Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 112 of 228
Found at i:32598400 original size:24 final size:25
Alignment explanation
Indices: 32598342--32598403 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
32598332 CTCAATGAGT
32598342 AAACAAACAAAGAAAAGAATTAAAAA
1 AAACAAA-AAAGAAAAGAATTAAAAA
* * *
32598368 AAACGAAAAAGAAAATAATAAAAAA
1 AAACAAAAAAGAAAAGAATTAAAAA
*
32598393 AGAAAAAAAAA
1 A-AACAAAAAA
32598404 CTCAGATCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 17 0.57
26 13 0.43
ACGTcount: A:0.81, C:0.05, G:0.08, T:0.06
Consensus pattern (25 bp):
AAACAAAAAAGAAAAGAATTAAAAA
Found at i:32599069 original size:21 final size:21
Alignment explanation
Indices: 32599053--32599094 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32599043 TTTTTATTAC
32599053 ATAATTATTAAAATTTATAAA
1 ATAATTATTAAAATTTATAAA
* *
32599074 ATAATTATTAATATTTTTAAA
1 ATAATTATTAAAATTTATAAA
32599095 TTTTTTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATAATTATTAAAATTTATAAA
Found at i:32601236 original size:26 final size:24
Alignment explanation
Indices: 32601194--32601262 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 24
32601184 TTTTTCTGAT
* *
32601194 TTAAAACAAAATAAAATGTTATTAA
1 TTAAAACAAACTAAATTG-TATTAA
32601219 TTAAAAGCAAACTCAAATTGTATTAA
1 TTAAAA-CAAACT-AAATTGTATTAA
* *
32601245 ATATAATCAAACTAAATT
1 TTA-AAACAAACTAAATT
32601263 TAATGAATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
25 11 0.30
26 19 0.51
27 7 0.19
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (24 bp):
TTAAAACAAACTAAATTGTATTAA
Found at i:32605077 original size:18 final size:18
Alignment explanation
Indices: 32605021--32605064 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
32605011 TGGTCTCGGC
*
32605021 GGTTTAGGTGGGGCAGGA
1 GGTTTAGGTGGAGCAGGA
*
32605039 GGTTTAGGTGGACCAGGA
1 GGTTTAGGTGGAGCAGGA
32605057 GGTTTAGG
1 GGTTTAGG
32605065 CGGTGCAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.18, C:0.07, G:0.50, T:0.25
Consensus pattern (18 bp):
GGTTTAGGTGGAGCAGGA
Found at i:32607627 original size:33 final size:33
Alignment explanation
Indices: 32607588--32607661 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
32607578 TTTAATTTAT
32607588 ATTATTAAATATTTATATTTAGTCATATAAAAA
1 ATTATTAAATATTTATATTTAGTCATATAAAAA
* *
32607621 ATTATTAATTATTTATATTTAGTCATATAATAA
1 ATTATTAAATATTTATATTTAGTCATATAAAAA
*
32607654 ACTATTAA
1 ATTATTAA
32607662 TATAATTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (33 bp):
ATTATTAAATATTTATATTTAGTCATATAAAAA
Found at i:32607738 original size:15 final size:13
Alignment explanation
Indices: 32607713--32607752 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
32607703 TTTCAATTTT
*
32607713 ATTTTAATAATAA
1 ATTTAAATAATAA
32607726 ATTTTAAAATAATAA
1 A-TTT-AAATAATAA
32607741 ATTTAAATAATA
1 ATTTAAATAATA
32607753 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 9 0.38
14 6 0.25
15 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTTAAATAATAA
Found at i:32607805 original size:15 final size:15
Alignment explanation
Indices: 32607785--32607841 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
32607775 ATTCAATATT
32607785 AATATTTTAATAATA
1 AATATTTTAATAATA
32607800 AATATTTATTACAGTAATA
1 AATA-TT-TTA-A-TAATA
*
32607819 AATATATTAATAATA
1 AATATTTTAATAATA
*
32607834 AATGTTTT
1 AATATTTT
32607842 GTAGTATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
15 15 0.43
16 3 0.09
17 6 0.17
18 2 0.06
19 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:32608615 original size:15 final size:13
Alignment explanation
Indices: 32608583--32608608 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32608573 TCCAGTAAGT
32608583 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
32608596 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
32608609 AATTTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:32629493 original size:98 final size:91
Alignment explanation
Indices: 32629385--32629759 Score: 429
Period size: 84 Copynumber: 4.2 Consensus size: 91
32629375 AATTAAACCA
* *
32629385 TTTTTT-CACTCAATTGGGTACTTTAACTTTCATAATGTATAAAAAAAACCCTCAAGCTTTTTCA
1 TTTTTTGCACTCAATTGAGTACTTTAACTTTCATAATGTAT-AAAAAAACCCTCAAACTTTTTCA
*
32629449 AAAAAAAACCATTAAGCCTCTTTTCTTTTCTTT
65 AAAAAAAACAATTAAGCC-C---TC--TTCTTT
* *
32629482 TTTTTTTCACTCAATTGAGTACTTTAACTTTCATAATGTATAAAAAATCCCTCAAACTTTTTCAA
1 TTTTTTGCACTCAATTGAGTACTTTAACTTTCATAATGTATAAAAAAACCCTCAAACTTTTTCAA
* *
32629547 AAAAAAA-AATTAAG-CATCAT-TTT
66 AAAAAAACAATTAAGCCCTCTTCTTT
32629570 TTTTTTGCACTCAATTGAGTACTTTAACTTTCATAATG-AT-AAAAAACCCTCAAAC--TTT-AA
1 TTTTTTGCACTCAATTGAGTACTTTAACTTTCATAATGTATAAAAAAACCCTCAAACTTTTTCAA
* *
32629630 AAAAAAATAATTAAGCCC-CTGC-TT
66 AAAAAAACAATTAAGCCCTCTTCTTT
* *
32629654 TTTTTTGCACTCAATTGGGTACTTTAGA-TTTCATAATGTATAAAAAAAAACCTCAAACTTTTTC
1 TTTTTTGCACTCAATTGAGTACTTTA-ACTTTCATAATGTAT-AAAAAAACCCTCAAACTTTTTC
* * *
32629718 -AAAAAAAGCAATTAAG-CCTCTGC-CT
64 AAAAAAAAACAATTAAGCCCTCTTCTTT
*
32629743 TTTTTTGTACTCAATTG
1 TTTTTTGCACTCAATTG
32629760 GCTATTTGAA
Statistics
Matches: 249, Mismatches: 17, Indels: 32
0.84 0.06 0.11
Matches are distributed among these distances:
83 9 0.04
84 48 0.19
85 4 0.02
86 14 0.06
87 16 0.06
88 42 0.17
89 39 0.16
91 2 0.01
95 1 0.00
96 6 0.02
97 35 0.14
98 33 0.13
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (91 bp):
TTTTTTGCACTCAATTGAGTACTTTAACTTTCATAATGTATAAAAAAACCCTCAAACTTTTTCAA
AAAAAAACAATTAAGCCCTCTTCTTT
Found at i:32629787 original size:89 final size:87
Alignment explanation
Indices: 32629569--32629790 Score: 197
Period size: 89 Copynumber: 2.6 Consensus size: 87
32629559 AGCATCATTT
** * *
32629569 TTTTTTTGCACTCAATTGAG-TACTTTA-ACTTTCATAATG-AT--AAAAAACCCTCAAACTTTA
1 TTTTTTTGCACTCAATTG-GCTACTTTAGA-TGCCAAAATGCATAAAAAAAAACCTCAAACTTTA
* *
32629629 AAAAAAAATAATTAAGCCCCTGCT
64 AAAAAAAACAATTAAGCCCCTGCC
* ** * * *
32629653 TTTTTTTGCACTCAATTGGGTACTTTAGATTTCATAATGTATAAAAAAAAACCTCAAACTTTTTC
1 TTTTTTTGCACTCAATTGGCTACTTTAGATGCCAAAATGCATAAAAAAAAACCTCAAAC--TTTA
* *
32629718 AAAAAAAGCAATTAAGCCTCTGCC
64 AAAAAAAACAATTAAGCCCCTGCC
* *
32629742 TTTTTTTGTACTCAATTGGCTA-TTT-GAACTGCCAAAATGCGTAAAAAAA
1 TTTTTTTGCACTCAATTGGCTACTTTAG-A-TGCCAAAATGCATAAAAAAA
32629791 GTCATTTGAC
Statistics
Matches: 116, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
83 1 0.01
84 35 0.30
85 3 0.03
87 15 0.13
88 4 0.03
89 58 0.50
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (87 bp):
TTTTTTTGCACTCAATTGGCTACTTTAGATGCCAAAATGCATAAAAAAAAACCTCAAACTTTAAA
AAAAAACAATTAAGCCCCTGCC
Found at i:32629933 original size:10 final size:9
Alignment explanation
Indices: 32629894--32629946 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
32629884 ACATGTGGCA
*
32629894 AAAAATGAT
1 AAAAATTAT
32629903 AAAAA--AT
1 AAAAATTAT
*
32629910 AAAAATCAAT
1 AAAAAT-TAT
*
32629920 AAAAGTTAT
1 AAAAATTAT
32629929 AAAAATTAT
1 AAAAATTAT
32629938 AAAAATTAT
1 AAAAATTAT
32629947 TAAATTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
7 7 0.18
9 24 0.63
10 7 0.18
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (9 bp):
AAAAATTAT
Found at i:32629939 original size:18 final size:19
Alignment explanation
Indices: 32629908--32630026 Score: 59
Period size: 20 Copynumber: 6.3 Consensus size: 19
32629898 ATGATAAAAA
*
32629908 ATAAAAATCAATAAAAGTT
1 ATAAAAATCAATAAAAATT
*
32629927 ATAAAAAT-TATAAAAATT
1 ATAAAAATCAATAAAAATT
** * *
32629945 ATTAAATTTTAATAAAAA-A
1 A-TAAAAATCAATAAAAATT
* *
32629964 ATAAAACAT-ACTTAAAATTT
1 ATAAAA-ATCA-ATAAAAATT
** *
32629984 ATAAAAAAAAGAAAAAAATT
1 ATAAAAATCA-ATAAAAATT
*
32630004 ATAAAAATC-GTAAAAA-T
1 ATAAAAATCAATAAAAATT
32630021 ATAAAA
1 ATAAAA
32630027 TATATAGTAA
Statistics
Matches: 74, Mismatches: 20, Indels: 14
0.69 0.19 0.13
Matches are distributed among these distances:
17 7 0.09
18 19 0.26
19 21 0.28
20 27 0.36
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (19 bp):
ATAAAAATCAATAAAAATT
Found at i:32629967 original size:28 final size:27
Alignment explanation
Indices: 32629903--32629992 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
32629893 AAAAAATGAT
* * *
32629903 AAAAAATAAAAATCAATAAAAGTTATA
1 AAAAAATAAAAATTATTAAAATTTATA
* *
32629930 AAAATTATAAAAATTATTAAATTTTAATA
1 AAAA-AATAAAAATTATTAAAATTT-ATA
32629959 AAAAAATAAAACA-TACTTAAAATTTATA
1 AAAAAATAAAA-ATTA-TTAAAATTTATA
32629987 AAAAAA
1 AAAAAA
32629993 AGAAAAAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
27 4 0.08
28 32 0.62
29 16 0.31
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (27 bp):
AAAAAATAAAAATTATTAAAATTTATA
Found at i:32630008 original size:29 final size:29
Alignment explanation
Indices: 32629929--32630009 Score: 69
Period size: 30 Copynumber: 2.7 Consensus size: 29
32629919 TAAAAGTTAT
* *
32629929 AAAAATTATAAAAATTATTAAATTTTAATA
1 AAAAAATA-AAAAATTATAAAATTTTAATA
*
32629959 AAAAAATAAAACA-TACTTAAAATTTATAA-A
1 AAAAAATAAAAAATTA--TAAAATTT-TAATA
32629989 AAAAAGA-AAAAAATTATAAAA
1 AAAAA-ATAAAAAATTATAAAA
32630010 ATCGTAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
28 2 0.05
29 9 0.21
30 25 0.60
31 6 0.14
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.28
Consensus pattern (29 bp):
AAAAAATAAAAAATTATAAAATTTTAATA
Found at i:32630320 original size:9 final size:9
Alignment explanation
Indices: 32630308--32630469 Score: 73
Period size: 9 Copynumber: 17.4 Consensus size: 9
32630298 TTTTTATGCA
32630308 TTTTATAATTT
1 TTTTATAA--T
*
32630319 TTTTATGAT
1 TTTTATAAT
32630328 TTTTATAAT
1 TTTTATAAT
* *
32630337 ATTCTACAAT
1 -TTTTATAAT
*
32630347 TTCT-T--T
1 TTTTATAAT
32630353 TTTTATATAT
1 TTTTATA-AT
*
32630363 TTTTATGAT
1 TTTTATAAT
*
32630372 TTTTATACT
1 TTTTATAAT
*
32630381 TTTTCTAAT
1 TTTTATAAT
*
32630390 TTTAATAAAT
1 TTTTAT-AAT
* *
32630400 TTTAAATATT
1 TTT-TATAAT
*
32630410 TTTTATTAAAA
1 TTTTA-T-AAT
*
32630421 TTTAATAATT
1 TTTTATAA-T
*
32630431 TTTTATAAA
1 TTTTATAAT
*
32630440 TTTTATTGAT
1 TTTTA-TAAT
32630450 TTTTAT--T
1 TTTTATAAT
32630457 TTTTATAAT
1 TTTTATAAT
32630466 TTTT
1 TTTT
32630470 TGTCACATGT
Statistics
Matches: 115, Mismatches: 23, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
6 4 0.03
7 8 0.07
9 47 0.41
10 41 0.36
11 15 0.13
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:32630321 original size:20 final size:20
Alignment explanation
Indices: 32630296--32630336 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
32630286 ATTAAATGAC
32630296 TTTTTTTATGCA-TTTTATAA
1 TTTTTTTATG-ATTTTTATAA
32630316 TTTTTTTATGATTTTTATAA
1 TTTTTTTATGATTTTTATAA
32630336 T
1 T
32630337 ATTCTACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTTTATGATTTTTATAA
Found at i:32630419 original size:21 final size:21
Alignment explanation
Indices: 32630389--32630444 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
32630379 CTTTTTCTAA
*
32630389 TTTTAATAAATTTTAAAT-AT
1 TTTTTATAAATTTTAAATAAT
*
32630409 TTTTTATTAAAATTT-AATAAT
1 TTTTTA-TAAATTTTAAATAAT
32630430 TTTTTATAAATTTTA
1 TTTTTATAAATTTTA
32630445 TTGATTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTATAAATTTTAAATAAT
Found at i:32630427 original size:20 final size:22
Alignment explanation
Indices: 32630389--32630444 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
32630379 CTTTTTCTAA
* *
32630389 TTTTAATAAATTTTAAAT-ATT
1 TTTTATTAAAATTTAAATAATT
32630410 TTTTATTAAAATTT-AATAATT
1 TTTTATTAAAATTTAAATAATT
*
32630431 TTTTA-TAAATTTTA
1 TTTTATTAAAATTTA
32630445 TTGATTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 10 0.33
21 20 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTATTAAAATTTAAATAATT
Found at i:32632449 original size:17 final size:17
Alignment explanation
Indices: 32632429--32632461 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32632419 AAAATAAGAA
*
32632429 AAAAAAAGTGTTTTAGG
1 AAAAAAAGTATTTTAGG
32632446 AAAAAAAGTATTTTAG
1 AAAAAAAGTATTTTAG
32632462 TATGATAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (17 bp):
AAAAAAAGTATTTTAGG
Found at i:32634248 original size:68 final size:66
Alignment explanation
Indices: 32634175--32634472 Score: 202
Period size: 69 Copynumber: 4.3 Consensus size: 66
32634165 CTGCAAACAT
* * *
32634175 ATTTGGACATCCTTATAACATGCGAAACAACCATTAGAACAACATTGCAACATACCAAAAGCAGC
1 ATTTGGACA-CCTTATAACATGCAAAACAACCATTAGAACAACATTACAACAT-CCAAAAGCAAC
*
32634240 CGC
64 CAC
* * * * * * * **
32634243 CTTTGGACAACATTA-AACATACAAAACAATAACATTTGGACAACATTATAACATGTAAAAGCAA
1 ATTTGGAC-ACCTTATAACATGCAAAAC-A-ACCATTAGAACAACATTACAACATCCAAAAGCAA
32634307 CCAC
63 CCAC
* * * ** * *
32634311 ATTTGGACACCATTATAACATGCAAAACAACCACATTTGGACAACATTATAACATGTAAAAACAG
1 ATTTGGACACC-TTATAACATGCAAAACAA-C-CATTAGAACAACATTACAACATCCAAAAGCAA
32634376 CCAC
63 CCAC
* * * * * * * ** *
32634380 ATTTGGATATCATTGTAATATGCAAAACAATCACATTTGGACAACATTATAACATGTAAAAACAA
1 ATTTGGACA-CCTTATAACATGCAAAACAA-C-CATTAGAACAACATTACAACATCCAAAAGCAA
32634445 CCAC
63 CCAC
*
32634449 ATTTGGACACCGTTGTAACATGCA
1 ATTTGGACACC-TTATAACATGCA
32634473 TACCGCCATT
Statistics
Matches: 193, Mismatches: 28, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
67 13 0.07
68 34 0.18
69 145 0.75
70 1 0.01
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.23
Consensus pattern (66 bp):
ATTTGGACACCTTATAACATGCAAAACAACCATTAGAACAACATTACAACATCCAAAAGCAACCA
C
Found at i:32634325 original size:35 final size:34
Alignment explanation
Indices: 32634175--32634472 Score: 287
Period size: 35 Copynumber: 8.7 Consensus size: 34
32634165 CTGCAAACAT
* * *
32634175 ATTTGGACATCCTTATAACATGCGAAACAA-C-C
1 ATTTGGACAACATTATAACATGCAAAACAACCAC
* * ** * * *
32634207 ATTAGAACAACATTGCAACATACCAAAAGCAGCCGC
1 ATTTGGACAACATTATAACAT-GCAAAA-CAACCAC
* * **
32634243 CTTTGGACAACATTA-AACATACAAAACAATAAC
1 ATTTGGACAACATTATAACATGCAAAACAACCAC
*
32634276 ATTTGGACAACATTATAACATGTAAAAGCAACCAC
1 ATTTGGACAACATTATAACATGCAAAA-CAACCAC
*
32634311 ATTTGGACACCATTATAACATGCAAAACAACCAC
1 ATTTGGACAACATTATAACATGCAAAACAACCAC
* *
32634345 ATTTGGACAACATTATAACATGTAAAAACAGCCAC
1 ATTTGGACAACATTATAACATG-CAAAACAACCAC
* * * * *
32634380 ATTTGGATATCATTGTAATATGCAAAACAATCAC
1 ATTTGGACAACATTATAACATGCAAAACAACCAC
*
32634414 ATTTGGACAACATTATAACATGTAAAAACAACCAC
1 ATTTGGACAACATTATAACATG-CAAAACAACCAC
* * *
32634449 ATTTGGACACCGTTGTAACATGCA
1 ATTTGGACAACATTATAACATGCA
32634473 TACCGCCATT
Statistics
Matches: 213, Mismatches: 45, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
32 15 0.07
33 21 0.10
34 72 0.34
35 93 0.44
36 12 0.06
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.23
Consensus pattern (34 bp):
ATTTGGACAACATTATAACATGCAAAACAACCAC
Found at i:32634465 original size:69 final size:69
Alignment explanation
Indices: 32634244--32634472 Score: 343
Period size: 69 Copynumber: 3.3 Consensus size: 69
32634234 AGCAGCCGCC
* * * * *
32634244 TTTGGACAACATT-AAACATACAAAACAATAACATTTGGACAACATTATAACATGTAAAAGCAAC
1 TTTGGACACCATTGTAACATGCAAAACAATCACATTTGGACAACATTATAACATGTAAAAACAAC
32634308 CACA
66 CACA
* * *
32634312 TTTGGACACCATTATAACATGCAAAACAACCACATTTGGACAACATTATAACATGTAAAAACAGC
1 TTTGGACACCATTGTAACATGCAAAACAATCACATTTGGACAACATTATAACATGTAAAAACAAC
32634377 CACA
66 CACA
* * *
32634381 TTTGGATATCATTGTAATATGCAAAACAATCACATTTGGACAACATTATAACATGTAAAAACAAC
1 TTTGGACACCATTGTAACATGCAAAACAATCACATTTGGACAACATTATAACATGTAAAAACAAC
32634446 CACA
66 CACA
*
32634450 TTTGGACACCGTTGTAACATGCA
1 TTTGGACACCATTGTAACATGCA
32634473 TACCGCCATT
Statistics
Matches: 143, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
68 12 0.08
69 131 0.92
ACGTcount: A:0.45, C:0.20, G:0.11, T:0.24
Consensus pattern (69 bp):
TTTGGACACCATTGTAACATGCAAAACAATCACATTTGGACAACATTATAACATGTAAAAACAAC
CACA
Found at i:32634881 original size:17 final size:17
Alignment explanation
Indices: 32634853--32634885 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32634843 TTCAGAACTG
32634853 CTCCTAGCTTCTATCGTT
1 CTCCTAGCTTCT-TCGTT
32634871 CTCCT-GCTTCTTCGT
1 CTCCTAGCTTCTTCGT
32634886 GCTACAACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 6 0.40
18 5 0.33
ACGTcount: A:0.06, C:0.36, G:0.12, T:0.45
Consensus pattern (17 bp):
CTCCTAGCTTCTTCGTT
Found at i:32635013 original size:15 final size:15
Alignment explanation
Indices: 32634993--32635024 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32634983 CATTTAATAT
*
32634993 TTCCATGTATTTACA
1 TTCCATGCATTTACA
32635008 TTCCATGCATTTACA
1 TTCCATGCATTTACA
32635023 TT
1 TT
32635025 TTTTTTTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (15 bp):
TTCCATGCATTTACA
Found at i:32636235 original size:43 final size:43
Alignment explanation
Indices: 32636138--32636570 Score: 277
Period size: 43 Copynumber: 10.1 Consensus size: 43
32636128 GCATCGTAAC
* *
32636138 GCATCATCGGATAAACCGAAA-TAACTATACT-GCAAACATAGT
1 GCATCATCGGATAAACC-AAAGTAACTATACTGGCACACACAGT
* * *
32636180 ACATCATCGGATATACCAAAGTAAGTATACTGGCACACACAGT
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
* * * *
32636223 GCATCATTGGATAAACCGAAGCAACTATATTGGCACACACAGT
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
* * * * * * *
32636266 GTATCATCGGATATACCGAATTAACCATACTGGCATACACAAT
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
* * * *
32636309 ACATCATCGGATAAACCGAAA-CAACTATACAGGCATACACAGT
1 GCATCATCGGATAAACC-AAAGTAACTATACTGGCACACACAGT
** * *
32636352 GCATCATCAAATATACCGAAGTAACTATACTGGCACACACTA-T
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACAC-AGT
* *** * * *
32636395 GCATCATCAGATAAATTGGAA-CAACTATATTGACACACACAGT
1 GCATCATCGGATAAA-CCAAAGTAACTATACTGGCACACACAGT
* * * ** * * *
32636438 GCTTTATC--AAAAACTGAAGAAACTATACTAGCACATACAGT
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
*** * * * *
32636479 GCATCATCGGATAAATTGAGGCAACTATACTGTCACACACAAT
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
* * * * * * * * * *
32636522 ACATTATCAGATATATCGAAGTAACTATACTAGAACACAAAAT
1 GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
32636565 GCATCA
1 GCATCA
32636571 ACAAATAGAC
Statistics
Matches: 304, Mismatches: 77, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
40 3 0.01
41 30 0.10
42 27 0.09
43 238 0.78
44 6 0.02
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (43 bp):
GCATCATCGGATAAACCAAAGTAACTATACTGGCACACACAGT
Found at i:32636306 original size:86 final size:85
Alignment explanation
Indices: 32636138--32636570 Score: 395
Period size: 86 Copynumber: 5.1 Consensus size: 85
32636128 GCATCGTAAC
* * * * *
32636138 GCATCATCGGATAAACCGAAATAACTATACT-GCAAACATAGTACATCATCGGATATACCAAAGT
1 GCATCATCGGATAAACCGAAACAACTATACTGGCACACACAGTGCATCATCGGATATACCGAAGT
*
32636202 AAGTATACTGGCACACACAGT
66 AACTATACTGGCACACACA-T
* * * * *
32636223 GCATCATTGGATAAACCGAAGCAACTATATTGGCACACACAGTGTATCATCGGATATACCGAATT
1 GCATCATCGGATAAACCGAAACAACTATACTGGCACACACAGTGCATCATCGGATATACCGAAGT
* *
32636288 AACCATACTGGCATACACAAT
66 AACTATACTGGCACACAC-AT
* * * **
32636309 ACATCATCGGATAAACCGAAACAACTATACAGGCATACACAGTGCATCATCAAATATACCGAAGT
1 GCATCATCGGATAAACCGAAACAACTATACTGGCACACACAGTGCATCATCGGATATACCGAAGT
32636374 AACTATACTGGCACACACTAT
66 AACTATACTGGCACACAC-AT
* ** * * * * * * * * *
32636395 GCATCATCAGATAAATTGGAACAACTATATTGACACACACAGTGCTTTATC--AAAAACTGAAGA
1 GCATCATCGGATAAACCGAAACAACTATACTGGCACACACAGTGCATCATCGGATATACCGAAGT
* *
32636458 AACTATACTAGCACATACAGT
66 AACTATACTGGCACACACA-T
** ** * * * * * *
32636479 GCATCATCGGATAAATTGAGGCAACTATACTGTCACACACAATACATTATCAGATATATCGAAGT
1 GCATCATCGGATAAACCGAAACAACTATACTGGCACACACAGTGCATCATCGGATATACCGAAGT
* * *
32636544 AACTATACTAGAACACAAAAT
66 AACTATACTGGCACAC-ACAT
32636565 GCATCA
1 GCATCA
32636571 ACAAATAGAC
Statistics
Matches: 282, Mismatches: 60, Indels: 11
0.80 0.17 0.03
Matches are distributed among these distances:
83 1 0.00
84 67 0.24
85 27 0.10
86 184 0.65
87 3 0.01
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (85 bp):
GCATCATCGGATAAACCGAAACAACTATACTGGCACACACAGTGCATCATCGGATATACCGAAGT
AACTATACTGGCACACACAT
Found at i:32636370 original size:129 final size:128
Alignment explanation
Indices: 32636140--32636409 Score: 328
Period size: 129 Copynumber: 2.1 Consensus size: 128
32636130 ATCGTAACGC
* * * * * *
32636140 ATCATCGGATAAACCGAAATAACTATACTGCAAACATAGTACATCATCGGATATACCAAAGTAAG
1 ATCATCGGATAAACCGAAATAACCATACTGCAAACACAATACATCATCGGATAAACCAAAGCAAC
* *** *
32636205 TATACTGGCACACACAGTGCATCATTGGATAAACCGAAGCAACTATATTGGCACACACAGTGT
66 TATACAGGCACACACAGTGCATCATCAAATAAACCGAAGCAACTATACTGGCACACACAGTGT
* * *
32636268 ATCATCGGATATACCGAATTAACCATACTGGCATACACAATACATCATCGGATAAACCGAAA-CA
1 ATCATCGGATAAACCGAAATAACCATACT-GCAAACACAATACATCATCGGATAAACC-AAAGCA
* * *
32636332 ACTATACAGGCATACACAGTGCATCATCAAATATACCGAAGTAACTATACTGGCACACACTA-TG
64 ACTATACAGGCACACACAGTGCATCATCAAATAAACCGAAGCAACTATACTGGCACACAC-AGTG
*
32636396 C
128 T
*
32636397 ATCATCAGATAAA
1 ATCATCGGATAAA
32636410 TTGGAACAAC
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
128 26 0.22
129 89 0.75
130 4 0.03
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.21
Consensus pattern (128 bp):
ATCATCGGATAAACCGAAATAACCATACTGCAAACACAATACATCATCGGATAAACCAAAGCAAC
TATACAGGCACACACAGTGCATCATCAAATAAACCGAAGCAACTATACTGGCACACACAGTGT
Found at i:32642523 original size:21 final size:21
Alignment explanation
Indices: 32642491--32642531 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32642481 GAACATTTGG
32642491 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
32642512 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
32642532 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:32653553 original size:15 final size:13
Alignment explanation
Indices: 32653520--32653562 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 13
32653510 CACACCAATC
32653520 ACAGATACAAAAT
1 ACAGATACAAAAT
32653533 ACAGATACAGAAAT
1 ACAGATACA-AAAT
32653547 AACAGATACAATAAT
1 -ACAGATACAA-AAT
32653562 A
1 A
32653563 TCATGCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 9 0.33
14 6 0.22
15 12 0.44
ACGTcount: A:0.60, C:0.14, G:0.09, T:0.16
Consensus pattern (13 bp):
ACAGATACAAAAT
Found at i:32657952 original size:23 final size:22
Alignment explanation
Indices: 32657925--32657988 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 22
32657915 ATGCATTTCT
32657925 TAAATAATAAAAAAATTATTTA
1 TAAATAATAAAAAAATTATTTA
* *
32657947 TAAAATCATCAAAAATATTATTTA
1 T-AAATAAT-AAAAAAATTATTTA
32657971 TAAATAAATAAAACAAAT
1 TAAAT-AATAAAA-AAAT
32657989 GGATAAGTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 1 0.03
23 14 0.41
24 19 0.56
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAATAATAAAAAAATTATTTA
Found at i:32662485 original size:23 final size:23
Alignment explanation
Indices: 32662459--32662502 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
32662449 GTAAAGCATT
*
32662459 TGTGGCGTATTATGTGATGCCTA
1 TGTGGCGTATTATGTAATGCCTA
*
32662482 TGTGGCGTATTCTGTAATGCC
1 TGTGGCGTATTATGTAATGCC
32662503 CTTGTGGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.39
Consensus pattern (23 bp):
TGTGGCGTATTATGTAATGCCTA
Found at i:32662508 original size:23 final size:22
Alignment explanation
Indices: 32662458--32662509 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
32662448 TGTAAAGCAT
*
32662458 TTGTGGCGTATTATGTGATGCC
1 TTGTGGCGTATTATGTAATGCC
*
32662480 TATGTGGCGTATTCTGTAATGCCC
1 T-TGTGGCGTATTATGTAATG-CC
32662504 TTGTGG
1 TTGTGG
32662510 TGAAATTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.04
23 22 0.85
24 3 0.12
ACGTcount: A:0.13, C:0.15, G:0.31, T:0.40
Consensus pattern (22 bp):
TTGTGGCGTATTATGTAATGCC
Found at i:32668291 original size:25 final size:27
Alignment explanation
Indices: 32668263--32668315 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
32668253 TTTGACTTCT
*
32668263 TTAAGCATTCTT-TTACT-TTAACATA
1 TTAAGCATTCTTCTCACTGTTAACATA
**
32668288 TTAAGTTTTCTTCTCACTGTTAACATA
1 TTAAGCATTCTTCTCACTGTTAACATA
32668315 T
1 T
32668316 CCAGCCCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 10 0.43
26 4 0.17
27 9 0.39
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.49
Consensus pattern (27 bp):
TTAAGCATTCTTCTCACTGTTAACATA
Found at i:32675336 original size:17 final size:17
Alignment explanation
Indices: 32675302--32675341 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
32675292 TATTTTTATA
32675302 AAATTAAAAATATAATT
1 AAATTAAAAATATAATT
* * *
32675319 ATATTAAAAATGTTATT
1 AAATTAAAAATATAATT
32675336 AAATTA
1 AAATTA
32675342 TATATTATTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
AAATTAAAAATATAATT
Found at i:32675611 original size:21 final size:21
Alignment explanation
Indices: 32675587--32675631 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32675577 TTACAGCTAT
*
32675587 ATTACATTACAACTCTATTCC
1 ATTACAATACAACTCTATTCC
* * *
32675608 ATTACAATCCTATTCTATTCC
1 ATTACAATACAACTCTATTCC
32675629 ATT
1 ATT
32675632 GAACCAAACG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTACAATACAACTCTATTCC
Found at i:32675622 original size:16 final size:16
Alignment explanation
Indices: 32675560--32675614 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
32675550 TGAATTACTG
32675560 ATTACAACGT-TATTCC
1 ATTACAAC-TCTATTCC
* * *
32675576 ATTACAGCTATATTAC
1 ATTACAACTCTATTCC
32675592 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
32675608 ATTACAA
1 ATTACAA
32675615 TCCTATTCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
15 1 0.03
16 32 0.97
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:32680403 original size:27 final size:27
Alignment explanation
Indices: 32680373--32680466 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
32680363 AATGAGAGCC
* *
32680373 TTTGTGGCAAATCATAAAATAAAAGCT
1 TTTGTGGCGAATCATGAAATAAAAGCT
*
32680400 TTTGTGGCGAATCATGAAATGAAAA-CC
1 TTTGTGGCGAATCATGAAAT-AAAAGCT
* * *
32680427 TTTATGGTGAATCATGAAATGAAAGCT
1 TTTGTGGCGAATCATGAAATAAAAGCT
*
32680454 TTTGTGGAGAATC
1 TTTGTGGCGAATC
32680467 TTAAAAAGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.05
27 49 0.88
28 4 0.07
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (27 bp):
TTTGTGGCGAATCATGAAATAAAAGCT
Found at i:32680429 original size:54 final size:54
Alignment explanation
Indices: 32680361--32680466 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
32680351 GTCAGGAAAG
* * * *
32680361 GAAATGAGAGCCTTTGTGGCAAATCATAAAATAAAAGCTTTTGTGGCGAATCAT
1 GAAATGAAAACCTTTATGGCAAATCATAAAATAAAAGCTTTTGTGGAGAATCAT
** * *
32680415 GAAATGAAAACCTTTATGGTGAATCATGAAATGAAAGCTTTTGTGGAGAATC
1 GAAATGAAAACCTTTATGGCAAATCATAAAATAAAAGCTTTTGTGGAGAATC
32680467 TTAAAAAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (54 bp):
GAAATGAAAACCTTTATGGCAAATCATAAAATAAAAGCTTTTGTGGAGAATCAT
Found at i:32683090 original size:39 final size:39
Alignment explanation
Indices: 32683036--32683282 Score: 291
Period size: 39 Copynumber: 6.3 Consensus size: 39
32683026 GCTATTGGGA
* *
32683036 GTACCAAAGCACAACAAGGGCACGTAAGTGCGTTCAGGG
1 GTACCAAAGTACAACAAGGGCACGTAAGTGCATTCAGGG
*
32683075 GTACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGG
1 GTACCAAAGTACAACAAGGGCACGTAAGTGCATTCAGGG
** *
32683114 GTACCAAAGTACAAC-AGGAGCACACAAGTGCATTTAGGG
1 GTACCAAAGTACAACAAGG-GCACGTAAGTGCATTCAGGG
** * * *
32683153 GTACTGAAGTGCAAC-AGAGGCACATAAATGCATTCAGGG
1 GTACCAAAGTACAACAAG-GGCACGTAAGTGCATTCAGGG
* **
32683192 GTACCAAAGTACAACAGGGGCGTGTAAGTGCATTCAGGG
1 GTACCAAAGTACAACAAGGGCACGTAAGTGCATTCAGGG
** *
32683231 GTACTGAAGTACAACAAGGGCAGGTAAGTGCATTCAGGG
1 GTACCAAAGTACAACAAGGGCACGTAAGTGCATTCAGGG
* *
32683270 GTATCGAAGTACA
1 GTACCAAAGTACA
32683283 CCAGTTTTCT
Statistics
Matches: 177, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
38 2 0.01
39 173 0.98
40 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.17
Consensus pattern (39 bp):
GTACCAAAGTACAACAAGGGCACGTAAGTGCATTCAGGG
Found at i:32683092 original size:19 final size:19
Alignment explanation
Indices: 32683070--32683131 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
32683060 TAAGTGCGTT
32683070 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
* ** * *
32683089 CAGGGGCACGTAAGTGCATT
1 CAGGGGTACCAAAGTACA-A
32683109 CAGGGGTACCAAAGTACAA
1 CAGGGGTACCAAAGTACAA
32683128 CAGG
1 CAGG
32683132 AGCACACAAG
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.35, C:0.21, G:0.31, T:0.13
Consensus pattern (19 bp):
CAGGGGTACCAAAGTACAA
Found at i:32683279 original size:117 final size:117
Alignment explanation
Indices: 32683054--32683272 Score: 323
Period size: 117 Copynumber: 1.9 Consensus size: 117
32683044 GCACAACAAG
* * *
32683054 GGCACGTAAGTGCGTTCAGGGGTACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACC
1 GGCACATAAATGCATTCAGGGGTACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACC
*
32683119 AAAGTACAACAGGAGCACACAAGTGCATTTAGGGGTACTGAAGTGCAACAGA
66 AAAGTACAACAGGAGCACACAAGTGCATTCAGGGGTACTGAAGTGCAACAGA
** *
32683171 GGCACATAAATGCATTCAGGGGTACCAAAGTACAACAGGGGCGTGTAAGTGCATTCAGGGGTACT
1 GGCACATAAATGCATTCAGGGGTACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACC
* ***
32683236 GAAGTACAACAAGG-GCAGGTAAGTGCATTCAGGGGTA
66 AAAGTACAAC-AGGAGCACACAAGTGCATTCAGGGGTA
32683273 TCGAAGTACA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
117 87 0.97
118 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.32, T:0.17
Consensus pattern (117 bp):
GGCACATAAATGCATTCAGGGGTACCAAAGTACAACAGGGGCACGTAAGTGCATTCAGGGGTACC
AAAGTACAACAGGAGCACACAAGTGCATTCAGGGGTACTGAAGTGCAACAGA
Found at i:32690392 original size:20 final size:20
Alignment explanation
Indices: 32690369--32690431 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
32690359 CCCTTGTTGT
32690369 ACTTCGGTACCCCTAAATGC
1 ACTTCGGTACCCCTAAATGC
* * * *
32690389 ACTTAC-ATGCCCCT-ATTGT
1 ACTT-CGGTACCCCTAAATGC
32690408 ACTTCGGTACCCCTAAATGC
1 ACTTCGGTACCCCTAAATGC
32690428 ACTT
1 ACTT
32690432 ATGTACGCCT
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 1 0.03
19 13 0.41
20 17 0.53
21 1 0.03
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (20 bp):
ACTTCGGTACCCCTAAATGC
Found at i:32690392 original size:39 final size:39
Alignment explanation
Indices: 32690329--32690567 Score: 289
Period size: 39 Copynumber: 6.1 Consensus size: 39
32690319 AAAACTATTC
* *
32690329 TACTTCGGTACCCCTGAATTCACTTACGTGCCCTTGTTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
* * *
32690368 TACTTCGGTACCCCTAAATGCACTTACATGCCCCTATTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
* * * *
32690407 TACTTCGGTACCCCTAAATGCACTTATGTACGCCTGTTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
* * * * * *
32690446 TCCTTTGGTACCACTGAATGTACTTGCGTGCCCCTATTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
* * * *
32690485 TACTTCAGTACCCCTGAATACACTTAGGTGCCCTTGTTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
* *
32690524 TACTTCAGTACCCCTGAATGCACTTACGTGCCCATGTTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
32690563 TACTT
1 TACTT
32690568 TAGTAATCTT
Statistics
Matches: 167, Mismatches: 33, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 167 1.00
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (39 bp):
TACTTCGGTACCCCTGAATGCACTTACGTGCCCCTGTTG
Found at i:32690420 original size:19 final size:20
Alignment explanation
Indices: 32690365--32690499 Score: 66
Period size: 19 Copynumber: 6.9 Consensus size: 20
32690355 CGTGCCCTTG
32690365 TTGTACTTCGGTACCCCTAA
1 TTGTACTTCGGTACCCCTAA
* * * *
32690385 ATGCACTTAC-ATGCCCCT-A
1 TTGTACTT-CGGTACCCCTAA
32690404 TTGTACTTCGGTACCCCTAA
1 TTGTACTTCGGTACCCCTAA
* * ** * *
32690424 ATGCACTTATGTACGCCT-G
1 TTGTACTTCGGTACCCCTAA
* * *
32690443 TTGTCCTTTGGTACCACTGAA
1 TTGTACTTCGGTACCCCT-AA
*
32690464 -TGTACTT-GCGTGCCCCT-A
1 TTGTACTTCG-GTACCCCTAA
*
32690482 TTGTACTTCAGTACCCCT
1 TTGTACTTCGGTACCCCT
32690500 GAATACACTT
Statistics
Matches: 80, Mismatches: 27, Indels: 17
0.65 0.22 0.14
Matches are distributed among these distances:
18 2 0.03
19 39 0.49
20 38 0.47
21 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.34
Consensus pattern (20 bp):
TTGTACTTCGGTACCCCTAA
Found at i:32691800 original size:26 final size:26
Alignment explanation
Indices: 32691764--32691813 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
32691754 AAAAAAATTT
*
32691764 CCTTTTTCTAAAAATTTTCATATGTG
1 CCTTTTTCTAAAAAATTTCATATGTG
32691790 CCTTTTTCTAAAAAATTTCATATG
1 CCTTTTTCTAAAAAATTTCATATG
32691814 CTTTCGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.06, T:0.48
Consensus pattern (26 bp):
CCTTTTTCTAAAAAATTTCATATGTG
Found at i:32692296 original size:75 final size:75
Alignment explanation
Indices: 32692210--32692357 Score: 235
Period size: 75 Copynumber: 2.0 Consensus size: 75
32692200 AAAGGAAAAC
* * *
32692210 CAAGAGTATTCCCTTATTAATAGAGCAA-ACAAATGGAAATTTAGAAATATGAATTATATTCTTT
1 CAAGAGTATTCCCATATTAATAGAG-AAGACAAATGGAAAGTTAGAAAAATGAATTATATTCTTT
32692274 CCAAAAGAATA
65 CCAAAAGAATA
*
32692285 CAAGATTATTCCCATATTAATAGAGAAGACAAATGGAAAGTTAGAAAAATGAATTATATTCTTTC
1 CAAGAGTATTCCCATATTAATAGAGAAGACAAATGGAAAGTTAGAAAAATGAATTATATTCTTTC
*
32692350 GAAAAGAA
66 CAAAAGAA
32692358 CATTAATTTC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
74 2 0.03
75 65 0.97
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.29
Consensus pattern (75 bp):
CAAGAGTATTCCCATATTAATAGAGAAGACAAATGGAAAGTTAGAAAAATGAATTATATTCTTTC
CAAAAGAATA
Found at i:32692536 original size:138 final size:134
Alignment explanation
Indices: 32692336--32692746 Score: 437
Period size: 128 Copynumber: 3.1 Consensus size: 134
32692326 TAGAAAAATG
* * *
32692336 AATTATATTC-TTTCGAAAAGAACATTAATTTC-TGTCTTTTATAATTTGA-CTAAAATTAATTA
1 AATTATATTCTTTTC-AAAAGAATATTAATTTCATGTCTTTTATATTTTGATC-GAAATTAATTA
* * *
32692398 ATATAACTGTTTATATTAACAATTTCGATAGAATATATACAATTAATATTTTGTACGAATCAAAT
64 ATATAACTGTTAATATTAA-AA-TTCGGTA-AATATATACAATTAATATTTTGTAAGAATCAAAT
*
32692463 TTATATACT
126 TCATATACT
* *
32692472 AATTATATTCTTTTCAAAAGAATACTATTTTCTATGTCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTC-ATGTCTTTTATATTTTGATCGAAATTAATTAA
* *
32692537 TATAA---TTGA-A-T-AAATTCGGT-AATATATATAATTAATATTTTGTAAGAATCAAATTCAT
65 TATAACTGTTAATATTAAAATTCGGTAAATATATACAATTAATATTTTGTAAGAATCAAATTCAT
*
32692595 ATATT
130 ATACT
* ** * * *
32692600 AATTACATTCTTTAAAAAAGAATATTAATTTCCATGTCTTTTATATTTTTATTGACATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTT-CATGTCTTTTATATTTTGATCGAAATTAATTAA
* * ***
32692665 TATAACTGTTAATATTAATAAATTCGGTAAAATATATACAAATAATATTTTGTATGAAAGGAATT
65 TATAACTGTTAATATT-A-AAATTCGGT-AAATATATACAATTAATATTTTGTAAGAATCAAATT
*
32692730 CATATATT
127 CATATACT
*
32692738 AATTTTATT
1 AATTATATT
32692747 TATGTTCTCT
Statistics
Matches: 232, Mismatches: 28, Indels: 28
0.81 0.10 0.10
Matches are distributed among these distances:
128 99 0.43
129 1 0.00
130 5 0.02
131 5 0.02
132 2 0.01
133 2 0.01
134 1 0.00
135 3 0.01
136 33 0.14
137 4 0.02
138 76 0.33
139 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.45
Consensus pattern (134 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTCATGTCTTTTATATTTTGATCGAAATTAATTAAT
ATAACTGTTAATATTAAAATTCGGTAAATATATACAATTAATATTTTGTAAGAATCAAATTCATA
TACT
Found at i:32694661 original size:12 final size:12
Alignment explanation
Indices: 32694644--32694682 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
32694634 GACACGGGCG
32694644 TGTCCTAGCCCA
1 TGTCCTAGCCCA
32694656 TGTCCTAGCCCA
1 TGTCCTAGCCCA
32694668 TGTCC-ATGCCCA
1 TGTCCTA-GCCCA
32694680 TGT
1 TGT
32694683 AACAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 1 0.04
12 25 0.96
ACGTcount: A:0.15, C:0.38, G:0.18, T:0.28
Consensus pattern (12 bp):
TGTCCTAGCCCA
Found at i:32701840 original size:183 final size:183
Alignment explanation
Indices: 32701532--32701891 Score: 630
Period size: 183 Copynumber: 2.0 Consensus size: 183
32701522 TGAGCCATTG
*
32701532 GGTTCGTTCGTACGAACTCGGTAAACCACTTATTAATCATCTGGAAGAAGGCTTCCTTAGCCTCT
1 GGTTCGTTCGTACGAACTCGGTAAACCACTCATTAATCATCTGGAAGAAGGCTTCCTTAGCCTCT
* * **
32701597 GCTCCCCGGTCCTCAGATATGGGCTTACTACCACTCGTCGCTGCTCTGTAAACAGAGGCTTATGC
66 CCTCCCCGGTCCTCAAATATGGGCTTACTACCACTCACCGCTGCTCTGTAAACAGAGGCTTATGC
*
32701662 GTTACTTTCAACCTCATCTAAATTGGCTCGGTTGGATGACATTATCTCTATCA
131 GTTACTTTCAACCTCATCTAAATTAGCTCGGTTGGATGACATTATCTCTATCA
*
32701715 GGTTCGTTCGTACGAACTCGGTAAACCACTCATTCATCATCTGGAAGAAGGCTTCCTTAGCCTCT
1 GGTTCGTTCGTACGAACTCGGTAAACCACTCATTAATCATCTGGAAGAAGGCTTCCTTAGCCTCT
* * *
32701780 CCTCCCCGGTCCTCAAATATGGGCTTGCTACCACTCACCGCTGCTTTGTGAACAGAGGCTTATGC
66 CCTCCCCGGTCCTCAAATATGGGCTTACTACCACTCACCGCTGCTCTGTAAACAGAGGCTTATGC
32701845 GTTACTTTCAACCTCATCTAAATTAGCTCGGTTGGATGACATTATCT
131 GTTACTTTCAACCTCATCTAAATTAGCTCGGTTGGATGACATTATCT
32701892 ATATGAAACC
Statistics
Matches: 167, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
183 167 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (183 bp):
GGTTCGTTCGTACGAACTCGGTAAACCACTCATTAATCATCTGGAAGAAGGCTTCCTTAGCCTCT
CCTCCCCGGTCCTCAAATATGGGCTTACTACCACTCACCGCTGCTCTGTAAACAGAGGCTTATGC
GTTACTTTCAACCTCATCTAAATTAGCTCGGTTGGATGACATTATCTCTATCA
Found at i:32713918 original size:17 final size:18
Alignment explanation
Indices: 32713886--32713924 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
32713876 TCTATAACAA
32713886 AAAATACAAGATGTTTTAC
1 AAAATACAAGATGTTTT-C
32713905 AAAATA-AA-ATGTTTTC
1 AAAATACAAGATGTTTTC
32713921 AAAA
1 AAAA
32713925 GGTAAGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 5 0.25
17 7 0.35
18 2 0.10
19 6 0.30
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAATACAAGATGTTTTC
Found at i:32714665 original size:28 final size:28
Alignment explanation
Indices: 32714633--32714788 Score: 163
Period size: 28 Copynumber: 5.6 Consensus size: 28
32714623 TGAAGGACGT
* *
32714633 CTTTGTGGAAATCTCTGTTAAAGGAAAC
1 CTTTGTGGAGATCTCTGTTAAAGGAAGC
* * *
32714661 CTTTGTGGTGATCTCTATTAAAGGAAGT
1 CTTTGTGGAGATCTCTGTTAAAGGAAGC
*
32714689 CTTTGTGGTGATCTCTGTTAAAGGAAGC
1 CTTTGTGGAGATCTCTGTTAAAGGAAGC
* *
32714717 CTTTGTGGAAATCTTTG-TAAAGGAAGC
1 CTTTGTGGAGATCTCTGTTAAAGGAAGC
* * *
32714744 CTTTGT-GATGATCTCTATTAAAAGAAAC
1 CTTTGTGGA-GATCTCTGTTAAAGGAAGC
* **
32714772 ATTTGTGGCTATCTCTG
1 CTTTGTGGAGATCTCTG
32714789 AAAAAGGGAA
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
26 2 0.02
27 21 0.20
28 82 0.77
29 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (28 bp):
CTTTGTGGAGATCTCTGTTAAAGGAAGC
Found at i:32714711 original size:56 final size:55
Alignment explanation
Indices: 32714625--32714787 Score: 186
Period size: 55 Copynumber: 2.9 Consensus size: 55
32714615 ACACTAGATG
* **
32714625 AAGGACGTCTTTGTGGAAATCTCTGTTAAAGGAAACCTTTGTGGTGATCTCTAT-TA
1 AAGGAAGTCTTTGTGGTGATCTCTGTTAAAGGAAACCTTTGTGGT-ATCTCT-TGTA
* *
32714681 AAGGAAGTCTTTGTGGTGATCTCTGTTAAAGGAAGCCTTTGTGGAAATCT-TTGTA
1 AAGGAAGTCTTTGTGGTGATCTCTGTTAAAGGAAACCTTTGTGG-TATCTCTTGTA
* * * * *
32714736 AAGGAAGCCTTTGTGATGATCTCTATTAAAAGAAACATTTGTGGCTATCTCT
1 AAGGAAGTCTTTGTGGTGATCTCTGTTAAAGGAAACCTTTGTGG-TATCTCT
32714788 GAAAAAGGGA
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
54 1 0.01
55 45 0.49
56 45 0.49
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (55 bp):
AAGGAAGTCTTTGTGGTGATCTCTGTTAAAGGAAACCTTTGTGGTATCTCTTGTA
Found at i:32714777 original size:83 final size:84
Alignment explanation
Indices: 32714633--32714788 Score: 228
Period size: 83 Copynumber: 1.9 Consensus size: 84
32714623 TGAAGGACGT
* * *
32714633 CTTTGTGGAAATCTCTGTTAAAGGAAACCTTTGTGGTGATCTCTATTAAAGGAAGTCTTTGTGG-
1 CTTTGTGGAAATCTCTGTTAAAGGAAACCTTTGTGATGATCTCTATTAAAAGAAGACTTTGTGGC
32714697 TGATCTCTGTTAAAGGAAGC
66 T-ATCTCTGTTAAAGGAAGC
* *
32714717 CTTTGTGGAAATCTTTG-TAAAGGAAGCCTTTGTGATGATCTCTATTAAAAGAA-ACATTTGTGG
1 CTTTGTGGAAATCTCTGTTAAAGGAAACCTTTGTGATGATCTCTATTAAAAGAAGAC-TTTGTGG
32714780 CTATCTCTG
65 CTATCTCTG
32714789 AAAAAGGGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
82 1 0.02
83 47 0.72
84 17 0.26
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (84 bp):
CTTTGTGGAAATCTCTGTTAAAGGAAACCTTTGTGATGATCTCTATTAAAAGAAGACTTTGTGGC
TATCTCTGTTAAAGGAAGC
Found at i:32719507 original size:24 final size:24
Alignment explanation
Indices: 32719480--32719525 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
32719470 TTAAAACTAC
32719480 TTCTAAAGAAAACTC-AAGAGAAAA
1 TTCTAAA-AAAACTCAAAGAGAAAA
* *
32719504 TTCTTAAATAACTCAAAGAGAA
1 TTCTAAAAAAACTCAAAGAGAA
32719526 TTTTCACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.54, C:0.13, G:0.11, T:0.22
Consensus pattern (24 bp):
TTCTAAAAAAACTCAAAGAGAAAA
Found at i:32732959 original size:19 final size:19
Alignment explanation
Indices: 32732931--32732967 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
32732921 AAAAATAAAA
*
32732931 AATAAAGATAATAGATAAT
1 AATAAAGATAATAAATAAT
*
32732950 AATAATGATAATAAATAA
1 AATAAAGATAATAAATAA
32732968 CAATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (19 bp):
AATAAAGATAATAAATAAT
Found at i:32738393 original size:26 final size:26
Alignment explanation
Indices: 32738364--32738425 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
32738354 TAAAATACAA
32738364 GTTGAGAGGTAAATGATAATTTTATC
1 GTTGAGAGGTAAATGATAATTTTATC
32738390 GTTGAGAGGTAAATGATAATTTTATC
1 GTTGAGAGGTAAATGATAATTTTATC
*
32738416 ATTGAG-GGTA
1 GTTGAGAGGTA
32738426 TTTTGGTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 4 0.11
26 31 0.89
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (26 bp):
GTTGAGAGGTAAATGATAATTTTATC
Found at i:32748252 original size:21 final size:22
Alignment explanation
Indices: 32748228--32748271 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
32748218 AGAATGAAGC
* *
32748228 TTGATGGATGCTT-CGGGATGA
1 TTGAGGGATGCTTGAGGGATGA
32748249 TTGAGGGATGCTTGAGGGATGA
1 TTGAGGGATGCTTGAGGGATGA
32748271 T
1 T
32748272 GAATGAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.20, C:0.07, G:0.41, T:0.32
Consensus pattern (22 bp):
TTGAGGGATGCTTGAGGGATGA
Found at i:32748256 original size:11 final size:11
Alignment explanation
Indices: 32748242--32748271 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
32748232 TGGATGCTTC
32748242 GGGATGATTGA
1 GGGATGATTGA
*
32748253 GGGATGCTTGA
1 GGGATGATTGA
32748264 GGGATGAT
1 GGGATGAT
32748272 GAATGAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.47, T:0.27
Consensus pattern (11 bp):
GGGATGATTGA
Found at i:32759747 original size:22 final size:22
Alignment explanation
Indices: 32759730--32759772 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32759720 CTATGTTGTG
*
32759730 ACATTAATCATACCATGTTGCA
1 ACATCAATCATACCATGTTGCA
32759752 ACATCAATCATACCATGTTGC
1 ACATCAATCATACCATGTTGC
32759773 GATGTAGCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (22 bp):
ACATCAATCATACCATGTTGCA
Found at i:32760489 original size:22 final size:22
Alignment explanation
Indices: 32760450--32760499 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
32760440 CATGTAAGTG
* *
32760450 AATTTTTAACCCAGTTTTCGTC
1 AATTTTTAACCCAGTTTTCATA
* * *
32760472 AATTTTTAATCTATTTTTCATA
1 AATTTTTAACCCAGTTTTCATA
32760494 AATTTT
1 AATTTT
32760500 ATGTTTTGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.14, G:0.04, T:0.54
Consensus pattern (22 bp):
AATTTTTAACCCAGTTTTCATA
Found at i:32767567 original size:110 final size:109
Alignment explanation
Indices: 32767412--32767867 Score: 603
Period size: 110 Copynumber: 4.2 Consensus size: 109
32767402 CTAACCAGAT
* *
32767412 TGGCAGATCATGATACATGAATGTGTGTAAGACCATATGGTTAAGACCCATGGCATGATATGTCT
1 TGGCAAATCACGATACATGAATGTGTGTAAGACCATATGGTTAAGACCCATGGCATGATATGTCT
* *
32767477 GTATTTATATTCATGGTGTAACATGCGATAGTGTATGAATCGAAA
66 GTATTTATATTCATGGTGTAGC-TTCGATAGTGTATGAATCGAAA
* * *
32767522 TGGCAAATCACGATACATGAATGTGTGTAAG-CTCATGTGGCTAAGACTCATGGCATGATATGTC
1 TGGCAAATCACGATACATGAATGTGTGTAAGAC-CATATGGTTAAGACCCATGGCATGATATGTC
*
32767586 TATATTTATATTCATGGTGTAGTCTTCGATAGTGTATGAATCGAAA
65 TGTATTTATATTCATGGTGTAG-CTTCGATAGTGTATGAATCGAAA
* * * * *
32767632 CGGCAAATCAAGGTACATGAATGTGTGTAAGACCATGTGGTTATA-ACCCATGGCATGATATATC
1 TGGCAAATCACGATACATGAATGTGTGTAAGACCATATGGTTA-AGACCCATGGCATGATATGTC
*
32767696 TGTATTTATATTCATGGTGTAGCCTTCGGTAGTGTATGAATCGAAA
65 TGTATTTATATTCATGGTGTAG-CTTCGATAGTGTATGAATCGAAA
* * * * * * * *
32767742 TGGTATATCACGATACTTGAATATGTGTAAAACCATATAGTTAAGACCCATGGTATGATATGTAT
1 TGGCAAATCACGATACATGAATGTGTGTAAGACCATATGGTTAAGACCCATGGCATGATATGTCT
* *
32767807 GTATTCATATTCATGGTGTAGCTTTCGATAGTGTATAAATC-AAA
66 GTATTTATATTCATGGTGTAGC-TTCGATAGTGTATGAATCGAAA
* *
32767851 TGGCAGATCATGATACA
1 TGGCAAATCACGATACA
32767868 CAAAATTATG
Statistics
Matches: 303, Mismatches: 37, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
109 19 0.06
110 281 0.93
111 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (109 bp):
TGGCAAATCACGATACATGAATGTGTGTAAGACCATATGGTTAAGACCCATGGCATGATATGTCT
GTATTTATATTCATGGTGTAGCTTCGATAGTGTATGAATCGAAA
Found at i:32772925 original size:50 final size:50
Alignment explanation
Indices: 32772843--32773034 Score: 269
Period size: 50 Copynumber: 3.8 Consensus size: 50
32772833 ATTTGGGTAA
32772843 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATG
*
32772893 AGAGGTCTCATGTAAGACCATGTCT-GGTACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGG-ACATGGCATTGGCACCGAGATG
** * * *
32772943 AGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATG
** * * *
32772993 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA
32773035 GTACAAGAAA
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 2 0.02
50 121 0.97
51 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATG
Found at i:32773068 original size:49 final size:50
Alignment explanation
Indices: 32772848--32773073 Score: 204
Period size: 50 Copynumber: 4.5 Consensus size: 50
32772838 GGTAAAGAGG
* * * * * **
32772848 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
* * * * * * **
32772898 TCTCATGTAAGACCATGTCTGGTACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
** * * *
32772948 TCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
* * * *
32772998 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
*
32773046 ATCCCATGTAAGACTATGTCTGGGACAT
1 -TCCCATGTAAGACCATGTCTGGGACAT
32773074 AGCTTTGGCA
Statistics
Matches: 150, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
48 3 0.02
49 29 0.19
50 118 0.79
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCTACAAGAGAAC
Found at i:32775079 original size:37 final size:37
Alignment explanation
Indices: 32775029--32775107 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32775019 TTATTACGAA
* * *
32775029 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32775066 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32775103 GTCTT
1 GTCTT
32775108 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32775313 original size:47 final size:47
Alignment explanation
Indices: 32775226--32775905 Score: 878
Period size: 47 Copynumber: 14.4 Consensus size: 47
32775216 CCTTTCGGGA
* * * * * * * * *
32775226 CTTATCACATTTTTTCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32775273 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32775320 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32775367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32775413 CTTATTAC--ATATACACTTTCACATTCATCACAT----C----GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32775450 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32775497 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32775544 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32775595 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32775642 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32775689 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
* *
32775740 CTGATCACATATATACATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
32775791 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32775840 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32775887 CTTATCACACATATACACT
1 CTTATCACATATATACACT
32775906 CTCTTGGCTG
Statistics
Matches: 572, Mismatches: 38, Indels: 46
0.87 0.06 0.07
Matches are distributed among these distances:
36 2 0.00
37 7 0.01
39 24 0.04
40 1 0.00
44 25 0.04
46 7 0.01
47 323 0.56
48 1 0.00
49 61 0.11
50 1 0.00
51 112 0.20
53 4 0.01
55 4 0.01
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32775633 original size:98 final size:96
Alignment explanation
Indices: 32775460--32775905 Score: 657
Period size: 98 Copynumber: 4.6 Consensus size: 96
32775450 CTTATCACAC
*
32775460 ATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
*
32775525 ATCACATCGGCTATTAGGCCTTATTACATAT
66 ATCACATCGGCCATTAGGCCTTATTACATAT
32775556 ATACATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACAT
1 AT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACAT
* * * *
32775621 TCATCACGTCGGCTATTAGGCCTTA-T-CACAC
64 TCATCACATCGGCCATTAGGCCTTATTACATAT
* *
32775652 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATACTTTCAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC----ACTTTCAC
* *
32775717 ATTCATCACATCGGCCATTAGGCCTGATCACATAT
62 ATTCATCACATCGGCCATTAGGCCTTATTACATAT
* * *
32775752 ATACATACACTTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCAC
1 AT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT--ATACACTTTCAC
32775817 ATTCATCACATCGGCCATTAGGCCTTATTAC--AT
62 ATTCATCACATCGGCCATTAGGCCTTATTACATAT
32775850 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
32775906 CTCTTGGCTG
Statistics
Matches: 318, Mismatches: 20, Indels: 26
0.87 0.05 0.07
Matches are distributed among these distances:
94 56 0.18
96 51 0.16
97 1 0.00
98 120 0.38
100 42 0.13
102 44 0.14
104 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
ATCACATCGGCCATTAGGCCTTATTACATAT
Found at i:32775678 original size:145 final size:141
Alignment explanation
Indices: 32775447--32775905 Score: 684
Period size: 145 Copynumber: 3.2 Consensus size: 141
32775437 TCATCACATC
* *
32775447 GGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
32775512 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCACATTCA
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTAC--ATAT--ATACACTTTCACATTCA
*
32775577 TCACATCGGCTATTA
127 TCACATCGGCCATTA
* *
32775592 GGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
32775657 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCA
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATAC----ACTTTCACATTCA
32775722 TCACATCGGCCATTA
127 TCACATCGGCCATTA
* * * *
32775737 GGCCTGATCACATATATACATACACTTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATA
1 GGCCTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
32775802 TACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATT
62 T--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATT
*
32775867 CATCACATCGGCTATTA
125 CATCACATCGGCCATTA
32775884 GGCCTTATCACACATATACACT
1 GGCCTTATCACACATATACACT
32775906 CTCTTGGCTG
Statistics
Matches: 293, Mismatches: 11, Indels: 22
0.90 0.03 0.07
Matches are distributed among these distances:
141 4 0.01
143 11 0.04
145 145 0.49
147 40 0.14
149 43 0.15
151 50 0.17
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCAC
ATCGGCCATTA
Found at i:32780660 original size:20 final size:19
Alignment explanation
Indices: 32780597--32780956 Score: 141
Period size: 20 Copynumber: 18.0 Consensus size: 19
32780587 GATGGATAAT
*
32780597 AGGGGCACCAAAGTGCAATC
1 AGGGGCA-CGAAGTGCAATC
*
32780617 AGGAGCACGAATGTGCAATC
1 AGGGGCACGAA-GTGCAATC
32780637 AGGGGCACTGAAGTGCAAAT-
1 AGGGGCAC-GAAGTGC-AATC
* * *
32780657 AGGGTCACAGATGTGCATTC
1 AGGGGCAC-GAAGTGCAATC
* * * *
32780677 AGGCGTACTGAAGTACAAAC
1 AGGGGCAC-GAAGTGCAATC
*
32780697 AAGGGCACGTAAGTGCAATC
1 AGGGGCACG-AAGTGCAATC
* * *
32780717 TA-GGGTATCGAAGTACAAAC
1 -AGGGGCA-CGAAGTGCAATC
* *
32780737 AGGGGCATGTAAGTGCAATT
1 AGGGGCACG-AAGTGCAATC
** * *
32780757 AGGGTTATCGAAGTACAAAC
1 AGGGGCA-CGAAGTGCAATC
32780777 AGGGGCACGTAAGTGCAATC
1 AGGGGCACG-AAGTGCAATC
* * ** *
32780797 TA-GGGTACTAAAGTATAAAC
1 -AGGGGCAC-GAAGTGCAATC
*
32780817 AGGGGCATGTAAGTGCAATC
1 AGGGGCACG-AAGTGCAATC
* * * * *
32780837 AAGGGTATCAAAGTACAAAC
1 AGGGGCA-CGAAGTGCAATC
* *
32780857 AAGGGCATGTAAGTGCAATC
1 AGGGGCACG-AAGTGCAATC
* * * *
32780877 AGGCGTACCGAAGTACAAAC
1 AGGGGCA-CGAAGTGCAATC
32780897 AGGGGCACGTAAGTGCAATC
1 AGGGGCACG-AAGTGCAATC
* * *
32780917 AGGGGTATCGAAGTACAAAC
1 AGGGGCA-CGAAGTGCAATC
* *
32780937 AAGGGCACATAAGTGCAATC
1 AGGGGCAC-GAAGTGCAATC
32780957 TTTCAATAAT
Statistics
Matches: 241, Mismatches: 78, Indels: 42
0.67 0.22 0.12
Matches are distributed among these distances:
19 14 0.06
20 213 0.88
21 14 0.06
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17
Consensus pattern (19 bp):
AGGGGCACGAAGTGCAATC
Found at i:32780713 original size:40 final size:39
Alignment explanation
Indices: 32780669--32780956 Score: 364
Period size: 40 Copynumber: 7.2 Consensus size: 39
32780659 GGTCACAGAT
* *
32780669 GTGCATTCAGGCGTA-CTGAAGTACAAACAAGGGCACGTAA
1 GTGCAATCAGG-GTATC-GAAGTACAAACAGGGGCACGTAA
*
32780709 GTGCAATCTAGGGTATCGAAGTACAAACAGGGGCATGTAA
1 GTGCAATC-AGGGTATCGAAGTACAAACAGGGGCACGTAA
*
32780749 GTGCAATTAGGGTTATCGAAGTACAAACAGGGGCACGTAA
1 GTGCAATCAGGG-TATCGAAGTACAAACAGGGGCACGTAA
* * *
32780789 GTGCAATCTAGGGTA-CTAAAGTATAAACAGGGGCATGTAA
1 GTGCAATC-AGGGTATC-GAAGTACAAACAGGGGCACGTAA
* * *
32780829 GTGCAATCAAGGGTATCAAAGTACAAACAAGGGCATGTAA
1 GTGCAATC-AGGGTATCGAAGTACAAACAGGGGCACGTAA
*
32780869 GTGCAATCAGGCGTACCGAAGTACAAACAGGGGCACGTAA
1 GTGCAATCAGG-GTATCGAAGTACAAACAGGGGCACGTAA
* *
32780909 GTGCAATCAGGGGTATCGAAGTACAAACAAGGGCACATAA
1 GTGCAATCA-GGGTATCGAAGTACAAACAGGGGCACGTAA
32780949 GTGCAATC
1 GTGCAATC
32780957 TTTCAATAAT
Statistics
Matches: 221, Mismatches: 19, Indels: 16
0.86 0.07 0.06
Matches are distributed among these distances:
39 8 0.04
40 202 0.91
41 11 0.05
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18
Consensus pattern (39 bp):
GTGCAATCAGGGTATCGAAGTACAAACAGGGGCACGTAA
Found at i:32780842 original size:120 final size:120
Alignment explanation
Indices: 32780629--32780956 Score: 421
Period size: 120 Copynumber: 2.7 Consensus size: 120
32780619 GAGCACGAAT
* * * * * * * * *
32780629 GTGCAATCAGGGGCACTGAAGTGCAAATAGGGTCACAG-ATGTGCATTCAGGCGTACTGAAGTAC
1 GTGCAATCAGGCGTACCGAAGTACAAACAGGGGCAC-GTAAGTGCAATCAGGGGTACTGAAGTAC
* * *
32780693 AAACAAGGGCACGTAAGTGCAATCTAGGGTATCGAAGTACAAACAGGGGCATGTAA
65 AAACAAGGGCACGTAAGTGCAATCAAGGGTATCAAAGTACAAACAAGGGCATGTAA
* * *
32780749 GTGCAATTAGG-GTTATCGAAGTACAAACAGGGGCACGTAAGTGCAATCTA-GGGTACTAAAGTA
1 GTGCAATCAGGCG-TACCGAAGTACAAACAGGGGCACGTAAGTGCAATC-AGGGGTACTGAAGTA
* * *
32780812 TAAACAGGGGCATGTAAGTGCAATCAAGGGTATCAAAGTACAAACAAGGGCATGTAA
64 CAAACAAGGGCACGTAAGTGCAATCAAGGGTATCAAAGTACAAACAAGGGCATGTAA
32780869 GTGCAATCAGGCGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTA-TCGAAGTAC
1 GTGCAATCAGGCGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACT-GAAGTAC
*
32780933 AAACAAGGGCACATAAGTGCAATC
65 AAACAAGGGCACGTAAGTGCAATC
32780957 TTTCAATAAT
Statistics
Matches: 178, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
119 4 0.02
120 172 0.97
121 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (120 bp):
GTGCAATCAGGCGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACTGAAGTACA
AACAAGGGCACGTAAGTGCAATCAAGGGTATCAAAGTACAAACAAGGGCATGTAA
Found at i:32783964 original size:24 final size:23
Alignment explanation
Indices: 32783937--32783981 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
32783927 GGTTTACAAA
32783937 TTTAAATCATAGAAAAAAAACATT
1 TTTAAATCATA-AAAAAAAACATT
** *
32783961 TTTATTTTATAAAAAAAAACA
1 TTTAAATCATAAAAAAAAACA
32783982 ACAGTTACGC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (23 bp):
TTTAAATCATAAAAAAAAACATT
Found at i:32791291 original size:18 final size:18
Alignment explanation
Indices: 32791270--32791309 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32791260 GATTGAGAGT
* * *
32791270 GAAAAGGAATGTGAAACA
1 GAAAAGAAAAGTGAAAAA
32791288 GAAAAGAAAAGTGAAAAA
1 GAAAAGAAAAGTGAAAAA
32791306 GAAA
1 GAAA
32791310 TTGAAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.03, G:0.25, T:0.07
Consensus pattern (18 bp):
GAAAAGAAAAGTGAAAAA
Found at i:32792919 original size:19 final size:19
Alignment explanation
Indices: 32792895--32792931 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32792885 TGAAGGCAAG
32792895 GCCCAAT-AAGGAAATTCCA
1 GCCCAATCAA-GAAATTCCA
32792914 GCCCAATCAAGAAATTCC
1 GCCCAATCAAGAAATTCC
32792932 TACATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.41, C:0.30, G:0.14, T:0.16
Consensus pattern (19 bp):
GCCCAATCAAGAAATTCCA
Found at i:32801404 original size:20 final size:22
Alignment explanation
Indices: 32801379--32801424 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
32801369 TTAATCGATG
32801379 GTCGTCA-CATCCC-TTTCATA
1 GTCGTCACCATCCCTTTTCATA
32801399 GTCGTCACCATCCCTTTTCATA
1 GTCGTCACCATCCCTTTTCATA
32801421 GTCG
1 GTCG
32801425 ATAGTCGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 11 0.46
ACGTcount: A:0.17, C:0.35, G:0.13, T:0.35
Consensus pattern (22 bp):
GTCGTCACCATCCCTTTTCATA
Found at i:32801440 original size:29 final size:29
Alignment explanation
Indices: 32801396--32801535 Score: 122
Period size: 29 Copynumber: 4.8 Consensus size: 29
32801386 CATCCCTTTC
* * *
32801396 ATAGTCGTCACCATCCCTTTTCATAGTCG
1 ATAGTCATAACCATCCCTTTTCATAATCG
* * *
32801425 ATAGTCGA-AACTATCCCTTATCATAATCA
1 ATAGTC-ATAACCATCCCTTTTCATAATCG
* * * *
32801454 ATGGTCATCACCATCCCTTTTCATAGTTG
1 ATAGTCATAACCATCCCTTTTCATAATCG
* *
32801483 ATGGTCATCACCATCCCTTTTCATAATCG
1 ATAGTCATAACCATCCCTTTTCATAATCG
* *
32801512 ATAGTCA-AAGCTATCACTTTTCAT
1 ATAGTCATAA-CCATCCCTTTTCAT
32801536 TGGTCGATGA
Statistics
Matches: 89, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
28 2 0.02
29 87 0.98
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (29 bp):
ATAGTCATAACCATCCCTTTTCATAATCG
Found at i:32803072 original size:21 final size:21
Alignment explanation
Indices: 32803042--32803082 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
32803032 ATGAGAATCA
32803042 TACAAATACAATGATGAAATT
1 TACAAATACAATGATGAAATT
*
32803063 TACAAGTACAATGATGAAAT
1 TACAAATACAATGATGAAAT
32803083 CACAAATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.12, T:0.27
Consensus pattern (21 bp):
TACAAATACAATGATGAAATT
Found at i:32807652 original size:140 final size:140
Alignment explanation
Indices: 32807400--32807682 Score: 530
Period size: 140 Copynumber: 2.0 Consensus size: 140
32807390 TGATGGGAAG
* *
32807400 TACATTACACGTATTCTTAAAGTAAATTTTGTCTGGTTTTGTAGTTGTTTTTTCTATAAACTTTC
1 TACATTACACATATTCTTAAAGTAAATTTTGTCTGGTTTTGTAGTTGTTTTTGCTATAAACTTTC
32807465 TGTGTAAAAGCAAAATCACAATTTGATTAATTTGAAGAAATGACAGAATTGTAACATCAATTCCT
66 TGTGTAAAAGCAAAATCACAATTTGATTAATTTGAAGAAATGACAGAATTGTAACATCAATTCCT
32807530 ACGAAGACAC
131 ACGAAGACAC
32807540 TACATTACACATATTCTTAAAGTAAATTTTGTCTGGTTTTGTAGTTGTTTTTGCTATAAACTTTC
1 TACATTACACATATTCTTAAAGTAAATTTTGTCTGGTTTTGTAGTTGTTTTTGCTATAAACTTTC
*
32807605 TGTGTAAAAGTAAAATCACAATTTGATTAATTTGAAGAAATGACAGAATTGTAACATCAATTCCT
66 TGTGTAAAAGCAAAATCACAATTTGATTAATTTGAAGAAATGACAGAATTGTAACATCAATTCCT
*
32807670 TCGAAGACAC
131 ACGAAGACAC
32807680 TAC
1 TAC
32807683 TTTGATTTTA
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
140 139 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (140 bp):
TACATTACACATATTCTTAAAGTAAATTTTGTCTGGTTTTGTAGTTGTTTTTGCTATAAACTTTC
TGTGTAAAAGCAAAATCACAATTTGATTAATTTGAAGAAATGACAGAATTGTAACATCAATTCCT
ACGAAGACAC
Found at i:32811093 original size:41 final size:41
Alignment explanation
Indices: 32811036--32811172 Score: 186
Period size: 41 Copynumber: 3.4 Consensus size: 41
32811026 CTTTCGGGAA
* * *
32811036 TTTAGCGGCGTTTTTGGAGAAGTGCCTCTAATGCTCCGGGC
1 TTTAGCGGCGTTTTTGGAGAAGCGCCACTAATGCTCAGGGC
* * *
32811077 TTTAGCGGCGTTTTTGGAGAAACGCCGCTAATGTTCAGGGC
1 TTTAGCGGCGTTTTTGGAGAAGCGCCACTAATGCTCAGGGC
* **
32811118 TTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTCAATGC
1 TTTAGCGGCGTTTTTGGAGAAGCGCCACTAATGCTCAGGGC
32811159 -TTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
32811173 TAAAAAGCGC
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 14 0.16
41 71 0.84
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGGAGAAGCGCCACTAATGCTCAGGGC
Found at i:32811612 original size:14 final size:15
Alignment explanation
Indices: 32811585--32811613 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32811575 AGGTTTATAT
32811585 ATTATGGAATTAGGG
1 ATTATGGAATTAGGG
32811600 ATTATGG-ATTAGGG
1 ATTATGGAATTAGGG
32811614 GTTCTAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (15 bp):
ATTATGGAATTAGGG
Found at i:32811667 original size:14 final size:14
Alignment explanation
Indices: 32811648--32811678 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32811638 AGGGGTTAGG
32811648 GTTAGAGATTAAGA
1 GTTAGAGATTAAGA
*
32811662 GTTAGAGATTTAGA
1 GTTAGAGATTAAGA
32811676 GTT
1 GTT
32811679 TATAGATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (14 bp):
GTTAGAGATTAAGA
Found at i:32811854 original size:21 final size:21
Alignment explanation
Indices: 32811830--32811875 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
32811820 TAAATAAGGT
32811830 TTAGGGG-TCAGTAGTTAGGGG
1 TTAGGGGTTCA-TAGTTAGGGG
* *
32811851 TTAGGGGTTTATGGTTAGGGG
1 TTAGGGGTTCATAGTTAGGGG
32811872 TTAG
1 TTAG
32811876 AGCTTAGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.17, C:0.02, G:0.46, T:0.35
Consensus pattern (21 bp):
TTAGGGGTTCATAGTTAGGGG
Found at i:32813223 original size:16 final size:17
Alignment explanation
Indices: 32813196--32813233 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
32813186 TAGGTTTTTA
32813196 TTTCTATTTGGGGTTCT
1 TTTCTATTTGGGGTTCT
32813213 TTTCT-TTTGGGGTTCT
1 TTTCTATTTGGGGTTCT
32813229 TTTCT
1 TTTCT
32813234 GGGTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.03, C:0.13, G:0.21, T:0.63
Consensus pattern (17 bp):
TTTCTATTTGGGGTTCT
Found at i:32816877 original size:27 final size:27
Alignment explanation
Indices: 32816847--32816902 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
32816837 AATTTCGAGG
*
32816847 TTTACAATTTT-TAATTTTTATTAATTA
1 TTTAC-ATTTTCTAACTTTTATTAATTA
* *
32816874 TTTACGTTTTCTCACTTTTATTAATTA
1 TTTACATTTTCTAACTTTTATTAATTA
32816901 TT
1 TT
32816903 ATTATTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTACATTTTCTAACTTTTATTAATTA
Found at i:32817207 original size:43 final size:42
Alignment explanation
Indices: 32817090--32817314 Score: 190
Period size: 43 Copynumber: 5.3 Consensus size: 42
32817080 GATATGTTTT
* ** * *
32817090 TAGCGGCGTTTTTGCAAGAAGTGTCGCTAAAGGT-TTGTTCTA
1 TAGCGGCGTTTGTGCAA-AAACGCCGCTAAAGGTCATGTTCTA
* * *
32817132 TAGCGGCGTTTGTGATAAAAAGCGCCGTTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTG-CAAAAA-CGCCGCTAAAGGTCATGTTCTA
* *
32817176 TAGCGGCGTTTGTGACAAAAATGCCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTG-CAAAAACGCCGCTAAAGGTCATGTTCTA
* * *
32817219 TAGTGGCGTTTGTGGGAAAAGA-GCCGCTAAAGGGCATGGTT-TA
1 TAGCGGCGTTTGT-GCAAAA-ACGCCGCTAAAGGTCAT-GTTCTA
* * *
32817262 TAGCGGCATTTGTGGAAAAGCGCCGCTAAAGGTCATGACTT-T-
1 TAGCGGCGTTTGTGCAAAAACGCCGCTAAAGGTCATG--TTCTA
32817304 TAGCGGCGTTT
1 TAGCGGCGTTT
32817315 ATTTCTAAAA
Statistics
Matches: 152, Mismatches: 22, Indels: 18
0.79 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 45 0.30
43 76 0.50
44 30 0.20
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.29
Consensus pattern (42 bp):
TAGCGGCGTTTGTGCAAAAACGCCGCTAAAGGTCATGTTCTA
Found at i:32817208 original size:86 final size:84
Alignment explanation
Indices: 32817083--32817298 Score: 245
Period size: 86 Copynumber: 2.5 Consensus size: 84
32817073 TCTGCATGAT
* * * *
32817083 ATGTTTTTAGCGGCGTTTTTGCAAGAAGTGTCGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTGA
1 ATGTTTTTAGCGGCGTTTGTGCAA-AAGTGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTG-
* * * *
32817147 TAAAAAGCGCCGTTAAAGGTC
64 GAAAAAGAGCCGCTAAAGGGC
* *
32817168 ATGTTCTTTAGCGGCGTTTGTGACAAAAATGCCGCTAAAGGTCATGGTCTATAGTGGCGTTTGTG
1 ATGTT-TTTAGCGGCGTTTGTG-CAAAAGTGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTG
*
32817233 GGAAAAGAGCCGCTAAAGGGC
64 GAAAAAGAGCCGCTAAAGGGC
* * * *
32817254 ATGGTTTATAGCGGCATTTGTGGAAAAGCGCCGCTAAAGGTCATG
1 AT-GTTTTTAGCGGCGTTTGTGCAAAAGTGCCGCTAAAGGTCATG
32817299 ACTTTTAGCG
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
85 25 0.23
86 61 0.55
87 25 0.23
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (84 bp):
ATGTTTTTAGCGGCGTTTGTGCAAAAGTGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGA
AAAAGAGCCGCTAAAGGGC
Found at i:32817292 original size:42 final size:43
Alignment explanation
Indices: 32817114--32817314 Score: 205
Period size: 43 Copynumber: 4.7 Consensus size: 43
32817104 CAAGAAGTGT
* *
32817114 CGCTAAAGGT--TTGTTCTATAGCGGCGTTTGTGATAAAAAGCGC
1 CGCTAAAGGTCATGGTT-TATAGCGGCGTTTGTGA-GAAAAGCGC
* * * **
32817157 CGTTAAAGGTCAT-GTTCTTTAGCGGCGTTTGTGACAAAAATGC
1 CGCTAAAGGTCATGGTT-TATAGCGGCGTTTGTGAGAAAAGCGC
* * * *
32817200 CGCTAAAGGTCATGGTCTATAGTGGCGTTTGTGGGAAAAGAGC
1 CGCTAAAGGTCATGGTTTATAGCGGCGTTTGTGAGAAAAGCGC
* *
32817243 CGCTAAAGGGCATGGTTTATAGCGGCATTTGTG-GAAAAGCGC
1 CGCTAAAGGTCATGGTTTATAGCGGCGTTTGTGAGAAAAGCGC
*
32817285 CGCTAAAGGTCATGACTTT-TAGCGGCGTTT
1 CGCTAAAGGTCATG-GTTTATAGCGGCGTTT
32817315 ATTTCTAAAA
Statistics
Matches: 133, Mismatches: 21, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
42 31 0.23
43 79 0.59
44 22 0.17
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (43 bp):
CGCTAAAGGTCATGGTTTATAGCGGCGTTTGTGAGAAAAGCGC
Found at i:32823516 original size:20 final size:19
Alignment explanation
Indices: 32823491--32823571 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 19
32823481 GTTGGAGTCT
32823491 GAATCGAGTTAAACAACAAA
1 GAATCGA-TTAAACAACAAA
* * *
32823511 GAATCGATTCAAAGAATAAT
1 GAATCGATT-AAACAACAAA
*
32823531 GAATCGATTAAATAAGCAAA
1 GAATCGATTAAACAA-CAAA
32823551 GAATCGATTTAAGACAACAAA
1 GAATCGA-TTAA-ACAACAAA
32823572 CAATTTATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
19 7 0.14
20 32 0.64
21 8 0.16
22 3 0.06
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (19 bp):
GAATCGATTAAACAACAAA
Found at i:32825655 original size:16 final size:16
Alignment explanation
Indices: 32825618--32825657 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
32825608 TTAATAAAAT
* *
32825618 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
32825634 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
32825650 TAAAATTA
1 TAAAATTA
32825658 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:32825727 original size:66 final size:67
Alignment explanation
Indices: 32825646--32825788 Score: 261
Period size: 68 Copynumber: 2.1 Consensus size: 67
32825636 AAATTAATTG
32825646 TTAGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
32825710 GA
66 GA
*
32825712 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
32825777 TGA
65 TGA
32825780 TTAGTAAAA
1 TTAGTAAAA
32825789 CAAACATGAT
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 26 0.36
68 47 0.64
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.45
Consensus pattern (67 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
GA
Found at i:32825763 original size:9 final size:9
Alignment explanation
Indices: 32825730--32825757 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32825720 TTTATCAAAT
32825730 TATTAATTG
1 TATTAATTG
32825739 TATTAATTG
1 TATTAATTG
32825748 TATTAATTG
1 TATTAATTG
32825757 T
1 T
32825758 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:32830701 original size:27 final size:26
Alignment explanation
Indices: 32830642--32830704 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
32830632 GGACTTTGTT
* *
32830642 TTAATTATAATAAAAATAATTAATAT
1 TTAATTTTAATAAAAATAATTAATAA
*
32830668 TTTATTTTAATAAAAATAATTGAATAA
1 TTAATTTTAATAAAAATAATT-AATAA
32830695 TTAATTTTAA
1 TTAATTTTAA
32830705 AAATATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 19 0.59
27 13 0.41
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
TTAATTTTAATAAAAATAATTAATAA
Found at i:32832666 original size:20 final size:20
Alignment explanation
Indices: 32832629--32832665 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32832619 CCCAAATTAT
*
32832629 TTTTTTTCTTTTTCTTTTTG
1 TTTTTTTCTTCTTCTTTTTG
32832649 TTTTTTTC-TC-TCTTTTT
1 TTTTTTTCTTCTTCTTTTT
32832666 TATGCTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 7 0.44
19 1 0.06
20 8 0.50
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.84
Consensus pattern (20 bp):
TTTTTTTCTTCTTCTTTTTG
Found at i:32833710 original size:9 final size:10
Alignment explanation
Indices: 32833696--32833738 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
32833686 ATTAATATCC
32833696 AAAT-AAGTA
1 AAATAAAGTA
*
32833705 AAATAAAATA
1 AAATAAAGTA
32833715 AAATAAAGTAA
1 AAATAAAGT-A
32833726 TAAATAAAGTA
1 -AAATAAAGTA
32833737 AA
1 AA
32833739 GAAAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 14 0.48
11 2 0.07
12 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAATAAAGTA
Found at i:32833732 original size:17 final size:17
Alignment explanation
Indices: 32833709--32833765 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
32833699 TAAGTAAAAT
*
32833709 AAAATAAAATAAAGTAA
1 AAAATAAAATAAAGAAA
* *
32833726 TAAATAAAGTAAAGAAA
1 AAAATAAAATAAAGAAA
32833743 AAAATAAAAATAAA-AATA
1 AAAAT-AAAATAAAGAA-A
32833761 AAAAT
1 AAAAT
32833766 TGGGTTGCCT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 20 0.61
18 13 0.39
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAATAAAATAAAGAAA
Found at i:32833750 original size:12 final size:12
Alignment explanation
Indices: 32833704--32833765 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
32833694 CCAAATAAGT
32833704 AAAAT-AAAAT-
1 AAAATAAAAATA
*
32833714 AAAAT-AAAGTA
1 AAAATAAAAATA
*
32833725 ATAAAT-AAAGTA
1 A-AAATAAAAATA
32833737 AAGAA-AAAAATA
1 AA-AATAAAAATA
32833749 AAAATAAAAATA
1 AAAATAAAAATA
32833761 AAAAT
1 AAAAT
32833766 TGGGTTGCCT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
10 9 0.20
11 4 0.09
12 32 0.71
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:32834363 original size:19 final size:19
Alignment explanation
Indices: 32834339--32834377 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32834329 CAATTATGTC
32834339 AATACGATTTACGCTCAAG
1 AATACGATTTACGCTCAAG
*
32834358 AATACGATTTATGCTCAAG
1 AATACGATTTACGCTCAAG
32834377 A
1 A
32834378 TTTCGCTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (19 bp):
AATACGATTTACGCTCAAG
Found at i:32838488 original size:22 final size:20
Alignment explanation
Indices: 32838439--32838479 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 20
32838429 CACAATAGGC
32838439 TTGTCTTGAGACAATTTGCTA
1 TTGTCTTGAGAC-ATTTGCTA
32838460 TATGTCTTGAGACATTTGCT
1 T-TGTCTTGAGACATTTGCT
32838480 CGGTTGTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.44
Consensus pattern (20 bp):
TTGTCTTGAGACATTTGCTA
Found at i:32843417 original size:22 final size:21
Alignment explanation
Indices: 32843384--32843441 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
32843374 GACAATAGGC
*
32843384 TTGTCTCAAGACAATATGCT-A
1 TTGTCTCGAGACAAT-TGCTCA
32843405 TATGTCTCGAGACAATTGCTCGA
1 T-TGTCTCGAGACAATTGCTC-A
*
32843428 TTTTCTCGAGACAA
1 TTGTCTCGAGACAA
32843442 GGCTCCTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 5 0.16
22 25 0.78
23 2 0.06
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (21 bp):
TTGTCTCGAGACAATTGCTCA
Found at i:32844076 original size:68 final size:68
Alignment explanation
Indices: 32843964--32844096 Score: 178
Period size: 68 Copynumber: 2.0 Consensus size: 68
32843954 TTAATAAAAA
* *
32843964 TAATAAATTAAGGAAATTTATTTTAATAAGGACTTGAACATTAATTATAAAATATTTTATTAATA
1 TAATAAATTAAGGAAATTTACTTTAATAAGGACTTGAACATTAATGATAAAATATTTTATTAATA
32844029 TTT
66 TTT
* * ** * *
32844032 TAATAAATTAAGGAATTTTACTTTAATAAGGA-TTCTAATGTTAATGGTAATATATTTTATTAAT
1 TAATAAATTAAGGAAATTTACTTTAATAAGGACTT-GAACATTAATGATAAAATATTTTATTAAT
32844096 A
65 A
32844097 CATCATTTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 2 0.04
68 54 0.96
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (68 bp):
TAATAAATTAAGGAAATTTACTTTAATAAGGACTTGAACATTAATGATAAAATATTTTATTAATA
TTT
Found at i:32848893 original size:386 final size:386
Alignment explanation
Indices: 32848180--32848955 Score: 1552
Period size: 386 Copynumber: 2.0 Consensus size: 386
32848170 GACAAAGTAT
32848180 ACTATAGACAGACATTTCCCTGTTTCTTTTGGAGGTAGAAATACTTACCATTCCTCAAGGGACAC
1 ACTATAGACAGACATTTCCCTGTTTCTTTTGGAGGTAGAAATACTTACCATTCCTCAAGGGACAC
32848245 AACTGATGTGTATAATATAACACACCTATACTTCTGTTTTACCTATCATACACTAGTTGTCTTGG
66 AACTGATGTGTATAATATAACACACCTATACTTCTGTTTTACCTATCATACACTAGTTGTCTTGG
32848310 GAAACAGATGATATTAAGGATATGAAGAATTTGTGATAAGACATAAACTTCCTAATCTGAATGAT
131 GAAACAGATGATATTAAGGATATGAAGAATTTGTGATAAGACATAAACTTCCTAATCTGAATGAT
32848375 ATATAACCTCAAGAATGGGGAAAATACCTTTGTTTACTTTGCTCATCAGATGCCCAATATTTATT
196 ATATAACCTCAAGAATGGGGAAAATACCTTTGTTTACTTTGCTCATCAGATGCCCAATATTTATT
32848440 CCACCATCTGATAAACTCGATCACACTTACAAGTTGCAGAAGGAGAAAAATCCTGAATCATATGA
261 CCACCATCTGATAAACTCGATCACACTTACAAGTTGCAGAAGGAGAAAAATCCTGAATCATATGA
32848505 GCGGAAAACAACATATTTAATCTGATTGGTATATTATTTTGCTGCAAAAAATGAATGATAC
326 GCGGAAAACAACATATTTAATCTGATTGGTATATTATTTTGCTGCAAAAAATGAATGATAC
32848566 ACTATAGACAGACATTTCCCTGTTTCTTTTGGAGGTAGAAATACTTACCATTCCTCAAGGGACAC
1 ACTATAGACAGACATTTCCCTGTTTCTTTTGGAGGTAGAAATACTTACCATTCCTCAAGGGACAC
32848631 AACTGATGTGTATAATATAACACACCTATACTTCTGTTTTACCTATCATACACTAGTTGTCTTGG
66 AACTGATGTGTATAATATAACACACCTATACTTCTGTTTTACCTATCATACACTAGTTGTCTTGG
32848696 GAAACAGATGATATTAAGGATATGAAGAATTTGTGATAAGACATAAACTTCCTAATCTGAATGAT
131 GAAACAGATGATATTAAGGATATGAAGAATTTGTGATAAGACATAAACTTCCTAATCTGAATGAT
32848761 ATATAACCTCAAGAATGGGGAAAATACCTTTGTTTACTTTGCTCATCAGATGCCCAATATTTATT
196 ATATAACCTCAAGAATGGGGAAAATACCTTTGTTTACTTTGCTCATCAGATGCCCAATATTTATT
32848826 CCACCATCTGATAAACTCGATCACACTTACAAGTTGCAGAAGGAGAAAAATCCTGAATCATATGA
261 CCACCATCTGATAAACTCGATCACACTTACAAGTTGCAGAAGGAGAAAAATCCTGAATCATATGA
32848891 GCGGAAAACAACATATTTAATCTGATTGGTATATTATTTTGCTGCAAAAAATGAATGATAC
326 GCGGAAAACAACATATTTAATCTGATTGGTATATTATTTTGCTGCAAAAAATGAATGATAC
32848952 ACTA
1 ACTA
32848956 CATGATATGT
Statistics
Matches: 390, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
386 390 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (386 bp):
ACTATAGACAGACATTTCCCTGTTTCTTTTGGAGGTAGAAATACTTACCATTCCTCAAGGGACAC
AACTGATGTGTATAATATAACACACCTATACTTCTGTTTTACCTATCATACACTAGTTGTCTTGG
GAAACAGATGATATTAAGGATATGAAGAATTTGTGATAAGACATAAACTTCCTAATCTGAATGAT
ATATAACCTCAAGAATGGGGAAAATACCTTTGTTTACTTTGCTCATCAGATGCCCAATATTTATT
CCACCATCTGATAAACTCGATCACACTTACAAGTTGCAGAAGGAGAAAAATCCTGAATCATATGA
GCGGAAAACAACATATTTAATCTGATTGGTATATTATTTTGCTGCAAAAAATGAATGATAC
Found at i:32861304 original size:22 final size:22
Alignment explanation
Indices: 32861278--32861326 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
32861268 CTCGTTAACA
* *
32861278 AATTTATTTATTTTTTATACAC
1 AATTTAGTTAATTTTTATACAC
*
32861300 AATTT-GTTAATTTTTATAGAC
1 AATTTAGTTAATTTTTATACAC
32861321 AATTTA
1 AATTTA
32861327 ATAATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (22 bp):
AATTTAGTTAATTTTTATACAC
Found at i:32861331 original size:21 final size:21
Alignment explanation
Indices: 32861289--32861333 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32861279 ATTTATTTAT
**
32861289 TTTTTATACACAATTTGTTAA
1 TTTTTATACACAATTTAATAA
*
32861310 TTTTTATAGACAATTTAATAA
1 TTTTTATACACAATTTAATAA
32861331 TTT
1 TTT
32861334 ATTCATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTTATACACAATTTAATAA
Found at i:32864375 original size:29 final size:29
Alignment explanation
Indices: 32864315--32864374 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
32864305 ATGTGCGATG
**
32864315 TTATATAAAAATTTTAATTTGGTATAATT
1 TTATATAAAAATTTTAATTTAATATAATT
*
32864344 TTATATATAAAATTTTAATTTAATTTAATT
1 TTATATA-AAAATTTTAATTTAATATAATT
32864374 T
1 T
32864375 AATTTTTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (29 bp):
TTATATAAAAATTTTAATTTAATATAATT
Found at i:32864789 original size:35 final size:32
Alignment explanation
Indices: 32864741--32864821 Score: 101
Period size: 35 Copynumber: 2.4 Consensus size: 32
32864731 AAATCACTGG
32864741 TTTTAGAATATTTTAAAATTTTAA-AATTTAAAATTT
1 TTTTA-AA-ATTTTAAAA-TTTAATAATTT--AATTT
32864777 TTATTAAAATTTTAAAATTTAATAATTTAATTT
1 TT-TTAAAATTTTAAAATTTAATAATTTAATTT
32864810 TTTTAAAATTTT
1 TTTTAAAATTTT
32864822 TTATAGTAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
32 10 0.23
33 7 0.16
34 5 0.12
35 14 0.33
36 4 0.09
37 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (32 bp):
TTTTAAAATTTTAAAATTTAATAATTTAATTT
Found at i:32864821 original size:8 final size:8
Alignment explanation
Indices: 32864750--32864796 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
32864740 GTTTTAGAAT
32864750 ATTTTAAA
1 ATTTTAAA
32864758 ATTTTAAA
1 ATTTTAAA
32864766 A-TTTAAA
1 ATTTTAAA
32864773 ATTTTTATTAAA
1 A---TT-TTAAA
32864785 ATTTTAAA
1 ATTTTAAA
32864793 ATTT
1 ATTT
32864797 AATAATTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
7 7 0.21
8 18 0.53
9 2 0.06
11 1 0.03
12 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
ATTTTAAA
Found at i:32864893 original size:19 final size:17
Alignment explanation
Indices: 32864863--32864897 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 17
32864853 AAGAATTTTT
32864863 AAATAATTTTATTCATTA
1 AAATAATTTTA-TCATTA
32864881 AAATAATTTTTATCATT
1 AAATAA-TTTTATCATT
32864898 TTCTCTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
AAATAATTTTATCATTA
Found at i:32869324 original size:16 final size:16
Alignment explanation
Indices: 32869298--32869344 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
32869288 TAGAATTGGG
32869298 TTGAGAAAATTAATTTA
1 TTGA-AAAATTAATTTA
* *
32869315 TTGAAAAATTACTTAA
1 TTGAAAAATTAATTTA
32869331 TT--AAAATTAATTTA
1 TTGAAAAATTAATTTA
32869345 ATAATAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 10 0.38
16 12 0.46
17 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (16 bp):
TTGAAAAATTAATTTA
Found at i:32878111 original size:24 final size:24
Alignment explanation
Indices: 32878077--32878138 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
32878067 TATTTTCTGA
* * *
32878077 TGCTACTGAGGAGCCCACTCAACC
1 TGCTACCGAGGAGCACACTCAAAC
32878101 TGCTACCGAGGAGCACACTCAAAC
1 TGCTACCGAGGAGCACACTCAAAC
**
32878125 TGCTTTCGAGGAGC
1 TGCTACCGAGGAGC
32878139 TGAAAAAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (24 bp):
TGCTACCGAGGAGCACACTCAAAC
Found at i:32878627 original size:14 final size:14
Alignment explanation
Indices: 32878610--32878636 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32878600 ATGTATGATA
32878610 ATTTTAGTATAGTC
1 ATTTTAGTATAGTC
32878624 ATTTTAGTATAGT
1 ATTTTAGTATAGT
32878637 TAATCAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.52
Consensus pattern (14 bp):
ATTTTAGTATAGTC
Found at i:32895153 original size:122 final size:119
Alignment explanation
Indices: 32894999--32895231 Score: 260
Period size: 122 Copynumber: 1.9 Consensus size: 119
32894989 AAAATAAGGA
* **
32894999 CAAGTGTATGGTGATGATAAAACACATGTGTAATAAAT-ATATGTAAACATTTGTAGTATAATTA
1 CAAGTGTATGGTGATGAAAAAACACAAATGTAAT-AATGATATGTAAACATTTGTA--AT-A-TA
* *
32895063 TTTATTTACTTA-TATTTTAAGCTAA-AGATATTTATTATAATA-ATTATTAAATTGAAGC
61 TTTATTCAATTACT-TTTTAAG-TAAGAGATATTTATTATAATATATTATTAAATTGAAGC
* * * *
32895121 CAAGTGTATGGTGAT-AAAAATATACAAATGTAATAATGGTATTTATACATTTGTAATATATTTA
1 CAAGTGTATGGTGATGAAAAA-ACACAAATGTAATAATGATATGTAAACATTTGTAATATATTTA
*
32895185 TTCAATTACTTTTTAAGTAAGTAGATATTTATTATATTATATTATTA
65 TTCAATTACTTTTTAAGTAAG-AGATATTTATTATAATATATTATTA
32895232 TTATTGTTAA
Statistics
Matches: 95, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
117 3 0.03
118 19 0.20
119 18 0.19
120 9 0.09
121 7 0.07
122 39 0.41
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (119 bp):
CAAGTGTATGGTGATGAAAAAACACAAATGTAATAATGATATGTAAACATTTGTAATATATTTAT
TCAATTACTTTTTAAGTAAGAGATATTTATTATAATATATTATTAAATTGAAGC
Found at i:32895341 original size:12 final size:11
Alignment explanation
Indices: 32895324--32895353 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
32895314 TCGAAACAGG
32895324 AGAAAAGAAAGA
1 AGAAAAGAAA-A
32895336 AGAAAAGAAAA
1 AGAAAAGAAAA
32895347 AGAAAAG
1 AGAAAAG
32895354 GAACAACTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AGAAAAGAAAA
Found at i:32896515 original size:23 final size:23
Alignment explanation
Indices: 32896485--32896595 Score: 124
Period size: 23 Copynumber: 5.0 Consensus size: 23
32896475 AGCTTTGCCG
*
32896485 ATCAGGCACTTAATGTGTCGTAT
1 ATCAGGCACTTCATGTGTCGTAT
*
32896508 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTCATGTGTCGTAT
* *
32896531 ATCAGGCACCTCGTGTGTCGTAT
1 ATCAGGCACTTCATGTGTCGTAT
* *
32896554 -T-AGGCACGTCGTGTGTCGT-T
1 ATCAGGCACTTCATGTGTCGTAT
*
32896574 -TCAGGTACTT-ATGTGTCGTAT
1 ATCAGGCACTTCATGTGTCGTAT
32896595 A
1 A
32896596 CTGATCAGGT
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
20 10 0.13
21 24 0.31
22 1 0.01
23 42 0.55
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (23 bp):
ATCAGGCACTTCATGTGTCGTAT
Found at i:32902502 original size:23 final size:21
Alignment explanation
Indices: 32902476--32902547 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
32902466 GCACTTTATG
32902476 TGTCGTATTTCAAGCACCTCGTA
1 TGTCGTA-TT-AAGCACCTCGTA
* *
32902499 TGTCGTATTAGGCACCTCGTG
1 TGTCGTATTAAGCACCTCGTA
* * **
32902520 TGTCGTTTTAGGCA-CTTATA
1 TGTCGTATTAAGCACCTCGTA
32902540 TGTCGTAT
1 TGTCGTAT
32902548 ACTGGTTAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
20 10 0.24
21 23 0.55
22 2 0.05
23 7 0.17
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (21 bp):
TGTCGTATTAAGCACCTCGTA
Found at i:32902515 original size:21 final size:21
Alignment explanation
Indices: 32902489--32902547 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
32902479 CGTATTTCAA
32902489 GCACCTCGTATGTCGTATTAG
1 GCACCTCGTATGTCGTATTAG
* *
32902510 GCACCTCGTGTGTCGTTTTAG
1 GCACCTCGTATGTCGTATTAG
**
32902531 GCA-CTTATATGTCGTAT
1 GCACCTCGTATGTCGTAT
32902548 ACTGGTTAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 10 0.31
21 22 0.69
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (21 bp):
GCACCTCGTATGTCGTATTAG
Found at i:32906599 original size:28 final size:28
Alignment explanation
Indices: 32906559--32906664 Score: 142
Period size: 28 Copynumber: 3.8 Consensus size: 28
32906549 TTTTGAATTC
32906559 ATAAATGAAGGCTTGTGTGAGCCAACTT
1 ATAAATGAAGGCTTGTGTGAGCCAACTT
*
32906587 ATAAATGAAGGCTTGTGTGAGCTAACTT
1 ATAAATGAAGGCTTGTGTGAGCCAACTT
** * *
32906615 ATAAACAAAGGTTTGTGTAAGCCAA-TT
1 ATAAATGAAGGCTTGTGTGAGCCAACTT
*
32906642 CATAAATGAAAGCTTGTGTGAGC
1 -ATAAATGAAGGCTTGTGTGAGC
32906665 AACCTTGATC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
27 2 0.03
28 64 0.97
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (28 bp):
ATAAATGAAGGCTTGTGTGAGCCAACTT
Found at i:32909971 original size:25 final size:25
Alignment explanation
Indices: 32909943--32909994 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
32909933 AAGTATTATA
*
32909943 CAAAGAACATAAATGTGCTAATAAT
1 CAAAGAACATAAATGTGCAAATAAT
* **
32909968 CAAAGAGCATCGATGTGCAAATAAT
1 CAAAGAACATAAATGTGCAAATAAT
32909993 CA
1 CA
32909995 GAGAGCACGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.21
Consensus pattern (25 bp):
CAAAGAACATAAATGTGCAAATAAT
Found at i:32911028 original size:50 final size:50
Alignment explanation
Indices: 32910904--32911347 Score: 622
Period size: 50 Copynumber: 8.9 Consensus size: 50
32910894 GATAATAACA
* * ** * **
32910904 TGCCAAAGCCATGTCCCAGACATGGTTTTACATGGGATGTTTC--CTGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-TGG
* * ** *
32910953 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
* **
32911003 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
*
32911053 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
* * *
32911103 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
* * * *
32911153 TGCCAACGCTATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
* *
32911203 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
*
32911253 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
*
32911303 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
32911348 AATTTCAATA
Statistics
Matches: 360, Mismatches: 33, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
49 36 0.10
50 323 0.90
51 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
Found at i:32918576 original size:18 final size:18
Alignment explanation
Indices: 32918549--32918586 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32918539 ACACCACATA
32918549 AGGATCTGTAAGTCCATG
1 AGGATCTGTAAGTCCATG
*
32918567 AGGATGTGTAAGTCCATG
1 AGGATCTGTAAGTCCATG
32918585 AG
1 AG
32918587 ACTGAGACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (18 bp):
AGGATCTGTAAGTCCATG
Found at i:32925075 original size:6 final size:6
Alignment explanation
Indices: 32925066--32925096 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
32925056 CTTGTGCTTG
32925066 TTCTTA TTCTTA TTCTTA TTCTTA TTCTTA T
1 TTCTTA TTCTTA TTCTTA TTCTTA TTCTTA T
32925097 ACTTCTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCTTA
Found at i:32935958 original size:127 final size:126
Alignment explanation
Indices: 32935703--32935936 Score: 276
Period size: 129 Copynumber: 1.8 Consensus size: 126
32935693 GTTTTTAATA
* * *
32935703 TTTATTTTTAATAAATAGGATGATAACAACTAATTTATAATTATATTTTATATAATATATATTAA
1 TTTATTTTTAATAAATAAGATAATAACAACTAATATATAATTATATTTTATAT-ATATATATTAA
* * *
32935768 TTGTATTAACCCTATATAGGATTAGAATTGCTTAGTATTTTACCACTATTTTATTTAAGAGTT
65 TTGTATTAACCCTATATAAGATTAGAATT-CATACTATTTTACCACTATTTTATTTAAGAGTT
* *
32935831 TTTATTTTCTAATAAATAAGATAATATCAAGTAATATATTAA-TATATTTTATAT-TATATATTA
1 TTTATTTT-TAATAAATAAGATAATAACAACTAATATA-TAATTATATTTTATATATATATATTA
** ** *
32935894 ATTGTTATTGTCTTTATATAAGATTAGGAGTT-ATACTATTTTA
64 ATTG-TATTAACCCTATATAAGATTA-GAATTCATACTATTTTA
32935937 TTATTATTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
127 22 0.25
128 24 0.27
129 40 0.45
130 3 0.03
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (126 bp):
TTTATTTTTAATAAATAAGATAATAACAACTAATATATAATTATATTTTATATATATATATTAAT
TGTATTAACCCTATATAAGATTAGAATTCATACTATTTTACCACTATTTTATTTAAGAGTT
Done.