Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 123 of 228
Found at i:36264389 original size:40 final size:40
Alignment explanation
Indices: 36264332--36264828 Score: 451
Period size: 40 Copynumber: 12.4 Consensus size: 40
36264322 AATTATTGTA
* * * *
36264332 TGAATGCACATATGTGCCCCTGTTTGGATTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
36264372 TGAATGCACATACGTGCCCCTATTGGTACTTTGGTACTCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
36264412 TAAATTCACATATGTGCCCCTATTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
36264452 TGAATGCACA-ACATGCCCCTGTTTATACTTCGGTGCCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * * * ** * *
36264491 TGCATGCACATATGTACCCTTATTTGTATTTTAGTACTCA
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
36264531 TGAATTCACATACATGCCCCT-TCTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGT-TTGTACTTCGGTACCCC
* * * * * **
36264571 T-AGATGCACATGCATACCCTTGTTTGTATTTTAGTACCCC
1 TGA-ATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
36264611 TGAATGTACATATGTGCCCCTGTTTGTACTTTGGTACTCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
36264651 TAAATGGACATACGTGCCCCTATTTATACTTCGGTACTCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
36264691 TGAATGCACATATGTGCCGCTGCTTGTACTTCAGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
36264731 TGAGTGCACATATGTGCCCCTGTTTGTGCTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
36264771 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCAC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
36264811 TGAATGCACATGCGTGCC
1 TGAATGCACATACGTGCC
36264829 ATTTTTTATT
Statistics
Matches: 360, Mismatches: 92, Indels: 10
0.78 0.20 0.02
Matches are distributed among these distances:
39 34 0.09
40 324 0.90
41 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:36264828 original size:120 final size:119
Alignment explanation
Indices: 36264332--36264821 Score: 509
Period size: 120 Copynumber: 4.1 Consensus size: 119
36264322 AATTATTGTA
** * * ** * *
36264332 TGAATGCACATATGTGCCCCTGTTTGGATTTTGGTACCCCTGAATGCACATACGTGCCCCTATTG
1 TGAATGCACATACATG-CCCTGTTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTATTT
* ** *
36264397 GTACTTTGGTACTCCTAAATTCACATATGTGCCCCTATTTGTACTTCGATACCCC
65 GTACTTTGGTACTCCTAAATGCACATACATGCCCCTATTTGTACTTCGGTACCCC
* * * * * *
36264452 TGAATGCACA-ACATGCCCCTGTTTATACTTCGGTGCCCCTGCATGCACATATGTACCCTTATTT
1 TGAATGCACATACATG-CCCTGTTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTATTT
* * * * *
36264516 GTATTTTAGTACTCATGAATTCACATACATGCCCCT-TCTTGTACTTCGGTACCCC
65 GTACTTTGGTACTCCTAAATGCACATACATGCCCCTAT-TTGTACTTCGGTACCCC
* * * * * *
36264571 T-AGATGCACATGCATACCCTTGTTTGTATTTTAGTACCCCTGAATGTACATATGTGCCCCTGTT
1 TGA-ATGCACATACATGCCC-TGTTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTATT
* * * *
36264635 TGTACTTTGGTACTCCTAAATGGACATACGTGCCCCTATTTATACTTCGGTACTCC
64 TGTACTTTGGTACTCCTAAATGCACATACATGCCCCTATTTGTACTTCGGTACCCC
** * * * *
36264691 TGAATGCACATATGTGCCGCTGCTTGTACTTCAGTACCCTTGAGTGCACATATGTGCCCCTGTTT
1 TGAATGCACATACATGCC-CTGTTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTATTT
* * * * *
36264756 GTGCTTTGGTACCCCTGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCAC
65 GTACTTTGGTACTCCTAAATGCACATACATGCCCCTATTTGTACTTCGGTACCCC
36264811 TGAATGCACAT
1 TGAATGCACAT
36264822 GCGTGCCATT
Statistics
Matches: 304, Mismatches: 59, Indels: 14
0.81 0.16 0.04
Matches are distributed among these distances:
118 2 0.01
119 99 0.33
120 200 0.66
121 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.34
Consensus pattern (119 bp):
TGAATGCACATACATGCCCTGTTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTATTTG
TACTTTGGTACTCCTAAATGCACATACATGCCCCTATTTGTACTTCGGTACCCC
Found at i:36275109 original size:40 final size:39
Alignment explanation
Indices: 36275011--36275233 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
36275001 TCCTCGTTCA
* * ** * *
36275011 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
36275050 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
36275089 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
36275129 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
36275169 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
36275210 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36275234 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:36275167 original size:80 final size:79
Alignment explanation
Indices: 36275009--36275233 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
36274999 GCTCCTCGTT
* * ** * *
36275009 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
36275074 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
36275088 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
36275153 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
36275168 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
36275231 GGA
63 GGA
36275234 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:36275233 original size:120 final size:119
Alignment explanation
Indices: 36275011--36275233 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
36275001 TCCTCGTTCA
* * *
36275011 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
36275076 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
36275130 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
36275194 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
36275234 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:36288169 original size:40 final size:39
Alignment explanation
Indices: 36288071--36288293 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
36288061 TCCTCGTTCA
* * ** * *
36288071 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
36288110 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
36288149 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
36288189 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
36288229 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
36288270 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36288294 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:36288227 original size:80 final size:79
Alignment explanation
Indices: 36288069--36288293 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
36288059 GCTCCTCGTT
* * ** * *
36288069 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
36288134 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
36288148 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
36288213 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
36288228 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
36288291 GGA
63 GGA
36288294 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:36288293 original size:120 final size:119
Alignment explanation
Indices: 36288071--36288293 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
36288061 TCCTCGTTCA
* * *
36288071 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
36288136 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
36288190 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
36288254 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
36288294 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:36293581 original size:21 final size:21
Alignment explanation
Indices: 36293557--36293600 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
36293547 TCAGATAGGC
36293557 CACATGGTTGTGT-GAGTGGGT
1 CACATGGTTGTGTGGA-TGGGT
36293578 CACATGGTTGTGTGGATGGGT
1 CACATGGTTGTGTGGATGGGT
36293599 CA
1 CA
36293601 AACGATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.16, C:0.11, G:0.41, T:0.32
Consensus pattern (21 bp):
CACATGGTTGTGTGGATGGGT
Found at i:36296172 original size:16 final size:17
Alignment explanation
Indices: 36296148--36296182 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36296138 GGGAGGACAC
36296148 TTAAAAAAAATTCTGCT
1 TTAAAAAAAATTCTGCT
36296165 TTAAAAAAAATTCTGCT
1 TTAAAAAAAATTCTGCT
36296182 T
1 T
36296183 GTTTTTCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (17 bp):
TTAAAAAAAATTCTGCT
Found at i:36299886 original size:17 final size:18
Alignment explanation
Indices: 36299853--36299887 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36299843 CTTGTTGACA
36299853 TAAAACTACTAAATAATT
1 TAAAACTACTAAATAATT
*
36299871 TAAAAC-ACTTAATAATT
1 TAAAACTACTAAATAATT
36299888 ATCACAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAACTACTAAATAATT
Found at i:36303272 original size:28 final size:27
Alignment explanation
Indices: 36303209--36303360 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
36303199 ATATTAAGTC
* *
36303209 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
36303236 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
36303264 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36303291 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36303319 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36303346 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36303361 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36303293 original size:55 final size:55
Alignment explanation
Indices: 36303209--36303385 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
36303199 ATATTAAGTC
* * *
36303209 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
36303264 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
36303319 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
36303375 CGCACACTTAG
1 CGCACACTTAG
36303386 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:36311279 original size:28 final size:27
Alignment explanation
Indices: 36311216--36311367 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
36311206 ATATTAAGTC
* *
36311216 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
36311243 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
36311271 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36311298 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36311326 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36311353 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36311368 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36311300 original size:55 final size:55
Alignment explanation
Indices: 36311216--36311392 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
36311206 ATATTAAGTC
* * *
36311216 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
36311271 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
36311326 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
36311382 CGCACACTTAG
1 CGCACACTTAG
36311393 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:36318170 original size:21 final size:22
Alignment explanation
Indices: 36318146--36318190 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
36318136 AGAAAAAGAG
36318146 AAATACAAAAAAG-AATA-AATC
1 AAAT-CAAAAAAGAAATAGAATC
*
36318167 AAATTAAAAAAGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
36318189 AA
1 AA
36318191 CAATTTGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 8 0.38
22 6 0.29
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.16
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:36321301 original size:41 final size:41
Alignment explanation
Indices: 36321202--36321304 Score: 161
Period size: 41 Copynumber: 2.5 Consensus size: 41
36321192 GGCAATTAGC
* * * *
36321202 CTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCAAGC
1 CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGA
*
36321243 CTGCTAGACGTATAGTCTGAAACATTTCACCGGCATCAAGA
1 CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGA
36321284 CTGCTAGACGTAAAGTCTGAA
1 CTGCTAGACGTAAAGTCTGAA
36321305 TTATCTCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (41 bp):
CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGA
Found at i:36322894 original size:11 final size:11
Alignment explanation
Indices: 36322880--36322913 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
36322870 ATTTTACTTT
*
36322880 TATATTTAATA
1 TATATATAATA
36322891 TATATATAATA
1 TATATATAATA
36322902 TATATAT-ATA
1 TATATATAATA
36322912 TA
1 TA
36322914 ATAGCCATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 5 0.23
11 17 0.77
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TATATATAATA
Found at i:36322906 original size:15 final size:15
Alignment explanation
Indices: 36322888--36322916 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36322878 TTTATATTTA
36322888 ATATATATATAATAT
1 ATATATATATAATAT
36322903 ATATATATATAATA
1 ATATATATATAATA
36322917 GCCATCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATATATAATAT
Found at i:36329166 original size:41 final size:41
Alignment explanation
Indices: 36329064--36329169 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
36329054 ACTGGCAATT
* * *
36329064 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
*
36329105 AGCCTGCTAGACGTATAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
36329146 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
36329170 TTATCTCATT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:36330691 original size:13 final size:13
Alignment explanation
Indices: 36330673--36330697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36330663 GTATTTGAAA
36330673 AGTGAATATTGAT
1 AGTGAATATTGAT
36330686 AGTGAATATTGA
1 AGTGAATATTGA
36330698 ATGGAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (13 bp):
AGTGAATATTGAT
Found at i:36331094 original size:1 final size:1
Alignment explanation
Indices: 36330897--36331084 Score: 376
Period size: 1 Copynumber: 188.0 Consensus size: 1
36330887 CGTCAATTCT
36330897 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36330962 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36331027 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36331085 TATAGAAAAA
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 187 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:36331159 original size:18 final size:17
Alignment explanation
Indices: 36331136--36331185 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 17
36331126 TTCAATTACC
36331136 TATTTTTTTTTTTTGTAT
1 TATTTTTTTTTTTTGT-T
* *
36331154 TATTTTTTTTATTTATT
1 TATTTTTTTTTTTTGTT
* *
36331171 TGTTTTTTGTTTTTG
1 TATTTTTTTTTTTTG
36331186 CCCGATAAGG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.10, C:0.00, G:0.08, T:0.82
Consensus pattern (17 bp):
TATTTTTTTTTTTTGTT
Found at i:36334170 original size:14 final size:16
Alignment explanation
Indices: 36334137--36334174 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
36334127 GCATGAATAA
36334137 ATATTATATGATACTAG
1 ATATTATAT-ATACTAG
36334154 ATATTATAT-TA-TAG
1 ATATTATATATACTAG
36334168 ATATTAT
1 ATATTAT
36334175 GGATGCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.48
15 2 0.10
17 9 0.43
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (16 bp):
ATATTATATATACTAG
Found at i:36350520 original size:20 final size:19
Alignment explanation
Indices: 36350497--36350539 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
36350487 GGATTGAGAA
*
36350497 AATTATTTAATTAAAAAATT
1 AATTAATTAA-TAAAAAATT
*
36350517 AATTAATTAATCAAAAATT
1 AATTAATTAATAAAAAATT
36350536 AATT
1 AATT
36350540 TAATATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTAATTAATAAAAAATT
Found at i:36350542 original size:20 final size:17
Alignment explanation
Indices: 36350495--36350543 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 17
36350485 TTGGATTGAG
36350495 AAAATT-ATTTAATTAA
1 AAAATTAATTTAATTAA
36350511 AAAATTAA-TTAATTAATCA
1 AAAATTAATTTAATT-A--A
36350530 AAAATTAATTTAAT
1 AAAATTAATTTAAT
36350544 ATATAATGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 12 0.43
17 2 0.07
19 9 0.32
20 5 0.18
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAATTAATTTAATTAA
Found at i:36353170 original size:7 final size:7
Alignment explanation
Indices: 36353154--36353204 Score: 66
Period size: 7 Copynumber: 7.3 Consensus size: 7
36353144 ACTTTTTCAA
*
36353154 TCATCAC
1 TCATCCC
36353161 TCATCCC
1 TCATCCC
36353168 TCATCCC
1 TCATCCC
*
36353175 CCATCCC
1 TCATCCC
*
36353182 CCATCCC
1 TCATCCC
*
36353189 CCATCCC
1 TCATCCC
36353196 TCATCCC
1 TCATCCC
36353203 TC
1 TC
36353205 TCATCTCTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.16, C:0.61, G:0.00, T:0.24
Consensus pattern (7 bp):
TCATCCC
Found at i:36353179 original size:14 final size:14
Alignment explanation
Indices: 36353162--36353217 Score: 76
Period size: 14 Copynumber: 3.9 Consensus size: 14
36353152 AATCATCACT
36353162 CATCCCTCATCCCC
1 CATCCCTCATCCCC
*
36353176 CATCCCCCATCCCC
1 CATCCCTCATCCCC
36353190 CATCCCTCATCCCTC
1 CATCCCTCATCCC-C
*
36353205 TCATCTCTCATCC
1 -CATCCCTCATCC
36353218 TTTCTCTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
14 25 0.68
15 1 0.03
16 11 0.30
ACGTcount: A:0.14, C:0.61, G:0.00, T:0.25
Consensus pattern (14 bp):
CATCCCTCATCCCC
Found at i:36363738 original size:21 final size:21
Alignment explanation
Indices: 36363712--36363754 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
36363702 ATACTATGCA
36363712 TATTGCAGTAACTCACCCGAC
1 TATTGCAGTAACTCACCCGAC
36363733 TATTGCAGTAACTCACCCGAC
1 TATTGCAGTAACTCACCCGAC
36363754 T
1 T
36363755 TATACTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.26
Consensus pattern (21 bp):
TATTGCAGTAACTCACCCGAC
Found at i:36364011 original size:43 final size:43
Alignment explanation
Indices: 36363947--36364068 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
36363937 ATATCAAAAC
* * * * *
36363947 AACTATACTGGCATACACAGTGCATCATCAGATATACTGAGGT
1 AACTATACTAGCACACACAGTGCATCATCAAATATACCGAAGT
*
36363990 AACTATACTAGCACACGCAGTGCATCATCAAATATACCGAAGT
1 AACTATACTAGCACACACAGTGCATCATCAAATATACCGAAGT
* * *
36364033 AACTATACTAGCACACACAGCGCACCATCGAATATA
1 AACTATACTAGCACACACAGTGCATCATCAAATATA
36364069 TCGTAGGCAC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.21
Consensus pattern (43 bp):
AACTATACTAGCACACACAGTGCATCATCAAATATACCGAAGT
Found at i:36365485 original size:27 final size:27
Alignment explanation
Indices: 36365453--36365630 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
36365443 ATATTGAGTC
* *
36365453 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
36365480 CACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36365507 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
36365535 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36365562 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36365589 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
36365616 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36365631 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36365613 original size:54 final size:55
Alignment explanation
Indices: 36365453--36365630 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 55
36365443 ATATTGAGTC
* * * * * * *
36365453 CGCACACTCAGTGCTATATAATC-AACTCACACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
36365507 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
36365562 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
36365616 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36365631 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
54 60 0.58
55 44 0.42
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:36373562 original size:27 final size:27
Alignment explanation
Indices: 36373532--36373709 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
36373522 ATATTGAGTC
* * *
36373532 CGCACACTCAGTGCTATATAAACAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36373559 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36373586 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
36373614 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36373641 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36373668 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
36373695 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36373710 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36373671 original size:82 final size:81
Alignment explanation
Indices: 36373558--36373708 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
36373548 TATAAACAAC
* *
36373558 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
36373623 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* **
36373640 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
36373704 AGTGC
65 AGTGC
36373709 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:36375562 original size:43 final size:43
Alignment explanation
Indices: 36375487--36375621 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 43
36375477 GCTTCATTAG
** * * *
36375487 ATATACCCCAGTAACTATACTAGCACACACAGTGCATCATCGA
1 ATATACCAAAGTAACTATACTTGCACATACAGTGCATTATCGA
* *
36375530 ATATACCAAAGTAACTATACTTGAACATACAGTGTATTATC-A
1 ATATACCAAAGTAACTATACTTGCACATACAGTGCATTATCGA
** * * *
36375572 GATATACGGAAGTAATTATA-TTGCCACTTGCAGTGCATTATCGA
1 -ATATACCAAAGTAACTATACTTG-CACATACAGTGCATTATCGA
36375616 ATATAC
1 ATATAC
36375622 TGTAACAGCT
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 4 0.05
43 70 0.93
44 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (43 bp):
ATATACCAAAGTAACTATACTTGCACATACAGTGCATTATCGA
Found at i:36378177 original size:43 final size:43
Alignment explanation
Indices: 36378102--36378372 Score: 224
Period size: 43 Copynumber: 6.3 Consensus size: 43
36378092 GGGATGCTAC
* * * *
36378102 ATATACCAAAGTAACTATACTTGAACATACAATGCATCATCAG
1 ATATACCGAAGTAACTATACTAGCACACACAATGCATCATCAG
* * **
36378145 ATACACCGAAGTAACTATACTGGCACACACAATGCATCATTGG
1 ATATACCGAAGTAACTATACTAGCACACACAATGCATCATCAG
* * * *
36378188 ATATATCGAAGTAACTATACTAGAACATACAATGCATCATCGG
1 ATATACCGAAGTAACTATACTAGCACACACAATGCATCATCAG
* * * * * *
36378231 ATATACCAAAGTAACTATACCACCAGACATAGTGCATCATCAG
1 ATATACCGAAGTAACTATACTAGCACACACAATGCATCATCAG
* * * * * *
36378274 ATATATCGAAGTAACTATACTGGCACAAATAGTTCATCATCAG
1 ATATACCGAAGTAACTATACTAGCACACACAATGCATCATCAG
** * * * *
36378317 ATATATTGATA-TAACTATA-TTGATACATACAGTGCATCATC-G
1 ATATACCGA-AGTAACTATACTAG-CACACACAATGCATCATCAG
36378359 TATATACCGAAGTA
1 -ATATACCGAAGTA
36378373 TAACCTGGAT
Statistics
Matches: 185, Mismatches: 39, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
42 4 0.02
43 180 0.97
44 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (43 bp):
ATATACCGAAGTAACTATACTAGCACACACAATGCATCATCAG
Found at i:36378247 original size:86 final size:86
Alignment explanation
Indices: 36378110--36378294 Score: 262
Period size: 86 Copynumber: 2.2 Consensus size: 86
36378100 ACATATACCA
* * ***
36378110 AAGTAACTATACTTGAACATACAATGCATCATCAGATACACCGAAGTAACTATACTGGCACACAC
1 AAGTAACTATACTAGAACATACAATGCATCATCAGATACACCAAAGTAACTATACCACCACACAC
**
36378175 AATGCATCATTGGATATATCG
66 AATGCATCATCAGATATATCG
* * * *
36378196 AAGTAACTATACTAGAACATACAATGCATCATCGGATATACCAAAGTAACTATACCACCAGACAT
1 AAGTAACTATACTAGAACATACAATGCATCATCAGATACACCAAAGTAACTATACCACCACACAC
*
36378261 AGTGCATCATCAGATATATCG
66 AATGCATCATCAGATATATCG
36378282 AAGTAACTATACT
1 AAGTAACTATACT
36378295 GGCACAAATA
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 87 1.00
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (86 bp):
AAGTAACTATACTAGAACATACAATGCATCATCAGATACACCAAAGTAACTATACCACCACACAC
AATGCATCATCAGATATATCG
Found at i:36378332 original size:129 final size:128
Alignment explanation
Indices: 36378102--36378372 Score: 332
Period size: 129 Copynumber: 2.1 Consensus size: 128
36378092 GGGATGCTAC
* *
36378102 ATATACCAAAGTAACTATACTTGAACATACAATGCATCATCAGATACACCGAAGTAACTATACTG
1 ATATACCAAAGTAACTATAC-TCAACAGACAATGCATCATCAGATACACCGAAGTAACTATACTG
* **
36378167 GCACACACAATGCATCATTGGATATATCGAAGTAACTATACTAGA-ACATACAATGCATCATCGG
65 GCACAAACAATGCATCATCAGATATATCGAAGTAACTATA-TAGATACATACAATGCATCATCGG
* * *
36378231 ATATACCAAAGTAACTATAC-CACCAGACATAGTGCATCATCAGATATATCGAAGTAACTATACT
1 ATATACCAAAGTAACTATACTCAACAGACA-A-TGCATCATCAGATACACCGAAGTAACTATACT
* * * * * *
36378295 GGCACAAATAGTTCATCATCAGATATATTGATA-TAACTATATTGATACATACAGTGCATCATCG
64 GGCACAAACAATGCATCATCAGATATATCGA-AGTAACTATATAGATACATACAATGCATCATCG
*
36378359 T
128 G
*
36378360 ATATACCGAAGTA
1 ATATACCAAAGTA
36378373 TAACCTGGAT
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
127 6 0.05
128 4 0.03
129 111 0.91
130 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (128 bp):
ATATACCAAAGTAACTATACTCAACAGACAATGCATCATCAGATACACCGAAGTAACTATACTGG
CACAAACAATGCATCATCAGATATATCGAAGTAACTATATAGATACATACAATGCATCATCGG
Found at i:36378335 original size:86 final size:86
Alignment explanation
Indices: 36378110--36378321 Score: 253
Period size: 86 Copynumber: 2.5 Consensus size: 86
36378100 ACATATACCA
* * * * *** * *
36378110 AAGTAACTATACTTGAACATACAATGCATCATCAGATACACCGAAGTAACTATACTGGCACACAC
1 AAGTAACTATACTAGAACAAACAATGCATCATCAGATATACCAAAGTAACTATACCACCAGACAT
* **
36378175 AATGCATCATTGGATATATCG
66 AGTGCATCATCAGATATATCG
* *
36378196 AAGTAACTATACTAGAACATACAATGCATCATCGGATATACCAAAGTAACTATACCACCAGACAT
1 AAGTAACTATACTAGAACAAACAATGCATCATCAGATATACCAAAGTAACTATACCACCAGACAT
36378261 AGTGCATCATCAGATATATCG
66 AGTGCATCATCAGATATATCG
* * * * *
36378282 AAGTAACTATACTGGCACAAATAGTTCATCATCAGATATA
1 AAGTAACTATACTAGAACAAACAATGCATCATCAGATATA
36378322 TTGATATAAC
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
86 107 1.00
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (86 bp):
AAGTAACTATACTAGAACAAACAATGCATCATCAGATATACCAAAGTAACTATACCACCAGACAT
AGTGCATCATCAGATATATCG
Found at i:36379500 original size:33 final size:33
Alignment explanation
Indices: 36379463--36379528 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
36379453 TCGCGAGGTG
36379463 TGCATTATAACTAACCGCCTTCAGACATACTAA
1 TGCATTATAACTAACCGCCTTCAGACATACTAA
36379496 TGCATTATAACTAACCGCCTTCAGACATACTAA
1 TGCATTATAACTAACCGCCTTCAGACATACTAA
36379529 CGTCCCGAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.27
Consensus pattern (33 bp):
TGCATTATAACTAACCGCCTTCAGACATACTAA
Found at i:36379529 original size:19 final size:19
Alignment explanation
Indices: 36379472--36379529 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
36379462 GTGCATTATA
36379472 ACTAACCGCCTTCAGACAT
1 ACTAACCGCCTTCAGACAT
* * *
36379491 ACTAA-TGCATT---ATA-
1 ACTAACCGCCTTCAGACAT
36379505 ACTAACCGCCTTCAGACAT
1 ACTAACCGCCTTCAGACAT
36379524 ACTAAC
1 ACTAAC
36379530 GTCCCGAGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 10
0.64 0.14 0.23
Matches are distributed among these distances:
14 5 0.18
15 6 0.21
18 6 0.21
19 11 0.39
ACGTcount: A:0.36, C:0.31, G:0.09, T:0.24
Consensus pattern (19 bp):
ACTAACCGCCTTCAGACAT
Found at i:36383032 original size:17 final size:17
Alignment explanation
Indices: 36383010--36383042 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36383000 CTTTTTAACA
36383010 TTTGATTGATCTTTCTG
1 TTTGATTGATCTTTCTG
36383027 TTTGATTGATCTTTCT
1 TTTGATTGATCTTTCT
36383043 AATATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.15, T:0.61
Consensus pattern (17 bp):
TTTGATTGATCTTTCTG
Found at i:36388282 original size:12 final size:12
Alignment explanation
Indices: 36388262--36388315 Score: 60
Period size: 12 Copynumber: 4.7 Consensus size: 12
36388252 CAGTAAAATA
36388262 ATAATAAATAAT
1 ATAATAAATAAT
*
36388274 ATAACAAATAAT
1 ATAATAAATAAT
36388286 A-AATAAATAA-
1 ATAATAAATAAT
36388296 ATAAATAAA-AAT
1 AT-AATAAATAAT
*
36388308 AAAATAAA
1 ATAATAAA
36388316 GAAAAGGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
10 1 0.03
11 16 0.44
12 19 0.53
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:36388290 original size:4 final size:4
Alignment explanation
Indices: 36388264--36388304 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
36388254 GTAAAATAAT
*
36388264 AATA AAT- AATA TAACA AAT- AATA AATA AATA AATA AATA AA
1 AATA AATA AATA -AATA AATA AATA AATA AATA AATA AATA AA
36388305 AATAAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 6 0.19
4 23 0.72
5 3 0.09
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:36388297 original size:15 final size:15
Alignment explanation
Indices: 36388257--36388315 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 15
36388247 TAGATCAGTA
36388257 AAATAAT-AATAAAT
1 AAATAATAAATAAAT
*
36388271 AATATAACAAAT-AAT
1 AA-ATAATAAATAAAT
36388286 AAATAAATAAATAAAT
1 AAAT-AATAAATAAAT
36388302 AAA-AATAAAATAAA
1 AAATAAT-AAATAAA
36388316 GAAAAGGGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
14 7 0.18
15 22 0.58
16 9 0.24
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAATAAATAAAT
Found at i:36388312 original size:19 final size:20
Alignment explanation
Indices: 36388257--36388315 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 20
36388247 TAGATCAGTA
*
36388257 AAAT-AATAATAAATAATAT
1 AAATAAATAATAAATAAAAT
*
36388276 -AACAAATAATAAAT-AAAT
1 AAATAAATAATAAATAAAAT
36388294 AAATAAATAA-AAATAAAAT
1 AAATAAATAATAAATAAAAT
36388313 AAA
1 AAA
36388316 GAAAAGGGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 9 0.26
19 25 0.74
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATAAATAATAAATAAAAT
Found at i:36390979 original size:94 final size:92
Alignment explanation
Indices: 36390871--36391039 Score: 257
Period size: 94 Copynumber: 1.8 Consensus size: 92
36390861 CATGTTCCTT
** * *
36390871 CATTAACTAGCTTTAATGTATCAGCTGGATGCATGAATTTCCAGCTGAAAAAAATAGCTCCCTTT
1 CATTAACTAGCTTTAATGTATCAGCTAAATACATGAATTTCCAGCCG-AAAAAA-AGCTCCCTTT
36390936 GTTCAAGCACATTCGGGTACATTGCTCTC
64 GTTCAAGCACATTCGGGTACATTGCTCTC
* *
36390965 CATTAAGTAGCTTTAATGTATCAGCTAAATACATGAATTTCCAGCCGCAAAAAAGCTCCCTTTGT
1 CATTAACTAGCTTTAATGTATCAGCTAAATACATGAATTTCCAGCCGAAAAAAAGCTCCCTTTGT
*
36391030 TCATGCACAT
66 TCAAGCACAT
36391040 GTGGGTGCAT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 21 0.31
93 5 0.07
94 42 0.62
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (92 bp):
CATTAACTAGCTTTAATGTATCAGCTAAATACATGAATTTCCAGCCGAAAAAAAGCTCCCTTTGT
TCAAGCACATTCGGGTACATTGCTCTC
Found at i:36391084 original size:92 final size:93
Alignment explanation
Indices: 36390878--36391105 Score: 236
Period size: 92 Copynumber: 2.5 Consensus size: 93
36390868 CTTCATTAAC
* ** * * *
36390878 TAGCTTTAATGTATCAGCTGGATGCATGAATTTCCAGCTGAAAAAAATAGCTCCCTTTGTTCAAG
1 TAGCTTCAATGTATCAGCTAAATACATGAATTTCCAGCCG-CAAAAATAGCTCCCTTTGTTCAAG
*
36390943 CACATTCGGGTACATTGCTCTCCATTAAG
65 CACATTCGGGTACATTGCTCTCCAATAAG
* *
36390972 TAGCTTTAATGTATCAGCTAAATACATGAATTTCCAGCCGCAAAAA-AGCTCCCTTTGTTCATGC
1 TAGCTTCAATGTATCAGCTAAATACATGAATTTCCAGCCGCAAAAATAGCTCCCTTTGTTCAAGC
*
36391036 ACATGT-GGGTGCA-TGCT-TCCACAATAA-
66 ACAT-TCGGGTACATTGCTCT-C-CAATAAG
* *
36391063 TAAGCTTCATTG-ATTCAGCTAAATACATGTATGTT-CAGCCGCA
1 T-AGCTTCAATGTA-TCAGCTAAATACATGAAT-TTCCAGCCGCA
36391106 TGAATGTTTA
Statistics
Matches: 117, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
90 1 0.01
91 7 0.06
92 65 0.56
93 8 0.07
94 36 0.31
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (93 bp):
TAGCTTCAATGTATCAGCTAAATACATGAATTTCCAGCCGCAAAAATAGCTCCCTTTGTTCAAGC
ACATTCGGGTACATTGCTCTCCAATAAG
Found at i:36399947 original size:19 final size:20
Alignment explanation
Indices: 36399910--36399947 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
36399900 CTAAAAAAAT
* *
36399910 GCATTTCAATGACACTCAAA
1 GCATTACAATGACAATCAAA
36399930 GCATTACAA-GACAATCAA
1 GCATTACAATGACAATCAA
36399948 CCTAAAGCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.45, C:0.24, G:0.11, T:0.21
Consensus pattern (20 bp):
GCATTACAATGACAATCAAA
Found at i:36401743 original size:37 final size:38
Alignment explanation
Indices: 36401693--36401772 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
36401683 TTATTACGAA
* *
36401693 GTCTTACCCGGAC-ATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAATTC-CCACACGAAGTCATCGG
*
36401730 GTCTTACCCGGACAAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
36401768 GTCTT
1 GTCTT
36401773 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.34
38 23 0.61
39 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
Found at i:36401969 original size:47 final size:47
Alignment explanation
Indices: 36401891--36402366 Score: 799
Period size: 47 Copynumber: 10.1 Consensus size: 47
36401881 CCCTTCGGGA
* * * * * * *
36401891 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
36401938 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36401985 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36402032 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36402079 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36402126 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36402173 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36402220 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36402267 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36402314 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36402363 CTTA
1 CTTA
36402367 CTATCATTTC
Statistics
Matches: 408, Mismatches: 19, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
47 366 0.90
49 42 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36405461 original size:33 final size:33
Alignment explanation
Indices: 36405424--36405495 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
36405414 ACGTTCATAG
** *
36405424 TGCCATAACCGGGTTAGGGTCTTATCATCAAGA
1 TGCCATAACCCAGCTAGGGTCTTATCATCAAGA
* * *
36405457 TGCCATAGCCCAGCTATGGTCTTATCATCAGGA
1 TGCCATAACCCAGCTAGGGTCTTATCATCAAGA
36405490 TGCCAT
1 TGCCAT
36405496 TGGCTAGCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (33 bp):
TGCCATAACCCAGCTAGGGTCTTATCATCAAGA
Found at i:36405505 original size:33 final size:33
Alignment explanation
Indices: 36405441--36405513 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
36405431 ACCGGGTTAG
36405441 GGTCTTATCATCAAGATGCCATAGCCCAGCTAT
1 GGTCTTATCATCAAGATGCCATAGCCCAGCTAT
* * * *
36405474 GGTCTTATCATCAGGATGCCATTGGCTAGCTAT
1 GGTCTTATCATCAAGATGCCATAGCCCAGCTAT
*
36405507 GGCCTTA
1 GGTCTTA
36405514 CGTATATACA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (33 bp):
GGTCTTATCATCAAGATGCCATAGCCCAGCTAT
Found at i:36430279 original size:174 final size:174
Alignment explanation
Indices: 36429987--36430314 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
36429977 AACTCAAGGT
* *
36429987 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
**
36430052 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGTGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
36430117 ACTTTAAACTCACACACTTAGTGCCATGTATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGTATTTCAAGTTCGCAC
* *
36430161 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAGTAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36430226 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
36430291 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36430315 TGTACAATTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGTATTTCAAGTTCGCAC
Found at i:36430306 original size:29 final size:30
Alignment explanation
Indices: 36430267--36430345 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
36430257 CTTAATAATC
36430267 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
36430297 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
36430326 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36430346 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:36439949 original size:16 final size:16
Alignment explanation
Indices: 36439925--36439998 Score: 57
Period size: 15 Copynumber: 4.9 Consensus size: 16
36439915 CACTATAGTA
*
36439925 TCAGTATCTATAGTTT
1 TCAGAATCTATAGTTT
*
36439941 TCAGAATCTAAAG-TT
1 TCAGAATCTATAGTTT
* *
36439956 TCA-CA-GTATAGTTT
1 TCAGAATCTATAGTTT
* *
36439970 TCAAAATCTAGAG-TT
1 TCAGAATCTATAGTTT
*
36439985 TCATAATCTATAGT
1 TCAGAATCTATAGT
36439999 ATTCTATACT
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
13 4 0.09
14 6 0.14
15 19 0.43
16 15 0.34
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.41
Consensus pattern (16 bp):
TCAGAATCTATAGTTT
Found at i:36446985 original size:51 final size:52
Alignment explanation
Indices: 36446769--36447110 Score: 303
Period size: 51 Copynumber: 6.8 Consensus size: 52
36446759 TTTTATCATT
** *
36446769 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGGTC--AGTTTTAC
1 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTAC
* * * *
36446819 AG-TTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTAC
1 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTAC
* * * * *
36446869 GGCT-CACGTAGTAGCCTTCACATAGTACTACATATGTGACCAAAGCTTT-T
1 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTAC
* * * * * * **
36446919 CGGTATC-CATTGTAGCCTTCACTTAGTACTACACATGTAACCGTAG-TTTAC
1 CGATA-CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTAC
* * *
36446970 CGATACACGTAGTAGCATTCACACAGTACTACACACGTG-CTCAAAGCTTT-T
1 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGAC-CAAAGCTTTAC
* * * * *
36447021 CGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TTTAT
1 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTTTAC
* *
36447072 CGATACACGTAGTAGCCTCCACACAGTACTACACACGTG
1 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
36447111 TTCATCGACA
Statistics
Matches: 239, Mismatches: 41, Indels: 23
0.79 0.14 0.08
Matches are distributed among these distances:
49 37 0.15
50 54 0.23
51 142 0.59
52 6 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (52 bp):
CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTAC
Found at i:36447015 original size:102 final size:102
Alignment explanation
Indices: 36446769--36447110 Score: 396
Period size: 102 Copynumber: 3.4 Consensus size: 102
36446759 TTTTATCATT
* * * *
36446769 CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGGTC--AG-TTTTACAGT-TCACGTAG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAGCTTTT-CGGTATCACATAG
* * * *
36446830 TAGCCTTCACATAGTACTACACACGTGATCAAGTTTTAC
65 TAGCCTTCACTTAGTACTACACATGTGACCTAG-TTTAC
* * * * * *
36446869 GGCT-CACGTAGTAGCCTTCACATAGTACTACATATGTGAC-CAAAGCTTTTCGGTATC-CATTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG-CTCAAAGCTTTTCGGTATCACATAG
*
36446931 TAGCCTTCACTTAGTACTACACATGTAACCGTAGTTTAC
65 TAGCCTTCACTTAGTACTACACATGTGACC-TAGTTTAC
* *
36446970 CGATACACGTAGTAGCATTCACACAGTACTACACACGTGCTCAAAGCTTTTCGATA-CACATAGT
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAGCTTTTCGGTATCACATAGT
*
36447034 AGCCTTCACTTAGTACTACACATGTGACCATTA-TTTAT
66 AGCCTTCACTTAGTACTACACATGTGACC--TAGTTTAC
*
36447072 CGATACACGTAGTAGCCTCCACACAGTACTACACACGTG
1 CGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
36447111 TTCATCGACA
Statistics
Matches: 206, Mismatches: 26, Indels: 18
0.82 0.10 0.07
Matches are distributed among these distances:
99 33 0.16
100 2 0.01
101 43 0.21
102 126 0.61
103 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (102 bp):
CGATACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAGCTTTTCGGTATCACATAGT
AGCCTTCACTTAGTACTACACATGTGACCTAGTTTAC
Found at i:36447087 original size:153 final size:149
Alignment explanation
Indices: 36446767--36447109 Score: 383
Period size: 153 Copynumber: 2.3 Consensus size: 149
36446757 ATTTTTATCA
* *
36446767 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGGTCAGTTTTACAGTTCACGTAGTA
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCGTCAGTTTTACAGTACACGTAGTA
* * * *
36446832 GCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCTCACGTAGTAGCCTTCACATAGTAC
66 GCATTCACACAGTACTACACACGTGATCAAGTTTTACGGATCACATAGTAGCCTTCACATAGTAC
*
36446897 TACATATGTGACCAAAGCTT
131 TACACATGTGACCAAA-CTT
* * * * * *
36446917 TTCGGTATC-CATTGTAGCCTTCACTTAGTACTACACATGTAACCGT-AG-TTTACCGATACACG
1 TTCGATA-CACGTAGTAGCCTTCACATAGTACTACACACGT---CGTCAGTTTTACAG-TACACG
*
36446979 TAGTAGCATTCACACAGTACTACACACGTGCTCAAAGCTTTT-C-GATACACATAGTAGCCTTCA
61 TAGTAGCATTCACACAGTACTACACACGTGATC-AAG-TTTTACGGAT-CACATAGTAGCCTTCA
* *
36447042 CTTAGTACTACACATGTGACCATTA-TT
123 CATAGTACTACACATGTGACCA-AACTT
* *
36447069 TATCGATACACGTAGTAGCCTCCACACAGTACTACACACGT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGT
36447110 GTTCATCGAC
Statistics
Matches: 159, Mismatches: 23, Indels: 19
0.79 0.11 0.09
Matches are distributed among these distances:
150 33 0.21
151 7 0.04
152 43 0.27
153 71 0.45
154 5 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (149 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCGTCAGTTTTACAGTACACGTAGTA
GCATTCACACAGTACTACACACGTGATCAAGTTTTACGGATCACATAGTAGCCTTCACATAGTAC
TACACATGTGACCAAACTT
Found at i:36447906 original size:10 final size:10
Alignment explanation
Indices: 36447891--36447950 Score: 66
Period size: 11 Copynumber: 5.6 Consensus size: 10
36447881 GAATCTTGAA
*
36447891 AAAATTAATC
1 AAAATTAATT
36447901 AAAATTTAATAT
1 AAAA-TTAAT-T
36447913 AAAATTAATT
1 AAAATTAATT
*
36447923 AAAATTTATTAT
1 AAAA-TTAAT-T
36447935 AAAATTAATT
1 AAAATTAATT
36447945 AAAATT
1 AAAATT
36447951 CAACATGTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
10 16 0.37
11 18 0.42
12 9 0.21
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATTAATT
Found at i:36447919 original size:22 final size:22
Alignment explanation
Indices: 36447891--36447950 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
36447881 GAATCTTGAA
*
36447891 AAAATTAATCAAAATTTAATAT
1 AAAATTAATTAAAATTTAATAT
*
36447913 AAAATTAATTAAAATTTATTAT
1 AAAATTAATTAAAATTTAATAT
36447935 AAAATTAATTAAAATT
1 AAAATTAATTAAAATT
36447951 CAACATGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTAATTAAAATTTAATAT
Found at i:36449932 original size:28 final size:27
Alignment explanation
Indices: 36449869--36450020 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
36449859 TTATTAAGTC
* *
36449869 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
36449896 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
36449924 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36449951 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36449979 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36450006 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36450021 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36449953 original size:55 final size:55
Alignment explanation
Indices: 36449869--36450045 Score: 255
Period size: 55 Copynumber: 3.2 Consensus size: 55
36449859 TTATTAAGTC
* *
36449869 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
36449924 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
36449979 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
36450035 CGCACACTTAG
1 CGCACACTTAG
36450046 CGCCAATCTC
Statistics
Matches: 110, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 94 0.85
56 16 0.15
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:36453834 original size:12 final size:12
Alignment explanation
Indices: 36453817--36453842 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36453807 ACCTCAAAGA
36453817 TTTTATAAATAT
1 TTTTATAAATAT
36453829 TTTTATAAATAT
1 TTTTATAAATAT
36453841 TT
1 TT
36453843 ATGGAGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTATAAATAT
Found at i:36455578 original size:51 final size:51
Alignment explanation
Indices: 36455502--36455663 Score: 279
Period size: 51 Copynumber: 3.2 Consensus size: 51
36455492 GATCAGTAAT
* *
36455502 AAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGAC
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGAC
*
36455553 AAGTGATAATTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGAC
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGAC
* *
36455604 AAGTGATAAGTGGTAGCTTTAGCTACACTTATTTGTTCAGTGACAAGTGAC
1 AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGAC
36455655 AAGTGATAA
1 AAGTGATAA
36455664 ATGTGATGTA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 105 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (51 bp):
AAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGAC
Found at i:36456956 original size:25 final size:26
Alignment explanation
Indices: 36456928--36456982 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
36456918 TAATTAGTAT
*
36456928 AAAATATT-AATAATTCAATAAAATG
1 AAAATATTAAATAATTAAATAAAATG
36456953 AAAA-ATTAAATAATTAAATAAAATG
1 AAAATATTAAATAATTAAATAAAATG
*
36456978 GAAAT
1 AAAAT
36456983 TTATGAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 3 0.12
25 23 0.88
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (26 bp):
AAAATATTAAATAATTAAATAAAATG
Found at i:36457672 original size:16 final size:15
Alignment explanation
Indices: 36457647--36457680 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
36457637 AAAGTTGATA
*
36457647 ATAATTAATATATATT
1 ATAATAAATATA-ATT
36457663 ATAATAAATATAATT
1 ATAATAAATATAATT
36457678 ATA
1 ATA
36457681 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:36461580 original size:50 final size:52
Alignment explanation
Indices: 36461471--36461580 Score: 134
Period size: 50 Copynumber: 2.2 Consensus size: 52
36461461 TTAACGCAAG
* * * *
36461471 ACTTAATTTAATGATGCAGGCTTAAACTAACATGGGAGTTACATAATGCATG
1 ACTTTATTTAATGATGCAGACTTAAACTAACATGGAAGTTACATAATGCATA
* * * *
36461523 TCATTATTT-ATGATGCATACTT-AACTATCATGGAAGTTACATAATGCATA
1 ACTTTATTTAATGATGCAGACTTAAACTAACATGGAAGTTACATAATGCATA
36461573 ACTTTATT
1 ACTTTATT
36461581 AAATCCAGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 31 0.65
51 11 0.23
52 6 0.12
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (52 bp):
ACTTTATTTAATGATGCAGACTTAAACTAACATGGAAGTTACATAATGCATA
Found at i:36467407 original size:39 final size:39
Alignment explanation
Indices: 36467286--36467509 Score: 274
Period size: 40 Copynumber: 5.7 Consensus size: 39
36467276 GCTCCTCGTT
* * *
36467286 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
36467326 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
36467366 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* *
36467405 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GATTAGTAACTCGCA
* * * *
36467444 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
36467485 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36467510 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
38 10 0.06
39 53 0.33
40 88 0.54
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:36467469 original size:118 final size:119
Alignment explanation
Indices: 36467286--36467509 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 119
36467276 GCTCCTCGTT
**
36467286 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
36467351 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
* **
36467405 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGAATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* * *
36467466 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
36467510 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
117 6 0.07
118 63 0.69
119 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
Found at i:36475520 original size:119 final size:120
Alignment explanation
Indices: 36475266--36475528 Score: 345
Period size: 119 Copynumber: 2.2 Consensus size: 120
36475256 GCTCCTCGTT
* * * * *
36475266 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGG
* *
36475331 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
*
36475386 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCACAAATGCCTTCGAG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCC-GATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
* ** * *
36475449 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTCGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TCGCA
*
36475506 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCG
36475529 GACATCATTC
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
118 4 0.03
119 65 0.52
120 54 0.43
121 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
Found at i:36475530 original size:40 final size:40
Alignment explanation
Indices: 36475266--36475530 Score: 340
Period size: 40 Copynumber: 6.7 Consensus size: 40
36475256 GCTCCTCGTT
* * *
36475266 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36475306 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36475346 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
36475386 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36475426 CAAATGCCTTCGAG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
36475465 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
36475506 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36475531 CATCATTCAA
Statistics
Matches: 202, Mismatches: 17, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
38 1 0.00
39 31 0.15
40 157 0.78
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36478780 original size:33 final size:33
Alignment explanation
Indices: 36478696--36478782 Score: 111
Period size: 33 Copynumber: 2.6 Consensus size: 33
36478686 AGTCTTCCAA
** * * *
36478696 GACAGTAAACATGGAACAGAGATAGTCTGTTGG
1 GACAGTAAACACAGAATAGAGATACTCTGCTGG
* *
36478729 GACAGTAAACACAAAATAGAGATACTTTGCTGG
1 GACAGTAAACACAGAATAGAGATACTCTGCTGG
36478762 GACAGTAAACACAGAATAGAG
1 GACAGTAAACACAGAATAGAG
36478783 TAAGTCCATC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.18
Consensus pattern (33 bp):
GACAGTAAACACAGAATAGAGATACTCTGCTGG
Found at i:36481040 original size:16 final size:17
Alignment explanation
Indices: 36481015--36481049 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
36481005 CAATCATCCT
36481015 TCATCCCTCATCC-CTC
1 TCATCCCTCATCCTCTC
*
36481031 TCATCTCTCATCCTCTC
1 TCATCCCTCATCCTCTC
36481048 TC
1 TC
36481050 TCAAATATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.11, C:0.51, G:0.00, T:0.37
Consensus pattern (17 bp):
TCATCCCTCATCCTCTC
Found at i:36484545 original size:684 final size:683
Alignment explanation
Indices: 36483000--36485065 Score: 4017
Period size: 683 Copynumber: 3.0 Consensus size: 683
36482990 ATTGATGTGT
36483000 AGAAAGGT-GAACTCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAAT
1 AGAAAGGTGGAA-TCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAAT
* **
36483064 GAAATTTCTCGATCCGGCAGAGGAGTGTTCAATTATAAAAGAGATAGAAACCTTTGTTTCTTTGG
65 GAAATTTCTCGATCCGACAGAGGAGTGTTCAATTATGGAAGAGATAGAAACCTTTGTTTCTTTGG
36483129 AAAGTAATTTTAAAGAAGATTCATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAA
130 AAAGTAATTTTAAAGAAGATTCATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAA
36483194 GGTGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGA
195 GGTGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGA
36483259 ACCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCACCTAAAC
260 ACCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCACCTAAAC
36483324 TCGAACTAAAGGTACTTCCTTCCCATTTGAAATACGTGTATTTAGGTGATTGTTCTACTTTTCCT
325 TCGAACTAAAGGTACTTCCTTCCCATTTGAAATACGTGTATTTAGGTGATTGTTCTACTTTTCCT
36483389 GTGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATT
390 GTGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATT
36483454 TAAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCCTTTTTTTGCATGCATAA
455 TAAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCCTTTTTTTGCATGCATAA
36483519 AATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGA
520 AATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGA
36483584 AAGAAGTTGTGAGAAAGGAAGTGATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAAT
585 AAGAAGTTGTGAGAAAGGAAGTGATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAAT
*
36483649 AGTTCGTGGGCAAGTTCGGTGTCGTGTGTGCCGA
650 AGTTCGTGGGCAAGTCCGGTGTCGTGTGTGCCGA
36483683 AGAAAGGTGGAATCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAATG
1 AGAAAGGTGGAATCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAATG
36483748 AAATTTCTCGATCCGACAGAGGAGTGTTCAATTATGGAAGAGATAGAAACCTTTGTTTCTTTGGA
66 AAATTTCTCGATCCGACAGAGGAGTGTTCAATTATGGAAGAGATAGAAACCTTTGTTTCTTTGGA
*
36483813 AAGTAATTTTAAAGAAGATTTATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAAG
131 AAGTAATTTTAAAGAAGATTCATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAAG
*
36483878 ATGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGAA
196 GTGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGAA
36483943 CCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCACCTAAACT
261 CCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCACCTAAACT
36484008 CGAACTAAAGGTACTTCCTTCCCATTTGAAATACGTGTATTTAGGTGATTGTTCTACTTTTCCTG
326 CGAACTAAAGGTACTTCCTTCCCATTTGAAATACGTGTATTTAGGTGATTGTTCTACTTTTCCTG
36484073 TGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATTT
391 TGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATTT
36484138 AAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCCTTTTTTTTGCATGCATAA
456 AAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCC-TTTTTTTGCATGCATAA
36484203 AATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGA
520 AATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGA
*
36484268 AAGAAGTTGTGAGAAAGGAAGTAATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAAT
585 AAGAAGTTGTGAGAAAGGAAGTGATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAAT
36484333 AGTTCGTGGGCAAGTCCGGTGTCGTGTGTGCCGA
650 AGTTCGTGGGCAAGTCCGGTGTCGTGTGTGCCGA
36484367 AGAAAGGTGGAATCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAATG
1 AGAAAGGTGGAATCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAATG
36484432 AAATTTCTCGATCCGACAGAGGAGTGTTCAATTATGGAAGAGATAGAAACCTTTGTTTCTTTGGA
66 AAATTTCTCGATCCGACAGAGGAGTGTTCAATTATGGAAGAGATAGAAACCTTTGTTTCTTTGGA
36484497 AAGTAATTTTAAAGAAGATTCATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAAG
131 AAGTAATTTTAAAGAAGATTCATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAAG
36484562 GTGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGAA
196 GTGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGAA
*
36484627 CCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCATCTAAACT
261 CCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCACCTAAACT
*
36484692 CGAACTAAAGGTACTTCCTTCCCATTTGAAATATGTGTATTTAGGTGATTGTTCTACTTTTCCTG
326 CGAACTAAAGGTACTTCCTTCCCATTTGAAATACGTGTATTTAGGTGATTGTTCTACTTTTCCTG
36484757 TGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATTT
391 TGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATTT
36484822 AAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCCTTTTTTTGCATGCATAAA
456 AAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCCTTTTTTTGCATGCATAAA
36484887 ATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGAA
521 ATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGAA
36484952 AGAAGTTGTGAGAAAGGAAGTGATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAATA
586 AGAAGTTGTGAGAAAGGAAGTGATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAATA
36485017 GTTCGTGGGCAAGTCCGGTGTCGTGTGTGCCGA
651 GTTCGTGGGCAAGTCCGGTGTCGTGTGTGCCGA
*
36485050 AGAACGGTGGAATCAC
1 AGAAAGGTGGAATCAC
36485066 GATTGTTGAA
Statistics
Matches: 1368, Mismatches: 13, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
683 688 0.50
684 680 0.50
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (683 bp):
AGAAAGGTGGAATCACCATGCGAGTTCAAGTCGATCAGGTAACCTTTAATATTCTTAAAGCAATG
AAATTTCTCGATCCGACAGAGGAGTGTTCAATTATGGAAGAGATAGAAACCTTTGTTTCTTTGGA
AAGTAATTTTAAAGAAGATTCATTGGAGAAAGCTTTAGATCTTGACCATTTGGAGTATGAAGAAG
GTGAAGAAAACATGGTTTTGATGAAATCCAATTCGAGAAATCATATTCAATCCACACGGTTTGAA
CCGTTGGAGTTGGAAGTCAGAGAATTTGTACAACCCAAGTTGTCAATCGAAGAACCACCTAAACT
CGAACTAAAGGTACTTCCTTCCCATTTGAAATACGTGTATTTAGGTGATTGTTCTACTTTTCCTG
TGATTATTTCAGTGGAACTGACAAAAGATTAAGAGGAGCGATTAATTGCTGTTCTAAAGAAATTT
AAGAAAGTAATTGGTTGGACCATAGCTGATATTCGAGGTATAAGCCCTTTTTTTGCATGCATAAA
ATCATTTTAAAAGAAGGTGAAAGAGCTAGAATTGATAGGCAAATGAGGCTCAATCCTATTATGAA
AGAAGTTGTGAGAAAGGAAGTGATCAAATGGCTAGATGAAGGAATCATCTATCCTATTTCAAATA
GTTCGTGGGCAAGTCCGGTGTCGTGTGTGCCGA
Found at i:36489261 original size:16 final size:17
Alignment explanation
Indices: 36489234--36489268 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
36489224 AGAGAGTTGA
36489234 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
36489251 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
36489267 GA
1 GA
36489269 TTGAAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.51, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:36491248 original size:45 final size:45
Alignment explanation
Indices: 36491184--36491270 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
36491174 CAGATACTCG
*
36491184 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCT
1 GTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTCCT
* *
36491229 GTGGAATCAGCACATAGCAACCGCCTTATTAATTAATGATGT
1 GTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGT
36491271 TCGGTTCACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTATTAATCAATGATGTCCT
Found at i:36491339 original size:51 final size:49
Alignment explanation
Indices: 36491281--36491463 Score: 170
Period size: 51 Copynumber: 3.6 Consensus size: 49
36491271 TCGGTTCACA
* *
36491281 TAGTAGCCTGCACATAGTACTATACATGTGACCATTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTA-CATC-GATACACG
* * ** * * *
36491332 TAGTAGCCTACACATAGTACTACACACGTGATCAAAACTATCCAGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTAC-ATCGA-TACACG
* * * * * *
36491383 TAGTAGCCTGCACATAGTACTGCACATGCGACCTATTA-TTCCGGTATACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATTACAT-CGATACACG
36491433 TAGTAGCCTGCACATAGTACTACACACGTGA
1 TAGTAGCCTGCACATAGTACTACACACGTGA
36491464 TCATCACTTT
Statistics
Matches: 103, Mismatches: 25, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
50 34 0.33
51 67 0.65
52 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATTACATCGATACACG
Found at i:36491458 original size:101 final size:101
Alignment explanation
Indices: 36491279--36491466 Score: 279
Period size: 101 Copynumber: 1.9 Consensus size: 101
36491269 GTTCGGTTCA
* * *
36491279 CATAGTAGCCTGCACATAGTACTATACATGTGACCATTACCATCTGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTA-CATCCGATACACGTAGTAGCCTACA
36491344 CATAGTACTACACACGTGATCAAAACTATCCAGTACG
65 CATAGTACTACACACGTGATCAAAACTATCCAGTACG
* * * * *
36491381 CATAGTAGCCTGCACATAGTACTGCACATGCGACCTATTA-TTCCGGTATACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATTACATCCGATACACGTAGTAGCCTACA
36491445 CATAGTACTACACACGTGATCA
65 CATAGTACTACACACGTGATCA
36491467 TCACTTTCAC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
101 41 0.53
102 32 0.42
103 4 0.05
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCAAAACTATCCAGTACG
Found at i:36499189 original size:50 final size:50
Alignment explanation
Indices: 36499114--36499408 Score: 401
Period size: 50 Copynumber: 5.9 Consensus size: 50
36499104 TTTCTTGTAT
* * * ** * *
36499114 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* ** * ** * *
36499164 TGCCCATACCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* *
36499214 TGCCAACGCCATGTCCCAGACATGGTCTTTCATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
*
36499264 TGCCAACGCCATGTCCCAGACATGGTCTTACATAAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
*
36499314 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
* *
36499364 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGGCCTCTCAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCAT
36499409 AATCTCAATG
Statistics
Matches: 217, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 217 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
Found at i:36502501 original size:16 final size:17
Alignment explanation
Indices: 36502480--36502515 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
36502470 TCAATCATCC
36502480 CTCATCCCTCATCC-CT
1 CTCATCCCTCATCCTCT
*
36502496 CTCATCTCTCATCCTCT
1 CTCATCCCTCATCCTCT
36502513 CTC
1 CTC
36502516 TCAACTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.11, C:0.53, G:0.00, T:0.36
Consensus pattern (17 bp):
CTCATCCCTCATCCTCT
Found at i:36505007 original size:131 final size:131
Alignment explanation
Indices: 36504773--36505035 Score: 413
Period size: 131 Copynumber: 2.0 Consensus size: 131
36504763 AATGGTCAAG
* * *
36504773 AGAAAAACTTGGGTATTAGGAGTTGTAGGGAAAAACACACTCTAGTATTTTATTTAAGTGAAGAA
1 AGAAAAACTTGGGTAATAGGAGTTGTAGGGAAAAACACACTCCAATATTTTATTTAAGTGAAGAA
* * * *
36504838 AAGAAATATAGGAGAAGAGGTGGAATGATAATTTGGAAATGGATCAAGTAGAGGACTTGAAGAAG
66 AAGAAATATAGGAGAAGAGGTGGAAGGACAATTTGGAAAGGGATCAAGTAGAGGACTTGAAAAAG
36504903 T
131 T
*
36504904 AGAAAAACATT-GGTAATAGGAGTTGTAGGG-GAAACTACACTCCAATATTTTATTTAAGTGAAG
1 AGAAAAAC-TTGGGTAATAGGAGTTGTAGGGAAAAAC-ACACTCCAATATTTTATTTAAGTGAAG
*
36504967 AAAAGAAATATAGGAGAAGAGGTGGAAGGACAATTTGGAAAGGGATCAAGTAGAGTACTTGAAAA
64 AAAAGAAATATAGGAGAAGAGGTGGAAGGACAATTTGGAAAGGGATCAAGTAGAGGACTTGAAAA
36505032 AGT
129 AGT
36505035 A
1 A
36505036 TGGACTAACT
Statistics
Matches: 121, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
130 4 0.03
131 115 0.95
132 2 0.02
ACGTcount: A:0.43, C:0.06, G:0.27, T:0.24
Consensus pattern (131 bp):
AGAAAAACTTGGGTAATAGGAGTTGTAGGGAAAAACACACTCCAATATTTTATTTAAGTGAAGAA
AAGAAATATAGGAGAAGAGGTGGAAGGACAATTTGGAAAGGGATCAAGTAGAGGACTTGAAAAAG
T
Found at i:36517088 original size:28 final size:27
Alignment explanation
Indices: 36517021--36517169 Score: 201
Period size: 27 Copynumber: 5.5 Consensus size: 27
36517011 TTATTAAGTC
* *
36517021 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36517048 CGCACA-TTAGTGCTACATAATCATACA
1 CGCACACTTAGTGCTACATAATCA-ACT
* *
36517075 AGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36517102 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36517130 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36517157 CGCACACTTAGTG
1 CGCACACTTAGTG
36517170 TGCACAATTT
Statistics
Matches: 110, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
26 15 0.14
27 53 0.48
28 42 0.38
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36517136 original size:55 final size:55
Alignment explanation
Indices: 36517021--36517195 Score: 210
Period size: 55 Copynumber: 3.2 Consensus size: 55
36517011 TTATTAAGTC
* * *
36517021 CGCACACTCAGTGCTATATAATCAACTCGCACA-TTAGTGCTACATAATCATACA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACA
* * * *
36517075 AGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACA
* * * * * *
36517130 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTG-TGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACA
36517185 CGCACACTTAG
1 CGCACACTTAG
36517196 CGCCAATCTC
Statistics
Matches: 104, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
54 33 0.32
55 71 0.68
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACA
Found at i:36525086 original size:28 final size:27
Alignment explanation
Indices: 36525022--36525173 Score: 225
Period size: 27 Copynumber: 5.6 Consensus size: 27
36525012 TTATTAAGTC
* *
36525022 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
36525049 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
36525077 CGCACACTTAGTGCTACA-AAGTCAACT
1 CGCACACTTAGTGCTACATAA-TCAACT
*
36525104 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36525132 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36525159 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36525174 GCACAATTTA
Statistics
Matches: 116, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
27 65 0.56
28 51 0.44
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36525106 original size:55 final size:54
Alignment explanation
Indices: 36525022--36525198 Score: 228
Period size: 55 Copynumber: 3.2 Consensus size: 54
36525012 TTATTAAGTC
* * *
36525022 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACA-AATCAACTCGCACACTTAGTGCTACATAATCAAACT
*
36525077 CGCACACTTAGTGCTACAAAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACAAA-TCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
36525132 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACA-AATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
36525188 CGCACACTTAG
1 CGCACACTTAG
36525199 CGCCAATCTC
Statistics
Matches: 108, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
54 2 0.02
55 89 0.82
56 17 0.16
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACAAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:36529410 original size:51 final size:50
Alignment explanation
Indices: 36529330--36529426 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 50
36529320 GCCTTTCCAT
* * *
36529330 CTTTTATTCCCTATGTTCATACCTTTACACCTTTAAACAATTTTTATTCA
1 CTTTTATTCCCCAAGTTCATACCTTTACACCTTTAAACAATCTTTATTCA
*
36529380 CTTTCTATTCCCCAAGTTCGTACCTTTACACCTTTAAACAATCTTTA
1 CTTT-TATTCCCCAAGTTCATACCTTTACACCTTTAAACAATCTTTA
36529427 CTCCACAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 4 0.10
51 38 0.90
ACGTcount: A:0.26, C:0.27, G:0.03, T:0.44
Consensus pattern (50 bp):
CTTTTATTCCCCAAGTTCATACCTTTACACCTTTAAACAATCTTTATTCA
Found at i:36530898 original size:15 final size:15
Alignment explanation
Indices: 36530870--36530913 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36530860 AAGGCCAAGG
* *
36530870 AAGAAACTACTGAGA
1 AAGAAGCTATTGAGA
*
36530885 CAGAAGCTATTGAGA
1 AAGAAGCTATTGAGA
*
36530900 AAGAATCTATTGAG
1 AAGAAGCTATTGAG
36530914 GACATTGTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.20
Consensus pattern (15 bp):
AAGAAGCTATTGAGA
Found at i:36558782 original size:20 final size:20
Alignment explanation
Indices: 36558752--36558800 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
36558742 GAACAAAAAT
*
36558752 CAAAGGTATTGATACCTTTTA
1 CAAA-GTATTGATACCTTCTA
* *
36558773 TAAAGTATTGGTACCTTCTA
1 CAAAGTATTGATACCTTCTA
36558793 CAAAGTAT
1 CAAAGTAT
36558801 CAATACGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (20 bp):
CAAAGTATTGATACCTTCTA
Found at i:36561040 original size:17 final size:16
Alignment explanation
Indices: 36561011--36561052 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
36561001 TTACTTTTAT
36561011 AATTTATAATTTAATAC
1 AATTT-TAATTTAATAC
36561028 AATTTTAATTTTAATAC
1 AATTTTAA-TTTAATAC
*
36561045 TATTTTAA
1 AATTTTAA
36561053 CAATTTAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTTAATTTAATAC
Found at i:36561477 original size:44 final size:44
Alignment explanation
Indices: 36561406--36561495 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
36561396 TTTGAAATAA
* * * *
36561406 AATAAAAGTTGTGATAATTATATATTTAAAAATAATTATAATTT
1 AATAAAAGTTGTGATAACTACACATTTAAAAATAATTAGAATTT
* *
36561450 AATAGAAGTTGTGATAACTACACATTTAAAAGTAATTAGAATTT
1 AATAAAAGTTGTGATAACTACACATTTAAAAATAATTAGAATTT
36561494 AA
1 AA
36561496 ATTAAATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (44 bp):
AATAAAAGTTGTGATAACTACACATTTAAAAATAATTAGAATTT
Found at i:36564364 original size:35 final size:35
Alignment explanation
Indices: 36564325--36564393 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
36564315 CTAAATTGTA
36564325 AAAATTTCAAAATTAAAGAGTAGAATTGAAAATAT
1 AAAATTTCAAAATTAAAGAGTAGAATTGAAAATAT
* *
36564360 AAAATTTCAAAATTAAGGGGTAGAATTGAAAATA
1 AAAATTTCAAAATTAAAGAGTAGAATTGAAAATA
36564394 GAGAGCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.55, C:0.03, G:0.14, T:0.28
Consensus pattern (35 bp):
AAAATTTCAAAATTAAAGAGTAGAATTGAAAATAT
Found at i:36565236 original size:20 final size:19
Alignment explanation
Indices: 36565211--36565257 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
36565201 TATAAGATGG
36565211 GAAATGAAATATGAA-ATGAT
1 GAAATGAAATATGAATAT--T
*
36565231 GAAATGAGATATGAATATT
1 GAAATGAAATATGAATATT
36565250 GAAATGAA
1 GAAATGAA
36565258 GTCATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (19 bp):
GAAATGAAATATGAATATT
Found at i:36565748 original size:25 final size:24
Alignment explanation
Indices: 36565722--36565770 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36565712 TGAGACTATG
*
36565722 TTTGATATGATAGCTTAGTTTAATGT
1 TTTGATAT-AT-GCTTAGCTTAATGT
*
36565748 TTTGGTATATGCTTAGCTTAATG
1 TTTGATATATGCTTAGCTTAATG
36565771 CTTGGTAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 2 0.10
26 7 0.33
ACGTcount: A:0.24, C:0.06, G:0.20, T:0.49
Consensus pattern (24 bp):
TTTGATATATGCTTAGCTTAATGT
Found at i:36566178 original size:54 final size:54
Alignment explanation
Indices: 36566072--36566193 Score: 129
Period size: 54 Copynumber: 2.3 Consensus size: 54
36566062 CTGTCACAAG
* * * * * * * *
36566072 GCCGTGTGACCCAAGTCAGTGAGTTACCCGGGTAGAGACATGGGCTGAGACAC-
1 GCCGTGTGTCCCAAGTAAGTAAGTTACACGGGCAGAGACACGAGATGAGACACA
* *
36566125 GACCGTGTGTCCCAAGTAAGTAAGTTACATGGGCAGAGACACGAGATGGGACACA
1 G-CCGTGTGTCCCAAGTAAGTAAGTTACACGGGCAGAGACACGAGATGAGACACA
*
36566180 GCCATGTGTCCCAA
1 GCCGTGTGTCCCAA
36566194 CTTCAAAAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
53 1 0.02
54 54 0.96
55 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.31, T:0.17
Consensus pattern (54 bp):
GCCGTGTGTCCCAAGTAAGTAAGTTACACGGGCAGAGACACGAGATGAGACACA
Found at i:36567790 original size:27 final size:26
Alignment explanation
Indices: 36567733--36567854 Score: 118
Period size: 27 Copynumber: 4.5 Consensus size: 26
36567723 GTTCACCATT
* * * *
36567733 TTGGCTTGCACTTGGACTATCCTCCC
1 TTGGCTTGTACTTGGACTGTCCGCAC
36567759 TTTGGCTTGTACTTGGACTGTCCGACAC
1 -TTGGCTTGTACTTGGACTGTCCG-CAC
* **
36567787 TTGGCTTGTACTTGGATTGTTTGCCAC
1 TTGGCTTGTACTTGGACTGTCCG-CAC
* *
36567814 TTGGCTTGCACTTGGACTGTCCGCTATT
1 TTGGCTTGTACTTGGACTGTCCGC-A-C
36567842 TTGGCTTGTACTT
1 TTGGCTTGTACTT
36567855 TTGTCTTGTA
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 63 0.81
28 14 0.18
ACGTcount: A:0.11, C:0.25, G:0.24, T:0.40
Consensus pattern (26 bp):
TTGGCTTGTACTTGGACTGTCCGCAC
Found at i:36567802 original size:54 final size:55
Alignment explanation
Indices: 36567733--36567854 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 55
36567723 GTTCACCATT
* *
36567733 TTGGCTTGCACTTGGACTATCCT-CC-CTTTGGCTTGTACTTGGACTGTCCGAC-A-C
1 TTGGCTTGTACTTGGACTAT-CTGCCAC-TTGGCTTGCACTTGGACTGTCCG-CTATC
* * * *
36567787 TTGGCTTGTACTTGGATTGTTTGCCACTTGGCTTGCACTTGGACTGTCCGCTATT
1 TTGGCTTGTACTTGGACTATCTGCCACTTGGCTTGCACTTGGACTGTCCGCTATC
36567842 TTGGCTTGTACTT
1 TTGGCTTGTACTT
36567855 TTGTCTTGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
53 2 0.03
54 42 0.72
55 14 0.24
ACGTcount: A:0.11, C:0.25, G:0.24, T:0.40
Consensus pattern (55 bp):
TTGGCTTGTACTTGGACTATCTGCCACTTGGCTTGCACTTGGACTGTCCGCTATC
Found at i:36567862 original size:13 final size:13
Alignment explanation
Indices: 36567840--36567870 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36567830 CTGTCCGCTA
36567840 TTTTGGCTTGTAC
1 TTTTGGCTTGTAC
*
36567853 TTTTGTCTTGTAC
1 TTTTGGCTTGTAC
36567866 TTTTG
1 TTTTG
36567871 CATCTCGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.13, G:0.19, T:0.61
Consensus pattern (13 bp):
TTTTGGCTTGTAC
Found at i:36570274 original size:28 final size:28
Alignment explanation
Indices: 36570235--36570299 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
36570225 TCGCCACTTA
*
36570235 GCTTGTACTTGGACTATCTGCCATTTTG
1 GCTTGCACTTGGACTATCTGCCATTTTG
36570263 GCTTGCACTTGGACTATCTGCCATTTTG
1 GCTTGCACTTGGACTATCTGCCATTTTG
36570291 GCTTGCACT
1 GCTTGCACT
36570300 GTCCACCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.14, C:0.25, G:0.22, T:0.40
Consensus pattern (28 bp):
GCTTGCACTTGGACTATCTGCCATTTTG
Found at i:36575103 original size:24 final size:23
Alignment explanation
Indices: 36575061--36575108 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
36575051 AAAATTTAAC
*
36575061 AAGTACCAAATCGAAAAAAAGATT
1 AAGTACCAAATC-AAAAAAAAATT
36575085 AAGTACCAAAT-AAAGAAAAAATT
1 AAGTACCAAATCAAA-AAAAAATT
36575108 A
1 A
36575109 TCAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 3 0.14
23 8 0.36
24 11 0.50
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.17
Consensus pattern (23 bp):
AAGTACCAAATCAAAAAAAAATT
Found at i:36576952 original size:27 final size:29
Alignment explanation
Indices: 36576921--36576974 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
36576911 ACATATATTC
*
36576921 TTTATATTC-TATA-ATCTATATACATTT
1 TTTATATTCATATATATATATATACATTT
*
36576948 TTTATTTTCATATATATATATATACAT
1 TTTATATTCATATATATATATATACAT
36576975 ACGTACTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 4 0.17
29 11 0.48
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTATATTCATATATATATATATACATTT
Found at i:36577060 original size:21 final size:23
Alignment explanation
Indices: 36577029--36577083 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
36577019 GAATATATAC
* *
36577029 ATACTTATATATA-TT-TTTTAT
1 ATACATATATATATTTCTTTTAA
*
36577050 GTACATATATATATTTCTTTTAA
1 ATACATATATATATTTCTTTTAA
36577073 ATACATATATA
1 ATACATATATA
36577084 GTTTTTAGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 11 0.39
22 2 0.07
23 15 0.54
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (23 bp):
ATACATATATATATTTCTTTTAA
Found at i:36580679 original size:20 final size:21
Alignment explanation
Indices: 36580654--36580699 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
36580644 CAGTGGAGGC
*
36580654 AAAAAAA-ACCAAAA-ACACA
1 AAAAAAAGAACAAAAGACACA
*
36580673 AAAAAAAGAACAAAAGAGACA
1 AAAAAAAGAACAAAAGACACA
36580694 AAAAAA
1 AAAAAA
36580700 TAAAAAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 7 0.30
20 6 0.26
21 10 0.43
ACGTcount: A:0.80, C:0.13, G:0.07, T:0.00
Consensus pattern (21 bp):
AAAAAAAGAACAAAAGACACA
Found at i:36582498 original size:50 final size:50
Alignment explanation
Indices: 36582444--36582630 Score: 142
Period size: 50 Copynumber: 3.7 Consensus size: 50
36582434 GCAATTTAAA
* * * *
36582444 AGATTGAAGCCGCAACAGCGAATCTTACTTCCATGGCGATACAGTGGAGC
1 AGATTAAAGCCGCAACGGCGAATCTTACTTCCATGACGATGCAGTGGAGC
* ** * ** * ** **
36582494 AGATTAAAACTACAACGGCAAATCTTACTTCCCCGAC-ATTGCAATTTAAA
1 AGATTAAAGCCGCAACGGCGAATCTTACTTCCATGACGA-TGCAGTGGAGC
* * *
36582544 AGATTGAAGCCGCAACGGTGAATCTTACTTCCATGCCGATGCAGTGGAGC
1 AGATTAAAGCCGCAACGGCGAATCTTACTTCCATGACGATGCAGTGGAGC
** * * * *
36582594 AGATTAAAGCTACAATGACGAATCTTGCTTCCCTGAC
1 AGATTAAAGCCGCAACGGCGAATCTTACTTCCATGAC
36582631 ATTGCAAATT
Statistics
Matches: 97, Mismatches: 38, Indels: 4
0.70 0.27 0.03
Matches are distributed among these distances:
49 1 0.01
50 95 0.98
51 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCGCAACGGCGAATCTTACTTCCATGACGATGCAGTGGAGC
Found at i:36582544 original size:100 final size:99
Alignment explanation
Indices: 36582371--36582744 Score: 426
Period size: 100 Copynumber: 3.7 Consensus size: 99
36582361 ATGAAGTTAC
* * * * ** *
36582371 CTTCCCTGGCAATGCAGTGGAACAGATTAAAGCTACAACGGTGAATCTTACTTTTCCAACATTGC
1 CTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCCGACATTGC
36582436 AATTTAAAAGATTGAAGCCGCAACAGCGAATCTTA
66 AATTTAAAAGATTGAAGCCGCAAC-GCGAATCTTA
* * *
36582471 CTTCCATGGCGATACAGTGGAGCAGATTAAAACTACAACGGCAAATCTTACTTCCCCGACATTGC
1 CTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCCGACATTGC
*
36582536 AATTTAAAAGATTGAAGCCGCAACGGTGAATCTTA
66 AATTTAAAAGATTGAAGCCGCAAC-GCGAATCTTA
* * * * *
36582571 CTTCCATGCCGATGCAGTGGAGCAGATTAAAGCTACAATGACGAATCTTGCTTCCCTGACATTGC
1 CTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCCGACATTGC
* * *
36582636 AAATTAAAAGATTGAGGCTGCAACGACGAATCTTA
66 AATTTAAAAGATTGAAGCCGCAACG-CGAATCTTA
* * * * * * ** * * *
36582671 CTTCTC-TGGTGGTGTAATGGGGCAGATTGAAGCTACAATAGCGGATCTTGCTTCCCCGACATCG
1 CTTC-CATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCCGACATTG
*
36582735 TAATTTAAAA
65 CAATTTAAAA
36582745 ATTTTAAAGC
Statistics
Matches: 234, Mismatches: 38, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
99 1 0.00
100 232 0.99
101 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (99 bp):
CTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCCGACATTGC
AATTTAAAAGATTGAAGCCGCAACGCGAATCTTA
Found at i:36582842 original size:45 final size:45
Alignment explanation
Indices: 36582765--36583795 Score: 505
Period size: 45 Copynumber: 22.7 Consensus size: 45
36582755 TATACATTAC
*
36582765 AGATCTTATCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGTA
1 AGATCTTGTCTTCCTGTA-TTGGCAGCGAAGTAGATCGAAGATAG-A
*
36582812 AG-TCTTGTCTTCCTGTATTGGCAGCAAAGTAGA-CTGAAGATA-A
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGA
* *
36582855 CAGATCTTGTCTTCCTGT-TTGACAGCGAAATAGATCGAAGATAGCA
1 -AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG-A
* * * *
36582901 AG-TCTTGTCTTTCTATATTGGCAGCAAAGTAGA-CTGAAGATAGT
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGA
* *
36582945 AGATCTTGTCTTCTTGTATTGGCAGCGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGA
* * * * *
36582990 AGACCTTGTCTTCCTGTATTGGCAGCAAAGTGGATTGAAGATAGC
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGA
* *
36583035 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATAGTA
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG-A
* *
36583081 AG-TCTTGTCTTCCTATATTGGCAGCGAAGTAGA-CAGAAGATAGC
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGA
* * * * * **
36583125 AGATCTTGTCTTCCTATACTGGCAGTGAAGCAGATCGAA-AGCACC
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA-TAGA
* * ** * * * * *
36583170 AG-CCTTATC-TCCT-TGAACGGCAGTGGAGTAGGTTGAAGATTA-C
1 AGATCTTGTCTTCCTGT-ATTGGCAGCGAAGTAGATCGAAGA-TAGA
* * * * * * * *
36583213 AGATCTTATCTCCCTAAGCAGTGG-TG-G-AGCATATCGAAGACA-A
1 AGATCTTGTCTTCCT--GTATTGGCAGCGAAGTAGATCGAAGATAGA
* * * *** * * ** *
36583256 TGAATCTT-ACTTTCCAAGCGGT-GCAGTGGAA-CAGATTAAAGCTACAACGA
1 AG-ATCTTGTC-TTCC-TGTATTGGCAG-CGAAGTAGATCGAAG--A-TA-GA
* * *** ** *
36583306 TGAATCTTG-CTTCCCTGACATT-GCAATTAAAAAGATCGAAGCT-GCA
1 AG-ATCTTGTCTT-CCTG-TATTGGCAGCGAAGTAGATCGAAGATAG-A
* * * * * * * * *
36583352 ACGGTAAATCCT-ACTTCC-CTAGTGGTACAGTGGAA-CAGATTGAAGCTACA
1 A--G---ATCTTGTCTTCCTGTATTGG--CAG-CGAAGTAGATCGAAGATAGA
* * * * * *** * *
36583402 ATGGCGAATCTTGT-TCCCCGACACT-GTAATTAATTAGA-CTGAAGATAGC
1 A----G-ATCTTGTCTTCCTG-TATTGGCAGCGAAGTAGATC-GAAGATAGA
* *
36583451 AGATCTTATCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCA
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG-A
* *
36583497 AG-TCTTGTCTTCCTGTATTGGCAGCAAAGTAGAT-GAAGATAGT
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGA
*
36583540 AGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCA
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG-A
* *
36583586 AG-TCTTGTCTTCCTGTATTGGCAGTGAAGTAGATTGAAGATAGCA
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG-A
* * * *
36583631 AG-TCTAGTCTTCCTGTATTGACAGTGAAGTAGA-CTGAAGATAGC
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGA
* * *
36583675 AGATCTTATCTTCCTGTATTGGCTGTGAAGTAGATCGAAGATAGCA
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG-A
* * *
36583721 AG-TCTAGTCTTCCTGTATTGACAGCGAAGTAGA-CTGAAGATAGT
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGA
*
36583765 AGATCTTGTCTTCCTGTATTGGCAGTGAAGT
1 AGATCTTGTCTTCCTGTATTGGCAGCGAAGT
36583796 TGTAACACCC
Statistics
Matches: 771, Mismatches: 144, Indels: 140
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.00
43 34 0.04
44 123 0.16
45 491 0.64
46 30 0.04
47 8 0.01
48 5 0.01
49 18 0.02
50 54 0.07
51 3 0.00
52 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (45 bp):
AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGA
Found at i:36583014 original size:90 final size:90
Alignment explanation
Indices: 36582764--36583163 Score: 570
Period size: 90 Copynumber: 4.4 Consensus size: 90
36582754 CTATACATTA
* * *
36582764 CAGATCTTATCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGTAAGTCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTA-TTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTATA
*
36582829 TTGGCAGCAAAGTAGACTGAAGATAA
65 TTGGCAGCAAAGTAGACTGAAGATAG
* * *
36582855 CAGATCTTGTCTTCCTGT-TTGACAGCGAAATAGATCGAAGATAGCAAGTCTTGTCTTTCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTATAT
36582919 TGGCAGCAAAGTAGACTGAAGATAG
66 TGGCAGCAAAGTAGACTGAAGATAG
* * * *
36582944 TAGATCTTGTCTTCTTGTATTGGCAGCGAAGTAGATCGAAGATAGC-AGACCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAG-TCTTGTCTTCCTATA
* *
36583008 TTGGCAGCAAAGTGGATTGAAGATAG
65 TTGGCAGCAAAGTAGACTGAAGATAG
* * *
36583034 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAACATAGTAAGTCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTATAT
* *
36583099 TGGCAGCGAAGTAGACAGAAGATAG
66 TGGCAGCAAAGTAGACTGAAGATAG
* * * *
36583124 CAGATCTTGTCTTCCTATACTGGCAGTGAAGCAGATCGAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
36583164 AGCACCAGCC
Statistics
Matches: 274, Mismatches: 32, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
89 83 0.30
90 172 0.63
91 19 0.07
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (90 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAGTCTTGTCTTCCTATAT
TGGCAGCAAAGTAGACTGAAGATAG
Found at i:36585219 original size:38 final size:37
Alignment explanation
Indices: 36585146--36585224 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
36585136 TATTACGAAA
* *
36585146 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
36585183 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
36585221 TCTT
1 TCTT
36585225 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:36585421 original size:47 final size:47
Alignment explanation
Indices: 36585343--36585539 Score: 268
Period size: 47 Copynumber: 4.1 Consensus size: 47
36585333 CCCTTCGGGA
* * * * * * *
36585343 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
36585390 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36585437 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36585486 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36585533 CTTATCA
1 CTTATCA
36585540 TAATTTAGAA
Statistics
Matches: 132, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
47 87 0.66
49 45 0.34
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36590499 original size:33 final size:33
Alignment explanation
Indices: 36590457--36590520 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
36590447 TAGAGTTACC
*
36590457 TTACACTACACCAAAACAGGCTTTTAGCGGCAT
1 TTACACTACAACAAAACAGGCTTTTAGCGGCAT
* *
36590490 TTACACTACAACAGAACAGGTTTTTAGCGGC
1 TTACACTACAACAAAACAGGCTTTTAGCGGC
36590521 GTTTTTTAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (33 bp):
TTACACTACAACAAAACAGGCTTTTAGCGGCAT
Found at i:36590531 original size:21 final size:21
Alignment explanation
Indices: 36590507--36590549 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
36590497 ACAACAGAAC
* *
36590507 AGGTTTTTAGCGGCGTTTTTT
1 AGGTCTTTAGCGGCGCTTTTT
36590528 AGGTCTTTAGCGGCGCTTTTT
1 AGGTCTTTAGCGGCGCTTTTT
36590549 A
1 A
36590550 ACGCCACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.14, G:0.28, T:0.47
Consensus pattern (21 bp):
AGGTCTTTAGCGGCGCTTTTT
Found at i:36590694 original size:42 final size:42
Alignment explanation
Indices: 36590620--36590805 Score: 178
Period size: 42 Copynumber: 4.4 Consensus size: 42
36590610 ACGTCGCTAA
* *
36590620 CTTTTGCGGCGCTTACATAAAAAAACGCCGCTAAAAATCATGTT
1 CTTTAGCGGCGCTT--AGAAAAAAACGCCGCTAAAAATCATGTT
*
36590664 CTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAAATCATGTT
* ** * * * *
36590706 CTTTAGCGGCGCTTCGGAGGAAAACGCCTCTAAAAGTAATGCT
1 CTTTAGCGGCGCTT-AGAAAAAAACGCCGCTAAAAATCATGTT
* ** * *
36590749 CTATAGCGGCGCTT-GTTCAAAAACGCCACTAAAAGT-AGTGTT
1 CTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAAATCA-TGTT
36590791 CTTTAGCGGCGCTTA
1 CTTTAGCGGCGCTTA
36590806 TTTCACAAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 72 0.60
43 33 0.28
44 13 0.11
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (42 bp):
CTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAAATCATGTT
Found at i:36590740 original size:85 final size:85
Alignment explanation
Indices: 36590641--36590804 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
36590631 CTTACATAAA
* * * *
36590641 AAAACGCCGCTAAAAATCATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCT-AAAGATCA-T
1 AAAACGCCGCTAAAAATAATGCTCTATAGCGGCGCTT-GTAAAAAAACGCCACTAAAAG-T-AGT
36590703 GTTCTTTAGCGGCGCTTCGGAGG
63 GTTCTTTAGCGGCGCTTCGGAGG
* * **
36590726 AAAACGCCTCTAAAAGTAATGCTCTATAGCGGCGCTTGTTCAAAAACGCCACTAAAAGTAGTGTT
1 AAAACGCCGCTAAAAATAATGCTCTATAGCGGCGCTTGTAAAAAAACGCCACTAAAAGTAGTGTT
36590791 CTTTAGCGGCGCTT
66 CTTTAGCGGCGCTT
36590805 ATTTCACAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
84 2 0.03
85 62 0.91
86 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (85 bp):
AAAACGCCGCTAAAAATAATGCTCTATAGCGGCGCTTGTAAAAAAACGCCACTAAAAGTAGTGTT
CTTTAGCGGCGCTTCGGAGG
Found at i:36596794 original size:9 final size:9
Alignment explanation
Indices: 36596780--36597030 Score: 140
Period size: 9 Copynumber: 29.8 Consensus size: 9
36596770 AAGTTATTTA
36596780 TTATGTAAG
1 TTATGTAAG
*
36596789 TTATGTAAC
1 TTATGTAAG
*
36596798 TTGTGTAAG
1 TTATGTAAG
36596807 TTATGTAAG
1 TTATGTAAG
* *
36596816 CTGTGTAAG
1 TTATGTAAG
*
36596825 TTGTGT-A-
1 TTATGTAAG
** *
36596832 TTATCAAAC
1 TTATGTAAG
36596841 TTATGTAAG
1 TTATGTAAG
*
36596850 TTGTGT-A-
1 TTATGTAAG
36596857 TTATGTAAG
1 TTATGTAAG
* *
36596866 TTACGTCAG
1 TTATGTAAG
*
36596875 TTGTGT-A-
1 TTATGTAAG
* *
36596882 TTATGAAAC
1 TTATGTAAG
36596891 TTATGTAAG
1 TTATGTAAG
*
36596900 TTATGT--C
1 TTATGTAAG
36596907 TTATGTAAG
1 TTATGTAAG
* *
36596916 TGATGTAAA
1 TTATGTAAG
*
36596925 ATATGT-A-
1 TTATGTAAG
36596932 TTATGTAAG
1 TTATGTAAG
*
36596941 TTATGTCAG
1 TTATGTAAG
* *
36596950 GTGTGT-A-
1 TTATGTAAG
*
36596957 TTATGTAAA
1 TTATGTAAG
36596966 TTATGT-A-
1 TTATGTAAG
36596973 TTATGTAAG
1 TTATGTAAG
*
36596982 TTATGTAAT
1 TTATGTAAG
*
36596991 TTGTGT-A-
1 TTATGTAAG
*
36596998 TTATGTAAC
1 TTATGTAAG
* *
36597007 TTATTTAAT
1 TTATGTAAG
36597016 TTATGTAAG
1 TTATGTAAG
36597025 -TATGTA
1 TTATGTA
36597031 TTATTCACTA
Statistics
Matches: 184, Mismatches: 42, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
7 38 0.21
8 20 0.11
9 126 0.68
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36596847 original size:25 final size:25
Alignment explanation
Indices: 36596769--36596972 Score: 142
Period size: 25 Copynumber: 8.1 Consensus size: 25
36596759 GATTTAGGAA
* * * *
36596769 TAAGTTATTTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGAAACTTATG
* * *
36596794 TAACTTGTGTAAGTTATGTAAGC-TGTG
1 TAAGTTGTGT-A-TTATG-AAACTTATG
*
36596821 TAAGTTGTGTATTATCAAACTTATG
1 TAAGTTGTGTATTATGAAACTTATG
* * *
36596846 TAAGTTGTGTATTATGTAAGTTACG
1 TAAGTTGTGTATTATGAAACTTATG
*
36596871 TCAGTTGTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGAAACTTATG
* * * * *
36596896 TAAGTTATGTCTTATGTAAGTGATG
1 TAAGTTGTGTATTATGAAACTTATG
** * * *
36596921 TAAAATATGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGAAACTTATG
* *
36596946 TCAGGTGTGTATTATGTAAA-TTATG
1 TAAGTTGTGTATTATG-AAACTTATG
36596971 TA
1 TA
36596973 TTATGTAAGT
Statistics
Matches: 139, Mismatches: 35, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
24 3 0.02
25 114 0.82
26 4 0.03
27 17 0.12
28 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (25 bp):
TAAGTTGTGTATTATGAAACTTATG
Found at i:36596886 original size:41 final size:41
Alignment explanation
Indices: 36596841--36597029 Score: 164
Period size: 41 Copynumber: 4.8 Consensus size: 41
36596831 ATTATCAAAC
* * *
36596841 TTATGTAAGTTGTGTATTATGTAAGTTACGTCAGTTGTGTA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
36596882 TTATG--AA--A---CTTATGTAAGTTATGTC--TTATGTAA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGT-A
* * *
36596915 GTGATGTAAAATATGTATTATGTAAGTTATGTCAGGTGTGTA
1 -TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
36596957 TTATGTAAATTATGTATTATGTAAGTTATGTAATTTGTGTA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
36596998 TTATGTAACTTATTTAATTTATGTAAG-TATGT
1 TTATGTAAATTATGT-A-TTATGTAAGTTATGT
36597030 ATTATTCACT
Statistics
Matches: 119, Mismatches: 16, Indels: 25
0.74 0.10 0.16
Matches are distributed among these distances:
32 5 0.04
33 1 0.01
34 19 0.16
36 2 0.02
38 1 0.01
39 1 0.01
41 70 0.59
42 7 0.06
43 13 0.11
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (41 bp):
TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
Found at i:36596909 original size:16 final size:16
Alignment explanation
Indices: 36596891--36596988 Score: 83
Period size: 16 Copynumber: 6.0 Consensus size: 16
36596881 ATTATGAAAC
*
36596891 TTATGTAAGTTATGTC
1 TTATGTAAGTTATGTA
*
36596907 TTATGTAAGTGATGTAAA
1 TTATGTAAGTTATGT--A
*
36596925 ATATGT-A-TTATGTAA
1 TTATGTAAGTTATGT-A
* * *
36596940 GTTATGTCAGGTGTGTA
1 -TTATGTAAGTTATGTA
*
36596957 TTATGTAAATTATGTA
1 TTATGTAAGTTATGTA
36596973 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
36596989 ATTTGTGTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
15 2 0.03
16 51 0.78
17 3 0.05
18 9 0.14
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:36596972 original size:50 final size:50
Alignment explanation
Indices: 36596769--36596972 Score: 201
Period size: 50 Copynumber: 4.0 Consensus size: 50
36596759 GATTTAGGAA
* * * * * * *
36596769 TAAGTTATTTATTATGTAAGTTATGTAACTTGTGTAAGTTATGTAAGCTGTG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGT-A-TTATGTAAGTTATG
* *
36596821 TAAGTTGTGTATTATCAAACTTATGTAAGTTGTGTATTATGTAAGTTACG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
* * * *
36596871 TCAGTTGTGTATTATGAAACTTATGTAAGTTATGTCTTATGTAAGTGATG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
** * * * * * *
36596921 TAAAATATGTATTATGTAAGTTATGTCAGGTGTGTATTATGTAAATTATG
1 TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
36596971 TA
1 TA
36596973 TTATGTAAGT
Statistics
Matches: 125, Mismatches: 27, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
50 95 0.76
51 1 0.01
52 29 0.23
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (50 bp):
TAAGTTGTGTATTATGAAACTTATGTAAGTTGTGTATTATGTAAGTTATG
Found at i:36596985 original size:25 final size:25
Alignment explanation
Indices: 36596957--36597022 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
36596947 CAGGTGTGTA
* *
36596957 TTATGTAAATTATGTATTATGTAAG
1 TTATGTAATTTATGTATTATGTAAC
*
36596982 TTATGTAATTTGTGTATTATGTAAC
1 TTATGTAATTTATGTATTATGTAAC
*
36597007 TTATTTAATTTATGTA
1 TTATGTAATTTATGTA
36597023 AGTATGTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.53
Consensus pattern (25 bp):
TTATGTAATTTATGTATTATGTAAC
Found at i:36597181 original size:24 final size:24
Alignment explanation
Indices: 36597135--36597183 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36597125 TTATTATGTA
* ** *
36597135 AGTTATTTATTATGTTTGTTATAT
1 AGTTATGTATTATGTAAGATATAT
36597159 AGTTATGTATTATGTAAGATATAT
1 AGTTATGTATTATGTAAGATATAT
36597183 A
1 A
36597184 AGCTTATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (24 bp):
AGTTATGTATTATGTAAGATATAT
Done.