATCTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
31422750 GTCATTTTATCCTAT-AGGGGTATCTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
* *
31422777 ATCATTTTACCCAATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
31422804 GTCA-TTTACCCTATGGGGGTATCTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
31422830 ATCATTTTACCCTATAAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
31422857 GTCATTTTACCCTATGGGGGTATTCCA
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
31422884 GTTATTTTACCTTAT-AGGGGTATTTCA
1 GTCATTTTACCCTATGA-GGGTATTTCG
** *
31422911 GTCATGCTACTCTAT-AGGGGTA-TTCTG
1 GTCATTTTACCCTATGA-GGGTATTTC-G
* * * *
31422938 ATCATTTTATCCTATTAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * * *
31422965 ATTATTTTACTCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *** * *
31422992 GTTATTCTATATTATGGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
*
31423019 GTCATTTTA-CC-ATGTAGGGGTATTTCT
1 GTCATTTTACCCTATG-A-GGGTATTTCG
31423046 GTCATTTTACCCTATG-GGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
31423072 GTCATTTTACCGTATGGGGGTATTTCT
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
31423099 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * * *
31423126 ATCTTTTTATCCTATG-GGCATATTTCG
1 GTCATTTTACCCTATGAGG-GTATTTCG
* *
31423153 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
31423180 GTCATTTTATCCTGT-AGGGATATTT-G
1 GTCATTTTACCCTATGAGGG-TATTTCG
31423206 GATCATTTTACC
1 G-TCATTTTACC
31423218 TATTTTGTGG
Statistics
Matches: 403, Mismatches: 74, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
25 4 0.01
26 79 0.20
27 309 0.77
28 8 0.02
29 3 0.01
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:31423507 original size:20 final size:19
Alignment explanation
Indices: 31423466--31423507 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
31423456 AGCCCAATGA
**
31423466 GCCCACATGGCCCATTTTG
1 GCCCACATGGCCCATTACG
31423485 GCCCACCATGGCCCATTACG
1 GCCCA-CATGGCCCATTACG
31423505 GCC
1 GCC
31423508 AAAGCCCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.17, C:0.43, G:0.21, T:0.19
Consensus pattern (19 bp):
GCCCACATGGCCCATTACG
Found at i:31430556 original size:41 final size:41
Alignment explanation
Indices: 31430499--31430604 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
31430489 AATGAGATAA
* *
31430499 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
31430540 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
31430581 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
31430605 AATTGCCAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:31438371 original size:92 final size:92
Alignment explanation
Indices: 31438211--31438518 Score: 327
Period size: 92 Copynumber: 3.3 Consensus size: 92
31438201 CTGGCGTGTT
* * *
31438211 ATAGCTCTTATGAGCAA--TACGTCATGTTATCAAGGGAGAATATTTAGCCTACAAGCTTTTCAC
1 ATAGCTCTTATGAGCAATCTA-G-CGTGTTATCGAGGGAGAATATTTAGCCTACAAGCTTTACAC
* *
31438274 CATGTGTATC-CGACATGTTATCGGTTGGA
64 TATGTGTATCTAG-CATGTTATCGGTTGGA
* * * **
31438303 ATAGCTCTTATTAGTAATCTAGCGTGTTAT-TAGGAGAGAATATTTAGCCTACGGGCTTTACACT
1 ATAGCTCTTATGAGCAATCTAGCGTGTTATCGAGG-GAGAATATTTAGCCTACAAGCTTTACACT
* *
31438367 ATGTGTATCTATCATGTTATCGTTTGGA
65 ATGTGTATCTAGCATGTTATCGGTTGGA
* * * * * *
31438395 ATAGATGTTATGAGCAATTTGGCATGTTATCGAGGGAGAATATTTAGCCTACAAGCTTTGCACTA
1 ATAGCTCTTATGAGCAATCTAGCGTGTTATCGAGGGAGAATATTTAGCCTACAAGCTTTACACTA
** **
31438460 TGTCAATCTAGCATGTTATTAGTTGGA
66 TGTGTATCTAGCATGTTATCGGTTGGA
* * *
31438487 ATAACTCTTATGAGCAAACTAACGTGTTATCG
1 ATAGCTCTTATGAGCAATCTAGCGTGTTATCG
31438519 GATGGTTACC
Statistics
Matches: 175, Mismatches: 36, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
91 3 0.02
92 166 0.95
93 4 0.02
94 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (92 bp):
ATAGCTCTTATGAGCAATCTAGCGTGTTATCGAGGGAGAATATTTAGCCTACAAGCTTTACACTA
TGTGTATCTAGCATGTTATCGGTTGGA
Found at i:31442184 original size:16 final size:16
Alignment explanation
Indices: 31442152--31442186 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
31442142 GTAGATCGGC
*
31442152 AAATGCCGAAATCCTG
1 AAATGCCGAAAACCTG
*
31442168 AAATGCCGAAAAGCTG
1 AAATGCCGAAAACCTG
31442184 AAA
1 AAA
31442187 GTACAGCTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.14
Consensus pattern (16 bp):
AAATGCCGAAAACCTG
Found at i:31442594 original size:27 final size:27
Alignment explanation
Indices: 31442517--31442631 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
31442507 CAAAAAGGTT
* *
31442517 GTAAAATTACCAAAATACCCCCAAAGG
1 GTAAAATTACCAAAATACCCCCGATGG
* * *
31442544 GTAAAATTATCGAAATACCCTCGATGG
1 GTAAAATTACCAAAATACCCCCGATGG
**
31442571 GTAAAATTACCAAAATACCTTCGATGG
1 GTAAAATTACCAAAATACCCCCGATGG
* * * *
31442598 ATAAAATTATCGAAATACCTCCG-TAGG
1 GTAAAATTACCAAAATACCCCCGAT-GG
31442625 GTAAAAT
1 GTAAAAT
31442632 AACTGTTATA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 73 0.99
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCCGATGG
Found at i:31446764 original size:179 final size:180
Alignment explanation
Indices: 31446456--31446807 Score: 611
Period size: 179 Copynumber: 1.9 Consensus size: 180
31446446 TTTGCATAAA
*
31446456 TTTTAAGGAATCCTTAGTTAAATAGTAGCATAGAAATATGCATAATTTTTTCTAAGTGACAAATC
1 TTTTAAGGAATCCTTAGTTAAACAGTAGCATAGAAATA-GCAT-ATTTTTTCTAAGTGACAAATC
*
31446521 TAAGATCTCGAAAGAGCTTATGATTTAGCTTCCAAGTTCATAAATGGTTGAGTTGCCATAGAATT
64 TAAGATCTCGAAAGAGCTTATGATTTAGATTCCAAGTTCATAAATGGTTGAGTTGCCATAGAATT
*
31446586 TTTCCTAGACATTGTTAAACATGATAAGGAATGAATTGAATTATGAACATTT
129 TTTCCAAGACATTGTTAAACATGATAAGGAATGAATTGAATTATGAACATTT
31446638 TTTTAAGGAATCCTTAGTTAAACAGT-GACATAGAAATCA-CAT-TTTTTTCTAAGTGACAAATC
1 TTTTAAGGAATCCTTAGTTAAACAGTAG-CATAGAAAT-AGCATATTTTTTCTAAGTGACAAATC
*
31446700 TAAGATCTCGAAAGAGCTTATGATTTAGATTCCAAGTTCATAAATGGTTGAGTTGCCGTAGAATT
64 TAAGATCTCGAAAGAGCTTATGATTTAGATTCCAAGTTCATAAATGGTTGAGTTGCCATAGAATT
31446765 TTTCCAAGACATTGTTAAACATGATAAGGAATGAATTGAATTA
129 TTTCCAAGACATTGTTAAACATGATAAGGAATGAATTGAATTA
31446808 AAAGTTGTAG
Statistics
Matches: 164, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
179 125 0.76
181 4 0.02
182 34 0.21
183 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (180 bp):
TTTTAAGGAATCCTTAGTTAAACAGTAGCATAGAAATAGCATATTTTTTCTAAGTGACAAATCTA
AGATCTCGAAAGAGCTTATGATTTAGATTCCAAGTTCATAAATGGTTGAGTTGCCATAGAATTTT
TCCAAGACATTGTTAAACATGATAAGGAATGAATTGAATTATGAACATTT
Found at i:31460931 original size:50 final size:50
Alignment explanation
Indices: 31460870--31461064 Score: 223
Period size: 50 Copynumber: 3.9 Consensus size: 50
31460860 ATGTTCGCTT
* * * *
31460870 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCTCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACATCCGGTA
* * *
31460920 CACGTAGTAGCCTGCACATAATACTACACACGTGATCGA-AACTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATAAC-ATCCGGTA
* * * * *
31460971 CGCATAGTAGCCTGCTCATAGTACTACACATGCGACC-TATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACA-TCCGGTA
* *
31461021 CACATAGTAGCCTGCACATAGTACTTCACACGTGACCATCACAT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACAT
31461065 TCACTTTTAC
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
49 1 0.01
50 77 0.65
51 40 0.34
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACATCCGGTA
Found at i:31460998 original size:101 final size:101
Alignment explanation
Indices: 31460872--31461055 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 101
31460862 GTTCGCTTCA
* * *
31460872 CATAGTAGCCTGCACATAGTACTACACATGTGACC-ATTACCTCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-CTCCGATACACATAGTAGCCTGCA
31460936 CATAATACTACACACGTGATCGAAACTATCCGGTACG
65 CATAATACTACACACGTGATCGAAACTATCCGGTACG
* * *
31460973 CATAGTAGCCTGCTCATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCACTCCGATACACATAGTAGCCTGCAC
* *
31461038 ATAGTACTTCACACGTGA
66 ATAATACTACACACGTGA
31461056 CCATCACATT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 71 0.96
102 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCACTCCGATACACATAGTAGCCTGCAC
ATAATACTACACACGTGATCGAAACTATCCGGTACG
Found at i:31463902 original size:42 final size:42
Alignment explanation
Indices: 31463822--31463903 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
31463812 CGTTTTCTCT
* **
31463822 ATGCCATAGTCCAACTATGGTCTTAAACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTAAACATATGCACATATTG
*
31463864 ATGCCATAGCCCAACTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTAAACA-TATGCACATAT
31463904 CACACCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTAAACATATGCACATATTG
Found at i:31466631 original size:51 final size:51
Alignment explanation
Indices: 31466569--31466752 Score: 203
Period size: 51 Copynumber: 3.6 Consensus size: 51
31466559 CTTCACATAA
* * * *
31466569 TAGCCTACACATAGTACTACACATGTGCCCATTACCATCCGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACGTAG
** * * * *
31466620 TAGCCTGCACATAGTACTACACACGTGATTGA-AACTATCTGGTACACATAG
1 TAGCCTGCACATAGTACTACACACGTGA-CCATTACCATCCGGTACACGTAG
* * *
31466671 TAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGGTACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATTACCA-TCCGGTACACGTAG
*
31466721 TAGCCTGCACATAGTACTCCACACGTGACCAT
1 TAGCCTGCACATAGTACTACACACGTGACCAT
31466753 CACATTCACT
Statistics
Matches: 107, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
49 2 0.02
50 39 0.36
51 65 0.61
52 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (51 bp):
TAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACGTAG
Found at i:31466744 original size:101 final size:101
Alignment explanation
Indices: 31466562--31466748 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 101
31466552 ATGTTCGCTT
* *
31466562 CACATAATAGCCTACACATAGTACTACACATGTGCCCATTACCATCCGATACACGTAGTAGCCTG
1 CACATAATAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTG
31466627 CACATAGTACTACACACGTGATTGAAACTATCTGGTA
65 CACATAGTACTACACACGTGATTGAAACTATCTGGTA
* * * *
31466664 CACATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTG
1 CACATAATAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTG
*
31466728 CACATAGTACTCCACACGTGA
65 CACATAGTACTACACACGTGA
31466749 CCATCACATT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
100 4 0.05
101 40 0.52
102 33 0.43
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (101 bp):
CACATAATAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGC
ACATAGTACTACACACGTGATTGAAACTATCTGGTA
Found at i:31474750 original size:27 final size:27
Alignment explanation
Indices: 31474719--31474896 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
31474709 TAAATTGTAC
31474719 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
31474746 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31474772 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
31474800 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
31474828 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
31474855 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
31474882 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31474897 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:31474887 original size:82 final size:81
Alignment explanation
Indices: 31474716--31474896 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
31474706 GATTAAATTG
* *
31474716 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
31474781 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
31474797 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
31474861 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
31474879 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
31474897 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31482331 original size:12 final size:12
Alignment explanation
Indices: 31482314--31482339 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
31482304 CATTCCGAAG
31482314 TATATATATACA
1 TATATATATACA
31482326 TATATATATACA
1 TATATATATACA
31482338 TA
1 TA
31482340 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:31482850 original size:27 final size:27
Alignment explanation
Indices: 31482819--31482996 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31482809 TAAATTGTAC
31482819 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
31482846 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31482872 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
31482900 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
31482928 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31482955 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
31482982 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31482997 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:31482933 original size:82 final size:81
Alignment explanation
Indices: 31482820--31482975 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31482810 AAATTGTACA
* *
31482820 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
31482884 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
31482901 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
31482966 TGCGAGTTGA
65 TGCGAATTGA
31482976 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:31482987 original size:82 final size:81
Alignment explanation
Indices: 31482816--31482996 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
31482806 GATTAAATTG
* *
31482816 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
31482881 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
31482897 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
31482961 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
31482979 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
31482997 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31483007 original size:27 final size:27
Alignment explanation
Indices: 31482901--31483007 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
31482891 TGACCATGCG
* * * *
31482901 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
31482929 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
31482956 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
31482983 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
31483008 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:31486143 original size:38 final size:37
Alignment explanation
Indices: 31486070--31486148 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
31486060 TATTACGAAA
* *
31486070 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
31486107 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
31486145 TCTT
1 TCTT
31486149 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:31486345 original size:47 final size:47
Alignment explanation
Indices: 31486267--31486654 Score: 623
Period size: 47 Copynumber: 8.2 Consensus size: 47
31486257 CCCTTCGGGA
* * * * * * *
31486267 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
31486314 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31486361 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31486410 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31486457 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31486505 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31486552 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31486599 CTTTTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31486646 CTTATCACA
1 CTTATCACA
31486655 ATTTAGAATT
Statistics
Matches: 317, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 226 0.71
48 45 0.14
49 46 0.15
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31486640 original size:189 final size:189
Alignment explanation
Indices: 31486269--31486654 Score: 621
Period size: 189 Copynumber: 2.0 Consensus size: 189
31486259 CTTCGGGACT
* * * * * *
31486269 TATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACACTT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCCATCACATATATACACTT
31486334 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATC
*
31486399 GGCCATTAGGCCTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
130 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * **
31486459 TATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TA-TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCCATCACATATATACACT
*
31486524 TTCACATTCATCACATTGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATC
65 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATC
* *
31486588 GGCCATTAGGCCTTTTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
130 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
31486648 TATCACA
1 TATCACA
31486655 ATTTAGAATT
Statistics
Matches: 181, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
188 5 0.03
189 87 0.48
190 2 0.01
191 87 0.48
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (189 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCCATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:31490040 original size:40 final size:40
Alignment explanation
Indices: 31489996--31490111 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
31489986 GAATACATGT
* *
31489996 CACCAGCATGATTGCTCTTCGGAACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
31490036 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * **
31490076 CACTAGCACGAATGCTCTTCGAAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
31490112 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:31490522 original size:29 final size:29
Alignment explanation
Indices: 31490483--31490561 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
31490473 CTTAATAATC
*
31490483 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
31490513 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
31490542 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
31490562 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Done.