Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 113 of 228
Found at i:32945051 original size:27 final size:28
Alignment explanation
Indices: 32945029--32945327 Score: 149
Period size: 27 Copynumber: 11.1 Consensus size: 28
32945019 AGGGGTATAA
32945029 CGGTCATTTTATCCTAT-AAGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* * *
32945056 CGATAATTTTA-CCCATCAAGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* ***
32945083 TGGTCATTTTATCCT-TTGGGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* * *
32945110 CGATAATTTTA-CCCATCAAGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* * **
32945137 CGGTAATTTTA-CCCATCGGGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
** * * *
32945164 CCATAATTTTA-CC-ATCGAGGGTGTTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* * * *
32945190 CGATAATTTTA-CCCATCGAGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* *
32945217 CGGTCATTTTA-CCCATCGAGGGTATTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* **
32945244 -TGTCATTTTA--CTCATTGAGGGTATTT
1 CGGTCATTTTATCCT-ATCAAGGGTATTT
* * * * *
32945270 TGGTAATTTTA-CCCATCGAGGGTGTTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
* * * * *
32945297 CGATAATTTTA-CCCATCGAGGGTGTTT
1 CGGTCATTTTATCCTATCAAGGGTATTT
32945324 CGGT
1 CGGT
32945328 AAAGTTAACG
Statistics
Matches: 226, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.00
26 50 0.22
27 172 0.76
28 3 0.01
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (28 bp):
CGGTCATTTTATCCTATCAAGGGTATTT
Found at i:32945219 original size:80 final size:80
Alignment explanation
Indices: 32945047--32945324 Score: 360
Period size: 80 Copynumber: 3.5 Consensus size: 80
32945037 TTATCCTATA
* ** * *
32945047 AGGGTATTTCGATAATTTTACCCATCAAGGGTATTTTGGTCATTTTATCCTTTGGGGGTATTTCG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCCGTCATTTTA-CCATTGAGGGTATTTCG
*
32945112 ATAATTTTACCCATCA
65 ATAATTTTACCCATCG
* * * * * *
32945128 AGGGTATTTCGGTAATTTTACCCATCGGGGGTATTTCCATAATTTTACCATCGAGGGTGTTTCGA
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCCGTCATTTTACCATTGAGGGTATTTCGA
32945193 TAATTTTACCCATCG
66 TAATTTTACCCATCG
* * * *
32945208 AGGGTATTTCGGTCATTTTACCCATCGAGGGTATTT-TGTCATTTTACTCATTGAGGGTATTTTG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCCGTCATTTTAC-CATTGAGGGTATTTCG
*
32945272 GTAATTTTACCCATCG
65 ATAATTTTACCCATCG
* *
32945288 AGGGTGTTTCGATAATTTTACCCATCGAGGGTGTTTC
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTC
32945325 GGTAAAGTTA
Statistics
Matches: 170, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
79 8 0.05
80 122 0.72
81 40 0.24
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCCGTCATTTTACCATTGAGGGTATTTCGA
TAATTTTACCCATCG
Found at i:32945329 original size:54 final size:54
Alignment explanation
Indices: 32945047--32945325 Score: 337
Period size: 54 Copynumber: 5.2 Consensus size: 54
32945037 TTATCCTATA
* * * * * * *
32945047 AGGGTATTTCGATAATTTTACCCATCAAGGGTATTTTGGTCATTTTATCCTTTG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCG
* * *
32945101 GGGGTATTTCGATAATTTTACCCATCAAGGGTATTTCGGTAATTTTACCCATCG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCG
* * *
32945155 GGGGTATTTCCATAATTTTA-CCATCGAGGGTGTTTCGATAATTTTACCCATCG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCG
* * * * * *
32945208 AGGGTATTTCGGTCATTTTACCCATCGAGGGTATTTTG-TCATTTTACTCATTG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCG
* * *
32945261 AGGGTATTTTGGTAATTTTACCCATCGAGGGTGTTTCGATAATTTTACCCATCG
1 AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCG
*
32945315 AGGGTGTTTCG
1 AGGGTATTTCG
32945326 GTAAAGTTAA
Statistics
Matches: 195, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 92 0.47
54 103 0.53
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCG
Found at i:32956795 original size:15 final size:15
Alignment explanation
Indices: 32956775--32956810 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
32956765 TGTTATAATT
*
32956775 ATGGGAACACTCTTG
1 ATGGGAACACTCCTG
32956790 ATGGGAACACTCCTG
1 ATGGGAACACTCCTG
32956805 ATGGGA
1 ATGGGA
32956811 TCTACCTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (15 bp):
ATGGGAACACTCCTG
Found at i:32960908 original size:27 final size:27
Alignment explanation
Indices: 32960878--32960955 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
32960868 CGAACCGTAG
32960878 TCCACCAAACCAATTGGCGAACCCCAA
1 TCCACCAAACCAATTGGCGAACCCCAA
* * *
32960905 TCCACCAAACTAATTGGCAAACCCCAG
1 TCCACCAAACCAATTGGCGAACCCCAA
* * *
32960932 TCCGCCAAACCTATTGGTGAACCC
1 TCCACCAAACCAATTGGCGAACCC
32960956 AACTTGCAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.33, C:0.38, G:0.13, T:0.15
Consensus pattern (27 bp):
TCCACCAAACCAATTGGCGAACCCCAA
Found at i:32962314 original size:13 final size:13
Alignment explanation
Indices: 32962296--32962361 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
32962286 AGTTCTTCAT
32962296 TACTTTTGAAAAG
1 TACTTTTGAAAAG
*
32962309 TACTTTTGAGAAG
1 TACTTTTGAAAAG
* * *
32962322 TGCTGTGGAAAAG
1 TACTTTTGAAAAG
*
32962335 TACTTTTGAGAAG
1 TACTTTTGAAAAG
*
32962348 TGCTTTTGAAAAG
1 TACTTTTGAAAAG
32962361 T
1 T
32962362 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:32962339 original size:26 final size:26
Alignment explanation
Indices: 32962303--32962361 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
32962293 CATTACTTTT
32962303 GAAAAGTACTTTTGAGAAGTGCTGTG
1 GAAAAGTACTTTTGAGAAGTGCTGTG
* *
32962329 GAAAAGTACTTTTGAGAAGTGCTTTT
1 GAAAAGTACTTTTGAGAAGTGCTGTG
32962355 GAAAAGT
1 GAAAAGT
32962362 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (26 bp):
GAAAAGTACTTTTGAGAAGTGCTGTG
Found at i:32962582 original size:30 final size:29
Alignment explanation
Indices: 32962530--32962590 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
32962520 TTATAACTTG
*
32962530 TTGTTAATATTTTAATATATAAAATATAAA
1 TTGTAAATATTTTAATATAT-AAATATAAA
*
32962560 TTGTAAATATTTTAAT-TAATAAATATTAA
1 TTGTAAATATTTTAATAT-ATAAATATAAA
32962589 TT
1 TT
32962591 ATTTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (29 bp):
TTGTAAATATTTTAATATATAAATATAAA
Found at i:32969783 original size:19 final size:19
Alignment explanation
Indices: 32969759--32969796 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32969749 TTTTTTACTT
32969759 AATTTATGTATTATAAAAA
1 AATTTATGTATTATAAAAA
32969778 AATTTATGTATTATAAAAA
1 AATTTATGTATTATAAAAA
32969797 GGGATATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
AATTTATGTATTATAAAAA
Found at i:32973338 original size:40 final size:40
Alignment explanation
Indices: 32973274--32973359 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
32973264 GTTCTTTTTT
* * * *
32973274 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
1 AATGCACATACATGCCCCTATTTGTACTTCAGTACCCCTA
* *
32973314 AATGTACATACATGCCCCTATTTGTACTTTAGTACCCCTA
1 AATGCACATACATGCCCCTATTTGTACTTCAGTACCCCTA
32973354 AATGCA
1 AATGCA
32973360 TATTTGTGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (40 bp):
AATGCACATACATGCCCCTATTTGTACTTCAGTACCCCTA
Found at i:32987932 original size:27 final size:27
Alignment explanation
Indices: 32987901--32988078 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
32987891 TAAATTGTAC
32987901 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** * *
32987928 TGCACTAAGTGTGCGAAATGAATAT-A
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
32987954 ATGCACTAAGTGTTCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32987982 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
32988010 AGCACTAAGTGTGTGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32988037 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32988064 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32988079 GACTCAATAT
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32989859 original size:20 final size:20
Alignment explanation
Indices: 32989834--32989895 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
32989824 CTTGTACGGC
*
32989834 TTTGCAATTTAGTGCCTCTG
1 TTTGCACTTTAGTGCCTCTG
*
32989854 TTTGCACGTTAGTGCCTCTG
1 TTTGCACTTTAGTGCCTCTG
* *
32989874 TTTTCACTTTGGTGCCTCTG
1 TTTGCACTTTAGTGCCTCTG
32989894 TT
1 TT
32989896 AGCATTTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.47
Consensus pattern (20 bp):
TTTGCACTTTAGTGCCTCTG
Found at i:33003898 original size:14 final size:15
Alignment explanation
Indices: 33003879--33003911 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
33003869 AAAACTCCTA
33003879 AAAATAA-AGAAAAG
1 AAAATAACAGAAAAG
*
33003893 AAAATAACTGAAAAG
1 AAAATAACAGAAAAG
33003908 AAAA
1 AAAA
33003912 ATTTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.76, C:0.03, G:0.12, T:0.09
Consensus pattern (15 bp):
AAAATAACAGAAAAG
Found at i:33016513 original size:11 final size:12
Alignment explanation
Indices: 33016497--33016529 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
33016487 ATTTCACGGA
33016497 AAAATTTCG-TG
1 AAAATTTCGTTG
33016508 AAAATTTCGTTTG
1 AAAATTTCG-TTG
33016521 AAAATTTCG
1 AAAATTTCG
33016530 ATGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
13 11 0.55
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39
Consensus pattern (12 bp):
AAAATTTCGTTG
Found at i:33017695 original size:43 final size:43
Alignment explanation
Indices: 33017590--33017820 Score: 192
Period size: 43 Copynumber: 5.5 Consensus size: 43
33017580 TATTGAATAA
* * * * * *
33017590 AAAGG-GGTTGCTAAGTGCTGATTCCCTGAATTATTG-ACTCT
1 AAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATTGT
** * * *
33017631 AAAGGTGGTTAATAAGTGCTGATCCCACCGTATC-TTTAATTGT
1 AAAGGTGGTTGCTAAGTGCTGATTCC-CCGTATCACTGAATTGT
* *
33017674 GAAAGG-GGTTGCTAAGTGCTGATTCCTCGTATCACTGAA-TAT
1 -AAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATTGT
* * *
33017716 AAAGGTGGTTGCTAAGTGCTGATTCCATCGAATC-CTTAATTGT
1 AAAGGTGGTTGCTAAGTGCTGATTCC-CCGTATCACTGAATTGT
* *
33017759 GAAAGG-GGTTGCTATGTGCTGATTCCCCGTATCATTGAATT-T
1 -AAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATTGT
*
33017801 -ATGGTGGTTGCTAAGTGCTG
1 AAAGGTGGTTGCTAAGTGCTG
33017821 CCACCAAGTA
Statistics
Matches: 153, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
40 3 0.02
41 24 0.16
42 57 0.37
43 59 0.39
44 10 0.07
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
AAAGGTGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATTGT
Found at i:33017726 original size:42 final size:41
Alignment explanation
Indices: 33017581--33017820 Score: 198
Period size: 42 Copynumber: 5.7 Consensus size: 41
33017571 GCCGGAATAT
* * * *
33017581 ATTGAATAAAAAGGGGTTGCTAAGTGCTGATTCCCTGAATT
1 ATTGAATATAAAGGGGTTGCTAAGTGCTGATTCCCCGTATC
* * ** *
33017622 ATTGACTCTAAAGGTGGTTAATAAGTGCTGATCCCACCGTATC
1 ATTGAATATAAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATC
* * *
33017665 -TTTAATTGTGAAAGGGGTTGCTAAGTGCTGATTCCTCGTATC
1 ATTGAA-TAT-AAAGGGGTTGCTAAGTGCTGATTCCCCGTATC
* * *
33017707 ACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCATCGAATC
1 ATTGAATATAAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATC
* * *
33017750 CTT-AATTGTGAAAGGGGTTGCTATGTGCTGATTCCCCGTATC
1 ATTGAA-TAT-AAAGGGGTTGCTAAGTGCTGATTCCCCGTATC
* *
33017792 ATTGAAT-TTATGGTGGTTGCTAAGTGCTG
1 ATTGAATATAAAGG-GGTTGCTAAGTGCTG
33017821 CCACCAAGTA
Statistics
Matches: 158, Mismatches: 30, Indels: 22
0.75 0.14 0.10
Matches are distributed among these distances:
40 3 0.02
41 31 0.20
42 58 0.37
43 56 0.35
44 10 0.06
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (41 bp):
ATTGAATATAAAGGGGTTGCTAAGTGCTGATTCCCCGTATC
Found at i:33017733 original size:85 final size:83
Alignment explanation
Indices: 33017590--33017820 Score: 300
Period size: 85 Copynumber: 2.7 Consensus size: 83
33017580 TATTGAATAA
* * * **
33017590 AAAGGGGTTGCTAAGTGCTGATTCCCTGAATTATTGACTCTAAAGGTGGTTAATAAGTGCTGATC
1 AAAGGGGTTGCTAAGTGCTGATTCCC-GTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATC
* *
33017655 CCACCGTATCTTTAATTGTG
64 CCACCGAATCCTTAATTGTG
* *
33017675 AAAGGGGTTGCTAAGTGCTGATTCCTCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATT
1 AAAGGGGTTGCTAAGTGCTGATTCC-CGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATC
*
33017740 CCATCGAATCCTTAATTGTG
64 CCACCGAATCCTTAATTGTG
* * *
33017760 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTTATGGTGGTTGCTAAGTGCTG
1 AAAGGGGTTGCTAAGTGCTGATT-CCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTG
33017821 CCACCAAGTA
Statistics
Matches: 129, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
84 20 0.16
85 106 0.82
86 3 0.02
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (83 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTGATCCC
ACCGAATCCTTAATTGTG
Found at i:33030828 original size:42 final size:42
Alignment explanation
Indices: 33030771--33031002 Score: 240
Period size: 43 Copynumber: 5.5 Consensus size: 42
33030761 TATTGAATAA
* * * *
33030771 AAAGGGGTTGCTAAGTACTGATTCCCCGAATTATTGACTGT-
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTGTG
* *
33030812 AAAGGTGGTTGCTAAGTGCTGATCTCACCGTATCTTTGATTGTG
1 AAAGG-GGTTGCTAAGTGCTGAT-TCCCCGTATCATTGATTGTG
* * *
33030856 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATAT-
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTGTG
* * * *
33030897 AAAGGTGGTTGCTAAGTGCTGATTCCACTGAATCCTTAATTGTG
1 AAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTGTG
*
33030941 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGAATT-T-
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTG-ATTGTG
*
33030982 -ATGGCGGTTGCTAAGTGCTGA
1 AAAGG-GGTTGCTAAGTGCTGA
33031003 ATCCACCGAG
Statistics
Matches: 158, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
40 3 0.02
41 25 0.16
42 58 0.37
43 62 0.39
44 10 0.06
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTGTG
Found at i:33030877 original size:85 final size:84
Alignment explanation
Indices: 33030771--33031011 Score: 315
Period size: 85 Copynumber: 2.8 Consensus size: 84
33030761 TATTGAATAA
* * * *
33030771 AAAGGGGTTGCTAAGTACTGATTCCCCGAATTATTGACTGTAAAGGTGGTTGCTAAGTGCTGATC
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATC
* * *
33030836 TCACCGTATCTTTGATTGTG
65 TCACCGAATCCTTAATTGTG
*
33030856 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGAT-
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATC
*
33030920 TCCACTGAATCCTTAATTGTG
65 T-CACCGAATCCTTAATTGTG
* * * *
33030941 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTTATGGCGGTTGCTAAGTGCTGAATC
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTG-ATC
33031006 -CACCGA
65 TCACCGA
33031012 GTAACGGATA
Statistics
Matches: 137, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
84 25 0.18
85 112 0.82
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (84 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTGATCT
CACCGAATCCTTAATTGTG
Found at i:33039398 original size:231 final size:231
Alignment explanation
Indices: 33038995--33039472 Score: 884
Period size: 231 Copynumber: 2.1 Consensus size: 231
33038985 GGACTCAATT
33038995 TACCCTTCTTACCATATCTCAAAACTTTTTGCCAAGGCGAAACTTTCAGAAACACCTTATCGCCA
1 TACCCTTCTTACCATATCTCAAAACTTTTTGCCAAGGCGAAACTTTCAGAAACACCTTATCGCCA
33039060 ACTTGAAACTTGATATCTTAACATTTCAAATATGCATAAGATTTCTACTTATCAAATGCTACTTT
66 ACTTGAAACTTGATATCTTAACATTTCAAATATGCATAAGATTTCTACTTATCAAATGCTACTTT
*
33039125 CAATCGTTCACAAATCAAATTTACTTCCTCGTTAGTCTCTCAAACCAAATTCAGTCCAACAACTA
131 CAATCGTTCACAAATCAAATTTACTTCCTCGTTAATCTCTCAAACCAAATTCAGTCCAACAACTA
*
33039190 GCTTCTCATCCAATTCTGTCCAACACAAATGAGTCC
196 GCTTCTCATCCAATTCTGTCCAACACAAAGGAGTCC
33039226 TACCCTTCTTACCATATCTCAAAACTTTTTGCCAAGGCGAAACTTTCAGAAACACCTTATCGCCA
1 TACCCTTCTTACCATATCTCAAAACTTTTTGCCAAGGCGAAACTTTCAGAAACACCTTATCGCCA
* * * **
33039291 ACTTGAAACTTGATATCTTTACATTTCAAATATGTATAAGATTTCTACTTATCAAATGTTGTTTT
66 ACTTGAAACTTGATATCTTAACATTTCAAATATGCATAAGATTTCTACTTATCAAATGCTACTTT
*
33039356 CAATCGTTCACAAATCAAATTTACTTCCTCGTTAATCTCTCAAACCAAATTCAGTCCAACAACTC
131 CAATCGTTCACAAATCAAATTTACTTCCTCGTTAATCTCTCAAACCAAATTCAGTCCAACAACTA
33039421 GCTTCTCATCCAATTCTGTCCAACACAAAGGAGTCC
196 GCTTCTCATCCAATTCTGTCCAACACAAAGGAGTCC
33039457 TACCCTTCTTACCATA
1 TACCCTTCTTACCATA
33039473 CACGCTTCAA
Statistics
Matches: 239, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
231 239 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (231 bp):
TACCCTTCTTACCATATCTCAAAACTTTTTGCCAAGGCGAAACTTTCAGAAACACCTTATCGCCA
ACTTGAAACTTGATATCTTAACATTTCAAATATGCATAAGATTTCTACTTATCAAATGCTACTTT
CAATCGTTCACAAATCAAATTTACTTCCTCGTTAATCTCTCAAACCAAATTCAGTCCAACAACTA
GCTTCTCATCCAATTCTGTCCAACACAAAGGAGTCC
Found at i:33046328 original size:49 final size:49
Alignment explanation
Indices: 33046256--33046520 Score: 416
Period size: 49 Copynumber: 5.5 Consensus size: 49
33046246 GTGTGTATAC
33046256 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
33046305 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33046354 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33046401 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
33046450 GTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33046497 GTGAAAGTGTATA-A-ATGTGATAAG
1 GTGAAAGTGTATATATATGTGATAAG
33046521 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 11, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
47 94 0.47
48 1 0.00
49 106 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:33046378 original size:96 final size:96
Alignment explanation
Indices: 33046256--33046520 Score: 426
Period size: 96 Copynumber: 2.8 Consensus size: 96
33046246 GTGTGTATAC
33046256 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
33046321 ATGTGATAAGGCCTAATGGTCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33046354 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
33046419 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
33046450 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-AT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
33046513 GTGATAAG
66 GTGATAAG
33046521 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
94 10 0.06
95 1 0.01
96 139 0.87
98 9 0.06
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:33046668 original size:37 final size:37
Alignment explanation
Indices: 33046612--33046690 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33046602 CCGAGCTCTA
* * *
33046612 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
33046649 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33046686 AAGAC
1 AAGAC
33046691 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33048877 original size:40 final size:40
Alignment explanation
Indices: 33048818--33049138 Score: 482
Period size: 40 Copynumber: 8.1 Consensus size: 40
33048808 AGGTCTCGAC
33048818 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33048857 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
33048897 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
33048937 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33048977 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
33049017 GATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
33049057 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
33049097 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
33049137 GA
1 GA
33049139 CGTGTATTCG
Statistics
Matches: 255, Mismatches: 26, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 4 0.02
40 251 0.98
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:33052621 original size:96 final size:94
Alignment explanation
Indices: 33052447--33052805 Score: 583
Period size: 96 Copynumber: 3.8 Consensus size: 94
33052437 GTGTGTATAC
33052447 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
33052512 GTGATAAGGCCTAATGGCCGATGTGATGAAT
64 GTGATAAGGCCTAATGGCCGATGTGATGAAT
33052543 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
33052608 GTGATAAGGCCTAATGGCCGATGTGATGAAT
64 GTGATAAGGCCTAATGGCCGATGTGATGAAT
33052639 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
33052704 GTGATAAGGCCTAATGGCCGATGTGATGAAT
64 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * * *
33052735 GTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
33052800 GATAAG
66 GATAAG
33052806 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
94 53 0.21
96 152 0.60
98 47 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:33052623 original size:47 final size:47
Alignment explanation
Indices: 33052447--33052805 Score: 583
Period size: 47 Copynumber: 7.5 Consensus size: 47
33052437 GTGTGTATAC
33052447 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33052494 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33052543 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33052592 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33052639 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
33052688 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * * *
33052735 GTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
33052782 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
33052806 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 11, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
47 154 0.52
49 143 0.48
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:33052980 original size:37 final size:37
Alignment explanation
Indices: 33052924--33053002 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33052914 CCGAGCTCTA
* * *
33052924 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
33052961 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33052998 AAGAC
1 AAGAC
33053003 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33056998 original size:30 final size:30
Alignment explanation
Indices: 33056950--33057140 Score: 165
Period size: 30 Copynumber: 6.4 Consensus size: 30
33056940 TGGTTGACAC
* * * *
33056950 ATCCCCTTTCGTAATTCGATAACCGAAGTT
1 ATCCCTTTTCATAGTTCGATAACCGAAGCT
* *
33056980 ATCCCTTTTTATAGTTCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTCGATAACCGAAGCT
* *
33057010 ATCCCTTTTCATTA-TTTGATAGCCGAAGCT
1 ATCCCTTTTCA-TAGTTCGATAACCGAAGCT
* *
33057040 ATCCCTTTTCATAGATCGATATA-CGAAGCC
1 ATCCCTTTTCATAGTTCGATA-ACCGAAGCT
*** * *
33057070 ATCCCTTTTCATAGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTCGATAACCG-AAGCT
* **
33057100 ATCCCTTTTCATAATT-GATAGTCGAAGCT
1 ATCCCTTTTCATAGTTCGATAACCGAAGCT
33057129 ATCCCTTTTCAT
1 ATCCCTTTTCAT
33057141 TCGTCGATAA
Statistics
Matches: 135, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 22 0.16
30 109 0.81
31 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTCGATAACCGAAGCT
Found at i:33057036 original size:60 final size:61
Alignment explanation
Indices: 33056964--33057149 Score: 193
Period size: 60 Copynumber: 3.1 Consensus size: 61
33056954 CCTTTCGTAA
* * * *
33056964 TTCGATAACCGAAGTTATCCCTTTTTATAGTTCGATAGCCGAAGCTATCCCTTTTCATTA-
1 TTCGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
* * * *
33057024 TTTGATAGCCGAAGCTATCCCTTTTCATAGATCGATATACGAAGCCATCCCTTTTCA-TAG
1 TTCGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
* * * * * * *
33057084 TTCGATGGTCGTCA-CCATCCCTTTTCATAATT-GATAGTCGAAGCTATCCCTTTTCATTCG
1 TTCGATAGCCG-AAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
33057144 -TCGATA
1 TTCGATA
33057150 ATCGCTGTTA
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
59 28 0.27
60 74 0.72
61 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (61 bp):
TTCGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGACGAAGCTATCCCTTTTCATTAG
Found at i:33063880 original size:30 final size:30
Alignment explanation
Indices: 33063839--33064065 Score: 176
Period size: 30 Copynumber: 7.6 Consensus size: 30
33063829 ACCATATTGT
*
33063839 ACCATCACTTTTCATAATTTGATAGTCGTC
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* * *
33063869 ACCATCCCTTTTCATAATTTAATGGTCGAC
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* ** ** * *
33063899 ATCATCCCTTTTCATTGTTCAATGGTCATC
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* * *
33063929 ACCATCCATTTTCATAATTTGATAGCCG-A
1 ACCATCCCTTTTCATAATTTGATAGTCGTC
* * * *
33063958 AGCTATCCCTTTTAATAGA-TCGATAGTCG-A
1 A-CCATCCCTTTTCATA-ATTTGATAGTCGTC
* * *
33063988 AGCCATCCCTTTTCATAGTTTGATGGTCATC
1 A-CCATCCCTTTTCATAATTTGATAGTCGTC
*
33064019 ACCATTCCTTTTCAT--TGTTGATAGTCGTC
1 ACCATCCCTTTTCATAAT-TTGATAGTCGTC
*
33064048 ACCATCCCTTTTCGTAAT
1 ACCATCCCTTTTCATAAT
33064066 CGATAGCTGG
Statistics
Matches: 153, Mismatches: 37, Indels: 13
0.75 0.18 0.06
Matches are distributed among these distances:
28 1 0.01
29 24 0.16
30 125 0.82
31 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (30 bp):
ACCATCCCTTTTCATAATTTGATAGTCGTC
Found at i:33063932 original size:60 final size:60
Alignment explanation
Indices: 33063839--33064065 Score: 203
Period size: 60 Copynumber: 3.8 Consensus size: 60
33063829 ACCATATTGT
* ** * * *
33063839 ACCATCACTTTTCATAATTTGATAGTCGTCACCATCCCTTTTCATAATTTAATGGTCGAC
1 ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAATTTGATGGTCGAC
* * * * * *
33063899 ATCATCCCTTTTCATTGTTCAATGGTCATCACCATCCATTTTCATAATTTGATAGCCGA-
1 ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAATTTGATGGTCGAC
* * * * *
33063958 AGCTATCCCTTTTAATAGATCGATAGTCGA--AGCCATCCCTTTTCATAGTTTGATGGTC-ATC
1 A-CCATCCCTTTTCATTGTTCGATAGTC-ATCA-CCATCCCTTTTCATAATTTGATGGTCGA-C
* * *
33064019 ACCATTCCTTTTCATTGTT-GATAGTCGTCACCATCCCTTTTCGTAAT
1 ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAAT
33064066 CGATAGCTGG
Statistics
Matches: 129, Mismatches: 31, Indels: 15
0.74 0.18 0.09
Matches are distributed among these distances:
59 25 0.19
60 102 0.79
61 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.39
Consensus pattern (60 bp):
ACCATCCCTTTTCATTGTTCGATAGTCATCACCATCCCTTTTCATAATTTGATGGTCGAC
Found at i:33064083 original size:29 final size:29
Alignment explanation
Indices: 33064051--33064118 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
33064041 AGTCGTCACC
*
33064051 ATCCCTTTTCGTA-ATCGATAGCTGGAA-CT
1 ATCCCTTTTCGTATA-CGATAGC-CGAAGCT
*
33064080 ATCCCTTTCCGTATACGATAGCCGAAGCT
1 ATCCCTTTTCGTATACGATAGCCGAAGCT
*
33064109 ATTCCTTTTC
1 ATCCCTTTTC
33064119 ATACGTCGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 3 0.09
29 29 0.88
30 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (29 bp):
ATCCCTTTTCGTATACGATAGCCGAAGCT
Found at i:33078777 original size:24 final size:23
Alignment explanation
Indices: 33078748--33078796 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
33078738 ATACATTATT
33078748 AAAATATA-GAAAATAGCAAATTGA
1 AAAATA-ACGAAAA-AGCAAATTGA
*
33078772 AAAATAACGAAAAATCAAATTGA
1 AAAATAACGAAAAAGCAAATTGA
33078795 AA
1 AA
33078797 TATCCACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.18
Consensus pattern (23 bp):
AAAATAACGAAAAAGCAAATTGA
Found at i:33080024 original size:50 final size:49
Alignment explanation
Indices: 33079961--33080336 Score: 248
Period size: 50 Copynumber: 7.5 Consensus size: 49
33079951 TTTGAAAAGT
* *
33079961 AAGATTTGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTTG-CGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** **** * *
33080011 AAGATTTGTCATTGTGGCTTTAATCTGTTCCACTGCACCACCTGGGAAGT
1 AAGATTTG-CGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** *
33080061 AAGATTCACTGTTGTAGCTTTGATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTTGC-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** ** * * *
33080111 AAGATTTTCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGT
1 AAGA-TTTGCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * * *
33080161 AAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATATCGAGAAAGC
1 AAGATTTGC-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** ** * * ** * * * * *
33080211 AAGATTCACCACTGTGGCTTTAATCTATTCCACTGTACTGCCTGGGAAGT
1 AAGATT-TGCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
*
33080261 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTTGC-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** *
33080311 AAGATTCACCGTTGTGGCTTTAATCT
1 AAGATT-TGCGTTGTAGCTTTAATCT
33080337 GTTCCACTAC
Statistics
Matches: 234, Mismatches: 86, Indels: 12
0.70 0.26 0.04
Matches are distributed among these distances:
49 5 0.02
50 224 0.96
51 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (49 bp):
AAGATTTGCGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
Found at i:33080130 original size:100 final size:100
Alignment explanation
Indices: 33079957--33080370 Score: 594
Period size: 100 Copynumber: 4.1 Consensus size: 100
33079947 AACTTTTGAA
* ** * ***
33079957 AAGTAAGATTTGCCATTGTAGCTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTGTCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
*
33080022 TTGTGGCTTTAATCTGTTCCACTGCACCACCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* * ** *
33080057 AAGTAAGATTCACTGTTGTAGCTTTGATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTTCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
33080122 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* * * *
33080157 AAGTAAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATATCGAGAAAGCAAGATTCACCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
* * * *
33080222 CTGTGGCTTTAATCTATTCCACTGTACTGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
*
33080257 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
* * * *
33080322 TTGTGGCTTTAATCTGTTCCACTACACTGCCAGGA
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
33080357 AAGTAAGATTCGCT
1 AAGTAAGATTCGCT
33080371 ATTCTCAGTC
Statistics
Matches: 280, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 280 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA
TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
Found at i:33080365 original size:50 final size:50
Alignment explanation
Indices: 33080022--33080367 Score: 280
Period size: 50 Copynumber: 6.9 Consensus size: 50
33080012 AGATTTGTCA
** *
33080022 TTGTGGCTTTAATCTGTTCCACTGCACCACCTGGGAAGTAAGATTCACTG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * * ** * * * * **
33080072 TTGTAGCTTTGATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTTCCG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * *
33080122 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * * ** * ** * * *
33080172 TTGTAGTTTTAATCTTTTTAACTGCAATATC-GAGAAAGCAAGATTCACCA
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTG-GGAAGTAAGATTCACCG
* * * * *
33080222 CTGTGGCTTTAATCTATTCCACTGTACTGCCTGGGAAGTAAGATTCGCTG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * ** * * * *
33080272 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
* * *
33080322 TTGTGGCTTTAATCTGTTCCACTACACTGCCAGGAAAGTAAGATTC
1 TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTC
33080368 GCTATTCTCA
Statistics
Matches: 216, Mismatches: 78, Indels: 4
0.72 0.26 0.01
Matches are distributed among these distances:
49 1 0.00
50 214 0.99
51 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (50 bp):
TTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTCACCG
Found at i:33080662 original size:132 final size:132
Alignment explanation
Indices: 33080526--33081849 Score: 1252
Period size: 132 Copynumber: 10.1 Consensus size: 132
33080516 ACTATAACTT
* * * * * *
33080526 CAGGGAGATAGGA-TTACTGGCTTTAATGTACCCCGCTGTATCCTTAGGGAGGTAAAG-TCCGCC
1 CAGGGAGATAGGACTTACTGGCTTAAATCTACTCC-CTGTAACCTCAGGGAGGTAAAGATTCGCC
* * * *
33080589 ATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTAC
65 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCCACTGC
33080654 T-ACC
129 TGA-C
* * * *
33080658 CAGGGAGATA-GAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGAAGGTAAA-ATTTGCC
1 CAGGGAGATAGGACTTACTGGCTTAAATCTACTCC-CTGTAACCTCAGGGAGGTAAAGATTCGCC
* * * ** *
33080721 ATCTTCGATCTGCTCCACTACTGCTTAGAGAGATGAGATCTGTAATTTTAAATATATTCCACTGG
65 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAACCTATTCCACTGC
33080786 T-ACC
129 TGA-C
* * * ** *
33080790 CAGGGAGATA-GAATTACTGGCTTCAATCTACTCTACTGTAACCTCAAAGAGGTAAA-ATCCGCC
1 CAGGGAGATAGGACTTACTGGCTTAAATCTACTC-CCTGTAACCTCAGGGAGGTAAAGATTCGCC
* * * *
33080853 ATCTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCACTGC
65 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCCACTGC
33080918 TGAC
129 TGAC
* *
33080922 CAGGGAGATA-GAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAA-A-TCTGC
1 CAGGGAGATAGGACTTACTGGCTTAAATCTACTCC-CTGTAACCTCAGGGAGGTAAAGATTC-GC
* * * ** *
33080984 CATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATATTTAATCTTCAATTTATTTCACTG
64 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCCACTG
*
33081049 TTGAC
128 CTGAC
* * **
33081054 CAGGGAGATA-GAATTACTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGGTAAA-A-TCTAT
1 CAGGGAGATAGGACTTACTGGCTTAAATCTACTCC-CTGTAACCTCAGGGAGGTAAAGATTC-GC
* * *
33081116 CATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCCACTG
64 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCCACTG
33081181 CTGAC
128 CTGAC
* * * * *
33081186 CAGGGAGATGGGACTT-GTGGCTTAAATCTGCTTCCC--T-A-CTCCTGGGTAAG-ATAAGATTC
1 CAGGGAGATAGGACTTACTGGCTTAAATCTAC-TCCCTGTAACCT-CAGGG-AGGTA-AAGATTC
* *
33081245 GCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCAC
62 GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAACCTATTCCAC
*
33081310 TACTGAC
126 TGCTGAC
* * * * *
33081317 CAGGGAGATAGGACTT-GTGGCTTAAATCTGCTTCCC--TACACCTGA-GAAGAT-AAGATTCGC
1 CAGGGAGATAGGACTTACTGGCTTAAATCTAC-TCCCTGTA-ACCTCAGGGAGGTAAAGATTCGC
** *
33081377 TGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATCTGTAATTTCAAACCTATTCCACTG
64 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTC-AACCTATTCCACTG
33081442 CTGAC
128 CTGAC
* * ** *
33081447 CAGGGAGATAGGACTT-GTGGCTTAAATCTGCTTCCC--T-ACTCTTGGGGAAG-ATAAGATTCG
1 CAGGGAGATAGGACTTACTGGCTTAAATCTAC-TCCCTGTAAC-CTCAGGGAGGTA-AAGATTCG
* *
33081507 TCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACT
63 CCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAACCTATTCCACT
33081572 GCTGAC
127 GCTGAC
* * * * * *
33081578 CAGGGAGATAGGACTT-GTGGCTTAAATCTGCTTCCCTGCT--CCTGAGGAAGAT-AAGATTCGT
1 CAGGGAGATAGGACTTACTGGCTTAAATCTAC-TCCCTG-TAACCTCAGGGAGGTAAAGATTCGC
* * * *
33081639 CGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCAACCTATTCCACTA
64 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAACCTATTCCACTG
*
33081704 CTGGC
128 CTGAC
* * * *
33081709 CAGGGAGATACGACTTA-TGGCTTAAATCTGCTTCCT-T-A-CTCCAGGGGAAG-ATAAGATTCG
1 CAGGGAGATAGGACTTACTGGCTTAAATCTACTCCCTGTAACCT-CA-GGGAGGTA-AAGATTCG
** * * * *
33081769 CCGCCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACT
63 CCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAACCTATTCCACT
33081834 GCTG-C
127 GCTGAC
33081839 TCAGGGAGATA
1 -CAGGGAGATA
33081850 AGGTCTACAA
Statistics
Matches: 1045, Mismatches: 109, Indels: 77
0.85 0.09 0.06
Matches are distributed among these distances:
128 7 0.01
129 10 0.01
130 127 0.12
131 391 0.37
132 496 0.47
133 11 0.01
134 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
CAGGGAGATAGGACTTACTGGCTTAAATCTACTCCCTGTAACCTCAGGGAGGTAAAGATTCGCCA
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAACCTATTCCACTGCTG
AC
Found at i:33081092 original size:43 final size:44
Alignment explanation
Indices: 33080899--33081104 Score: 147
Period size: 44 Copynumber: 4.7 Consensus size: 44
33080889 GATCTTTAAT
33080899 CTTCAATCTATTCCACTGCTGAC-CAGGGAGATAGAATTACTGG
1 CTTCAATCTATTCCACTGCTGACTCAGGGAGATAGAATTACTGG
* * * * * ***
33080942 CTTCAATCTACTCCACTG-TAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTATTCCACTGCTGA-CTCAGGGAGATAGAAT-TACTGG
* * * * *
33080987 CTTCGATCTGTTCCACTACTG-CTTAGGGAGATAAGATATTTAAT--
1 CTTCAATCTATTCCACTGCTGACTCAGGGAGAT-AGA-A-TTACTGG
* * *
33081031 CTTCAATTTATTTCACTGTTGAC-CAGGGAGATAGAATTACTGG
1 CTTCAATCTATTCCACTGCTGACTCAGGGAGATAGAATTACTGG
* *
33081074 CTTCAATCTACTCCACTG-TAACCTCAGGGAG
1 CTTCAATCTATTCCACTGCTGA-CTCAGGGAG
33081105 GTAAAATCTA
Statistics
Matches: 120, Mismatches: 31, Indels: 23
0.69 0.18 0.13
Matches are distributed among these distances:
41 4 0.03
42 5 0.04
43 37 0.31
44 51 0.43
45 19 0.16
46 3 0.03
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
CTTCAATCTATTCCACTGCTGACTCAGGGAGATAGAATTACTGG
Found at i:33081301 original size:131 final size:128
Alignment explanation
Indices: 33080585--33081849 Score: 1219
Period size: 131 Copynumber: 9.6 Consensus size: 128
33080575 AGGTAAAGTC
* * *
33080585 CGCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCCA
* * * * * * *
33080650 CTACT-ACCCAGGGAGATAGAATTACTGGCTTCAATCTAC-TCCACTGTA-ACCTCAGGAAGGTA
65 CTGCTGA-CCAGGGAGATAGACTT-CTGGCTTAAATCTGCTTCC-C--TACTCCT-GGGAAGATA
*
33080712 AAATT
124 AGATT
* * * * **
33080717 TGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATGAGATCTGTAATTTTAAATATATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAACCTATTCCA
* * * * ** * **
33080782 CTGGT-ACCCAGGGAGATAGAATTACTGGCTTCAATCTACTCTACTGTA-ACCT-CAAAGAGGTA
65 CTGCTGA-CCAGGGAGATAGACTT-CTGGCTTAAATCTGCT-T-CCCTACTCCTGGGAAGA--TA
* *
33080844 AAATC
124 AGATT
* * * *
33080849 CGCCATCTTCGATCTACTCTACTACTGCTTAGGGAGATAAGATCTTTAATCTTCAATCTATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCCA
* * * * *
33080914 CTGCTGACCAGGGAGATAGAATTACTGGCTTCAATCTAC-TCCACTGTAAC-CTCAGGG-AGGTA
65 CTGCTGACCAGGGAGATAGACTT-CTGGCTTAAATCTGCTTCC-C--T-ACTC-CTGGGAAGATA
*
33080976 A-AAT
124 AGATT
* * * ** *
33080980 CTGCCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATATTTAATCTTCAATTTATTTC
1 C-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCC
* * * * * *
33081045 ACTGTTGACCAGGGAGATAGAATTACTGGCTTCAATCTAC-TCCACTGTAAC-CTCAGGG-AGGT
64 ACTGCTGACCAGGGAGATAGACTT-CTGGCTTAAATCTGCTTCC-C--T-ACTC-CTGGGAAGAT
*
33081107 AA-AAT
123 AAGATT
** * * *
33081112 CTATCATCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGATCTTTAATCTTCAACCTATTCC
1 C-GCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCAACCTATTCC
* *
33081177 ACTGCTGACCAGGGAGATGGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGTAAGATAAGA
64 ACTGCTGACCAGGGAGAT-AGACTTCTGGCTTAAATCTGCTTCCCTACTCCTGGG-AAGATAAGA
33081242 TT
127 TT
* *
33081244 CGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCTATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAACCTATTCCA
* * * *
33081309 CTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACACCTGAGAAGATAAGATT
65 CTGCTGACCAGGGAGATA-GACTTCTGGCTTAAATCTGCTTCCCTACTCCTGGGAAGATAAGATT
** *
33081374 CGCTGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATCTGTAATTTCAAACCTATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTC-AACCTATTCCA
* *
33081439 CTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGAT
65 CTGCTGACCAGGGAGATA-GACTTCTGGCTTAAATCTGCTTCCCTACTCCT-GGGAAGATAAGAT
33081504 T
128 T
* *
33081505 CGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAACCTATTCCA
* *
33081570 CTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTGCTCCTGAGGAAGATAAGAT
65 CTGCTGACCAGGGAGATA-GACTTCTGGCTTAAATCTGCTTCCCTACTCCTG-GGAAGATAAGAT
33081635 T
128 T
* * * *
33081636 CGTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCAACCTATTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT-CAACCTATTCCA
* * * * *
33081701 CTACTGGCCAGGGAGATACGACTTATGGCTTAAATCTGCTTCCTTACTCCAGGGGAAGATAAGAT
65 CTGCTGACCAGGGAGATA-GACTTCTGGCTTAAATCTGCTTCCCTACTCC-TGGGAAGATAAGAT
33081766 T
128 T
** * * * *
33081767 CGCCGCCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCA
1 CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTCAACCTATTCCA
33081832 CTGCTG-CTCAGGGAGATA
65 CTGCTGAC-CAGGGAGATA
33081850 AGGTCTACAA
Statistics
Matches: 1004, Mismatches: 98, Indels: 63
0.86 0.08 0.05
Matches are distributed among these distances:
129 8 0.01
130 129 0.13
131 434 0.43
132 417 0.42
133 11 0.01
134 4 0.00
135 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (128 bp):
CGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCAACCTATTCCAC
TGCTGACCAGGGAGATAGACTTCTGGCTTAAATCTGCTTCCCTACTCCTGGGAAGATAAGATT
Found at i:33081828 original size:44 final size:43
Alignment explanation
Indices: 33081780--33082068 Score: 153
Period size: 44 Copynumber: 6.6 Consensus size: 43
33081770 CGCCTTTGAT
*
33081780 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* * *
33081824 CTACTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* * * * * * *
33081868 CTATTCCACTGCTG-TCCAGGGAGATAGGAT-T-AGTGGCTTAAAT
1 CTACTCCACTACTGCT-TAGGGAGATAAGATCTCAAT--CTTCAAC
* * * * *
33081911 CTGCTTCC-CTAC--CTCTGGGGAAGATAAGAT-TCACTGTCTTCGAT
1 CTAC-TCCACTACTGCT-TAGGG-AGATAAGATCTCA--ATCTTCAAC
* * *
33081955 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* ** * * * *
33081999 CGACTCCACTGTTGCTCAAGGAGATAAGGTCTACAATCTTGAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCT-CAATCTTCAAC
* *
33082043 ATATTCCACTACTG-TCTAGGGAGATA
1 CTACTCCACTACTGCT-TAGGGAGATA
33082069 GGACTAGTGG
Statistics
Matches: 187, Mismatches: 43, Indels: 30
0.72 0.17 0.12
Matches are distributed among these distances:
41 2 0.01
42 5 0.03
43 25 0.13
44 145 0.78
45 5 0.03
46 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
CTACTCCACTACTGCTTAGGGAGATAAGATCTCAATCTTCAAC
Found at i:33081849 original size:175 final size:176
Alignment explanation
Indices: 33081652--33082185 Score: 763
Period size: 175 Copynumber: 3.1 Consensus size: 176
33081642 CTTCGATCAG
* * * ** *
33081652 CTCCACTACTGCTTAAGGAGATAAGATCTGTAAT-TTCCAACCTATTCCACTACTGGCCAGGGAG
1 CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTT-CAACCTATTCCACTACTGTCCAGGGAG
* * * * * *
33081716 ATACGACTTA-TGGCTTAAATCTGCTTCCTTACTCCAGGGGAAGATAAGATTCGCCGCCTTTGAT
65 ATAGGACTTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCTGTCTTCGAT
*
33081780 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTA
130 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
* *
33081827 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTATTCCACTGCTGTCCAGGGAGA
1 CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGA
*
33081892 TAGGA-TTAGTGGCTTAAATCTGCTTCCCTAC-CTCTGGGGAAGATAAGATTCACTGTCTTCGAT
66 TAGGACTTAGTGGCTTAAATCTGCTTCCCTACTC-CTGGGGAAGATAAGATTCGCTGTCTTCGAT
* *
33081955 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCGA
130 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
* * * *
33082002 CTCCACTGTTGCTCAAGGAGATAAGGTCTACAATCTTGAACATATTCCACTACTGTCTAGGGAGA
1 CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGA
* *
33082067 TAGGAC-TAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATATGATTCGTTGTCTTCGATC
66 TAGGACTTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCTGTCTTCGATC
* * *
33082131 TACTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTAACCTG
131 TACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
*
33082177 CTCCGCTGC
1 CTCCACTGC
33082186 AACCCAGGGA
Statistics
Matches: 320, Mismatches: 34, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
174 4 0.01
175 313 0.98
176 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (176 bp):
CTCCACTGCTGCTCAAGGAGATAAGGTCTACAATCTTCAACCTATTCCACTACTGTCCAGGGAGA
TAGGACTTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCGCTGTCTTCGATC
TACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
Found at i:33082223 original size:306 final size:303
Alignment explanation
Indices: 33081431--33082196 Score: 782
Period size: 306 Copynumber: 2.5 Consensus size: 303
33081421 AATTTCAAAC
* * *
33081431 CTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAA
1 CTATTCCACTACTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAA
* * *
33081496 GATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAA
66 GATAAGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
* * *
33081561 CCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTGCTCCTGAGGA
131 CCTATTCCACTGC-AACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTCCTCCTGAGGA
*
33081626 AGATAAGATTCGTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCA
195 AGATAAGATTCCTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCA
* * * *
33081691 ACCTATTCCACTACTGGCCAGGGAGATACGACTTATGGCTTAAAT
260 ACCGACTCCACTACTGGCCAAGGAGATACGACTAAT-GCTTAAAT
* * * * * * * ** *
33081736 CTGCTTCC-TTAC--TCCAGGGGAAGATAAGATTCGCCGCCTTTGATCTAC-TCCACTACTGCTT
1 CT-ATTCCACTACTGTCCA-GGG-AGATAGGACTAG-TGGCTTAAATCTGCTTCC-CTACT-CTT
* ** * * * * * **
33081797 AGGG-AGATAAGATCTGCAAT-T-TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTCTACA
60 GGGGAAGATAAGAT-T-CGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTA
* ** *
33081859 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGATTAGTGGCTTAAATCTGCTTCCCTACC
123 ATTTTCAACCTATTCCACTGC-AACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCT-CC
* * *
33081924 T-CTGGGGAAGATAAGATTCACT-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
186 TCCTGAGGAAGATAAGATTC-CTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCT
* * * * * *
33081987 GTAATTTTCAACCGACTCCACT-GTTGCTCAAGGAGATAAGGTCTACAAT-CTTGAA-
250 GTAATTTCCAACCGACTCCACTACTGGC-CAAGGAGAT-ACGACT--AATGCTTAAAT
* *
33082042 CATATTCCACTACTGTCTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGA
1 C-TATTCCACTACTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGA
* * *
33082107 AGATATGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTA
65 AGATAAGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCA
** *
33082172 ACCTGCTCCGCTGCAACCCAGGGAG
130 ACCTATTCCACTGCAA-CCAGGGAG
33082197 GCAAGGCTGG
Statistics
Matches: 363, Mismatches: 75, Indels: 45
0.75 0.16 0.09
Matches are distributed among these distances:
303 3 0.01
304 5 0.01
305 26 0.07
306 284 0.78
307 36 0.10
308 4 0.01
309 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (303 bp):
CTATTCCACTACTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAA
GATAAGATTCGTTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
CCTATTCCACTGCAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTCCTCCTGAGGAA
GATAAGATTCCTCGTCTTCGATCAGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATTTCCAA
CCGACTCCACTACTGGCCAAGGAGATACGACTAATGCTTAAAT
Found at i:33084428 original size:29 final size:29
Alignment explanation
Indices: 33084387--33084498 Score: 99
Period size: 29 Copynumber: 3.9 Consensus size: 29
33084377 TTTTCTTTTC
* *
33084387 TTTTTCTTTTTTTCATTTTGATTTTGATT
1 TTTTTATTTTTTTCATTTTGATTTTCATT
*
33084416 TTTTTATTTTTTTCATTTT--TTCTTTA-T
1 TTTTTATTTTTTTCATTTTGATT-TTCATT
* *
33084443 TTTTTGTTTTTTTC-TTTCTTATTTTCATT
1 TTTTTATTTTTTTCATTT-TGATTTTCATT
33084472 TTTTTGATTTTTTT-ATTGATTGATTTT
1 TTTTT-ATTTTTTTCATT--TTGATTTT
33084499 TTTTATATTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
26 3 0.04
27 17 0.25
28 6 0.09
29 26 0.38
30 9 0.13
31 6 0.09
32 1 0.01
ACGTcount: A:0.11, C:0.06, G:0.05, T:0.78
Consensus pattern (29 bp):
TTTTTATTTTTTTCATTTTGATTTTCATT
Found at i:33084441 original size:20 final size:20
Alignment explanation
Indices: 33084414--33084475 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
33084404 TTGATTTTGA
33084414 TTTT-TTTATTTTTTTCATT
1 TTTTCTTTATTTTTTTCATT
33084433 TTTTCTTTATTTTTTGT--TT
1 TTTTCTTTATTTTTT-TCATT
* *
33084452 TTTTCTTTCTTATTTTCATT
1 TTTTCTTTATTTTTTTCATT
33084472 TTTT
1 TTTT
33084476 TGATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
18 1 0.03
19 19 0.51
20 16 0.43
21 1 0.03
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTTCTTTATTTTTTTCATT
Found at i:33084467 original size:56 final size:57
Alignment explanation
Indices: 33084377--33084485 Score: 152
Period size: 56 Copynumber: 1.9 Consensus size: 57
33084367 TGGCCTCTCC
*
33084377 TTTTCTTTTCTTTTTCTTTTTTTCATTTTGATTTTGATTTTTTT-ATTTTTTTCATT
1 TTTTCTTTTCTTTTTCTTTTTTTCATTTTGATTTTCATTTTTTTGATTTTTTTCATT
* *
33084433 TTTTCTTTAT-TTTTTGTTTTTTTC-TTTCTTATTTTCATTTTTTTGATTTTTTT
1 TTTTCTTT-TCTTTTTCTTTTTTTCATTT-TGATTTTCATTTTTTTGATTTTTTT
33084486 ATTGATTGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
55 3 0.06
56 35 0.74
57 9 0.19
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (57 bp):
TTTTCTTTTCTTTTTCTTTTTTTCATTTTGATTTTCATTTTTTTGATTTTTTTCATT
Found at i:33094146 original size:46 final size:46
Alignment explanation
Indices: 33094076--33094169 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
33094066 CAAAGAAAAG
33094076 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
*
33094122 ACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
33094168 AC
1 AC
33094170 GCCACACTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
Found at i:33098851 original size:39 final size:39
Alignment explanation
Indices: 33098807--33098882 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
33098797 AAATAATTCA
* * *
33098807 AATATTTATTAATAGTAAAGATTATTGAATAATATTATT
1 AATATTTATTAATAATAAAAATTATTGAAAAATATTATT
* *
33098846 AATATTTTTTAATAATAAAAATTATTTAAAAATATTA
1 AATATTTATTAATAATAAAAATTATTGAAAAATATTA
33098883 AAATACATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (39 bp):
AATATTTATTAATAATAAAAATTATTGAAAAATATTATT
Found at i:33100106 original size:24 final size:24
Alignment explanation
Indices: 33100066--33100111 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
33100056 GCCACATGCT
*
33100066 CGTGTGTCAGGCCGTGTGGTAGGC
1 CGTGTGTCAGGCCGTGTAGTAGGC
*
33100090 CGTGTGTC-GAGCGGTGTAGTAG
1 CGTGTGTCAG-GCCGTGTAGTAG
33100112 ACCATGTAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.11, C:0.17, G:0.46, T:0.26
Consensus pattern (24 bp):
CGTGTGTCAGGCCGTGTAGTAGGC
Found at i:33101265 original size:20 final size:19
Alignment explanation
Indices: 33101242--33101284 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
33101232 TCTTCAACTC
*
33101242 TGTTCTGTTCTATTCTATTT
1 TGTTATGTTCTATTCT-TTT
*
33101262 TGTTATGTTCTGTTCTTTT
1 TGTTATGTTCTATTCTTTT
33101281 TGTT
1 TGTT
33101285 TTTTTGGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.07, C:0.12, G:0.14, T:0.67
Consensus pattern (19 bp):
TGTTATGTTCTATTCTTTT
Found at i:33105956 original size:5 final size:5
Alignment explanation
Indices: 33105948--33105973 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33105938 GAGATGGAAT
33105948 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
33105974 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:33106850 original size:31 final size:30
Alignment explanation
Indices: 33106788--33106850 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
33106778 GGAGGGGAGG
* *
33106788 GGAGTAAAAATTTTGGGGGGAAAGTGGAAA
1 GGAGTAAAAATTTTGGGGGAAAAGTAGAAA
* *
33106818 GGAGTAAAAGTTTTTGGGGGAAAAGTATAAA
1 GGAGTAAAA-ATTTTGGGGGAAAAGTAGAAA
33106849 GG
1 GG
33106851 TTTGAGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 9 0.32
31 19 0.68
ACGTcount: A:0.40, C:0.00, G:0.38, T:0.22
Consensus pattern (30 bp):
GGAGTAAAAATTTTGGGGGAAAAGTAGAAA
Found at i:33106906 original size:9 final size:9
Alignment explanation
Indices: 33106892--33106924 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
33106882 TATAGTTTGA
33106892 TATTCGAAT
1 TATTCGAAT
33106901 TATTCGAAT
1 TATTCGAAT
*
33106910 TATTCGAGT
1 TATTCGAAT
33106919 TATTCG
1 TATTCG
33106925 TATTTGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:33107373 original size:17 final size:18
Alignment explanation
Indices: 33107344--33107378 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
33107334 ACTAAAAATT
33107344 TATTTTAAAAATAAAAAA
1 TATTTTAAAAATAAAAAA
33107362 TATTTT-AAAATAAAAAA
1 TATTTTAAAAATAAAAAA
33107379 GTAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TATTTTAAAAATAAAAAA
Found at i:33107986 original size:27 final size:28
Alignment explanation
Indices: 33107945--33108001 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
33107935 ATTTTTTAAT
* *
33107945 TTAAAATTTAAAAAAATTA-AAAAATTA
1 TTAAAATATAAAAAAATTATAAAAAATA
*
33107972 TTAAAATATATAAAAATTATAAAAAATA
1 TTAAAATATAAAAAAATTATAAAAAATA
33108000 TT
1 TT
33108002 TTTATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
TTAAAATATAAAAAAATTATAAAAAATA
Found at i:33108000 original size:18 final size:18
Alignment explanation
Indices: 33107946--33108000 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
33107936 TTTTTTAATT
*
33107946 TAAAATTTA-AAAAAAT-
1 TAAAAATTATAAAAAATA
*
33107962 TAAAAAATTATTAAAATATA
1 T-AAAAATTA-TAAAAAATA
33107982 TAAAAATTATAAAAAATA
1 TAAAAATTATAAAAAATA
33108000 T
1 T
33108001 TTTTATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.03
17 7 0.22
18 9 0.28
19 14 0.44
20 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAATTATAAAAAATA
Found at i:33108504 original size:18 final size:17
Alignment explanation
Indices: 33108481--33108526 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
33108471 ATTTAAATTG
33108481 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCG-TTT
*
33108499 CGGTCGC-GTCACGTTT
1 CGGTCGCGGTCGCGTTT
33108515 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
33108527 GACATAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
16 3 0.12
17 5 0.20
18 7 0.28
ACGTcount: A:0.02, C:0.30, G:0.39, T:0.28
Consensus pattern (17 bp):
CGGTCGCGGTCGCGTTT
Found at i:33110340 original size:14 final size:14
Alignment explanation
Indices: 33110302--33110344 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
33110292 TAAAATGTAC
33110302 AATATAATTAAA-T
1 AATATAATTAAATT
33110315 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
33110330 AA-ATAATTTAATT
1 AATATAATTAAATT
33110343 AA
1 AA
33110345 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:33112830 original size:3 final size:3
Alignment explanation
Indices: 33112822--33112921 Score: 74
Period size: 3 Copynumber: 33.0 Consensus size: 3
33112812 GTAAAAAATT
**
33112822 TAA TAA TAA TAA TAA TAA TGG TAA TAAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
* * * * * * * ** * *
33112868 TAA TCA TGA TGA TGA TGA TGA TGA TGG TAT TAA TAA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
33112916 TAA TAA
1 TAA TAA
33112922 AATCTTAAAA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
3 81 0.96
4 3 0.04
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:33119911 original size:19 final size:18
Alignment explanation
Indices: 33119877--33119915 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
33119867 TTAGAAAGGC
33119877 ATTTTAAATAATATATAA
1 ATTTTAAATAATATATAA
33119895 ATTTTATAATATCATATATAA
1 ATTTTA-AATA--ATATATAA
33119916 TATTACAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
21 8 0.44
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTTAAATAATATATAA
Found at i:33121060 original size:29 final size:27
Alignment explanation
Indices: 33121019--33121081 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 27
33121009 ATGTGTTTTA
*
33121019 TAAAAAAATTATTTA-AATAATAACATAT
1 TAAAAAAATTATTGATAA-AATAACAT-T
33121047 TAAATAAAATTATTGATAAAATAACATT
1 TAAA-AAAATTATTGATAAAATAACATT
33121075 TAAAAAA
1 TAAAAAA
33121082 TATAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.09
28 9 0.28
29 18 0.56
30 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAAAAATTATTGATAAAATAACATT
Found at i:33126493 original size:4 final size:4
Alignment explanation
Indices: 33126484--33126514 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
33126474 AGAATAAACT
33126484 AATA AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT
33126515 TATTTAACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:33138336 original size:50 final size:50
Alignment explanation
Indices: 33138269--33138460 Score: 253
Period size: 50 Copynumber: 3.8 Consensus size: 50
33138259 TTTCATGCAC
* * * * *
33138269 TGCCAATGCCATATCCCAGATATGGTTTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
*
33138319 TGCCCATGCCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAG--CTCTCATCTCGG
* * * *
33138369 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
*
33138419 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCT
33138461 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
48 5 0.04
50 115 0.93
52 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
Found at i:33140105 original size:9 final size:9
Alignment explanation
Indices: 33140093--33140135 Score: 86
Period size: 9 Copynumber: 4.8 Consensus size: 9
33140083 CTATAGAGAC
33140093 TAAAATGAA
1 TAAAATGAA
33140102 TAAAATGAA
1 TAAAATGAA
33140111 TAAAATGAA
1 TAAAATGAA
33140120 TAAAATGAA
1 TAAAATGAA
33140129 TAAAATG
1 TAAAATG
33140136 CAAAATATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (9 bp):
TAAAATGAA
Found at i:33144071 original size:67 final size:66
Alignment explanation
Indices: 33143861--33144075 Score: 166
Period size: 67 Copynumber: 3.2 Consensus size: 66
33143851 GATCGAAATT
* *
33143861 AATTAATATAACTGTCTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAAT
1 AATTAATATAACTATTTATATTAATAAA-TTAGTAAAATATATACAATTAATATTTTGTATGAAT
33143926 CA
65 CA
* * * * * * * * **** *
33143928 AATTCATAT-ATTAATTATATTATTTCCAAAATAATATTAATTTCCATGTTGTTTATATTTTG-A
1 AATTAATATAACTATTTATATTA-AT--AAATTAGTA-AAATAT--ATACAATTAATATTTTGTA
33143991 TCGAAAT-A
60 T-G-AATCA
* *
33143999 TATTAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAAT
1 AATTAATATAACTATTTATATTAATAAATT-AGTAAAATATATACAATTAATATTTTGTATGAAT
33144064 CA
65 CA
33144066 AATTAATATA
1 AATTAATATA
33144076 TTAGTTATAT
Statistics
Matches: 105, Mismatches: 31, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
66 12 0.11
67 32 0.30
68 6 0.06
69 15 0.14
70 4 0.04
71 22 0.21
72 14 0.13
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.44
Consensus pattern (66 bp):
AATTAATATAACTATTTATATTAATAAATTAGTAAAATATATACAATTAATATTTTGTATGAATC
A
Found at i:33144210 original size:135 final size:135
Alignment explanation
Indices: 33143801--33144216 Score: 577
Period size: 138 Copynumber: 3.0 Consensus size: 135
33143791 TAGAAAAATA
* * ** *
33143801 AATTATATTCATTCTAAAAGAATATTAATTTATATATTTTTTAATATTTTGATCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCAT-GTTTTT-ATATTTTGATCGAAATTAATTA
* *
33143866 ATATAACTGTCTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
64 ATATAAC--TATATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
33143931 TCATATATT
127 TCATATATT
* *
33143940 AATTATATTATTTCCAAAATAATATTAATTTCCATGTTGTTTATATTTTGATCGAAA-TATATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTT-TTTATATTTTGATCGAAATTA-ATTA
*
33144004 ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
64 ATATAACTA--TATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
*
33144069 TAATATATT
127 TCATATATT
* * * *
33144078 AGTTATATTCTTTCCAAAAGATTAATAATTTCCATGTCTTTTATATTTTGA-CTAAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGT-TTTTATATTTTGATC-GAAATTAATTA
*
33144142 ATATAACTAT-TATTAATAAATTTGGTAACATATATACAATTAATATTTTGTATGAATCAAATTC
64 ATATAACTATATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTC
33144206 ATATATT
129 ATATATT
33144213 AATT
1 AATT
33144217 TTATCTATGT
Statistics
Matches: 249, Mismatches: 21, Indels: 18
0.86 0.07 0.06
Matches are distributed among these distances:
135 61 0.24
136 2 0.01
137 3 0.01
138 148 0.59
139 35 0.14
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.46
Consensus pattern (135 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTTTTTATATTTTGATCGAAATTAATTAAT
ATAACTATATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:33150966 original size:138 final size:138
Alignment explanation
Indices: 33150718--33151409 Score: 1052
Period size: 138 Copynumber: 5.0 Consensus size: 138
33150708 TAGAAAAATA
* *
33150718 AATTATATTCTTTCTAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
33150783 TGTAGCTGTTTATATTAATAAA-TCTGCTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 TATAACTGTTTATATTAATAAATTCTG-TAAAATATATACAATTAATATTTTGTATGAATCAAAT
*
33150847 TCATATGTT
130 TCATATATT
* * * * *
33150856 AATTATATTATTTCCAAAATAGTATTAATTTCCATGTCTTTTATATTTTGATCAAAATCT-ATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAAT-TAATTA
* *
33150920 ATATAACTATTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATGAATGAAAT
65 ATATAACTGTTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
* *
33150985 TAATATTTT
130 TCATATATT
* * * *
33150994 AATTATATTCTTTCCAAAAGAATAATAATTTCTATGTCTTTTATATTTTGAACGAAATTAATGAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
33151059 TATAACTGTTTGTATTAGTAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATC-AA-T
66 TATAACTGTTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
33151122 AATATATT
131 CATATATT
* * * *
33151130 AATTAAATTCTTTCCAAAAGATTATTAATTTCCATGTCTTTTATATTTTGACTGAATTTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
33151195 TATAACTGTTTTTATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
33151260 CATATATT
131 CATATATT
* *
33151268 AATTATATTCATTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
33151333 TATAACTGTTTATATTAATAAATT-TGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 TATAACTGTTTATATTAATAAATTCT-GTAAAATATATACAATTAATATTTTGTATGAATCAAAT
33151397 TCATATATT
130 TCATATATT
33151406 AATT
1 AATT
33151410 GTAACGACCC
Statistics
Matches: 502, Mismatches: 46, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
136 123 0.25
137 5 0.01
138 369 0.74
139 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:33151236 original size:274 final size:276
Alignment explanation
Indices: 33150718--33151409 Score: 1070
Period size: 274 Copynumber: 2.5 Consensus size: 276
33150708 TAGAAAAATA
*
33150718 AATTATATTCTTTCTAAAAGAATATTAATTT-TCATGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCT-ATGTCTTTTATATTTTGACCGAAATTAATTA
* * *
33150782 ATGTAGCTGTTTATATTAATAAA-TCTGCTAAAATATATACAATTAATATTTTGTATGAATCAAA
65 ATATAACTGTTTATATTAATAAATTC-GGTAAAATATATACAATTAATATTTTGTATGAATCAAA
* * *
33150846 TTCATATGTTAATTATATTATTTCCAAAATAGTATTAATTTCCATGTCTTTTATATTTTGATCAA
129 TTCATATATTAATTAAATTATTTCCAAAAGAGTATTAATTTCCATGTCTTTTATATTTTGATCAA
*
33150911 AATCTATTAATATAACTATTTATATTAATAAATTCTGTAAAATATATACAATTAATATTTTGTAT
194 AATCTATTAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTAT
* *
33150976 GAATGAAATTAATATTTT
259 GAATCAAATTAATATATT
* * *
33150994 AATTATATTCTTTCCAAAAGAATAATAATTTCTATGTCTTTTATATTTTGAACGAAATTAATGAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
33151059 TATAACTGTTTGTATTAGTAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATC-AA-T
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
* * * **
33151122 AATATATTAATTAAATTCTTTCCAAAAGATTATTAATTTCCATGTCTTTTATATTTTGA-CTGAA
131 CATATATTAATTAAATTATTTCCAAAAGAGTATTAATTTCCATGTCTTTTATATTTTGATCAAAA
* * *
33151186 TTTAATTAATATAACTGTTTTTATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATG
196 TCT-ATTAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATG
*
33151251 AATCAAATTCATATATT
260 AATCAAATTAATATATT
* * *
33151268 AATTATATTCATTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
*
33151333 TATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
33151398 CATATATTAATT
131 CATATATTAATT
33151410 GTAACGACCC
Statistics
Matches: 377, Mismatches: 34, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
273 5 0.01
274 242 0.64
275 4 0.01
276 123 0.33
277 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (276 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATTAATTAAATTATTTCCAAAAGAGTATTAATTTCCATGTCTTTTATATTTTGATCAAAA
TCTATTAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGA
ATCAAATTAATATATT
Found at i:33151403 original size:67 final size:67
Alignment explanation
Indices: 33151172--33151403 Score: 158
Period size: 67 Copynumber: 3.4 Consensus size: 67
33151162 CATGTCTTTT
** * *
33151172 ATATTTTGACTGAATTTAATTAATATAACTGTTTTTATTAATAAATTCGGTAAAATATATACAAT
1 ATATTTTGACTGAATCAAATTAATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAAT
33151237 TA
66 TA
* * * **
33151239 ATATTTTGTA-TGAATCAAATTCATATATTAA-T-TATATTCATTCCAAAAGAATAT--TAATTT
1 ATATTTTG-ACTGAATCAAATT-A-ATA-TAACTGTTTA-T-ATT--AATA-AATTTGGTAAAAT
* *
33151299 CCATAT-C-TTTT
57 --ATATACAATTA
* *
33151310 ATATTTTGACCGAAAT-TAATTAATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAA
1 ATATTTTGACTG-AATCAAATTAATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAA
33151374 TTA
65 TTA
*
33151377 ATATTTTGTA-TGAATCAAATTCATATA
1 ATATTTTG-ACTGAATCAAATTAATATA
33151404 TTAATTGTAA
Statistics
Matches: 121, Mismatches: 23, Indels: 42
0.65 0.12 0.23
Matches are distributed among these distances:
65 8 0.07
66 7 0.06
67 41 0.34
68 11 0.09
69 10 0.08
70 11 0.09
71 19 0.16
72 7 0.06
73 7 0.06
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.44
Consensus pattern (67 bp):
ATATTTTGACTGAATCAAATTAATATAACTGTTTATATTAATAAATTTGGTAAAATATATACAAT
TA
Found at i:33151596 original size:39 final size:40
Alignment explanation
Indices: 33151538--33151769 Score: 218
Period size: 40 Copynumber: 5.8 Consensus size: 40
33151528 CAGTTATAAG
* *
33151538 TCGAGCATTAGGGGCGCTTTTTGAAAAGTGCCGCTATAGA
1 TCGAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGA
* *
33151578 -CGAGCATTAGCGGTGCTTTTTGAAAAATGCCACTATAGA
1 TCGAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGA
* * * ** * * *
33151617 TCGAGCATTAGTGGCACTGTTCAAAAAACGCTGCTATAGG
1 TCGAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGA
* * *
33151657 TCGACCATTAGCGGTGCTTTTT-TAAAATCGCCGCTATAGA
1 TCGAGCATTAGCGGCGCTTTTTGAAAAAT-GCCGCTATAGA
** ** * *
33151697 TCGAGCATTATAGGCGCTTTTCAAAAAACGCCGCTATAGG
1 TCGAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGA
* * *
33151737 TCGACCACTAGCGGCGC-TTTTGAAAAACGCCGC
1 TCGAGCATTAGCGGCGCTTTTTGAAAAATGCCGC
33151770 AAAAAAGTTA
Statistics
Matches: 151, Mismatches: 38, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
39 53 0.35
40 94 0.62
41 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (40 bp):
TCGAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGA
Found at i:33151695 original size:80 final size:80
Alignment explanation
Indices: 33151567--33151763 Score: 267
Period size: 80 Copynumber: 2.5 Consensus size: 80
33151557 TTTGAAAAGT
* *
33151567 GCCGCTATA-GACGAGCATTAGCGGTGCTTTTTGAAAAATGCCACTATAGATCGAGCATTAGT-G
1 GCCGCTATAGGTCGACCATTAGCGGTGCTTTTTGAAAAATGCCACTATAGATCGAGCATTA-TAG
33151630 GCACTGTTCAAAAAAC
65 GCACTGTTCAAAAAAC
* * *
33151646 GCTGCTATAGGTCGACCATTAGCGGTGCTTTTT-TAAAATCGCCGCTATAGATCGAGCATTATAG
1 GCCGCTATAGGTCGACCATTAGCGGTGCTTTTTGAAAAAT-GCCACTATAGATCGAGCATTATAG
* *
33151710 GCGCTTTTCAAAAAAC
65 GCACTGTTCAAAAAAC
* *
33151726 GCCGCTATAGGTCGACCACTAGCGGCGC-TTTTGAAAAA
1 GCCGCTATAGGTCGACCATTAGCGGTGCTTTTTGAAAAA
33151764 CGCCGCAAAA
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
79 18 0.17
80 85 0.83
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (80 bp):
GCCGCTATAGGTCGACCATTAGCGGTGCTTTTTGAAAAATGCCACTATAGATCGAGCATTATAGG
CACTGTTCAAAAAAC
Found at i:33151766 original size:119 final size:119
Alignment explanation
Indices: 33151520--33151751 Score: 277
Period size: 119 Copynumber: 1.9 Consensus size: 119
33151510 GCGTTTGGAT
* * *
33151520 AAAAAACGCAGTTATAAGTCGAGCATTAGGGGCGCTTTTTGAAAAGTGCCGCTATAGACGAGCAT
1 AAAAAACGCAGCTATAAGTCGACCATTAGCGGCGCTTTTTGAAAAGTGCCGCTATAGACGAGCAT
* * ** * * * *
33151585 TAGCGGTGCTTTTTGAAAAATGCCACTATAGATCGAGCATTAGTGGCACTGTTC
66 TAGAGGCGCTTTTCAAAAAACGCCACTATAGATCGACCACTAGCGGCACTGTTC
* * * *
33151639 AAAAAACGCTGCTATAGGTCGACCATTAGCGGTGCTTTTTTAAAA-TCGCCGCTATAGATCGAGC
1 AAAAAACGCAGCTATAAGTCGACCATTAGCGGCGCTTTTTGAAAAGT-GCCGCTATAGA-CGAGC
* * *
33151703 ATTATAGGCGCTTTTCAAAAAACGCCGCTATAGGTCGACCACTAGCGGC
64 ATTAGAGGCGCTTTTCAAAAAACGCCACTATAGATCGACCACTAGCGGC
33151752 GCTTTTGAAA
Statistics
Matches: 93, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
118 1 0.01
119 49 0.53
120 43 0.46
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.26
Consensus pattern (119 bp):
AAAAAACGCAGCTATAAGTCGACCATTAGCGGCGCTTTTTGAAAAGTGCCGCTATAGACGAGCAT
TAGAGGCGCTTTTCAAAAAACGCCACTATAGATCGACCACTAGCGGCACTGTTC
Found at i:33152640 original size:4 final size:4
Alignment explanation
Indices: 33152631--33152659 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
33152621 AAAAACATTG
33152631 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
33152660 AGTAACAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:33153189 original size:21 final size:22
Alignment explanation
Indices: 33153165--33153208 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
33153155 GCGCCTTTTT
33153165 ATCCCTAA-ATTTCCCCCTAAA
1 ATCCCTAATATTTCCCCCTAAA
*
33153186 ATCCCTAATTTTTCCCCCTAAA
1 ATCCCTAATATTTCCCCCTAAA
33153208 A
1 A
33153209 ATAATCACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (22 bp):
ATCCCTAATATTTCCCCCTAAA
Found at i:33154247 original size:22 final size:21
Alignment explanation
Indices: 33154220--33154261 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33154210 GTGTTCACTG
*
33154220 TTATAATATGTTCATTATGCAC
1 TTATAA-ATGTTCATAATGCAC
*
33154242 TTATAAGTGTTCATAATGCA
1 TTATAAATGTTCATAATGCA
33154262 AATTTGAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (21 bp):
TTATAAATGTTCATAATGCAC
Found at i:33162562 original size:43 final size:41
Alignment explanation
Indices: 33162515--33162656 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 41
33162505 GAACGGTACT
* **
33162515 TTTAGCGGCGTTTGTGATAAAAGTACCGCTAAAGATCATGTTC
1 TTTAGCAGCGTTT-TGATAAAAGCGCCGCTAAAG-TCATGTTC
*
33162558 TTTAGCAGCGTTTCTGATAAAAGCGCTGCTAAAGGTCATGTTC
1 TTTAGCAGCGTTT-TGATAAAAGCGCCGCTAAA-GTCATGTTC
* * * *
33162601 TTTAGTAGCGTTTTTATAAAAGCGCCGTTACAAGTCATGCTC
1 TTTAGCAGCGTTTTGATAAAAGCGCCGCTA-AAGTCATGTTC
* *
33162643 TATAGCGGCGTTTT
1 TTTAGCAGCGTTTT
33162657 TTCACATAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 33 0.39
43 50 0.60
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTAGCAGCGTTTTGATAAAAGCGCCGCTAAAGTCATGTTC
Found at i:33164139 original size:37 final size:37
Alignment explanation
Indices: 33164089--33164167 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33164079 TTATTACCAA
* * *
33164089 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
33164126 GTCTTACCGGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
33164163 GTCTT
1 GTCTT
33164168 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:33164396 original size:47 final size:47
Alignment explanation
Indices: 33164285--33164601 Score: 580
Period size: 47 Copynumber: 6.7 Consensus size: 47
33164275 GCCCTTCGGG
*
33164285 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
33164335 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
33164382 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33164429 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
33164476 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33164523 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33164570 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
33164602 ATACTATCAT
Statistics
Matches: 262, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 224 0.85
49 34 0.13
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:33164541 original size:25 final size:25
Alignment explanation
Indices: 33164369--33164447 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
33164359 ATTAGGCCTT
33164369 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
33164394 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
33164416 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
33164441 ATCACAT
1 ATCACAT
33164448 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:33168226 original size:80 final size:80
Alignment explanation
Indices: 33168095--33168450 Score: 369
Period size: 80 Copynumber: 4.5 Consensus size: 80
33168085 CGAATACACG
* * * * * * * * * * *
33168095 TCACCAGCATGATTACTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTTGGGG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
* * *
33168160 TTTAGCACAGATATA
66 CTTAGCCCGGATATA
* * *
33168175 TCACTAGCACGAATGCTTTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
33168240 CTTAGCCCGGATATA
66 CTTAGCCCGGATATA
*
33168255 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
*
33168320 CTTAGCCCGGATACA
66 CTTAGCCCGGATATA
* * ** * * *
33168335 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-GG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGG
* *
33168398 ATCTTAGTCCGGATATGG
65 A-CTTAGCCCGGATAT-A
* * *
33168416 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGAACTTAGCCCGGA
33168451 CATCATTTGA
Statistics
Matches: 236, Mismatches: 36, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
79 3 0.01
80 209 0.89
81 19 0.08
82 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATATA
Found at i:33168327 original size:120 final size:119
Alignment explanation
Indices: 33168114--33168450 Score: 372
Period size: 120 Copynumber: 2.8 Consensus size: 119
33168104 TGATTACTCT
* * * * * *** * * *
33168114 TCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACAGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
* *
33168179 TAGCACGAATGCTTTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
66 TAGCA-GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCC
*
33168234 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
* * *
33168299 TAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCT
66 TAGCA-GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCC
* * * * * * **
33168354 TCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTC
1 TCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA-CATC
* *
33168418 ACTTAGCACAAAGC-CTTCGGGACTTAGCCCGGA
64 AC-TAGCAGAATGCTCTTCGGGACTTAGCCCGGA
33168451 CATCATTTGA
Statistics
Matches: 185, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
120 160 0.86
121 20 0.11
122 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
TAGCAGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCC
Found at i:33168397 original size:40 final size:40
Alignment explanation
Indices: 33168095--33168371 Score: 347
Period size: 40 Copynumber: 6.9 Consensus size: 40
33168085 CGAATACACG
* * * * * *
33168095 TCACCAGCATGATTACTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * * *
33168135 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACAGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
33168175 TCACTAGCACGAATGCTTTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
33168215 TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
33168255 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
33168295 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
33168335 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
33168372 TTAGTAACTC
Statistics
Matches: 206, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 206 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:33168404 original size:40 final size:40
Alignment explanation
Indices: 33168179--33168450 Score: 177
Period size: 40 Copynumber: 6.8 Consensus size: 40
33168169 GATATATCAC
* * * *
33168179 TAGCACGAATGCTTTTCGGAACTTAGCCCGGATACA-TCAC-
1 TAGCAC-AATGC-CTTCGGGACTTAGCCCGGATATAGTAACT
* *
33168219 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA-TCAC-
1 TAGCAC-AATGC-CTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
33168259 TAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA-TCAC-
1 TAGCA-CAATGC-CTTCGGGACTTAGCCCGGATATAGTAACT
* * **
33168299 TAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA-TCGC-
1 TAGCA-CAATGC-CTTCGGGACTTAGCCCGGATATAGTAACT
* *
33168339 TAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-
1 TAGCA-CAATGC-CTTCGGGACTTAGCCCGGATATAGTAACT
* * * *
33168380 TCGCACCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACT
1 TAGCA-CAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACT
*
33168421 TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TAGCACAATGCCTTCGGGACTTAGCCCGGA
33168451 CATCATTTGA
Statistics
Matches: 203, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.01
40 182 0.90
41 18 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TAGCACAATGCCTTCGGGACTTAGCCCGGATATAGTAACT
Found at i:33168807 original size:29 final size:29
Alignment explanation
Indices: 33168773--33168845 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
33168763 TAATCAACCA
*
33168773 CGCACACTTAGTGCCATGTACTTT-AA-AC
1 CGCACACTTAGTGCCATGCA-TTTCAAGAC
*
33168801 TCGCACACTTAGT-CCATGCATTTCAAGGC
1 -CGCACACTTAGTGCCATGCATTTCAAGAC
33168830 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
33168846 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 3 0.08
28 20 0.51
29 16 0.41
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGAC
Found at i:33168891 original size:43 final size:43
Alignment explanation
Indices: 33168829--33168972 Score: 279
Period size: 43 Copynumber: 3.3 Consensus size: 43
33168819 CATTTCAAGG
33168829 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
*
33168872 CCGCACACTTAGTGGCAATCTCACAACCGTGAACACTTATTGC
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
33168915 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
33168958 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
33168973 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
Found at i:33170915 original size:37 final size:37
Alignment explanation
Indices: 33170838--33170916 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
33170828 TTATTACGAA
* * * *
33170838 GTCTTACCCGGACATAATCTCCACACGAACTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAACTCATCAG
* *
33170875 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAACTCATCAG
33170912 GTCTT
1 GTCTT
33170917 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAACTCATCAG
Found at i:33171194 original size:47 final size:47
Alignment explanation
Indices: 33171034--33171305 Score: 472
Period size: 47 Copynumber: 5.7 Consensus size: 47
33171024 GCCCTTCGGG
*
33171034 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
33171084 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
33171133 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33171180 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33171227 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33171274 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
33171306 ATACTATCAT
Statistics
Matches: 219, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
47 133 0.61
49 82 0.37
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:33173887 original size:37 final size:37
Alignment explanation
Indices: 33173837--33173915 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
33173827 TTATTACGAA
* *
33173837 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
33173874 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
33173911 GTCTT
1 GTCTT
33173916 TAGACCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:33174112 original size:47 final size:47
Alignment explanation
Indices: 33174034--33174287 Score: 391
Period size: 47 Copynumber: 5.4 Consensus size: 47
33174024 CCCTTCGGGA
* * * * * * *
33174034 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33174081 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33174128 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33174175 CTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33174222 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33174269 CTTATCACATATATACACT
1 CTTATCACATATATACACT
33174288 GTCTTGGCTG
Statistics
Matches: 190, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 190 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33177884 original size:40 final size:40
Alignment explanation
Indices: 33177827--33178009 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
33177817 CCAGCATGAT
* *
33177827 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
33177867 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
33177907 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
33177948 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
33177988 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
33178010 CATCATTCGA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 98 0.81
41 20 0.17
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:33178361 original size:29 final size:29
Alignment explanation
Indices: 33178327--33178399 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
33178317 AATCAACCAT
* *
33178327 GCACACTTAGTGCCATGTACTTT-AAACTC
1 GCACACTTAGTGCCATGCA-TTTCAAACCC
*
33178356 GCACACTTAGTGCCATGCATTTCAAGCCC
1 GCACACTTAGTGCCATGCATTTCAAACCC
33178385 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
33178400 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCATTTCAAACCC
Found at i:33178442 original size:43 final size:43
Alignment explanation
Indices: 33178381--33178483 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
33178371 TGCATTTCAA
33178381 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33178424 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33178467 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
33178484 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:33180397 original size:37 final size:37
Alignment explanation
Indices: 33180347--33180425 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
33180337 TTATTACGAA
* * *
33180347 GTCTTACCCGGACATAA-TCTCCACATGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
33180384 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
33180421 GTCTT
1 GTCTT
33180426 TAGACCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:33180622 original size:47 final size:47
Alignment explanation
Indices: 33180544--33181353 Score: 1312
Period size: 47 Copynumber: 17.4 Consensus size: 47
33180534 CCCTTCGGGA
* * * * * * *
33180544 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33180591 CCTGTCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33180638 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33180685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33180732 CTTATCACACACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33180779 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33180826 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33180873 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33180920 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33180967 GTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33181014 CTTATCACACATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33181061 CTTATCACATATATACACTTTCACATTCATCACATCGG-C--T----
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33181101 -TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33181147 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33181194 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33181241 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33181288 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33181335 CTTATCACATATATACACT
1 CTTATCACATATATACACT
33181354 GTCTTGGCTG
Statistics
Matches: 712, Mismatches: 43, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
39 36 0.05
42 1 0.00
44 1 0.00
46 1 0.00
47 673 0.95
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33184234 original size:22 final size:22
Alignment explanation
Indices: 33184206--33184251 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
33184196 GAGCTTAATT
33184206 GAATTATACAGTCACAAAGAAA
1 GAATTATACAGTCACAAAGAAA
*
33184228 GAATTATACAGTCACAGAGAAA
1 GAATTATACAGTCACAAAGAAA
33184250 GA
1 GA
33184252 GTTACTTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (22 bp):
GAATTATACAGTCACAAAGAAA
Found at i:33184404 original size:19 final size:19
Alignment explanation
Indices: 33184380--33184417 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33184370 CCGAGATTGA
33184380 TTCGATGGGTACTTCTACT
1 TTCGATGGGTACTTCTACT
33184399 TTCGATGGGTACTTCTACT
1 TTCGATGGGTACTTCTACT
33184418 CCAAGAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGATGGGTACTTCTACT
Found at i:33198292 original size:411 final size:410
Alignment explanation
Indices: 33197521--33198327 Score: 1416
Period size: 411 Copynumber: 2.0 Consensus size: 410
33197511 ACATGGTAAC
*
33197521 AGAAAAAGATTACTTGCTATTGTGTTTGCTTTTGACAAGTTTCGATCTTATCTTGTAGGTACCAA
1 AGAAAAAGATTACTTGCTATTGTGTTTGCTTTAGACAAGTTTCGATCTTATCTTGTAGGTACCAA
* *
33197586 AGTGACTGTTTATACGGACCAGTCGACAATTAAGTATTTACTTGCCAAGAAAGACGCTAAGCCGG
66 AGTGACTGTTTATACAGACCACTCGACAATTAAGTATTTACTTGCCAAGAAAGACGCTAAGCCGG
*
33197651 GACTGATGTGATGGGTACTTCTACTTAAAGAGTTCGATCTAGAAATTCAAGATCGAAAGGGAGTG
131 GACTGATCTGATGGGTACTTCTACTTAAAGAGTTCGATCTAGAAATTCAAGATCGAAAGGGAGTG
*
33197716 GAAAACCAAGTAGCAGACCACTTGTCCAGATTGGAGCCATAAGAAGGGAGCTCTCCTCTTATACC
196 GAAAACCAAGTAGCAGACCACTTGTCCAGATTGGAGCCATAAGAAGGGAACTCTCCTCTTATACC
*
33197781 AATTCGAGAGACGTTTCCAGATGAACACATACTGAAGTTAAATCATGTCGATAATACCCCTTAGT
261 AATTCGAGAGACGTTTCCAGATGAACACATACTGAAGGTAAATCATGTCGATAATACCCCTTAGT
** ** * *
33197846 TTGCTGATATTGCTTGCTTTTTAGCTTGTGGTTTGATGTTGATTGATAAGATGCATTATCAAAAG
326 TTGCTGATATTGCTAACTTTTTAGCTTGTGGTTTGATGCCGATTGATAAGACGCATCATCAAAAG
33197911 AAAAAGAGTTACACGGTCAT
391 AAAAAGAGTTACACGGTCAT
* * *
33197931 AGAAAAAGAGTTACTTGCTATTGTGTTTTCTTTAGACAAGTTTCTATCTTATCTTTTAGGTACCA
1 AGAAAAAGA-TTACTTGCTATTGTGTTTGCTTTAGACAAGTTTCGATCTTATCTTGTAGGTACCA
*
33197996 AAGTGACTGTTTATACAGACCACTCGACAATTAAGTATTTACTTGCCAAGAAAGACTCTAAGCCG
65 AAGTGACTGTTTATACAGACCACTCGACAATTAAGTATTTACTTGCCAAGAAAGACGCTAAGCCG
*
33198061 GGACTGATCTGATGGGTACTTCTACTTAAAGAGTTCGATCTAGAAATTCAAGATTGAAAGGGAGT
130 GGACTGATCTGATGGGTACTTCTACTTAAAGAGTTCGATCTAGAAATTCAAGATCGAAAGGGAGT
*
33198126 GGAAAACCAAGTAGCAGACCACTTGTTCAGATTGGAGCCATAAGAAGGGAACTCTCCTCTTATAC
195 GGAAAACCAAGTAGCAGACCACTTGTCCAGATTGGAGCCATAAGAAGGGAACTCTCCTCTTATAC
*
33198191 CAATTCGAGAGACGTTTCCAGATGAACACATACTGAAGGTAAATCATGTCGATAATACCCCTTGG
260 CAATTCGAGAGACGTTTCCAGATGAACACATACTGAAGGTAAATCATGTCGATAATACCCCTTAG
* *
33198256 TTTGCTTATATTGCTAACTTTTTAGCTTGTGGTTTGATGCCGATTGATAAGACGTATCATCAAAA
325 TTTGCTGATATTGCTAACTTTTTAGCTTGTGGTTTGATGCCGATTGATAAGACGCATCATCAAAA
33198321 GAAAAAG
390 GAAAAAG
33198328 TTTCTTTACG
Statistics
Matches: 375, Mismatches: 21, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
410 9 0.02
411 366 0.98
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (410 bp):
AGAAAAAGATTACTTGCTATTGTGTTTGCTTTAGACAAGTTTCGATCTTATCTTGTAGGTACCAA
AGTGACTGTTTATACAGACCACTCGACAATTAAGTATTTACTTGCCAAGAAAGACGCTAAGCCGG
GACTGATCTGATGGGTACTTCTACTTAAAGAGTTCGATCTAGAAATTCAAGATCGAAAGGGAGTG
GAAAACCAAGTAGCAGACCACTTGTCCAGATTGGAGCCATAAGAAGGGAACTCTCCTCTTATACC
AATTCGAGAGACGTTTCCAGATGAACACATACTGAAGGTAAATCATGTCGATAATACCCCTTAGT
TTGCTGATATTGCTAACTTTTTAGCTTGTGGTTTGATGCCGATTGATAAGACGCATCATCAAAAG
AAAAAGAGTTACACGGTCAT
Found at i:33200855 original size:7 final size:7
Alignment explanation
Indices: 33200845--33200883 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
33200835 ATTTTTTCAA
33200845 TCATCCC
1 TCATCCC
33200852 TCATCCC
1 TCATCCC
33200859 TCATCCC
1 TCATCCC
33200866 TCATCCC
1 TCATCCC
*
33200873 ATCATCTC
1 -TCATCCC
33200881 TCA
1 TCA
33200884 CTCATTCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:33200887 original size:19 final size:19
Alignment explanation
Indices: 33200865--33200902 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33200855 TCCCTCATCC
33200865 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
33200884 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
33200903 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:33214084 original size:27 final size:28
Alignment explanation
Indices: 33214000--33214097 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
33213990 CATGAGATTG
* * *
33214000 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
*
33214029 GCACTAAGTGTACGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
33214057 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
33214084 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33214098 GACTTAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 24 0.39
28 20 0.32
29 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:33214111 original size:29 final size:27
Alignment explanation
Indices: 33214028--33214111 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
33214018 TAAATTGTTC
* * *
33214028 AGCACTAAGTGTACGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
33214056 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
33214083 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
33214112 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.47
28 21 0.43
29 5 0.10
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:33218904 original size:48 final size:48
Alignment explanation
Indices: 33218822--33219015 Score: 239
Period size: 48 Copynumber: 4.0 Consensus size: 48
33218812 TATGCGTACT
*
33218822 GATAATCTGTTATGACACAAGGGTGG-ATCAGACTGTGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCA-CGGACTGTGTGCAGGCCACC
* *
33218870 GATATTCTGTTTTGACACAAGGGTGGCACGGACTGTGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCACC
* * ** *
33218918 GATAA-CTTGTTAAGATACAAGGGTGGCACGGACTACGTGGAGGCCACC
1 GATAATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCACC
* * * * *
33218966 GAGAATCTGTTATTACACAAAGGTGGTATGGACTGTGTGCAGGCCACC
1 GATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCACC
33219014 GA
1 GA
33219016 GAAATATATT
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 120 0.98
49 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (48 bp):
GATAATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCACC
Found at i:33223838 original size:40 final size:40
Alignment explanation
Indices: 33223755--33224057 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
33223745 TTGAATGCTG
* * * * * *
33223755 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
33223795 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
33223835 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
33223875 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
33223915 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
33223955 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33223995 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33224034 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33224058 TGAACGAGGA
Statistics
Matches: 239, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
39 35 0.15
40 196 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:33231738 original size:40 final size:40
Alignment explanation
Indices: 33231655--33231997 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
33231645 TTGAATGCTG
* * * * * *
33231655 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
33231695 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
33231735 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
33231775 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
33231815 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
33231855 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
33231895 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33231935 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33231974 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33231998 TGAACGAGGA
Statistics
Matches: 281, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.12
40 238 0.85
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:33244103 original size:26 final size:25
Alignment explanation
Indices: 33244063--33244112 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
33244053 TTCTTTATCC
33244063 TTTCATTCACATTCCACATTCCTTTG
1 TTTCATTCACATTCC-CATTCCTTTG
*
33244089 TTTCATTC-CATTTCCCTTTCCTTT
1 TTTCATTCACA-TTCCCATTCCTTT
33244113 TTCCCCACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.14, C:0.32, G:0.02, T:0.52
Consensus pattern (25 bp):
TTTCATTCACATTCCCATTCCTTTG
Found at i:33246746 original size:51 final size:51
Alignment explanation
Indices: 33246670--33246772 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
33246660 GACTTCCGTT
33246670 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
1 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
33246721 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
1 ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
33246772 A
1 A
33246773 GGTTGATAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (51 bp):
ACCACTAATATTTTCTACCTTTCTTTGCATGAGGCAAGGCTTTATGTCTAG
Found at i:33252372 original size:24 final size:23
Alignment explanation
Indices: 33252331--33252375 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
33252321 CCTACCCAAG
* *
33252331 CTCACCACCTTTTGTCTCCATCA
1 CTCACCACCTTATCTCTCCATCA
33252354 CTCACCTACCTTATCTCTCCAT
1 CTCACC-ACCTTATCTCTCCAT
33252376 GTAGGAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.18, C:0.44, G:0.02, T:0.36
Consensus pattern (23 bp):
CTCACCACCTTATCTCTCCATCA
Found at i:33268605 original size:37 final size:37
Alignment explanation
Indices: 33268544--33268622 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
33268534 TTATTACGAA
* * * *
33268544 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
33268581 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
33268618 GTCTT
1 GTCTT
33268623 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:33268912 original size:47 final size:47
Alignment explanation
Indices: 33268740--33269032 Score: 453
Period size: 47 Copynumber: 6.2 Consensus size: 47
33268730 CCCTTCGGGA
* * * * * *
33268740 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33268787 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33268833 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33268882 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33268929 CCTATTCACATATATACACTTTCACATTCATCACATCGACCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33268977 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33269024 CTTATCACA
1 CTTATCACA
33269033 ATTTAGAATT
Statistics
Matches: 226, Mismatches: 16, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
46 38 0.17
47 98 0.43
48 44 0.19
49 46 0.20
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33268944 original size:95 final size:94
Alignment explanation
Indices: 33268740--33269032 Score: 453
Period size: 95 Copynumber: 3.1 Consensus size: 94
33268730 CCCTTCGGGA
* * * * * * *
33268740 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCC-TGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
33268804 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
33268833 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
33268898 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33268929 CCTATTCACATATATACACTTTCACATTCATCACATCGACCATTAAGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
33268994 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
33269024 CTTATCACA
1 CTTATCACA
33269033 ATTTAGAATT
Statistics
Matches: 184, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
93 8 0.04
94 5 0.03
95 121 0.66
96 46 0.25
97 4 0.02
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:33269002 original size:142 final size:141
Alignment explanation
Indices: 33268740--33269032 Score: 480
Period size: 142 Copynumber: 2.1 Consensus size: 141
33268730 CCCTTCGGGA
* * * *
33268740 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCTGTCACATATATACACT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCTGTCACATATATACACT
*
33268805 TTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCACAT
66 TTCACATTCATCACATCGACCATTAAGCCTTATCACA-ATATATACACTTTCACATTCATCACAT
33268870 CGGCCATTAGGC
130 CGGCCATTAGGC
* * *
33268882 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGG-CCT-GTCACATATATACA
33268947 CTTTCACATTCATCACATCGACCATTAAGCCTTATCAC-ATATATACACTTTCACATTCATCACA
64 CTTTCACATTCATCACATCGACCATTAAGCCTTATCACAATATATACACTTTCACATTCATCACA
33269011 TCGGCCATTAGGC
129 TCGGCCATTAGGC
33269024 CTTATCACA
1 CTTATCACA
33269033 ATTTAGAATT
Statistics
Matches: 141, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
142 88 0.62
143 3 0.02
144 50 0.35
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCTGTCACATATATACACT
TTCACATTCATCACATCGACCATTAAGCCTTATCACAATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:33272501 original size:40 final size:41
Alignment explanation
Indices: 33272387--33272598 Score: 149
Period size: 40 Copynumber: 5.3 Consensus size: 41
33272377 CTTCGGGACC
* * *
33272387 TAGCCCAGATATA-ACACCAGCACGAA-TGCTCTTCGGAA-CT
1 TAGCCCGGATATATA-ACTAGCACCAATTGC-CTTCGGAATCT
* ** * *
33272427 TAGTCCGGATACCTCACTAGCACGAA-TGCTCTTCGGAAT-T
1 TAGCCCGGATATATAACTAGCACCAATTGC-CTTCGGAATCT
* * *
33272467 TAGCCCGGATTTAGTAACTCGCACCAA-TGCCTTC-GAGTCT
1 TAGCCCGGATATA-TAACTAGCACCAATTGCCTTCGGAATCT
* *
33272507 TAGCCCGGATATATCAACTTGCA-CAATTGCCTTCGG-GTCT
1 TAGCCCGGATATAT-AACTAGCACCAATTGCCTTCGGAATCT
* * *
33272547 TAGCCCGGATATAATCACTAGC-TCAATTGCCTTCGGGA-CT
1 TAGCCCGGATAT-ATAACTAGCACCAATTGCCTTCGGAATCT
33272587 TAGCCCGGATAT
1 TAGCCCGGATAT
33272599 CATTCAAATG
Statistics
Matches: 143, Mismatches: 19, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
39 7 0.05
40 120 0.84
41 16 0.11
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (41 bp):
TAGCCCGGATATATAACTAGCACCAATTGCCTTCGGAATCT
Found at i:33272924 original size:29 final size:29
Alignment explanation
Indices: 33272890--33272963 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
33272880 TAATCCACCA
* *
33272890 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACC
*
33272919 CGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAACC
33272948 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
33272964 ATCTCACGAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.07
29 38 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACC
Found at i:33273006 original size:43 final size:43
Alignment explanation
Indices: 33272945--33273047 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
33272935 TGCATTTCAA
* *
33272945 GCCCGCACACTTAGTGCCAATCTCACGACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
33272988 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33273031 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
33273048 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:33274962 original size:37 final size:37
Alignment explanation
Indices: 33274912--33274990 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33274902 TTATTACGAA
* * *
33274912 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
33274949 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
33274986 GTCTT
1 GTCTT
33274991 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:33275186 original size:47 final size:47
Alignment explanation
Indices: 33275110--33275408 Score: 400
Period size: 47 Copynumber: 6.1 Consensus size: 47
33275100 CTTCGGGACT
* * * * * *
33275110 TATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
33275157 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
33275204 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG-C----C-C
33275259 ATATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
33275307 TATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCT
1 TA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
33275355 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
33275402 TATCACA
1 TATCACA
33275409 ATTTAGAATT
Statistics
Matches: 227, Mismatches: 15, Indels: 20
0.87 0.06 0.08
Matches are distributed among these distances:
47 96 0.42
48 46 0.20
49 38 0.17
50 1 0.00
53 1 0.00
54 39 0.17
56 6 0.03
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:33304079 original size:30 final size:30
Alignment explanation
Indices: 33304022--33304083 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
33304012 GGTTTTTGAA
* *
33304022 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
33304052 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
33304082 AA
1 AA
33304084 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:33310514 original size:21 final size:20
Alignment explanation
Indices: 33310485--33310530 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
33310475 CGAAATGCAA
33310485 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
33310506 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
33310526 T-AACC
1 TCAACC
33310531 ATTCCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:33316878 original size:103 final size:103
Alignment explanation
Indices: 33316641--33316996 Score: 579
Period size: 103 Copynumber: 3.5 Consensus size: 103
33316631 TGGATTCCGC
*
33316641 ACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
* * *
33316706 GCAACCCCC-TTCACATTTCAGATGCGGTGGAATCAGT
66 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
* * ** *
33316743 ACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACTTA
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
33316808 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
66 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
33316846 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
* *
33316911 GCAACCCCCTTTCACATTTAAAATATGGTGGAATCAGC
66 GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
* * *
33316949 ACTTAGAAACCACCAATGAATCGGAGAATCAACACACAACAACCCCTT
1 ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTT
33316997 TATATGCAAT
Statistics
Matches: 236, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
102 70 0.30
103 166 0.70
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.19
Consensus pattern (103 bp):
ACTTAGCAACCACCAATGAATCGGAGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACTTA
GCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGT
Found at i:33318261 original size:7 final size:7
Alignment explanation
Indices: 33318244--33318296 Score: 97
Period size: 7 Copynumber: 7.4 Consensus size: 7
33318234 CCTTTCTTTC
33318244 TTTCTTTA
1 TTTC-TTA
33318252 TTTCTTA
1 TTTCTTA
33318259 TTTCTTA
1 TTTCTTA
33318266 TTTCTTA
1 TTTCTTA
33318273 TTTCTTA
1 TTTCTTA
33318280 TTTCTTA
1 TTTCTTA
33318287 TTTCTTA
1 TTTCTTA
33318294 TTT
1 TTT
33318297 TCATTAGTTA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 41 0.91
8 4 0.09
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTCTTA
Found at i:33318335 original size:14 final size:14
Alignment explanation
Indices: 33318249--33318356 Score: 56
Period size: 14 Copynumber: 7.3 Consensus size: 14
33318239 CTTTCTTTCT
* *
33318249 TTATTTCTTATTTC
1 TTATTTATTATTTA
* *
33318263 TTATTTCTTATTTC
1 TTATTTATTATTTA
* *
33318277 TTATTTCTTATTTC
1 TTATTTATTATTTA
*
33318291 TTATTTTCATTAGTTATT
1 TTA-TTT-ATTA-TT-TA
*
33318309 TTACTTTGTTTATTTA
1 TTA-TTT-ATTATTTA
* *
33318325 TTGTTTATTATCTA
1 TTATTTATTATTTA
33318339 TTATTTATT-TTTA
1 TTATTTATTATTTA
33318352 GTTAT
1 -TTAT
33318357 ATTCCTTTCG
Statistics
Matches: 78, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
13 3 0.04
14 49 0.63
15 6 0.08
16 6 0.08
17 4 0.05
18 10 0.13
ACGTcount: A:0.19, C:0.08, G:0.04, T:0.69
Consensus pattern (14 bp):
TTATTTATTATTTA
Done.