Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 125 of 228
Found at i:36886099 original size:20 final size:20
Alignment explanation
Indices: 36886053--36886099 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
36886043 AGCTCGTTTC
*
36886053 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
36886073 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
36886093 CAGCTCA
1 CAGCTCA
36886100 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:36888899 original size:28 final size:28
Alignment explanation
Indices: 36888861--36889042 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
36888851 TAAATTGTAC
*
36888861 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36888889 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36888917 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
36888945 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36888973 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36889001 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
36889028 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36889043 GACTTAATAT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 125 0.84
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:36890613 original size:40 final size:40
Alignment explanation
Indices: 36890566--36890913 Score: 529
Period size: 40 Copynumber: 8.7 Consensus size: 40
36890556 CAAGCTCAAT
* * * * *
36890566 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36890606 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
36890646 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * * * *
36890686 CGCCATCGGGTCTTAGCCCGGATATCTCAGTTCGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
36890726 TGCCTTCGGGTCTTATCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36890766 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36890806 TGCCTTCGGGTCTTATCCCGGA-ATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
36890845 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
36890885 TGCCTTCGGGTCTTAGCCCGGATATATCA
1 TGCCTTCGGGTCTTAGCCCGGATATATCA
36890914 TTCAAATGCT
Statistics
Matches: 284, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
39 41 0.14
40 242 0.85
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:36902016 original size:18 final size:18
Alignment explanation
Indices: 36901974--36902016 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
36901964 GCCCATTCCG
* *
36901974 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
36901992 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
36902010 AAGTATG
1 AAGTATG
36902017 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:36902547 original size:28 final size:28
Alignment explanation
Indices: 36902465--36902641 Score: 232
Period size: 28 Copynumber: 6.4 Consensus size: 28
36902455 GAGATTGGCG
* * * *
36902465 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
36902494 CTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
36902521 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
36902549 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
36902577 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
36902605 CTAAGTATGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
36902632 CTGAGTGTGC
1 CTAAGTGTGC
36902642 AGACTTATTA
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
27 42 0.32
28 80 0.60
29 11 0.08
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:36906854 original size:18 final size:18
Alignment explanation
Indices: 36906831--36906908 Score: 104
Period size: 18 Copynumber: 4.3 Consensus size: 18
36906821 TTTGGTTAAA
*
36906831 AATTAACCGAATTACCTG
1 AATTAACCGAATTAACTG
36906849 AATTAACCGAATTAACTG
1 AATTAACCGAATTAACTG
* *
36906867 GATTATCCGAATTAACTG
1 AATTAACCGAATTAACTG
*
36906885 AATT-ACCAGAATTAACGG
1 AATTAACC-GAATTAACTG
36906903 AATTAA
1 AATTAA
36906909 TTGAATTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
17 2 0.04
18 49 0.94
19 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (18 bp):
AATTAACCGAATTAACTG
Found at i:36906905 original size:9 final size:9
Alignment explanation
Indices: 36906831--36906908 Score: 79
Period size: 9 Copynumber: 8.7 Consensus size: 9
36906821 TTTGGTTAAA
36906831 AATTAACCG
1 AATTAACCG
36906840 AATT-ACCTG
1 AATTAACC-G
36906849 AATTAACCG
1 AATTAACCG
*
36906858 AATTAACTG
1 AATTAACCG
* *
36906867 GATTATCCG
1 AATTAACCG
*
36906876 AATTAACTG
1 AATTAACCG
36906885 AATT-ACCAG
1 AATTAACC-G
*
36906894 AATTAACGG
1 AATTAACCG
36906903 AATTAA
1 AATTAA
36906909 TTGAATTGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
8 5 0.09
9 46 0.82
10 5 0.09
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:36911389 original size:10 final size:10
Alignment explanation
Indices: 36911376--36911421 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
36911366 CTGTGACTAA
*
36911376 ATGTGGTTAT
1 ATGTGATTAT
*
36911386 ATGTAATTAT
1 ATGTGATTAT
36911396 ATGTGATTAT
1 ATGTGATTAT
36911406 ATGTGATTGAT
1 ATGTGATT-AT
36911417 ATGTG
1 ATGTG
36911422 TTGGAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
10 25 0.78
11 7 0.22
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (10 bp):
ATGTGATTAT
Found at i:36930264 original size:104 final size:105
Alignment explanation
Indices: 36930018--36930285 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
36930008 TTGTATATAA
** *
36930018 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
36930082 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
36930123 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
36930188 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
36930227 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
36930286 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 85 0.55
105 68 0.44
106 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:36936167 original size:43 final size:42
Alignment explanation
Indices: 36936069--36936187 Score: 129
Period size: 41 Copynumber: 2.9 Consensus size: 42
36936059 CTCTGAGGTG
* *
36936069 TGATTT-CATGTAAGACCATGTCTGGGACATTGCATCGTATA
1 TGATTTACATGTAAGACCATGTCTAGGACATGGCATCGTATA
* *
36936110 TGATTTA-GTGTAAGACCCTGTCTAGGACAATGGCATCG-ATA
1 TGATTTACATGTAAGACCATGTCTAGGAC-ATGGCATCGTATA
* *
36936151 T-ATTATAACATGTAAGACCATATCTAGGATATGGCAT
1 TGATT-T-ACATGTAAGACCATGTCTAGGACATGGCAT
36936188 TGTACGAGCT
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
40 3 0.05
41 29 0.45
42 16 0.25
43 17 0.26
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (42 bp):
TGATTTACATGTAAGACCATGTCTAGGACATGGCATCGTATA
Found at i:36943905 original size:32 final size:32
Alignment explanation
Indices: 36943854--36943926 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
36943844 CCAGAGTTGT
* * *
36943854 GCCATAAAGGCTATTCTTTATATCCAGTACTG
1 GCCACAAAGACTATCCTTTATATCCAGTACTG
*
36943886 GCCACAAAGACTATCCTTTATATCCAGTACTT
1 GCCACAAAGACTATCCTTTATATCCAGTACTG
36943918 GCCACAAAG
1 GCCACAAAG
36943927 GCTTTCCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (32 bp):
GCCACAAAGACTATCCTTTATATCCAGTACTG
Found at i:36943977 original size:93 final size:93
Alignment explanation
Indices: 36943818--36943996 Score: 225
Period size: 93 Copynumber: 1.9 Consensus size: 93
36943808 CTTTACATTT
* * * *
36943818 AGTACTCGCCACAAAGGCTTTCTTGTCCAGAGTTGTGCCATAAAGGCTATTCTTTATATCCAGTA
1 AGTACTCGCCACAAAGGCTTTCCTATCCAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTA
**
36943883 CTGGCCACAAAGACTATCCTTTATATCC
66 CTCACCACAAAGACTATCCTTTATATCC
* * * * *
36943911 AGTACTTGCCACAAAGGCTTTCCTATCTAGAGTTGTTCCACAAGGGCTATCCTTTATAT-TAGGT
1 AGTACTCGCCACAAAGGCTTTCCTATCCAGAGTTGTGCCACAAAGGCTATCCTTTATATCCA-GT
* *
36943975 ACTCACCACAAAGGCTTTCCTT
65 ACTCACCACAAAGACTATCCTT
36943997 CTCCTAGTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (93 bp):
AGTACTCGCCACAAAGGCTTTCCTATCCAGAGTTGTGCCACAAAGGCTATCCTTTATATCCAGTA
CTCACCACAAAGACTATCCTTTATATCC
Found at i:36944396 original size:27 final size:28
Alignment explanation
Indices: 36944366--36944420 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
36944356 TAAACACAAG
* *
36944366 CATACCTTAACCTCAAG-GTTCATGTTT
1 CATACCTTAACCACAAGACTTCATGTTT
* *
36944393 CATACTTTGACCACAAGACTTCATGTTT
1 CATACCTTAACCACAAGACTTCATGTTT
36944421 TCCATACATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.36
Consensus pattern (28 bp):
CATACCTTAACCACAAGACTTCATGTTT
Found at i:36944934 original size:22 final size:22
Alignment explanation
Indices: 36944906--36944950 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
36944896 AACATTCTTC
* *
36944906 TTAACTCAACCGAAGTGTCCAT
1 TTAACTCAACCCAAGTCTCCAT
36944928 TTAACTCAACCCAAGTCTCCAT
1 TTAACTCAACCCAAGTCTCCAT
36944950 T
1 T
36944951 GGAACTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (22 bp):
TTAACTCAACCCAAGTCTCCAT
Found at i:36956784 original size:22 final size:24
Alignment explanation
Indices: 36956759--36956804 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
36956749 GGCCGGATTC
36956759 CCCTTC-CCCCTCCCT-TCTCTCT
1 CCCTTCTCCCCTCCCTCTCTCTCT
* *
36956781 CCCTTCTCTCTTCCCTCTCTCTCT
1 CCCTTCTCCCCTCCCTCTCTCTCT
36956805 TCTTTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 7 0.35
24 7 0.35
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (24 bp):
CCCTTCTCCCCTCCCTCTCTCTCT
Found at i:36956801 original size:13 final size:12
Alignment explanation
Indices: 36956769--36956806 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
36956759 CCCTTCCCCC
36956769 TCCCTTCTCTC-
1 TCCCTTCTCTCT
36956780 TCCCTTCTCTCT
1 TCCCTTCTCTCT
36956792 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
36956805 TC
1 TC
36956807 TTTTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:36957295 original size:3 final size:3
Alignment explanation
Indices: 36957271--36957341 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
36957261 AATATCCTCG
* * * *
36957271 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
36957318 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
36957342 GTACGCGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:36957338 original size:23 final size:22
Alignment explanation
Indices: 36957283--36957344 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
36957273 ATTTTTATAT
*
36957283 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
36957304 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
36957326 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
36957345 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:36957351 original size:23 final size:23
Alignment explanation
Indices: 36957307--36957352 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36957297 GTATTACTAT
**
36957307 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
36957330 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
36957353 CATGTATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:36959142 original size:22 final size:22
Alignment explanation
Indices: 36959117--36959158 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
36959107 TCTTTAAAAA
36959117 ATTAATAATGT-TAATAAATTGG
1 ATTAAT-ATGTGTAATAAATTGG
36959139 ATTAATATGTGTAATAAATT
1 ATTAATATGTGTAATAAATT
36959159 TTAAATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (22 bp):
ATTAATATGTGTAATAAATTGG
Found at i:36961838 original size:11 final size:11
Alignment explanation
Indices: 36961822--36961851 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
36961812 ATTACTCAAT
*
36961822 ATATATTTTTA
1 ATATATTTTAA
36961833 ATATATTTTAA
1 ATATATTTTAA
36961844 ATATATTT
1 ATATATTT
36961852 CATTAATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATATTTTAA
Found at i:36962117 original size:2 final size:2
Alignment explanation
Indices: 36962110--36962139 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36962100 TTCAAACTAA
*
36962110 CT CT CT CT CT CG CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
36962140 TTTTTGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (2 bp):
CT
Found at i:36966073 original size:36 final size:37
Alignment explanation
Indices: 36966032--36966114 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 37
36966022 ATGATGACTG
* * *
36966032 ATGTGAAAGTGA-ATATGAGGGTGTGTTGTTCATCCC
1 ATGTGAAAGTGATATATGAGGGTATATTATTCATCCC
* * *
36966068 ATGTGACAGT-ATATATGTGGGTATATTATTCATGCC
1 ATGTGAAAGTGATATATGAGGGTATATTATTCATCCC
36966104 ATGTGAAAGTG
1 ATGTGAAAGTG
36966115 TTTATAATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
35 1 0.03
36 37 0.97
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.35
Consensus pattern (37 bp):
ATGTGAAAGTGATATATGAGGGTATATTATTCATCCC
Found at i:36969392 original size:13 final size:14
Alignment explanation
Indices: 36969361--36969389 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36969351 ATAAAATATA
36969361 AATTTATTTTTAAT
1 AATTTATTTTTAAT
36969375 AATTTATTTTTAAT
1 AATTTATTTTTAAT
36969389 A
1 A
36969390 TTTCATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
AATTTATTTTTAAT
Found at i:36974234 original size:9 final size:9
Alignment explanation
Indices: 36974217--36974253 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
36974207 TGAGTTTTCG
36974217 AATTCGAAT
1 AATTCGAAT
*
36974226 AACTCGAAT
1 AATTCGAAT
36974235 AATTCGAAT
1 AATTCGAAT
36974244 AATTCGAAT
1 AATTCGAAT
36974253 A
1 A
36974254 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36974501 original size:30 final size:31
Alignment explanation
Indices: 36974467--36974526 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
36974457 AAACCTTTTA
36974467 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAATTTTTACTCCCTTCCCAC
* *
36974497 TTTTCCCCTAAAATTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAATTTTTACTCCCTTCCCA
36974527 TCCCACCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAATTTTTACTCCCTTCCCAC
Found at i:36978441 original size:54 final size:54
Alignment explanation
Indices: 36978339--36978443 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
36978329 CTTATTATTT
* * *
36978339 CAAGTCAATGAGTTACATGGTCTAGCACACGGCATGCGACATGGTTGTGTGTCG
1 CAAGTCAAAGAGTTACATGGTCTAGCACACGGCATGCGACACGATTGTGTGTCG
** *
36978393 CAAGTCAAAGAGTTACATGGTCTAGCACACGGTTTGTGACACGATTGTGTG
1 CAAGTCAAAGAGTTACATGGTCTAGCACACGGCATGCGACACGATTGTGTG
36978444 ACCTAAATCA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (54 bp):
CAAGTCAAAGAGTTACATGGTCTAGCACACGGCATGCGACACGATTGTGTGTCG
Found at i:36978460 original size:54 final size:54
Alignment explanation
Indices: 36978343--36978463 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
36978333 TTATTTCAAG
* * * *
36978343 TCAATGAGTTACATGGTCTAGCACACGGCATGCGACATGGTTGTGTGTCGCAAG
1 TCAATGAGTTACATGGTCTAGCACACGGCATGCGACACGATTGTGTGACGCAAA
* ** *
36978397 TCAAAGAGTTACATGGTCTAGCACACGGTTTGTGACACGATTGTGTGAC-CTAAA
1 TCAATGAGTTACATGGTCTAGCACACGGCATGCGACACGATTGTGTGACGC-AAA
*
36978451 TCAGTGAGTTACA
1 TCAATGAGTTACA
36978464 CGGTTTAAGA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 55 0.98
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (54 bp):
TCAATGAGTTACATGGTCTAGCACACGGCATGCGACACGATTGTGTGACGCAAA
Found at i:36986645 original size:18 final size:18
Alignment explanation
Indices: 36986622--36986658 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
36986612 CACTGAGCTT
36986622 ATTAAGCTCACCCCCTCA
1 ATTAAGCTCACCCCCTCA
*
36986640 ATTAAGCTCACGCCCTCA
1 ATTAAGCTCACCCCCTCA
36986658 A
1 A
36986659 ACTTTGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.41, G:0.08, T:0.22
Consensus pattern (18 bp):
ATTAAGCTCACCCCCTCA
Found at i:36986816 original size:26 final size:26
Alignment explanation
Indices: 36986778--36986827 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
36986768 TCATGCTATA
* *
36986778 TGGACTTTAATTTTGGGACTTTGGTT
1 TGGACTTTAATTTAGGAACTTTGGTT
* *
36986804 TGGATTTTGATTTAGGAACTTTGG
1 TGGACTTTAATTTAGGAACTTTGG
36986828 ATAATATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.18, C:0.06, G:0.28, T:0.48
Consensus pattern (26 bp):
TGGACTTTAATTTAGGAACTTTGGTT
Found at i:36989467 original size:47 final size:47
Alignment explanation
Indices: 36989416--36989775 Score: 585
Period size: 47 Copynumber: 7.6 Consensus size: 47
36989406 ACAGTGTGTA
*
36989416 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36989463 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36989512 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
36989559 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
36989606 AACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
36989655 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
36989702 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
36989749 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
36989776 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
47 202 0.69
49 92 0.31
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36989624 original size:96 final size:94
Alignment explanation
Indices: 36989416--36989775 Score: 585
Period size: 96 Copynumber: 3.8 Consensus size: 94
36989406 ACAGTGTGTA
*
36989416 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
36989481 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
36989512 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
36989577 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
36989606 AACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
36989671 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
36989702 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
36989767 TGTGATAAG
66 TGTGATAAG
36989776 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 100 0.40
96 149 0.60
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:36989672 original size:143 final size:143
Alignment explanation
Indices: 36989410--36989775 Score: 621
Period size: 143 Copynumber: 2.6 Consensus size: 143
36989400 GCCAAGACAG
*
36989410 TGTG-TAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
1 TGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
36989474 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36989539 GCCTAATGGCCGA
131 GCCTAATGGCCGA
*
36989552 TGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGT
1 TGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
36989617 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36989682 GCCTAATGGCCGA
131 GCCTAATGGCCGA
* * * * * * * *
36989695 TGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGT
1 TGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
36989760 GTATA-A-ATGTGATAAG
66 GTATATATATGTGATAAG
36989776 TCCCGAAGGG
Statistics
Matches: 212, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
141 10 0.05
142 5 0.02
143 197 0.93
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
TGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCCGA
Found at i:36989951 original size:37 final size:37
Alignment explanation
Indices: 36989894--36989972 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36989884 CCGAGCTCTA
* * *
36989894 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
36989931 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GTGTGGAGATTATGTCCGGGT
36989968 AAGAC
1 AAGAC
36989973 TTCGTTAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
Found at i:36993459 original size:13 final size:13
Alignment explanation
Indices: 36993441--36993465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36993431 AAATTATCCA
36993441 ACCCAACCCAATT
1 ACCCAACCCAATT
36993454 ACCCAACCCAAT
1 ACCCAACCCAAT
36993466 AAAACTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:36993503 original size:38 final size:39
Alignment explanation
Indices: 36993446--36993523 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
36993436 ATCCAACCCA
*
36993446 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
*
36993485 ACCCAATTA-GCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
36993523 A
1 A
36993524 ACTCTTAGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 28 0.76
39 9 0.24
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAAATAAAACTAAAGTCT
Found at i:36993675 original size:17 final size:17
Alignment explanation
Indices: 36993655--36993718 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
36993645 TTAATTTCAA
36993655 TAATTATGTAATGTTTT
1 TAATTATGTAATGTTTT
* **
36993672 TAATTATGTAGTGATTCA
1 TAATTATGTAATG-TTTT
* *
36993690 AAGACTTATGTAATATTTT
1 TA-A-TTATGTAATGTTTT
36993709 TAATTATGTA
1 TAATTATGTA
36993719 GTGATTCAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
17 19 0.54
18 4 0.11
19 4 0.11
20 8 0.23
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.50
Consensus pattern (17 bp):
TAATTATGTAATGTTTT
Found at i:36993749 original size:18 final size:19
Alignment explanation
Indices: 36993721--36993756 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
36993711 ATTATGTAGT
36993721 GATTCAATTCGGGTAATTC
1 GATTCAATTCGGGTAATTC
*
36993740 GATT-AATTCGGTTAATT
1 GATTCAATTCGGGTAATT
36993757 TTTAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (19 bp):
GATTCAATTCGGGTAATTC
Found at i:37001826 original size:3 final size:3
Alignment explanation
Indices: 37001820--37001899 Score: 81
Period size: 3 Copynumber: 26.7 Consensus size: 3
37001810 TTCAAAGAAG
* * * * *
37001820 ATA ATA ATA ATA ATA AGA ATA ATA AGA ATA A-G ATAA AGA ATA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* *
37001865 ATA ATT ATA ATA ATA ATA ATA ATA ATA ATG ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
37001900 GGCTGTAGAG
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
2 1 0.02
3 59 0.97
4 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:37004295 original size:3 final size:3
Alignment explanation
Indices: 37004287--37004325 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
37004277 ATTCAAAGAA
37004287 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37004326 GGCTGTAAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37018274 original size:38 final size:38
Alignment explanation
Indices: 37018199--37018277 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
37018189 TATACTAATG
* *
37018199 AGGTGCAGAGCGCAAATTATACTTCAGACGTTCCGATA
1 AGGTGCAGAGCGAAAATTATACTTCAGACATTCCGATA
* *
37018237 AGGTGCAGAGCGAAAATTATACTT-TGAACATTTCGATA
1 AGGTGCAGAGCGAAAATTATACTTCAG-ACATTCCGATA
37018275 AGG
1 AGG
37018278 CATTGGGTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
37 1 0.03
38 35 0.97
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (38 bp):
AGGTGCAGAGCGAAAATTATACTTCAGACATTCCGATA
Found at i:37020574 original size:42 final size:42
Alignment explanation
Indices: 37020489--37020671 Score: 208
Period size: 42 Copynumber: 4.4 Consensus size: 42
37020479 TGATTCAGTA
* * * *
37020489 CACCGGCACTT-AGCCTGCTAAACATATAGTCTGA-AATGTTT
1 CACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
* ** *
37020530 CACTGGCATTAAGCCAACTAGATGTAAAGTCTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
* * *
37020572 CACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
* *
37020614 CACCGACATTAAGCCTGCTGGACGTAAAGTCTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
* *
37020656 CACTGGCAATAAGCCT
1 CACCGGCATTAAGCCT
37020672 ACCAGGCACT
Statistics
Matches: 117, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
40 2 0.02
41 24 0.21
42 91 0.78
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (42 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGTTT
Found at i:37021618 original size:4 final size:4
Alignment explanation
Indices: 37021609--37021816 Score: 344
Period size: 4 Copynumber: 52.0 Consensus size: 4
37021599 AAAATAAAAT
* *
37021609 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37021657 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
37021705 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
37021753 ATAC GTAC ATAC ATCC ATAC ATAC ATAC ATAC ATGC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
37021801 ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC
37021817 TGATTTAATA
Statistics
Matches: 190, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 190 1.00
ACGTcount: A:0.46, C:0.25, G:0.03, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:37023912 original size:50 final size:50
Alignment explanation
Indices: 37023839--37024019 Score: 222
Period size: 50 Copynumber: 3.7 Consensus size: 50
37023829 ACATTAAGAG
*
37023839 GATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAA
1 GATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCAA
* * * *
37023887 GATGAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGA
1 GATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCAA
** * * *
37023937 GATGAGAGGTCCCCCGTAAGACCATATCTGGGACATGGCATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCAA
* * **
37023987 TATGGGAACTCCCATGTAAGACCATATCTGGGA
1 GATGAGAGGTCCCATGTAAGACCATATCTGGGA
37024020 TATGACATTG
Statistics
Matches: 114, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
48 7 0.06
50 107 0.94
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCAA
Found at i:37024031 original size:100 final size:100
Alignment explanation
Indices: 37023852--37024032 Score: 245
Period size: 100 Copynumber: 1.8 Consensus size: 100
37023842 GAGATCCCAT
* * * ** * *
37023852 GTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCTATGTAAGACCATGTCTG
1 GTAAGACCATATCTGGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTG
* *
37023917 GGACATGGCGTTGGCATCGAGATGAGAGGTCCCCC
66 GGACATGACATTGGCATCGAGATGAGAGGTCCCCC
* * *
37023952 GTAAGACCATATCTGGGACATGGCATGGGCACCTATATGGGAACTCCCATGTAAGACCATATCTG
1 GTAAGACCATATCTGGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTG
*
37024017 GGATATGACATTGGCA
66 GGACATGACATTGGCA
37024033 ATACAAGAAA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
100 68 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (100 bp):
GTAAGACCATATCTGGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTG
GGACATGACATTGGCATCGAGATGAGAGGTCCCCC
Found at i:37028906 original size:41 final size:40
Alignment explanation
Indices: 37028847--37029159 Score: 329
Period size: 41 Copynumber: 7.6 Consensus size: 40
37028837 AGTTAACTCT
* *
37028847 TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCC
1 TGAATTGCACATA-GTGCCCCTATTTGTACTTCGGTACCCC
** *
37028888 TGAATTGCGTATAGATGCCCATATTTGTACTTCGGTACCCC
1 TGAATTGCACATAG-TGCCCCTATTTGTACTTCGGTACCCC
* * *
37028929 TAAATTGCACATATGTGCCCCTATTTGTACTTCGATTCCCC
1 TGAATTGCACATA-GTGCCCCTATTTGTACTTCGGTACCCC
* *
37028970 TGAATTGCACAAAGGTGCCCCTATTTGTACTTCAGTACCCC
1 TGAATTGCACATA-GTGCCCCTATTTGTACTTCGGTACCCC
* ** * *
37029011 TGAATTGCACATACGTGCACCTGGTTGTACTTTGGTGCCCC
1 TGAATTGCACATA-GTGCCCCTATTTGTACTTCGGTACCCC
* * * *
37029052 TGAATTGCACATGCGTGCCCCTATTTGTACTTTGTTACCCT
1 TGAATTGCACAT-AGTGCCCCTATTTGTACTTCGGTACCCC
* * * * *
37029093 TGAATTGCACACACGTGCCCCTGTTTATACTCCAGTACCCC
1 TGAATTGCACATA-GTGCCCCTATTTGTACTTCGGTACCCC
*
37029134 TGAATAGCACATACGTGCCCCTATTT
1 TGAATTGCACATA-GTGCCCCTATTT
37029160 ACACTCTAGT
Statistics
Matches: 224, Mismatches: 44, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
41 223 1.00
42 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (40 bp):
TGAATTGCACATAGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:37029069 original size:21 final size:21
Alignment explanation
Indices: 37029007--37029073 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
37028997 TACTTCAGTA
*
37029007 CCCCTGAATTGCACATACGTG
1 CCCCTGAATTGCACATGCGTG
* * * *
37029028 CACCTG-GTTGTACTTTG-GTG
1 CCCCTGAATTGCAC-ATGCGTG
37029048 CCCCTGAATTGCACATGCGTG
1 CCCCTGAATTGCACATGCGTG
37029069 CCCCT
1 CCCCT
37029074 ATTTGTACTT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.28
Consensus pattern (21 bp):
CCCCTGAATTGCACATGCGTG
Found at i:37029070 original size:123 final size:123
Alignment explanation
Indices: 37028847--37029153 Score: 377
Period size: 123 Copynumber: 2.5 Consensus size: 123
37028837 AGTTAACTCT
* * ** **
37028847 TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTGAATTGCGTATA-GATGCCCATA
1 TGAATTGCACAAACGTGCCCCTATTTGTACTTCAGTACCCCTGAATTGCACATACG-TGCCCATA
* *
37028911 TTTGTACTTCGGTACCCCTAAATTGCACATATGTGCCCCTATTTGTACTTCGATT-CCCC
65 GTTGTACTTCGGTACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCG-TTACCCC
* *
37028970 TGAATTGCACAAAGGTGCCCCTATTTGTACTTCAGTACCCCTGAATTGCACATACGTGCACC-TG
1 TGAATTGCACAAACGTGCCCCTATTTGTACTTCAGTACCCCTGAATTGCACATACGTGC-CCATA
* * * * * *
37029034 GTTGTACTTTGGTGCCCCTGAATTGCACATGCGTGCCCCTATTTGTACTTTGTTACCCT
65 GTTGTACTTCGGTACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGTTACCCC
* * * * *
37029093 TGAATTGCACACACGTGCCCCTGTTTATACTCCAGTACCCCTGAATAGCACATACGTGCCC
1 TGAATTGCACAAACGTGCCCCTATTTGTACTTCAGTACCCCTGAATTGCACATACGTGCCC
37029154 CTATTTACAC
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
122 4 0.03
123 152 0.96
124 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.32
Consensus pattern (123 bp):
TGAATTGCACAAACGTGCCCCTATTTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCATAG
TTGTACTTCGGTACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGTTACCCC
Found at i:37044391 original size:13 final size:13
Alignment explanation
Indices: 37044373--37044400 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37044363 TGGAGATACA
37044373 TATGACGATTTCC
1 TATGACGATTTCC
37044386 TATGACGATTTCC
1 TATGACGATTTCC
37044399 TA
1 TA
37044401 GCCAATCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (13 bp):
TATGACGATTTCC
Found at i:37046247 original size:5 final size:5
Alignment explanation
Indices: 37046237--37046261 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37046227 TCATTAGAGC
37046237 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
37046262 CTTAGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:37050747 original size:33 final size:33
Alignment explanation
Indices: 37050705--37050953 Score: 119
Period size: 33 Copynumber: 7.3 Consensus size: 33
37050695 TAGATGCGGT
37050705 GGAATCAGCACTTAGCAACCACCAATGAATAGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGG
*
37050738 GGAATCAGCACTTAGCAACC-CC------TCGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGG
* *
37050764 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC---CA-A--T-GAATA-GG
* *
37050806 TGGAATCAACACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATAGG
* ** *
37050840 GGAATCAACACACAGCAACC-CC--T---TGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGG
* *
37050867 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC---CA-A--T-GAATA-GG
*
37050909 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATAGG
37050943 GGAATCAGCAC
1 GGAATCAGCAC
37050954 ACAACAACCC
Statistics
Matches: 167, Mismatches: 16, Indels: 66
0.67 0.06 0.27
Matches are distributed among these distances:
26 21 0.13
27 20 0.12
28 3 0.02
29 1 0.01
30 1 0.01
31 1 0.01
32 5 0.03
33 49 0.29
34 4 0.02
35 6 0.04
36 2 0.01
37 1 0.01
38 2 0.01
39 4 0.02
41 2 0.01
42 10 0.06
43 35 0.21
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.18
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATAGG
Found at i:37050765 original size:26 final size:26
Alignment explanation
Indices: 37050736--37050785 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
37050726 CCAATGAATA
37050736 GGGGAATCAGCACTTAGCAACCCCTC
1 GGGGAATCAGCACTTAGCAACCCCTC
37050762 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
37050786 CTTTCACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.34, G:0.24, T:0.14
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTC
Found at i:37050915 original size:103 final size:103
Alignment explanation
Indices: 37050599--37050966 Score: 614
Period size: 102 Copynumber: 3.6 Consensus size: 103
37050589 TAACCGTTAT
* *
37050599 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
* * *
37050664 GAATCAGCACTTAGCAACCCCC-TTCACATTTTAGATG
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* ** *
37050701 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCC-TCGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
37050765 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* *
37050803 CGGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
37050868 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
*
37050906 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAACAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
37050967 TATATGCAAT
Statistics
Matches: 246, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
101 26 0.11
102 120 0.49
103 100 0.41
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.18
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:37053180 original size:29 final size:28
Alignment explanation
Indices: 37053144--37053221 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37053134 TCATGAGATT
37053144 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37053174 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37053201 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
37053222 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37053439 original size:174 final size:174
Alignment explanation
Indices: 37053174--37053501 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
37053164 AAATTGTACA
*
37053174 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
37053239 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
37053304 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
37053348 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
37053413 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
37053478 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37053502 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37061322 original size:29 final size:28
Alignment explanation
Indices: 37061286--37061363 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37061276 TCATGAGATT
37061286 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37061316 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37061343 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
37061364 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37061581 original size:174 final size:174
Alignment explanation
Indices: 37061316--37061643 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
37061306 AAATTGTACA
*
37061316 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
37061381 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGAGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACCTTACCGAGTCAA
37061446 TTTTGGACAGCGGAAAAGGTAAGTGTGCAAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCAAACTTGAAATGCATG
* *
37061490 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
37061555 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACCTTACCGAGTCAA
37061620 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37061644 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGAGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCAAACTTGAAATGCATG
Found at i:37066201 original size:43 final size:43
Alignment explanation
Indices: 37066150--37066263 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
37066140 TGTGTTATCT
* *
37066150 TGTAAGACCACGTCTGGGACGTTGGCATCAACT-TGTGTTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ACTATGTGATTACA
*
37066193 TGTAAGACC-CTGTCTGGGACAG-TGGCATCATTATGTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCACTATGTGATTACA
* *
37066236 TGTAAAACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
37066264 TGTACGATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
42 4 0.07
43 55 0.90
44 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCACTATGTGATTACA
Found at i:37067298 original size:23 final size:23
Alignment explanation
Indices: 37067239--37067635 Score: 551
Period size: 23 Copynumber: 17.1 Consensus size: 23
37067229 TTGGGTATAT
37067239 TAAATGCTGTCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
*
37067262 TAAAATGCTGTCCACTTTGGTGTA
1 T-AAATGCTGTCCAATTTGGTGTA
* *
37067286 TAAATGCTATCCAATTTAGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
*
37067309 TATATGCTGTCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
*
37067332 TAAAATGCTGTCCAGTTTGGTGTA
1 T-AAATGCTGTCCAATTTGGTGTA
* *
37067356 TAAATGCTGTCCAAATTAGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
* *
37067379 TATATGCTATCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
* * * *
37067402 TAAATGTTATCCAATATAGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
*
37067425 TATATGCTGTCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
37067448 TAAAATGCTGTCCAATTTGGTGTA
1 T-AAATGCTGTCCAATTTGGTGTA
* *
37067472 TAAATGTTGTCCAATTTAGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
* *
37067495 TATATGTTGTCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
37067518 TAAATGCTGTCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
37067541 TAAATGCTGTCCAATTTGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
* *
37067564 TATATGCTGTCCAATTTGGTATA
1 TAAATGCTGTCCAATTTGGTGTA
* *
37067587 TATATGCTGTCCAATTGGGTGTA
1 TAAATGCTGTCCAATTTGGTGTA
* *
37067610 TAAATGCTGTCCGATTTGATGTA
1 TAAATGCTGTCCAATTTGGTGTA
37067633 TAA
1 TAA
37067636 CACTGTCCAA
Statistics
Matches: 331, Mismatches: 40, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
23 266 0.80
24 65 0.20
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.40
Consensus pattern (23 bp):
TAAATGCTGTCCAATTTGGTGTA
Found at i:37067444 original size:116 final size:116
Alignment explanation
Indices: 37067239--37067635 Score: 573
Period size: 116 Copynumber: 3.4 Consensus size: 116
37067229 TTGGGTATAT
* * *
37067239 TAAATGCTGTCCAATTTGGTGTATAAAATGCTGTCCACTTTGGTGTATAAATGCTATCCAATTTA
1 TAAATGCTGTCCAAATTAGTGTAT-AAATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTTA
*
37067304 GTGTATATATGCTGTCCAATTTGGTGTATAAAATGCTGTCCAGTTTGGTGTA
65 GTGTATATATGCTGTCCAATTTGGTGTATAAAATGCTGTCCAATTTGGTGTA
* * * *
37067356 TAAATGCTGTCCAAATTAGTGTATATATGCTATCCAATTTGGTGTATAAATGTTATCCAATATAG
1 TAAATGCTGTCCAAATTAGTGTATAAATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTTAG
37067421 TGTATATATGCTGTCCAATTTGGTGTATAAAATGCTGTCCAATTTGGTGTA
66 TGTATATATGCTGTCCAATTTGGTGTATAAAATGCTGTCCAATTTGGTGTA
* * * * * *
37067472 TAAATGTTGTCCAATTTAGTGTATATATGTTGTCCAATTTGGTGTATAAATGCTGTCCAATTTGG
1 TAAATGCTGTCCAAATTAGTGTATAAATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTTAG
* * *
37067537 TGTATAAATGCTGTCCAATTTGGTGTAT-ATATGCTGTCCAATTTGGTATA
66 TGTATATATGCTGTCCAATTTGGTGTATAAAATGCTGTCCAATTTGGTGTA
* * * *
37067587 TATATGCTGTCC-AATTGGGTGTATAAATGCTGTCCGATTTGATGTATAA
1 TAAATGCTGTCCAAATT-AGTGTATAAATGCTGTCCAATTTGGTGTATAA
37067636 CACTGTCCAA
Statistics
Matches: 252, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
114 3 0.01
115 57 0.23
116 170 0.67
117 22 0.09
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.40
Consensus pattern (116 bp):
TAAATGCTGTCCAAATTAGTGTATAAATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTTAG
TGTATATATGCTGTCCAATTTGGTGTATAAAATGCTGTCCAATTTGGTGTA
Found at i:37078091 original size:14 final size:14
Alignment explanation
Indices: 37078072--37078111 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
37078062 GAGTTAAAAG
37078072 AAGAAAGAAAAGAA
1 AAGAAAGAAAAGAA
*
37078086 AAGAAA-AAAATAAA
1 AAGAAAGAAAA-GAA
37078100 AAGAAAGAAAAG
1 AAGAAAGAAAAG
37078112 GAAATAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 4 0.18
14 14 0.64
15 4 0.18
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (14 bp):
AAGAAAGAAAAGAA
Found at i:37082461 original size:17 final size:17
Alignment explanation
Indices: 37082441--37082480 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
37082431 CTTTCAGCAC
37082441 CGCAACTTAATTACCAT
1 CGCAACTTAATTACCAT
* *
37082458 CGCAACTTATTTTCCAT
1 CGCAACTTAATTACCAT
*
37082475 CACAAC
1 CGCAAC
37082481 CTCCACCTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (17 bp):
CGCAACTTAATTACCAT
Found at i:37092652 original size:26 final size:26
Alignment explanation
Indices: 37092622--37092672 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37092612 ACCAATGAAC
*
37092622 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
37092648 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
37092673 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:37092712 original size:103 final size:104
Alignment explanation
Indices: 37092528--37092750 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
37092518 AATGGATATC
37092528 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
37092593 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
37092632 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
37092696 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
37092735 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
37092751 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:37101022 original size:45 final size:45
Alignment explanation
Indices: 37100950--37101040 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
37100940 CTCTGCTAAT
* * *
37100950 TCCTGATTATTCACTGAGTTTGGAATGAGCTCACCCACTCCTCTC
1 TCCTAATTATTCACTGAGTTCGCAATGAGCTCACCCACTCCTCTC
*
37100995 TCCTAATTATTCATTGAGTTCGCAATGAGCTCACCCACTCCTCTC
1 TCCTAATTATTCACTGAGTTCGCAATGAGCTCACCCACTCCTCTC
37101040 T
1 T
37101041 TACTTCGCAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (45 bp):
TCCTAATTATTCACTGAGTTCGCAATGAGCTCACCCACTCCTCTC
Found at i:37107147 original size:44 final size:44
Alignment explanation
Indices: 37107097--37107183 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
37107087 AAAAGATAAA
37107097 CATGACTATTAAGTTATTGGATTGAGAAATTGTTCAACAAAGGT
1 CATGACTATTAAGTTATTGGATTGAGAAATTGTTCAACAAAGGT
37107141 CATGACTATTAAGTTATTGGATTGAGAAATTGTTCAACAAAGG
1 CATGACTATTAAGTTATTGGATTGAGAAATTGTTCAACAAAGG
37107184 GGAATTAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (44 bp):
CATGACTATTAAGTTATTGGATTGAGAAATTGTTCAACAAAGGT
Found at i:37110256 original size:27 final size:27
Alignment explanation
Indices: 37110212--37110263 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
37110202 TGATTTAATT
*
37110212 TGTCTGAACTAAAAACATATATTAAAGA
1 TGTCTAAACTAAAAACATAT-TTAAAGA
*
37110240 TGTCTAAACT-AAGACATATTTAAA
1 TGTCTAAACTAAAAACATATTTAAA
37110264 ATATATATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 8 0.36
28 9 0.41
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31
Consensus pattern (27 bp):
TGTCTAAACTAAAAACATATTTAAAGA
Found at i:37110270 original size:38 final size:39
Alignment explanation
Indices: 37110223--37110296 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 39
37110213 GTCTGAACTA
37110223 AAAACATATATTAAAGATGT-CTAAACTAAGACATATTT
1 AAAACATATATTAAAGATGTCCTAAACTAAGACATATTT
* * *
37110261 AAAATATATATTGAAGATGTCCTAAACTATGACATA
1 AAAACATATATTAAAGATGTCCTAAACTAAGACATA
37110297 ACTAAAAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 18 0.56
39 14 0.44
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (39 bp):
AAAACATATATTAAAGATGTCCTAAACTAAGACATATTT
Found at i:37110303 original size:39 final size:38
Alignment explanation
Indices: 37110218--37110320 Score: 109
Period size: 38 Copynumber: 2.6 Consensus size: 38
37110208 AATTTGTCTG
37110218 AACTAAAAACATATATTAAAGATGTCTAAACTAAGACAT
1 AACT-AAAACATATATTAAAGATGTCTAAACTAAGACAT
** * * *
37110257 ATTTAAAATATATATTGAAGATGTCCTAAACTATGACAT
1 AACTAAAACATATATTAAAGATGT-CTAAACTAAGACAT
*
37110296 AACTAAAAACCGT-TATTAAAGATGT
1 AACT-AAAA-CATATATTAAAGATGT
37110321 TCAGATTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
38 18 0.35
39 17 0.33
40 15 0.29
41 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.30
Consensus pattern (38 bp):
AACTAAAACATATATTAAAGATGTCTAAACTAAGACAT
Found at i:37110358 original size:38 final size:39
Alignment explanation
Indices: 37110311--37110385 Score: 125
Period size: 38 Copynumber: 1.9 Consensus size: 39
37110301 AAAACCGTTA
*
37110311 TTAAAGATGTTCAGATTATGACATAATTAAA-ACTTATT
1 TTAAAGATGTTCAAATTATGACATAATTAAAGACTTATT
*
37110349 TTAATGATGTTCAAATTATGACATAATTAAAGACTTA
1 TTAAAGATGTTCAAATTATGACATAATTAAAGACTTA
37110386 AACTAATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 29 0.85
39 5 0.15
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.39
Consensus pattern (39 bp):
TTAAAGATGTTCAAATTATGACATAATTAAAGACTTATT
Found at i:37113511 original size:12 final size:12
Alignment explanation
Indices: 37113496--37113537 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
37113486 TCTTGCTTTC
37113496 TTTTTTTTTCAA
1 TTTTTTTTTCAA
* *
37113508 TTTTCTTTTC-T
1 TTTTTTTTTCAA
37113519 TTTTCTTTTTCAA
1 TTTT-TTTTTCAA
37113532 TTTTTT
1 TTTTTT
37113538 CTTTTTGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:37113515 original size:21 final size:20
Alignment explanation
Indices: 37113491--37113549 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 20
37113481 TTCCCTCTTG
37113491 CTTTCTTTTTTTTTCAATTTT
1 CTTTCTTTTTTTTTCAA-TTT
37113512 CTTTTCTTTTTCTTTTTCAATTT
1 C-TTTC-TTTT-TTTTTCAATTT
37113535 -TTTCTTTTTGTTTTC
1 CTTTCTTTTT-TTTTC
37113550 TTGCTCTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 1 0.03
20 9 0.26
21 5 0.15
22 4 0.12
23 7 0.21
24 8 0.24
ACGTcount: A:0.07, C:0.15, G:0.02, T:0.76
Consensus pattern (20 bp):
CTTTCTTTTTTTTTCAATTT
Found at i:37113551 original size:26 final size:24
Alignment explanation
Indices: 37113492--37113535 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
37113482 TCCCTCTTGC
37113492 TTTC-TTTT-TTTTTCAATTTTCT
1 TTTCTTTTTCTTTTTCAATTTTCT
37113514 TTTCTTTTTCTTTTTCAATTTT
1 TTTCTTTTTCTTTTTCAATTTT
37113536 TTCTTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.20
23 4 0.20
24 12 0.60
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTCTTTTTCTTTTTCAATTTTCT
Found at i:37125477 original size:39 final size:38
Alignment explanation
Indices: 37125396--37125478 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 38
37125386 TTGTCTGAAC
* *
37125396 TAAAGATATGTATTAATGATGTCTAAACTAGGACATATT
1 TAAA-ATATATATTAATGATGTCTAAACTAGGACATAAT
* * *
37125435 TAAAATATATATTTATGATGTCCTACACTATGACATAAT
1 TAAAATATATATTAATGATGT-CTAAACTAGGACATAAT
37125474 TAAAA
1 TAAAA
37125479 ACCTTTATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 15 0.39
39 23 0.61
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (38 bp):
TAAAATATATATTAATGATGTCTAAACTAGGACATAAT
Found at i:37125506 original size:39 final size:37
Alignment explanation
Indices: 37125463--37125552 Score: 94
Period size: 36 Copynumber: 2.4 Consensus size: 37
37125453 TGTCCTACAC
* *
37125463 TATGACATAATTAAAAACCTTTATTAAAGATGTT-TAGAT
1 TATGACATAATTAAAAA-C-ATATTAAAGATGTTCAAG-T
* * *
37125502 TATGATAAAATT-AAAACATATTAATGATGTTCAAGT
1 TATGACATAATTAAAAACATATTAAAGATGTTCAAGT
37125538 TATGACATAATTAAA
1 TATGACATAATTAAA
37125553 GACTTAAACT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
36 23 0.55
37 5 0.12
38 4 0.10
39 10 0.24
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (37 bp):
TATGACATAATTAAAAACATATTAAAGATGTTCAAGT
Found at i:37132993 original size:120 final size:120
Alignment explanation
Indices: 37132777--37133039 Score: 302
Period size: 120 Copynumber: 2.2 Consensus size: 120
37132767 TTGAATGCTG
* *
37132777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
37132841 TGTACGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTT-TGTACGAGATACTAAA
66 CGTACGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGT--GAGATACTAAA
* * * * **
37132897 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
37132960 TCGTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTACGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGTGAGATACTAAA
* *
37133016 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
37133040 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
119 32 0.26
120 77 0.64
121 12 0.10
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTACGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGTGAGATACTAAA
Found at i:37133021 original size:39 final size:40
Alignment explanation
Indices: 37132777--37133039 Score: 273
Period size: 40 Copynumber: 6.6 Consensus size: 40
37132767 TTGAATGCTG
* * * * * *
37132777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
37132817 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* * * * *
37132856 TTCCGGGTTAAGCCCCGAAGGCCTTTGTACGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
37132897 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
37132937 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
37132977 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
37133016 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37133040 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 22, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
39 36 0.18
40 150 0.77
41 10 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:37133059 original size:79 final size:79
Alignment explanation
Indices: 37132778--37133074 Score: 262
Period size: 80 Copynumber: 3.7 Consensus size: 79
37132768 TGAATGCTGT
* * * * **
37132778 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTAC-GAG-GACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * * *
37132841 TGTACGAGATAC-AAATT
63 CGTGCGAGTTACTAAA-A
* * * *
37132858 CCGGGTTAAGCCCCGAAGGCCTTTGTACGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
* *
37132923 TGCGAGTTATTAAAT
65 TGCGAGTTACTAAAA
* * * * *
37132938 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAG-GACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
37133002 TGTGAGTTACTAAAA
65 TGCGAGTTACTAAAA
* * * *
37133017 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGGA-CTAAATCCGGGTTAAGTCCCGAAGG
37133075 TACGTGATTT
Statistics
Matches: 181, Mismatches: 32, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
78 16 0.09
79 46 0.25
80 110 0.61
81 9 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGGACTAAATCCGGGTTAAGTCCCGAAGGCATTCGT
GCGAGTTACTAAAA
Found at i:37179359 original size:16 final size:17
Alignment explanation
Indices: 37179328--37179361 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37179318 TAATTCAGTC
*
37179328 CAAAATTCATACTTTTG
1 CAAAATTCACACTTTTG
37179345 CAAAATT-ACACTTTTG
1 CAAAATTCACACTTTTG
37179361 C
1 C
37179362 CCCTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (17 bp):
CAAAATTCACACTTTTG
Found at i:37181157 original size:14 final size:14
Alignment explanation
Indices: 37181138--37181174 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
37181128 GTTTGTTAAG
37181138 TTGGTATTTTTATA
1 TTGGTATTTTTATA
37181152 TTGGTATTTTTATA
1 TTGGTATTTTTATA
*
37181166 TTGATATTT
1 TTGGTATTT
37181175 AATAGAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.65
Consensus pattern (14 bp):
TTGGTATTTTTATA
Found at i:37191950 original size:27 final size:27
Alignment explanation
Indices: 37191912--37192618 Score: 732
Period size: 27 Copynumber: 26.3 Consensus size: 27
37191902 ATTCGTAGGC
37191912 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37191939 AAATGACTGAAATACCCTCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37191966 AAATGATCGAAATACCCTAGAAGGG-A
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
37191992 AAAGGACCGAAATA-CATCTGAAGGATA
1 AAATGACCGAAATACCCTC-GAAGGGTA
* *
37192019 AAATGGCCGAAATACCC-CTGAACGGTA
1 AAATGACCGAAATACCCTC-GAAGGGTA
* *
37192046 AAATAACCGAAATA-CCTCCAAAGGGTA
1 AAATGACCGAAATACCCT-CGAAGGGTA
* *
37192073 AAATAATCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
** *
37192100 AAATGATTGAAATACCTTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
** *
37192127 AAATGATAGAAATACCTTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
37192154 AAATGACCGAAATACCCCCGAAAGATA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37192181 AAATGACTG-AATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
37192207 AAATGACCAAAAGACCCT-GAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37192233 AAATGACCGAAATACCCCCGCAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
***
37192260 AAATGACCGAAATATTATCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37192287 AAATAACCAAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37192314 AAATGACAGAAATACCCCCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * * *
37192341 AAATGACTGAAATACCCTTGAAGGATT
1 AAATGACCGAAATACCCTCGAAGGGTA
* * **
37192368 AAATGACCGAAATACCTTTGAAAAGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
37192395 AAATGACCAAAATACCCTCAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37192422 AAATGACCAAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
37192449 GAATGACTGAAATACCCCCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * *
37192476 AAATGATCGAAATACCCCCAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
** *
37192503 AAATGA-TTAAA-ACACCTCCGAAAGGTA
1 AAATGACCGAAATAC-CCT-CGAAGGGTA
**
37192530 AAATGACTTAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
*
37192557 AAATGACCGAAATACCC-CCACAGGGTA
1 AAATGACCGAAATACCCTCGA-AGGGTA
* * *
37192584 AAATGATCGAAATACCCT-TATATGGTA
1 AAATGACCGAAATACCCTCGA-AGGGTA
37192611 AAATGACC
1 AAATGACC
37192619 ATTATACCCC
Statistics
Matches: 567, Mismatches: 99, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
25 4 0.01
26 70 0.12
27 478 0.84
28 13 0.02
29 2 0.00
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCGAAGGGTA
Found at i:37192971 original size:28 final size:28
Alignment explanation
Indices: 37192939--37193058 Score: 159
Period size: 28 Copynumber: 4.3 Consensus size: 28
37192929 GTTTCATTAT
* * *
37192939 CACACTGTTTCTGTTTTGGGTTAAGGCC
1 CACACTGTTACTGTATTGGGCTAAGGCC
* *
37192967 CACACTGTTACTTTAATGGGCTAAGGCC
1 CACACTGTTACTGTATTGGGCTAAGGCC
* *
37192995 CACACTGTTTCTGTATTGGGCTAACGCC
1 CACACTGTTACTGTATTGGGCTAAGGCC
* *
37193023 CACATTGTTACTGTATCGGGCTAAGGCC
1 CACACTGTTACTGTATTGGGCTAAGGCC
37193051 CACACTGT
1 CACACTGT
37193059 ACTATTACTG
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 78 1.00
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (28 bp):
CACACTGTTACTGTATTGGGCTAAGGCC
Found at i:37193025 original size:56 final size:56
Alignment explanation
Indices: 37192939--37193058 Score: 179
Period size: 56 Copynumber: 2.1 Consensus size: 56
37192929 GTTTCATTAT
* * * *
37192939 CACACTGTTTCTGTTTTGGGTTAAGGCCCACACTGTTACTTTAAT-GGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAACGCCCACACTGTTACTGT-ATCGGGCTAAGGCC
*
37192995 CACACTGTTTCTGTATTGGGCTAACGCCCACATTGTTACTGTATCGGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAACGCCCACACTGTTACTGTATCGGGCTAAGGCC
37193051 CACACTGT
1 CACACTGT
37193059 ACTATTACTG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 2 0.03
56 56 0.97
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (56 bp):
CACACTGTTTCTGTATTGGGCTAACGCCCACACTGTTACTGTATCGGGCTAAGGCC
Found at i:37211136 original size:25 final size:25
Alignment explanation
Indices: 37211107--37211156 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
37211097 ACGAATCCAT
37211107 AAAGTTTGATTATCTCCACAAATCA
1 AAAGTTTGATTATCTCCACAAATCA
37211132 AAAGTTTGATTATCTCCACAAATCA
1 AAAGTTTGATTATCTCCACAAATCA
37211157 GATTTCTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (25 bp):
AAAGTTTGATTATCTCCACAAATCA
Found at i:37223710 original size:16 final size:16
Alignment explanation
Indices: 37223666--37223711 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
37223656 TGTCAAAAGT
37223666 TTCCTATAGTTTCACA
1 TTCCTATAGTTTCACA
*
37223682 TTCC-ATAATTTTCACA
1 TTCCTAT-AGTTTCACA
37223698 TTCCTATAGTTTCA
1 TTCCTATAGTTTCA
37223712 AGGTCTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 2 0.08
16 22 0.85
17 2 0.08
ACGTcount: A:0.26, C:0.24, G:0.04, T:0.46
Consensus pattern (16 bp):
TTCCTATAGTTTCACA
Found at i:37225254 original size:25 final size:25
Alignment explanation
Indices: 37225203--37225260 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
37225193 TAGCTCGTGA
* *
37225203 GAGCATACCGATTTATAGCTCAAAT
1 GAGCATACCGATTCACAGCTCAAAT
* **
37225228 GATCATACCGATTCACAGCTCGTAT
1 GAGCATACCGATTCACAGCTCAAAT
37225253 GAGCATAC
1 GAGCATAC
37225261 ATGTACATGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (25 bp):
GAGCATACCGATTCACAGCTCAAAT
Found at i:37233844 original size:49 final size:49
Alignment explanation
Indices: 37233772--37233872 Score: 139
Period size: 49 Copynumber: 2.1 Consensus size: 49
37233762 GGGATTATCA
* * *
37233772 ATTGCAGCTCGTGAGAGCTTACCGAGTCTTAGCTCATATAAGCCTACCG
1 ATTGCACCTCGTGAAAGCTTACCGAGTCTCAGCTCATATAAGCCTACCG
* * * *
37233821 ATTGCACCTTGTGAAAGCTTACCGATTCTCAGCTCATATGAGCTTACCG
1 ATTGCACCTCGTGAAAGCTTACCGAGTCTCAGCTCATATAAGCCTACCG
37233870 ATT
1 ATT
37233873 TCTAGCTCGT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (49 bp):
ATTGCACCTCGTGAAAGCTTACCGAGTCTCAGCTCATATAAGCCTACCG
Found at i:37233888 original size:25 final size:24
Alignment explanation
Indices: 37233777--37233913 Score: 91
Period size: 25 Copynumber: 5.5 Consensus size: 24
37233767 TATCAATTGC
*
37233777 AGCTCGTGAGAGCTTACCGAGTCTT
1 AGCTCGTGAGAGCTTACCGATTC-T
* * *
37233802 AGCTCAT-ATAAGCCTACCGATTGC-
1 AGCTCGTGA-GAGCTTACCGATT-CT
* * *
37233826 ACCTTGTGAAAGCTTACCGATTCT
1 AGCTCGTGAGAGCTTACCGATTCT
*
37233850 CAGCTCAT-ATGAGCTTACCGATTTCT
1 -AGCTCGTGA-GAGCTTACCGA-TTCT
* * *
37233876 AGCTCGTGAGAGCATACTGATTCAC
1 AGCTCGTGAGAGCTTACCGATTC-T
37233901 AGCTCGTGAGAGC
1 AGCTCGTGAGAGC
37233914 ATAAATGTAC
Statistics
Matches: 87, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
23 1 0.01
24 21 0.24
25 59 0.68
26 6 0.07
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCTCGTGAGAGCTTACCGATTCT
Found at i:37249008 original size:28 final size:28
Alignment explanation
Indices: 37248945--37249152 Score: 341
Period size: 28 Copynumber: 7.5 Consensus size: 28
37248935 ATATTAAGTC
* * *
37248945 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37248972 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37249000 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37249027 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37249055 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37249083 CGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37249111 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
37249138 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37249153 GCACAATTTA
Statistics
Matches: 173, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 66 0.38
28 107 0.62
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:37249029 original size:55 final size:55
Alignment explanation
Indices: 37248945--37249152 Score: 353
Period size: 55 Copynumber: 3.8 Consensus size: 55
37248935 ATATTAAGTC
* * * *
37248945 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
37249000 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
37249055 CGCACACTTAGTGCTACATAGTCAAACTCGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACT
*
37249111 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
37249153 GCACAATTTA
Statistics
Matches: 145, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
55 91 0.63
56 54 0.37
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:37249141 original size:111 final size:110
Alignment explanation
Indices: 37248945--37249152 Score: 353
Period size: 111 Copynumber: 1.9 Consensus size: 110
37248935 ATATTAAGTC
*
37248945 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
37249010 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
66 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
* * * *
37249055 CGCACACTTAGTGCTACATAGTCAAACTCGTACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
37249120 AGTGCTACATAGTCAATTCGCACACTTAGTGCT
65 AGTGCTACATAGTCAACTCGCACACTTAGTGCT
37249153 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 20 0.22
111 71 0.78
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (110 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:37257367 original size:27 final size:28
Alignment explanation
Indices: 37257185--37257367 Score: 277
Period size: 27 Copynumber: 6.7 Consensus size: 28
37257175 ATATTAAGTC
* * *
37257185 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37257212 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37257240 CGCACAC-TAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37257266 CGCACAC-TAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37257293 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37257321 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37257348 CGCACACTTAGTGCTGCATA
1 CGCACACTTAGTGCTACATA
37257368 ATTTAAACCC
Statistics
Matches: 148, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
26 26 0.18
27 68 0.46
28 54 0.36
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:37280477 original size:47 final size:47
Alignment explanation
Indices: 37280414--37280746 Score: 522
Period size: 47 Copynumber: 7.1 Consensus size: 47
37280404 GAAATGATAG
*
37280414 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
37280461 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37280508 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
37280555 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37280602 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37280649 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
37280696 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37280743 TAAG
1 TAAG
37280747 TCCCGAAGGG
Statistics
Matches: 266, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 266 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:37282806 original size:43 final size:43
Alignment explanation
Indices: 37282758--37282860 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
37282748 TTGGTTTTCA
*
37282758 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGACTG
37282801 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGACTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGACTG
37282844 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
37282861 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGACTG
Found at i:37282877 original size:29 final size:28
Alignment explanation
Indices: 37282838--37282915 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
37282828 CACGGTTGTG
*
37282838 AGAC-TGGCACTAAGTGTGCGGGCTTGAA
1 AGACATGGCACTAAGTGTGCGAG-TTGAA
*
37282866 ATG-CATGGCACTAAGTGTGCGAGTTTAA
1 A-GACATGGCACTAAGTGTGCGAGTTGAA
37282894 AGAACATGGCACTAAGTGTGCG
1 AG-ACATGGCACTAAGTGTGCG
37282916 TGGTTGATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 1 0.02
28 7 0.16
29 36 0.82
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (28 bp):
AGACATGGCACTAAGTGTGCGAGTTGAA
Found at i:37283346 original size:40 final size:40
Alignment explanation
Indices: 37283223--37283418 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
37283213 TCGAATGATG
** *
37283223 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
37283263 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
37283303 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
37283343 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
37283383 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
37283419 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:37283359 original size:80 final size:81
Alignment explanation
Indices: 37283223--37283419 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
37283213 TCGAATGATG
**
37283223 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
37283285 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
37283303 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
37283367 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
37283383 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
37283420 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:37283610 original size:25 final size:25
Alignment explanation
Indices: 37283581--37283632 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
37283571 TGTGTATTAA
37283581 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* * *
37283606 TGAATAATTAGAGGCACTGTGTGTG
1 TGAATAATAAGAGGCACTATGTATG
37283631 TG
1 TG
37283633 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:37286872 original size:40 final size:42
Alignment explanation
Indices: 37286828--37287042 Score: 263
Period size: 47 Copynumber: 4.8 Consensus size: 42
37286818 GGCCTAATGG
*
37286828 CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-C-
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCA
37286868 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC--A
*
37286912 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAA
1 ---CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC--A
37286959 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 ---CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC--A
37287006 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 ---CCGATGTGATGAATGTGAAAGTGTATATATGTGA
37287043 CGGGGCCGAG
Statistics
Matches: 165, Mismatches: 3, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
40 38 0.23
41 1 0.01
47 126 0.76
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (42 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCA
Found at i:37286921 original size:47 final size:47
Alignment explanation
Indices: 37286868--37287093 Score: 344
Period size: 47 Copynumber: 4.8 Consensus size: 47
37286858 GTGATAAGGC
37286868 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
37286915 CCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
37286962 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*** * *
37287009 CCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * * * *
37287056 CCAACGTGATGGATGTGAAAGGGCATAAATGTGATAAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
37287094 TCCCTAAGGG
Statistics
Matches: 163, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 163 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
Found at i:37287057 original size:94 final size:91
Alignment explanation
Indices: 37286815--37287093 Score: 361
Period size: 94 Copynumber: 3.0 Consensus size: 91
37286805 GAAATGATAG
* * *
37286815 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA---TAAG-GCCCGATGTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAGGCCAAGTGGCCGATGTG
37286876 ATGAATGTGAAAGTGTATATATGTGA
66 ATGAATGTGAAAGTGTATATATGTGA
*
37286902 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAA-TGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG---TGAGGCC-AAGTGGCCGA
37286966 TGTGATGAATGTGAAAGTGTATATATGTGA
62 TGTGATGAATGTGAAAGTGTATATATGTGA
* * *
37286996 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA---GGCCAAGTGGCCGAT
* * * *
37287061 GTGATGGATGTGAAAGGGCATAAATGTGA
63 GTGATGAATGTGAAAGTGTATATATGTGA
37287090 TAAG
1 TAAG
37287094 TCCCTAAGGG
Statistics
Matches: 168, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
87 43 0.26
90 2 0.01
91 2 0.01
93 1 0.01
94 120 0.71
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (91 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAGGCCAAGTGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGA
Found at i:37287075 original size:141 final size:134
Alignment explanation
Indices: 37286815--37287076 Score: 380
Period size: 141 Copynumber: 1.9 Consensus size: 134
37286805 GAAATGATAG
*
37286815 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCCGATGTGATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCCGATGTGATGA
* * * *
37286880 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
37286945 GTAA
131 GTAA
37286949 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-C------CCGAT
** * *
37287014 GTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
59 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
37287077 GGCATAAATG
Statistics
Matches: 112, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
134 51 0.46
135 1 0.01
141 60 0.54
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.28
Consensus pattern (134 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCCGATGTGATGA
ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
GTAA
Found at i:37290904 original size:40 final size:40
Alignment explanation
Indices: 37290845--37290981 Score: 247
Period size: 40 Copynumber: 3.4 Consensus size: 40
37290835 GGTCCTGTGC
37290845 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
*
37290885 CTACCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
* *
37290925 CTAGCAGGCTTAATGCCGGTGAGCCTTACAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
37290965 CTAGCAGGCTTAATGCC
1 CTAGCAGGCTTAATGCC
37290982 AGTGTTCTGA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (40 bp):
CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
Found at i:37292066 original size:43 final size:43
Alignment explanation
Indices: 37292018--37292181 Score: 206
Period size: 43 Copynumber: 3.8 Consensus size: 43
37292008 TTTTTGATAA
* *
37292018 GTGTTTTCGTGAAAGACCACATCTGGGACATTGGCATCGACTT
1 GTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGACTT
*
37292061 GTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTT
1 GTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGACTT
**
37292104 GTGTTTTCGTGTAAGACC-CTGTCTGGGACAACGGCATCGA-TCT
1 GTGTTTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGACT-T
* * * * *
37292147 GTGGTTACATGTAAGATCACGTCTGGGACGTTGGC
1 GTGTTTTCGTGTAAGACCACGTCTGGGACATTGGC
37292182 GTTGTACGAA
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.02
43 102 0.97
44 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (43 bp):
GTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGACTT
Found at i:37296728 original size:3 final size:3
Alignment explanation
Indices: 37296641--37296708 Score: 50
Period size: 3 Copynumber: 22.0 Consensus size: 3
37296631 CTTTTTAATT
* * * *
37296641 TAA TAA TGA TAA AAA TAA TAAA TAAA TAAA TAA -AA GAGA -AA TAA TAG
1 TAA TAA TAA TAA TAA TAA T-AA T-AA T-AA TAA TAA TA-A TAA TAA TAA
37296688 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
37296709 ACTAATTAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
2 3 0.05
3 40 0.73
4 12 0.22
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:37298275 original size:44 final size:44
Alignment explanation
Indices: 37298199--37298570 Score: 301
Period size: 44 Copynumber: 8.5 Consensus size: 44
37298189 ATTTGCTCTT
* * ** * *
37298199 TGCAACTTTAGAGAGATAAGATCTA-TCACTTTAATCCGCTCCGC
1 TGCAACTTCAGGGAGATAAGAT-TATTGGCTTTAATCTGCTCCAC
*
37298243 TGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCAC
* *** * *
37298287 TGCAACTTCAGGGAGATAAGATTCGTCATCTTCAATCTGCCCCAC
1 TGCAACTTCAGGGAGATAAGATT-ATTGGCTTTAATCTGCTCCAC
* * *
37298332 TACAACTTCAAGGAGATAGGATTATTGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCAC
* * * * *
37298376 TGCAACTTGAGGGAGATAAGATTTACTT--ATTCAGTCTGCTCCGC
1 TGCAACTTCAGGGAGATAAGA-TTA-TTGGCTTTAATCTGCTCCAC
* * * * * * * *
37298420 TGAAACATCAGGGAGATAAGACTA---GATATGATCTACT-CTC
1 TGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCAC
* * * ** *
37298460 TGCAATTTTAGAGAGATAAGATT-TGTCACTTTAATCTGCTCCGC
1 TGCAACTTCAGGGAGATAAGATTAT-TGGCTTTAATCTGCTCCAC
* *
37298504 TGCAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCAC
*
37298548 TGCAACTTCAGGGAGATAGGATT
1 TGCAACTTCAGGGAGATAAGATT
37298571 TGTGGTTTTA
Statistics
Matches: 257, Mismatches: 60, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
40 19 0.07
41 7 0.03
43 12 0.05
44 178 0.69
45 39 0.15
46 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCAC
Found at i:37298542 original size:128 final size:127
Alignment explanation
Indices: 37298149--37298565 Score: 408
Period size: 128 Copynumber: 3.2 Consensus size: 127
37298139 GCTTGCTCAG
** * * ** * * *
37298149 TCTGCTCCGTTGCAACTTCAAGGAGATAAGAGTAGATGCGATTTGCTCTTTGCAACTTTAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATATGATCTACTCTCTGCAACTTTAGAGAG
* *
37298214 ATAAGATCTATCACTTTAATCCGCTCCGCTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
66 ATAAGAT-TTTCACTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
* * * * * * * * *
37298277 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTCATCTTCAATCTGCCCCACTACAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAG--AT-AT-GATCT-ACTCTCTGCAACTTTA
* ** * * *
37298342 -AGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTGAGGGAGATAAGATTTACTT--
61 GA-GAGATAAGATT-TTCACTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAGGA-TTA-TTGG
* * *
37298404 ATTCAG
122 CTTTAA
* * * *
37298410 TCTGCTCCGCTGAAACATCAGGGAGATAAGACTAGATATGATCTACTCTCTGCAATTTTAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATATGATCTACTCTCTGCAACTTTAGAGAG
*
37298475 ATAAGATTTGTCACTTTAATCTGCTCCGCTGCAACTTCAGAGAGATAGGATTATTGGCTTTAA
66 ATAAGATTT-TCACTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
37298538 TCTGCTCCACTGCAACTTCAGGGAGATA
1 TCTGCTCCACTGCAACTTCAGGGAGATA
37298566 GGATTTGTGG
Statistics
Matches: 224, Mismatches: 52, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
126 2 0.01
127 4 0.02
128 112 0.50
129 5 0.02
130 3 0.01
131 2 0.01
132 5 0.02
133 86 0.38
134 3 0.01
135 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (127 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATATGATCTACTCTCTGCAACTTTAGAGAG
ATAAGATTTTCACTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
Found at i:37299767 original size:47 final size:45
Alignment explanation
Indices: 37299711--37299821 Score: 132
Period size: 45 Copynumber: 2.4 Consensus size: 45
37299701 CAAGGTGCCC
* * ** *
37299711 TTTGCGGGTTTTCACCTTGGCCTCTTTTTTTTTGCCTCAAAGCACCA
1 TTTGTGGGTTTTCACCTTGG--TCTCTTTTTAAGACTCAAAGCACCA
* * *
37299758 TTTGTGGGTTTTCACCTTAGTCTCTTTTTAAGATTCAAAGCACCC
1 TTTGTGGGTTTTCACCTTGGTCTCTTTTTAAGACTCAAAGCACCA
37299803 TTTGTGGGTTTTCACCTTG
1 TTTGTGGGTTTTCACCTTG
37299822 ATCCCTCCTC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 37 0.67
47 18 0.33
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.44
Consensus pattern (45 bp):
TTTGTGGGTTTTCACCTTGGTCTCTTTTTAAGACTCAAAGCACCA
Found at i:37307291 original size:37 final size:37
Alignment explanation
Indices: 37307231--37307306 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
37307221 TATTACGAAA
* * *
37307231 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
37307268 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
37307305 TC
1 TC
37307307 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:37307505 original size:47 final size:47
Alignment explanation
Indices: 37307427--37308180 Score: 874
Period size: 47 Copynumber: 15.6 Consensus size: 47
37307417 CCCTTCGGGA
* * * * * *
37307427 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
37307474 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
37307521 CTTATCACGCATATACACTTTCATATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
37307568 CTTATCCCGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37307615 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37307664 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37307711 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37307758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37307805 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
37307852 CTTGTCACACATATACACTTTCACATTCATCATA-C--ACTTTCA--C
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* ** **
37307895 ATTCATCACATCGGCCAT-TAGGC-CTTATCACATATATACACTTTCACATTCATCACATCGGCC
1 CTT-ATCACAT-----ATATA--CACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA
37307958 ATTAGGC
45 ----GGC
*
37307965 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37308012 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37308059 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37308106 CTTATCACATATATACACTTTCACCTTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37308153 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
37308181 ATGGGTTTAA
Statistics
Matches: 623, Mismatches: 47, Indels: 72
0.84 0.06 0.10
Matches are distributed among these distances:
43 3 0.00
44 8 0.01
45 1 0.00
46 1 0.00
47 489 0.78
48 2 0.00
49 65 0.10
50 5 0.01
52 2 0.00
53 1 0.00
54 5 0.01
55 3 0.00
56 5 0.01
57 4 0.01
59 3 0.00
60 1 0.00
61 2 0.00
62 2 0.00
63 5 0.01
64 5 0.01
65 2 0.00
69 6 0.01
70 3 0.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37307848 original size:141 final size:141
Alignment explanation
Indices: 37307427--37308180 Score: 1008
Period size: 141 Copynumber: 5.2 Consensus size: 141
37307417 CCCTTCGGGA
** * * * * * * *
37307427 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
37307492 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCATATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
37307557 GGCCATTAAGC
131 GGCCATTAGGC
* * *
37307568 CTTATCCCGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
37307633 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
37307698 TCGGCCATTAGGC
129 TCGGCCATTAGGC
37307711 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
37307776 TTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
37307841 GGCCATTAGGC
131 GGCCATTAGGC
* * *
37307852 CTTGTCACACATATACACTTTCACATTCATCATACACTTTC-ACATTCATCACATCGGCCATTAG
1 CTTATCACACATATACACTTTCACATTCATC--ACA---TCGGC---CAT----TAGGCC-TTA-
* * *
37307916 GC-CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
52 TCACATAT-AT------ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
37307980 CACTTTCACATTCATCACATCGGCCATTAGGC
110 CACTTTCACATTCATCACATCGGCCATTAGGC
37308012 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
37308077 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACCTTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
37308142 GGCCATTAAGC
131 GGCCATTAGGC
*
37308153 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ACATATACACTTTCACAT
37308181 ATGGGTTTAA
Statistics
Matches: 545, Mismatches: 41, Indels: 52
0.85 0.06 0.08
Matches are distributed among these distances:
141 241 0.44
143 153 0.28
145 1 0.00
146 2 0.00
147 2 0.00
148 10 0.02
149 5 0.01
152 5 0.01
153 10 0.02
154 2 0.00
155 2 0.00
156 1 0.00
158 3 0.01
160 108 0.20
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:37307888 original size:19 final size:19
Alignment explanation
Indices: 37307864--37307902 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37307854 TGTCACACAT
37307864 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
37307883 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
37307902 A
1 A
37307903 CATCGGCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (19 bp):
ATACACTTTCACATTCATC
Found at i:37307893 original size:160 final size:160
Alignment explanation
Indices: 37307723--37308043 Score: 615
Period size: 160 Copynumber: 2.0 Consensus size: 160
37307713 TATCACACAT
37307723 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
* *
37307788 CACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
37307853 TTGTCACACATATACACTTTCACATTCATC
131 TTATCACACATATACACTTTCACATTCATC
37307883 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
37307948 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
37308013 TTATCACACATATACACTTTCACATTCATC
131 TTATCACACATATACACTTTCACATTCATC
37308043 A
1 A
37308044 CATCGGCCAT
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
160 158 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (160 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACACATATACACTTTCACATTCATC
Found at i:37307894 original size:113 final size:113
Alignment explanation
Indices: 37307770--37307996 Score: 436
Period size: 113 Copynumber: 2.0 Consensus size: 113
37307760 TATCACATAT
*
37307770 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
*
37307835 CACATCGGCCATTAGGCCTTGTCACACATATACACTTTCACATTCATC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
37307883 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
37307948 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
37307996 A
1 A
37307997 CATCGGCCAT
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 112 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (113 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
Found at i:37307896 original size:66 final size:66
Alignment explanation
Indices: 37307817--37307949 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
37307807 TGTCACATAT
*
37307817 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
37307882 C
66 C
*
37307883 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
37307948 C
66 C
37307949 A
1 A
37307950 CATCGGCCAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (66 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
C
Found at i:37308031 original size:207 final size:207
Alignment explanation
Indices: 37307676--37308090 Score: 776
Period size: 207 Copynumber: 2.0 Consensus size: 207
37307666 TATCACACAT
37307676 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
*
37307741 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
37307806 TTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACACATATACACT
131 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
37307871 TTCACATTCATC
196 TTCACATTCATC
*
37307883 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
37307948 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
37308013 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
131 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
37308078 TTCACATTCATC
196 TTCACATTCATC
37308090 A
1 A
37308091 CATCGGCCAT
Statistics
Matches: 202, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
207 202 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (207 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
TTCACATTCATC
Found at i:37308078 original size:254 final size:254
Alignment explanation
Indices: 37307629--37308137 Score: 955
Period size: 254 Copynumber: 2.0 Consensus size: 254
37307619 TCACATATAT
*
37307629 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
37307694 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
37307759 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATACACT
131 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
37307824 TTCACATTCATCACATCGGCCATTAGGCCTTGTCACACATATACACTTTCACATTCATC
196 TTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
*
37307883 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
37307948 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
37308013 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
131 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* *
37308078 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACCTTCATC
196 TTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
37308137 A
1 A
37308138 CATCGGCCAT
Statistics
Matches: 248, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
254 248 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (254 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATC
Found at i:37311524 original size:16 final size:17
Alignment explanation
Indices: 37311482--37311524 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
37311472 CATGTAATTC
37311482 ATACGTACCATCTTTCT
1 ATACGTACCATCTTTCT
37311499 ATACGTACCATCTTTCT
1 ATACGTACCATCTTTCT
*
37311516 -TAGGTACCA
1 ATACGTACCA
37311525 ATAAGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (17 bp):
ATACGTACCATCTTTCT
Found at i:37316145 original size:13 final size:13
Alignment explanation
Indices: 37316127--37316153 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37316117 CTTCGCAGTC
37316127 CAATACTTTCCTT
1 CAATACTTTCCTT
37316140 CAATACTTTCCTT
1 CAATACTTTCCTT
37316153 C
1 C
37316154 TTGGGCCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (13 bp):
CAATACTTTCCTT
Found at i:37332268 original size:28 final size:28
Alignment explanation
Indices: 37332205--37332417 Score: 351
Period size: 28 Copynumber: 7.7 Consensus size: 28
37332195 ATATTAAGTC
* * *
37332205 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37332232 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37332260 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37332287 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37332315 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
37332343 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37332371 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
37332398 CGCACACTTAGTGCTGCATA
1 CGCACACTTAGTGCTACATA
37332418 ATTTAAACCC
Statistics
Matches: 179, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 70 0.39
28 109 0.61
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Done.