genome.fa.s23.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Length:  67973905

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   

This is table  122  of  228  ( 27298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35971857--35971930	29	2.6	29	89	4	105	25	16	32	25	1.96
35972241--35972463	40	5.6	40	81	2	227	24	23	27	23	2.00
35975059--35975137	25	3.3	25	61	10	65	32	5	29	32	1.79
35975046--35975268	47	4.7	47	96	1	401	30	9	30	29	1.89
35975386--35975464	37	2.1	37	90	0	122	24	18	31	25	1.98
35979312--35979367	7	7.5	8	72	20	50	44	0	25	30	1.54
35982812--35982986	96	1.8	96	85	4	246	32	12	20	35	1.89
35991606--35991663	30	1.9	30	89	6	91	27	18	20	32	1.97
35993875--35993938	32	2.0	32	93	0	110	35	17	7	39	1.78
35997466--35997524	29	2.0	31	83	6	77	61	3	8	27	1.41
35997627--35998168	180	3.0	180	98	0	1032	40	16	11	31	1.85
35999789--35999847	20	2.9	19	77	10	55	52	8	1	37	1.42
35999830--35999884	18	3.0	19	76	7	51	50	3	0	45	1.19
36007203--36007360	35	4.5	35	88	0	217	23	22	27	26	1.99
36012733--36012860	29	4.4	29	92	2	195	36	10	26	25	1.89
36012848--36013018	29	5.9	28	73	8	110	37	13	26	22	1.91
36012842--36013005	58	2.8	57	74	11	145	37	12	27	22	1.90
36012840--36013003	87	1.9	87	83	5	215	37	12	26	23	1.91
36016121--36016166	21	2.2	21	84	0	56	15	36	23	23	1.93
36016979--36017051	13	5.5	13	76	9	76	34	19	1	45	1.59
36016981--36017051	27	2.7	27	78	10	74	35	19	1	43	1.60
36021865--36022126	138	1.9	138	79	6	298	32	25	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36031031--36031066	19	1.9	18	88	5	54	58	0	11	30	1.33
36045014--36045143	58	2.2	56	82	5	143	23	28	11	36	1.89
36051417--36051454	11	3.5	11	96	0	67	34	15	7	42	1.76
36051963--36051997	17	2.0	17	88	5	52	20	5	0	74	1.02
36053090--36053125	15	2.5	14	86	8	54	5	13	0	80	0.88
36055317--36055483	87	1.9	86	84	3	219	37	25	12	23	1.90
36075412--36075439	14	2.0	14	100	0	56	35	7	0	57	1.26
36075452--36075482	13	2.4	13	94	0	53	51	0	3	45	1.17
36081394--36081451	28	2.0	28	80	9	64	18	12	12	56	1.65
36082138--36082162	12	2.1	12	100	0	50	48	0	8	44	1.32
36085897--36086004	15	7.2	15	69	12	87	43	7	23	25	1.79
36085890--36086004	30	3.8	30	97	0	203	44	6	23	25	1.78
36088788--36088921	52	2.7	49	84	10	182	42	7	0	49	1.36
36088819--36088901	26	3.2	25	67	16	62	38	7	1	53	1.37
36088870--36089043	94	1.9	94	93	0	303	40	8	4	47	1.52
36092550--36092666	50	2.3	52	81	7	141	40	11	13	34	1.82
36097061--36097137	29	2.6	29	81	2	91	24	14	31	29	1.94
36097090--36097417	174	1.9	174	96	0	611	29	14	25	31	1.94
36103873--36103925	27	2.0	27	82	10	65	43	16	1	37	1.60
36107787--36107885	30	3.3	30	78	0	90	18	31	27	23	1.97
36110372--36110413	22	1.9	22	95	0	75	45	0	9	45	1.36
36110394--36110638	69	3.5	69	82	8	282	41	4	17	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36110511--36110657	76	1.9	75	84	4	197	39	6	14	39	1.72
36110812--36110868	29	2.0	29	89	0	87	49	3	10	36	1.55
36112934--36113066	61	2.2	59	84	9	171	37	12	28	21	1.89
36123150--36123399	125	2.0	122	92	2	419	26	12	15	45	1.82
36129127--36129311	101	1.8	102	85	3	266	24	17	26	31	1.97
36129124--36129313	51	3.8	49	80	4	193	23	17	27	31	1.97
36129233--36129313	26	3.2	26	67	28	73	20	14	29	34	1.93
36129537--36129568	16	2.0	16	93	0	55	59	0	15	25	1.36
36132298--36132391	48	2.0	48	85	4	127	25	13	26	34	1.94
36135080--36135111	10	3.4	10	87	12	50	65	0	28	6	1.16
36135220--36135414	51	3.8	52	78	3	200	24	18	27	29	1.98
36135226--36135414	102	1.9	101	86	3	272	24	17	26	30	1.98
36138222--36138261	20	2.1	19	90	4	62	22	0	2	75	0.93
36139200--36139296	48	2.0	48	100	0	194	29	16	16	37	1.91
36146084--36146207	62	2.0	61	88	1	185	36	20	18	24	1.95
36153049--36153158	32	3.4	32	83	0	139	18	39	22	20	1.93
36153977--36154081	52	2.0	52	100	0	210	43	22	7	25	1.80
36154945--36154991	24	1.9	24	83	12	60	31	6	6	55	1.51
36166350--36166546	42	4.7	42	80	6	215	18	17	26	37	1.93
36166350--36166546	86	2.4	84	79	9	222	18	17	26	37	1.93
36167104--36167138	18	1.9	18	88	0	52	5	14	2	77	1.07
36167308--36167404	45	2.1	46	88	5	144	51	1	6	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36167449--36167729	150	1.8	152	91	4	469	43	4	10	41	1.60
36168348--36168392	20	2.2	20	84	7	56	17	6	4	71	1.25
36174870--36174910	21	2.0	21	86	9	59	58	0	19	21	1.39
36175220--36175270	23	2.2	23	82	6	59	15	19	11	52	1.73
36175313--36175351	17	2.2	18	90	4	62	51	5	10	33	1.58
36183600--36183647	21	2.2	21	82	13	62	81	4	8	6	0.98
36186686--36186749	32	2.0	32	90	0	101	37	18	9	34	1.83
36190873--36191704	277	3.0	277	92	0	1333	28	18	20	32	1.96
36197988--36198052	33	2.0	33	87	6	96	27	24	26	21	1.99
36198149--36198228	26	3.1	26	83	1	99	33	21	21	23	1.97
36206675--36206708	17	2.0	18	88	11	54	29	20	5	44	1.75
36213630--36213814	79	2.3	81	82	7	218	25	27	22	24	2.00
36213611--36213814	40	5.1	40	80	8	220	25	27	22	25	2.00
36221483--36221561	37	2.1	37	88	4	115	25	29	18	26	1.98
36221728--36221768	16	2.6	16	96	0	73	34	26	4	34	1.78
36221684--36221815	63	2.1	63	85	0	174	28	31	9	31	1.88
36221747--36222268	47	10.4	47	71	20	330	30	29	7	32	1.85
36221884--36221990	17	6.6	17	69	24	79	34	28	3	32	1.75
36221837--36222036	64	3.1	64	97	0	366	32	28	6	33	1.81
36221790--36222126	111	3.1	111	78	16	414	31	28	7	32	1.84
36221975--36222268	96	3.1	96	93	4	519	30	29	8	32	1.86
36225802--36225904	40	2.5	40	77	10	102	21	27	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36226210--36226288	29	2.7	29	86	5	106	27	32	15	24	1.95
36227716--36228023	47	6.5	47	93	0	463	29	29	8	32	1.87
36227783--36228360	47	13.0	42	83	11	325	30	29	8	32	1.87
36227716--36228367	94	6.7	94	76	15	473	29	29	8	32	1.87
36227716--36228367	141	4.5	141	88	7	944	29	29	8	32	1.87
36227998--36228039	17	2.5	17	96	3	77	38	30	0	30	1.58
36227951--36228086	64	2.1	64	98	1	265	32	30	5	31	1.81
36227904--36228133	111	2.1	111	98	0	444	31	29	6	32	1.84
36227857--36228323	158	3.1	158	86	11	736	30	29	7	32	1.85
36228015--36228367	47	7.5	47	96	1	634	30	29	7	32	1.86
36227716--36228367	205	3.4	196	88	6	945	29	29	8	32	1.87
36234131--36234158	13	2.2	13	100	0	56	46	17	7	28	1.75
36239478--36239502	13	1.9	13	100	0	50	56	4	0	40	1.18
36242431--36242497	27	2.5	27	82	4	82	20	28	14	35	1.93
36242583--36242793	45	4.7	44	81	5	190	27	22	13	36	1.92
36242625--36242793	90	1.9	89	86	3	241	28	22	12	36	1.91
36242625--36242794	45	3.8	44	85	4	207	28	22	12	35	1.91
36246501--36246548	20	2.4	20	86	6	71	35	14	39	10	1.80
36250847--36250906	10	6.3	9	75	21	52	45	3	0	51	1.17
36251846--36251896	25	2.0	25	84	3	66	49	13	0	37	1.43
36253377--36253600	43	5.2	43	85	3	272	30	26	16	25	1.97
36253377--36253607	87	2.7	87	80	5	263	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36254643--36255054	193	2.1	192	80	8	469	42	18	9	29	1.82
36257154--36257247	7	13.1	7	70	12	57	41	37	1	20	1.59
36257155--36257247	21	4.3	22	78	5	91	41	36	1	20	1.59
36257212--36257253	15	2.9	15	89	3	59	45	33	0	21	1.52
36257278--36257329	14	3.7	14	81	0	59	50	28	1	19	1.58
36257377--36257415	19	2.0	20	85	14	55	53	0	2	43	1.14
36257482--36257549	21	3.2	22	78	12	70	35	42	2	19	1.66
36257508--36257546	21	1.9	21	94	5	71	30	46	2	20	1.64
36257907--36258099	41	4.7	41	90	1	273	30	30	19	20	1.97
36257907--36258142	82	2.9	82	84	1	269	28	29	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228