Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 130 of 228
Found at i:38750104 original size:40 final size:39
Alignment explanation
Indices: 38750073--38750282 Score: 237
Period size: 40 Copynumber: 5.3 Consensus size: 39
38750063 GGACTAAGAT
*
38750073 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
38750112 CTCGAAGGCCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
1 C-CGAAGG-CATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
38750153 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
38750193 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
38750233 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTAGGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
38750272 CCGAAGGCATT
1 CCGAAGGCATT
38750283 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
39 38 0.24
40 109 0.70
41 9 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:38750238 original size:120 final size:120
Alignment explanation
Indices: 38750020--38750282 Score: 311
Period size: 120 Copynumber: 2.2 Consensus size: 120
38750010 TTGAATGCTG
* *
38750020 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
*
38750084 TGTGCGAGATACAAATTCCGGGTTAAGCCTCGAAGGCCATTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCTCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
38750140 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
38750203 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCC-CGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAG-CCTCGAAGGCATTGTGCGAGATACTAAA
* *
38750259 ACCGGGCTAGGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
38750283 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
119 39 0.32
120 72 0.59
121 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCTCGAAGGCATTGTGCGAGATACTAAA
Found at i:38750302 original size:79 final size:80
Alignment explanation
Indices: 38750021--38750317 Score: 225
Period size: 80 Copynumber: 3.7 Consensus size: 80
38750011 TGAATGCTGT
* ** * * * **
38750021 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
38750084 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* **
38750101 CCGGGTTAAG-CCTCGAAGGCCATT-GTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCC-CGAAGG-CATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCAT
* *
38750163 TCGTGCGAGTTATTAAAT
63 TCGTGCGAGTTACTAAAA
* ** * * *
38750181 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
38750245 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
38750260 CCGGGCTAGGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
38750318 TACGTGATTT
Statistics
Matches: 183, Mismatches: 24, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
78 15 0.08
79 53 0.29
80 102 0.56
81 11 0.06
82 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:38752164 original size:50 final size:50
Alignment explanation
Indices: 38751971--38752165 Score: 162
Period size: 50 Copynumber: 3.9 Consensus size: 50
38751961 GATAACAACA
* * * ** * * *
38751971 TGCCAAAGCCATGTTCCAGACATGGTCTTACATGGGATGTTTCCTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCTCATAT-CGG
* * * ** *
38752020 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCACATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCTCATATCGG
* ** * *
38752070 TGCCCATGCCATG-CCCTAGACATGGTCTTACGGGGGACCTCTCATTTTGG
1 TGCCAATGCCATGTCCC-AGACATGGTCTTACACGGGACCTCTCATATCGG
* *
38752120 TGCCAACGCCATGTCCCAAACATGGTCTTACACGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCTCATA
38752166 ACCTTAATAA
Statistics
Matches: 116, Mismatches: 26, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 40 0.34
50 72 0.62
51 3 0.03
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCTCTCATATCGG
Found at i:38761877 original size:53 final size:54
Alignment explanation
Indices: 38761751--38761895 Score: 229
Period size: 53 Copynumber: 2.7 Consensus size: 54
38761741 CCCCAAAATA
*
38761751 GGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAATTACCCCCATAG
1 GGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAG
* * *
38761805 GATAGAATGACCAAAATACCCCTATAGGGTAAAATGATCGAAATA-CCCCATAG
1 GGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAG
**
38761858 GGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
1 GGTAAAATGACCAAAATACCCCTATAGGGTAAAATGAC
38761896 TGTTATACCC
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 41 0.50
54 41 0.50
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (54 bp):
GGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAG
Found at i:38761897 original size:27 final size:27
Alignment explanation
Indices: 38761751--38761895 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
38761741 CCCCAAAATA
*
38761751 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
38761778 GGTAAAATGACCGAATTACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
38761805 GATAGAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
38761832 GGTAAAATGATCGAAATACCCC-ATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
38761858 GGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
38761885 GGTAAAATGAC
1 GGTAAAATGAC
38761896 TGTTATACCC
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 24 0.23
27 79 0.77
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:38761919 original size:27 final size:27
Alignment explanation
Indices: 38761766--38761928 Score: 118
Period size: 27 Copynumber: 6.1 Consensus size: 27
38761756 AATGACCAAA
* * *
38761766 ATACCCCTATAGGGTAAAATGACCG-A
1 ATACCCCTATAGGATAAAATGACTGTT
* * ****
38761792 ATTACCCCCATAGGATAGAATGACCAAA
1 A-TACCCCTATAGGATAAAATGACTGTT
* **
38761820 ATACCCCTATAGGGTAAAATGA-TCGAA
1 ATACCCCTATAGGATAAAATGACT-GTT
* **
38761847 ATACCCC-ATAGGGTAAAATGACTGAA
1 ATACCCCTATAGGATAAAATGACTGTT
*
38761873 ATACCCCTATAGGGTAAAATGACTGTT
1 ATACCCCTATAGGATAAAATGACTGTT
*
38761900 ATACCCCTA-AGAGATGAAATGACTGTT
1 ATACCCCTATAG-GATAAAATGACTGTT
38761927 AT
1 AT
38761929 GGCCTTATGT
Statistics
Matches: 118, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
26 27 0.23
27 89 0.75
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
ATACCCCTATAGGATAAAATGACTGTT
Found at i:38764853 original size:40 final size:39
Alignment explanation
Indices: 38764741--38764857 Score: 113
Period size: 40 Copynumber: 3.1 Consensus size: 39
38764731 ATAAATGGAC
*
38764741 GAGTATAATGGTGTGCCCAGCACTAGTCAGATAAACTGAT
1 GAGTATAATGGTGTGCCCCG-ACTAGTCAGATAAACTGAT
*
38764781 --G-A-AA--GT-TGCGCCCGACGCTAGTCGGATAAACTGAT
1 GAGTATAATGGTGTGC-CCCGA--CTAGTCAGATAAACTGAT
*
38764816 GAGTATAATGGTGTGCCCCGTACTAGTCAGATTAACTGAT
1 GAGTATAATGGTGTGCCCCG-ACTAGTCAGATAAACTGAT
38764856 GA
1 GA
38764858 AAGTATTTGC
Statistics
Matches: 62, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
33 4 0.06
34 5 0.08
35 17 0.27
36 2 0.03
37 2 0.03
38 2 0.03
39 2 0.03
40 18 0.29
41 6 0.10
42 4 0.06
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
GAGTATAATGGTGTGCCCCGACTAGTCAGATAAACTGAT
Found at i:38764853 original size:75 final size:75
Alignment explanation
Indices: 38764594--38764861 Score: 274
Period size: 75 Copynumber: 3.6 Consensus size: 75
38764584 AACCGACAAA
* * * ** * * * * * *
38764594 TATAATGATGTTCCCAGCACTAGCCAGATAAACAAACGAAAGTTGTGCCCAGTGCTAATTGGATA
1 TATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGTTGCGCCCAGCGCTAGTCGAATA
* *
38764659 AATCGACAAG
66 AATGGACGAG
* * * *
38764669 TATAATGGTATGCCTAGCACTAGT-ATTG-TAAACTGACGAAAGTTGCGCCCAGTGCTAGTCGAA
1 TATAATGGTGTGCCCAGCACTAGTCA--GATAAACTGATGAAAGTTGCGCCCAGCGCTAGTCGAA
38764732 TAAATGGACGAG
64 TAAATGGACGAG
*
38764744 TATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGTTGCGCCC-GACGCTAGTCGGAT
1 TATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGTTGCGCCCAG-CGCTAGTCGAAT
*
38764808 AAACT-GATGAG
65 AAA-TGGACGAG
* * *
38764819 TATAATGGTGTGCCCCGTACTAGTCAGATTAACTGATGAAAGT
1 TATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGT
38764862 ATTTGCCTGC
Statistics
Matches: 165, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
74 3 0.02
75 159 0.96
76 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (75 bp):
TATAATGGTGTGCCCAGCACTAGTCAGATAAACTGATGAAAGTTGCGCCCAGCGCTAGTCGAATA
AATGGACGAG
Found at i:38766846 original size:15 final size:15
Alignment explanation
Indices: 38766826--38766855 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38766816 GGATTGTTGG
38766826 TGCCAATCCTACACC
1 TGCCAATCCTACACC
*
38766841 TGCCAATCCTGCACC
1 TGCCAATCCTACACC
38766856 AATTGGTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.10, T:0.20
Consensus pattern (15 bp):
TGCCAATCCTACACC
Found at i:38776821 original size:26 final size:25
Alignment explanation
Indices: 38776747--38776830 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 25
38776737 CAACTGGACA
*
38776747 CAATTAATTTG-TCTAAACAATAGAC
1 CAATTAATTTGTTCTAAACTA-AGAC
* *
38776772 ACAATTAATGTGTAT-GAAA-TAAGAC
1 -CAATTAATTTGT-TCTAAACTAAGAC
38776797 CAATTTAATTTGTTCTAAACTAAGAGC
1 CAA-TTAATTTGTTCTAAACTAAGA-C
*
38776824 AAATTAA
1 CAATTAA
38776831 ATCACATATT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
24 4 0.09
25 15 0.33
26 20 0.43
27 6 0.13
28 1 0.02
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (25 bp):
CAATTAATTTGTTCTAAACTAAGAC
Found at i:38782338 original size:17 final size:17
Alignment explanation
Indices: 38782312--38782356 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
38782302 TGAAAGATCT
38782312 CCGA-CGAGCTTCCAAA
1 CCGATCGAGCTTCCAAA
38782328 CCGATCGAGCTTCCAAA
1 CCGATCGAGCTTCCAAA
* *
38782345 TCGATCAAGCTT
1 CCGATCGAGCTT
38782357 TCAATAATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (17 bp):
CCGATCGAGCTTCCAAA
Found at i:38784934 original size:24 final size:24
Alignment explanation
Indices: 38784900--38784945 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
38784890 AGATGAAGTG
38784900 ATTTTGCTTTATTTAATTTAACCT
1 ATTTTGCTTTATTTAATTTAACCT
*
38784924 ATTTTGTTTTATTTAATTTAAC
1 ATTTTGCTTTATTTAATTTAAC
38784946 ATTAATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (24 bp):
ATTTTGCTTTATTTAATTTAACCT
Found at i:38785757 original size:15 final size:15
Alignment explanation
Indices: 38785737--38785769 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
38785727 TATTAATTTC
38785737 ATGTTAATTTTTAAT
1 ATGTTAATTTTTAAT
*
38785752 ATGTTAATTTTTATT
1 ATGTTAATTTTTAAT
38785767 ATG
1 ATG
38785770 CAGTGGGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (15 bp):
ATGTTAATTTTTAAT
Found at i:38794338 original size:43 final size:42
Alignment explanation
Indices: 38794247--38794622 Score: 414
Period size: 43 Copynumber: 8.7 Consensus size: 42
38794237 GCGTCGCTAA
* * * *
38794247 CTTTAGCGGCGTTTTCTCCCACAAACGCCACTAAAGA-CAACAAC
1 CTTTAGCGGCGCTTT-T-CCACAAACGCCGCTATAGATCAA-GAC
* *
38794291 CTTTAGCGGCGCTTTTTCCACAAATGCCGCTATAGATCAAGAT
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGATCAAGAC
* * *
38794334 CTTTAGCGGCACTTTTTACACAAACGCCGCTATAGCTCAAGAC
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGATCAAGAC
* * * *
38794377 CTTTAGCGGCGGTTTTTACACAAATGCCGCT-TAGATTAAGAC
1 CTTTAGCGGC-GCTTTTCCACAAACGCCGCTATAGATCAAGAC
*
38794419 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAAATCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTATAGATCAAGAC
* * *
38794462 CTTTAGCGGCGCTTTTCCAACAAACACCACTATAGCTCAAGAC
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAAGAC
* * * *
38794505 CTTTAACGTCGCTTTTCCAACAAACGACGCTATAGCTCAAGAC
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAAGAC
* * * *
38794548 CTTTATCGACACTTTTCTCACAAACGCCGCTATAAATCAAGAC
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTATAGATCAAGAC
38794591 CTTTAGCGGCGCTTTTCACACAAACGCCGCTA
1 CTTTAGCGGCGCTTTTC-CACAAACGCCGCTA
38794623 GTAACATATC
Statistics
Matches: 285, Mismatches: 40, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
41 5 0.02
42 32 0.11
43 229 0.80
44 16 0.06
45 3 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCACAAACGCCGCTATAGATCAAGAC
Found at i:38794434 original size:128 final size:129
Alignment explanation
Indices: 38794289--38794622 Score: 442
Period size: 128 Copynumber: 2.6 Consensus size: 129
38794279 AAAGACAACA
* * * *
38794289 ACCTTTAGCGGCGCTTTT-TCCACAAATGCCGCTATAGATCAAGATCTTTAGCGGCACTTTTTAC
1 ACCTTTAGCGGCGCTTTTCT-CACAAACGCCGCTATAAATCAAGACCTTTAGCGGCGCTTTTTAC
* * * * *
38794353 ACAAACGCCGCTATAGCTCAAGACCTTTAGCGGCGGTTTTTAC-ACAAATGCCGCT-TAGATTAA
65 ACAAACGCCGCTATAGCTCAAGACCTTTAACGGC-GCTTTTACAACAAACGACGCTATAGATCAA
38794416 G
129 G
*
38794417 ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAAATCAAGACCTTTAGCGGCGC-TTTTCCA
1 ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAAATCAAGACCTTTAGCGGCGCTTTTTAC-
* * * * *
38794481 ACAAACACCACTATAGCTCAAGACCTTTAACGTCGCTTTTCCAACAAACGACGCTATAGCTCAAG
65 ACAAACGCCGCTATAGCTCAAGACCTTTAACGGCGCTTTTACAACAAACGACGCTATAGATCAAG
* * * *
38794546 ACCTTTATCGACACTTTTCTCACAAACGCCGCTATAAATCAAGACCTTTAGCGGCGCTTTTCACA
1 ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAAATCAAGACCTTTAGCGGCGCTTTTTACA
38794611 CAAACGCCGCTA
66 CAAACGCCGCTA
38794623 GTAACATATC
Statistics
Matches: 179, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
127 11 0.06
128 91 0.51
129 73 0.41
130 4 0.02
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (129 bp):
ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTATAAATCAAGACCTTTAGCGGCGCTTTTTACA
CAAACGCCGCTATAGCTCAAGACCTTTAACGGCGCTTTTACAACAAACGACGCTATAGATCAAG
Found at i:38794695 original size:30 final size:32
Alignment explanation
Indices: 38794661--38794722 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 32
38794651 ATAATATTTA
38794661 TTTCTATGATAAATATT-A-TTT-AAATTAAAT
1 TTTCTATGA-AAATATTAACTTTAAAATTAAAT
*
38794691 TTTCTATGAAAATTTTAACTTTAAAATTAAAT
1 TTTCTATGAAAATATTAACTTTAAAATTAAAT
38794723 ATAAAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 10 0.36
31 3 0.11
32 9 0.32
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (32 bp):
TTTCTATGAAAATATTAACTTTAAAATTAAAT
Found at i:38794756 original size:35 final size:34
Alignment explanation
Indices: 38794704--38794769 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
38794694 CTATGAAAAT
*
38794704 TTTAACTTTAAAATTAAATATAA-AAATTAATGAA
1 TTTAAATTTAAAATTAAA-ATAATAAATTAATGAA
*
38794738 TTTAAATTTAGAATTTAAAATAATAAATTAAT
1 TTTAAATTTA-AAATTAAAATAATAAATTAAT
38794770 AACACAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.41
Consensus pattern (34 bp):
TTTAAATTTAAAATTAAAATAATAAATTAATGAA
Found at i:38794922 original size:43 final size:43
Alignment explanation
Indices: 38794856--38794939 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
38794846 ACATATGCAA
* * *
38794856 GGTAATAAAACATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
* *
38794899 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATC
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATC
38794940 AAAGATATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:38800600 original size:15 final size:15
Alignment explanation
Indices: 38800580--38800608 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38800570 TAAATCTAAC
38800580 CCCTAAATCCATAAA
1 CCCTAAATCCATAAA
38800595 CCCTAAATCCATAA
1 CCCTAAATCCATAA
38800609 CTGATCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCCATAAA
Found at i:38800890 original size:13 final size:13
Alignment explanation
Indices: 38800865--38800902 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
38800855 TATCTTATCT
*
38800865 TTTACAATT-ATA
1 TTTAAAATTAATA
*
38800877 TTTGAAATTAATA
1 TTTAAAATTAATA
38800890 TTTAAAATTAATA
1 TTTAAAATTAATA
38800903 CTCTAATTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (13 bp):
TTTAAAATTAATA
Found at i:38801513 original size:40 final size:41
Alignment explanation
Indices: 38801401--38801557 Score: 230
Period size: 41 Copynumber: 3.9 Consensus size: 41
38801391 TTTTATTATT
**
38801401 ATTAGCGGCGCTT-TTTTAAAACGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCAGAGC
*
38801441 ATTAGCGGCGCTTCTTCAAAAACGCAGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCAGAGC
* * *
38801482 ATTGGCGGCGCCTT-TT-AAAAATGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCG-CTTCTTCAAAAACGCCGCTAAAGGCCAGAGC
38801522 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCC
38801558 CCAAAAACTC
Statistics
Matches: 104, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
39 3 0.03
40 45 0.43
41 53 0.51
42 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCAGAGC
Found at i:38801540 original size:81 final size:81
Alignment explanation
Indices: 38801405--38801557 Score: 261
Period size: 81 Copynumber: 1.9 Consensus size: 81
38801395 ATTATTATTA
* *
38801405 GCGGCGCTTTTTTAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAAAAACGCAGCT
1 GCGGCGCCTTTTAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAAAAACGCAGCT
38801470 AAAGGCCAGAGCATTG
66 AAAGGCCAGAGCATTG
* * *
38801486 GCGGCGCCTTTTAAAAATGCCGCTAAAGGCCCGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCT
1 GCGGCGCCTTTTAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAAAAACGCAGCT
38801551 AAAGGCC
66 AAAGGCC
38801558 CCAAAAACTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.19
Consensus pattern (81 bp):
GCGGCGCCTTTTAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCTTCAAAAACGCAGCT
AAAGGCCAGAGCATTG
Found at i:38801686 original size:40 final size:40
Alignment explanation
Indices: 38801594--38801744 Score: 150
Period size: 40 Copynumber: 3.8 Consensus size: 40
38801584 GGGCTTAGGC
* *
38801594 TTTTT-GCGGCGCTTTTTAGAAAA-CGCCGCTAATGCT-TA
1 TTTTTAGCGGCG-TTTTCATAAAAGCGCCGCTAATGCTCTA
38801632 TTTTTAGCGGCGTTTTCCA-AAAAGCGCCGCTAATGCTCTA
1 TTTTTAGCGGCGTTTT-CATAAAAGCGCCGCTAATGCTCTA
** * * *
38801672 CCTTTAGCGGCGTTTTTATAAGAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTCATAAAAGCGCCGCTAATGCTCTA
* * *
38801712 TTTTTAGTGGCGTTTTTATCCAAA-CGCCGCTAA
1 TTTTTAGCGGCGTTTTCAT-AAAAGCGCCGCTAA
38801745 AAACGCCGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
38 13 0.14
39 21 0.22
40 60 0.62
41 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCATAAAAGCGCCGCTAATGCTCTA
Found at i:38801748 original size:12 final size:12
Alignment explanation
Indices: 38801733--38801758 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38801723 GTTTTTATCC
38801733 AAACGCCGCTAA
1 AAACGCCGCTAA
38801745 AAACGCCGCTAA
1 AAACGCCGCTAA
38801757 AA
1 AA
38801759 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:38804230 original size:27 final size:27
Alignment explanation
Indices: 38804149--38804238 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
38804139 TTTGACATAT
* *
38804149 ACTGGTGAACCCTAGCTCACCAAACCA
1 ACTGGCGAACCCCAGCTCACCAAACCA
* * *
38804176 ACAGGTGAACCCCCAGCTCACCAGACCA
1 ACTGGCGAA-CCCCAGCTCACCAAACCA
*
38804204 ACTGGCGAACCCCAGCTCGCCAAACCA
1 ACTGGCGAACCCCAGCTCACCAAACCA
38804231 ACTGGCGA
1 ACTGGCGA
38804239 GCACCAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 32 0.58
28 23 0.42
ACGTcount: A:0.31, C:0.40, G:0.19, T:0.10
Consensus pattern (27 bp):
ACTGGCGAACCCCAGCTCACCAAACCA
Found at i:38809239 original size:750 final size:744
Alignment explanation
Indices: 38807089--38809691 Score: 2637
Period size: 750 Copynumber: 3.5 Consensus size: 744
38807079 GAAGTCTGTA
* * * ** * *
38807089 AATGGAAACTCCCTCAAGTTCGCCTAGAAAACTTGCCCTTGGAAGACTAACGAACACCTGTGGTA
1 AATGAAAACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAACGAA-ACCTATGCTA
* ** * * ** *
38807154 CACTTTATTGACCAATATACTGTCTCCAAATGAACTAGT-TTCAATCATGCTCTTATCTAT-GTT
65 CACTTTATTGACCAATATACTGTCCCCAAACAAACTAGTGAT-AGTCACACCCTTATCTATGGTT
* * * * * *
38807217 TCTATTGGAA-TCCTCCACTCACAAGCTAGTTCACTCAAAATATACTAGTGCGTGGAACTAGATT
129 TCTACTAGAATTCC-CAACTCACTAGCTAGTTCGCTCAAAACATACTAGTGCGTGGAACTAGATT
* * ** * *
38807281 CAATAAAGGAAAATAATGGAATAGTTTGTAGAGTGAAGGTAGTTGTGATCACATCGATTAAGCCC
193 CAATGAAGGAAAACAATGGAATAGTTCATAGAGTGAAGGTAGTTGTGATAACATCG-TCAAGCCC
* * * * **
38807346 TAATCTTGTGGTTCCCTTACAATATAGACTCGTGCGAGGCCTCCTAACTCATCTTTCCTAGCAAC
257 TGATCTTGTGGTTCCCTTACAACATAGACTAGTGCAAGGCCTCCTAACTCATCTTGGCTAGCAAC
* * ** ** ** *
38807411 TG-TTTGAGATAAAATTTGTTGTGCAACTTGCCTTGTATCACAGCCTT-TTCCTTTACCTTGTGC
322 -GATGTGAGATAAAGTTTGTTGCCCAACTTGCCTTGTATCATTGCCTTCTT-CTCGACCTTGTCC
* * ** * * *
38807474 ACGAGAACCAGCTTGCAC-TTAGAGGGGGTCACATTTTGCACATGTGATTTCTCTTGTCTATTTG
385 ATGAGCACCAGC-T-CACATCGGAGGGGGTCACATTTTGCACATATGATTTCTCTTATCTATCTG
* * * *
38807538 GGCAATCTTTCCTCGTCTAGAAACACATCAGGAAAGTCCCTCGCAATACATATCTTGCGAACCCT
448 GGCAATCTTTTCTCGTCTAGAAACACATCAGGAAAGT-CCTCACAATACATATCTCGCGAACCCC
* *
38807603 TACAGCCTTGTCCTCCGAACCCATCAGAAATACGAGATAGGCTTCTTAGCCCTTACCCAACATC-
512 TATAGCCTTGTCCT-CGAACCCATCAGAAATACGAGATAGGCTTCATAGCCCTTACCCAACATCT
* *
38807667 -TT-TA-TTGCTT-TCAATATTGAGACCACAATAGACATAAATTGAGCTCACTCACCTACCACTA
576 TTTCTACTTTCTTGTCAATA-TG-G----CATTAGACATAAATTGAGCTCACTCACCTACCACTA
* * * *
38807728 CAATTTCCTTACCTTCACTGTTTCGTAAAATGACTCTTTTTTAGTTCCAAGTCAATATTGGCTTT
635 CAATTTCCTTGCCTTCACTATTTCGTAAAGTGACTC-TTTTTAGTTCGAAGTCAATATTGGCTTT
* *
38807793 ATGCTCAGCCAACTAATCCCATTCCC-AAGCTTACATCGAACACATAG
699 ATGCTCAGCCAACCAAT-CCA-TCCCAAAGATTACATCGAACACATAG
* * * *
38807840 AACGAAAACT-GATCATGTTCGAGTCA-AAAACTTGCCCTTGGATCACTAAC-AAA-C-A--CTT
1 AATGAAAACTCCATCAAGTTCGCGT-AGAAAACTTGCCCTTGGATCACTAACGAAACCTATGC-T
* * * * *
38807898 ACGCTTTATTGACCAATATAATGTCCCTAAACGAACTAGTGATAGTCACGCCCTTATCTATGGTT
64 ACACTTTATTGACCAATATACTGTCCCCAAACAAACTAGTGATAGTCACACCCTTATCTATGGTT
** * * * *
38807963 TCTACTAGAATTCCCAACTCACGCGCTAGTTCGCTGAAAACATACGAGTGTGTGGAAAC-ATATT
129 TCTACTAGAATTCCCAACTCACTAGCTAGTTCGCTCAAAACATACTAGTGCGTGG-AACTAGATT
* * * * * * *
38808027 AAATCAAGGAAAAAGAAT-GAATAGTTCACAAAGAT-AAGGTACTTGTGATAACATCAGTCAAAC
193 CAATGAAGG-AAAACAATGGAATAGTTCATAGAG-TGAAGGTAGTTGTGATAACATC-GTCAAGC
* * * * * *
38808090 CTTGATATTGTGGTTCCC-TACAACATAGACTCA-TGCGAGGCCTTCTGA-TACATCTTGGGTAG
255 CCTGATCTTGTGGTTCCCTTACAACATAGACT-AGTGCAAGGCCTCCTAACT-CATCTTGGCTAG
* * * ** * * * *
38808152 CAAC-AGTGTAAAATATAGTACGCTGCCCAACTTGCCTTGTATTATTG-CGTCTTCATCGACCTC
318 CAACGA-TGTGAGATAAAGTTTGTTGCCCAACTTGCCTTGTATCATTGCCTTCTTC-TCGACCTT
* * * *
38808215 GTCCATGAGCACCAGCTCACACTTGGGTGGGGGTCACATTCTGCACTTGA-GATTTTTCTTGTCT
381 GTCCATGAGCACCAGCTCACA--TCGGAGGGGGTCACATTTTGCACAT-ATGA------TT-TCT
* *
38808279 CTCTAGGCAATCTTTTATCATATGGGAAATCTTTTCTCGTCTAGAAGCACATCAGGAAAGTCCTT
436 CT-T-----ATC---TATC---TGGGCAATCTTTTCTCGTCTAGAAACACATCAGGAAAGTCC-T
* * ** * * * * *
38808344 CAAAAAATGTATCTCGTGAACCCCTATAGCTTTGTCCTACGAACCCATAAAAAATGCGAGATAGG
488 CACAATACATATCTCGCGAACCCCTATAGCCTTGTCCT-CGAACCCATCAGAAATACGAGATAGG
** * * * *
38808409 CTTTGTAGCCCTTACCCAACATCTTTTCTGCTATCATTGTCAAAATGGCATTAGACATAAATTAA
552 CTTCATAGCCCTTACCCAACATCTTTTCTACTTTC-TTGTCAATATGGCATTAGACATAAATTGA
* * ** * * *
38808474 GGTCACTCACCTACCACTATAATTTCCCGGCCTTCACTATTTCGTAAAGTGACTCTTTTCAATTT
616 GCTCACTCACCTACCACTACAATTTCCTTGCCTTCACTATTTCGTAAAGTGACTCTTTTTAGTTC
* * * * *
38808539 GAAATCAATCTTGGCTATATGCTTAGCCAACCAATCCATCCCAAAGATTATATCGAACACATAG
681 GAAGTCAATATTGGCTTTATGCTCAGCCAACCAATCCATCCCAAAGATTACATCGAACACATAG
** *
38808603 AATGGCAACTCCATCAAGTTCGCGTAGATAACTTGCCCTTGGATCACTAACAGAAACCTATGCTA
1 AATGAAAACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAAC-GAAACCTATGCTA
* *
38808668 TACTTTATTGACCAATATACTATCCCCAAACAAACTAGTGACT-GTCACACCCTTATCTATGGTT
65 CACTTTATTGACCAATATACTGTCCCCAAACAAACTAGTGA-TAGTCACACCCTTATCTATGGTT
* * *
38808732 TCTACTAGAATTCCAAACTGACTAGCTAGTTCGCTCAAAACATACTACTGCGTGGAACTAGATTC
129 TCTACTAGAATTCCCAACTCACTAGCTAGTTCGCTCAAAACATACTAGTGCGTGGAACTAGATTC
* * * *
38808797 AATGTAGGAAAACAATAGAATAGTTCGTAGAGTGAAGGTAGTTGTGATCACATCTGTCAAGCCCT
194 AATGAAGGAAAACAATGGAATAGTTCATAGAGTGAAGGTAGTTGTGATAACATC-GTCAAGCCCT
* * * * *
38808862 GATCTTATGGTTCCCTTACAACACAGACTAGTTCAAGGTCTCCTGACTCATCTTGGCTAGCAACG
258 GATCTTGTGGTTCCCTTACAACATAGACTAGTGCAAGGCCTCCTAACTCATCTTGGCTAGCAACG
* *
38808927 ATTTGAGATAAAGTTTGTTGCCCAACTTGCATTGTATCATTGCCTTCTTCTCGACCTTGTCCATG
323 ATGTGAGATAAAGTTTGTTGCCCAACTTGCCTTGTATCATTGCCTTCTTCTCGACCTTGTCCATG
* * *
38808992 AGCACCAGGTCACATCCGGAGGGGGTTACATTTTGCACATATGATTTCTCTTATCTAGCTGGGCA
388 AGCACCAGCTCACAT-CGGAGGGGGTCACATTTTGCACATATGATTTCTCTTATCTATCTGGGCA
* *
38809057 ATCTTTTCTCGTCTCA-AAACACATCAGGAATGTCACTCACAGTACATATCTCGCGAACCCCTAT
452 ATCTTTTCTCGTCT-AGAAACACATCAGGAAAGTC-CTCACAATACATATCTCGCGAACCCCTAT
* * * * **
38809121 AGCCTTATCCTCTGAACCCATCAGAAATATGAGGTAGGCTTCACAATCCTTACCCAACATCTTTT
515 AGCCTTGTCCTC-GAACCCATCAGAAATACGAGATAGGCTTCATAGCCCTTACCCAACATCTTTT
* *
38809186 CTACTTTCGTTGTCAATATGGCATTAGACATAAATTGAGCTCGCTCACCTACCACTACAATATCC
579 CTACTTTC-TTGTCAATATGGCATTAGACATAAATTGAGCTCACTCACCTACCACTACAATTTCC
* *
38809251 TTGCGTTCACTATTTCGCAAAGTGACTCTTTTTAGTTCGAAGTCAATATTGGCTTTATGCTCAGC
643 TTGCCTTCACTATTTCGTAAAGTGACTCTTTTTAGTTCGAAGTCAATATTGGCTTTATGCTCAGC
*
38809316 CAACCAATCCATCCCAAAGATTACATCAAACACATAG
708 CAACCAATCCATCCCAAAGATTACATCGAACACATAG
* * * * * *
38809353 AATGACAACTCCGTCAAGTTCGCATAGAAAACTTGCCCTTGGATCACTAATGGACACCGATGCTA
1 AATGAAAACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAA-CGAAACCTATGCTA
* * * *
38809418 CACTTTATTGA-CAATTATATTGTCCACAAATGAAA-TAGTGATAGTCACACCTTTATCTATGGT
65 CACTTTATTGACCAA-TATACTGTCCCCAAA-CAAACTAGTGATAGTCACACCCTTATCTATGGT
* * * *
38809481 TTCTACTAGAATTCCCAACTGACTGGCTAGTTCGCTGAAAACATACTAGTGCGTCGAACTAGATT
128 TTCTACTAGAATTCCCAACTCACTAGCTAGTTCGCTCAAAACATACTAGTGCGTGGAACTAGATT
* * * * *
38809546 CAATGAAGGAAAACAATGGAATAGTTCAAAGAGTGAAGTTATTTGTGATAACATCGGCCAAGCCT
193 CAATGAAGGAAAACAATGGAATAGTTCATAGAGTGAAGGTAGTTGTGATAACATC-GTCAAGCCC
** *
38809611 TGATCTTGTGGTTCCCTTACAACATAGACTCTTGCGAA-GCCTCCTAACTCATCCTCGG-TAGCA
257 TGATCTTGTGGTTCCCTTACAACATAGACTAGTGC-AAGGCCTCCTAACTCAT-CTTGGCTAGCA
*
38809674 ACAATGTGAGATAAAGTT
320 ACGATGTGAGATAAAGTT
38809692 CACTGACTAA
Statistics
Matches: 1513, Mismatches: 265, Indels: 149
0.79 0.14 0.08
Matches are distributed among these distances:
743 3 0.00
744 5 0.00
745 137 0.09
746 126 0.08
747 16 0.01
748 1 0.00
749 7 0.00
750 566 0.37
751 20 0.01
752 2 0.00
753 8 0.01
754 1 0.00
756 3 0.00
759 2 0.00
761 1 0.00
762 12 0.01
763 32 0.02
764 72 0.05
765 172 0.11
766 3 0.00
767 3 0.00
768 15 0.01
769 190 0.13
770 103 0.07
771 13 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (744 bp):
AATGAAAACTCCATCAAGTTCGCGTAGAAAACTTGCCCTTGGATCACTAACGAAACCTATGCTAC
ACTTTATTGACCAATATACTGTCCCCAAACAAACTAGTGATAGTCACACCCTTATCTATGGTTTC
TACTAGAATTCCCAACTCACTAGCTAGTTCGCTCAAAACATACTAGTGCGTGGAACTAGATTCAA
TGAAGGAAAACAATGGAATAGTTCATAGAGTGAAGGTAGTTGTGATAACATCGTCAAGCCCTGAT
CTTGTGGTTCCCTTACAACATAGACTAGTGCAAGGCCTCCTAACTCATCTTGGCTAGCAACGATG
TGAGATAAAGTTTGTTGCCCAACTTGCCTTGTATCATTGCCTTCTTCTCGACCTTGTCCATGAGC
ACCAGCTCACATCGGAGGGGGTCACATTTTGCACATATGATTTCTCTTATCTATCTGGGCAATCT
TTTCTCGTCTAGAAACACATCAGGAAAGTCCTCACAATACATATCTCGCGAACCCCTATAGCCTT
GTCCTCGAACCCATCAGAAATACGAGATAGGCTTCATAGCCCTTACCCAACATCTTTTCTACTTT
CTTGTCAATATGGCATTAGACATAAATTGAGCTCACTCACCTACCACTACAATTTCCTTGCCTTC
ACTATTTCGTAAAGTGACTCTTTTTAGTTCGAAGTCAATATTGGCTTTATGCTCAGCCAACCAAT
CCATCCCAAAGATTACATCGAACACATAG
Found at i:38814748 original size:15 final size:15
Alignment explanation
Indices: 38814730--38814763 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
38814720 AATAAGTTAA
*
38814730 CATATATAAATATAT
1 CATATATAAACATAT
*
38814745 CATATATATACATAT
1 CATATATAAACATAT
38814760 CATA
1 CATA
38814764 AATGTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (15 bp):
CATATATAAACATAT
Found at i:38818022 original size:28 final size:28
Alignment explanation
Indices: 38817959--38818136 Score: 234
Period size: 28 Copynumber: 6.4 Consensus size: 28
38817949 ATAATAAGTC
* *
38817959 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
38817986 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
38818014 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
38818042 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
38818070 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
38818097 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
38818126 CGCACACTTAG
1 CGCACACTTAG
38818137 CGCCAATCTC
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 43 0.32
28 80 0.59
29 13 0.10
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:38836077 original size:19 final size:19
Alignment explanation
Indices: 38836039--38836078 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
38836029 TTTATTATTA
**
38836039 ATATATTTATAATTGTAAT
1 ATATATTTATAATTAAAAT
*
38836058 ATATATTTGTAATTAAAAT
1 ATATATTTATAATTAAAAT
38836077 AT
1 AT
38836079 TAATATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
ATATATTTATAATTAAAAT
Found at i:38840930 original size:40 final size:40
Alignment explanation
Indices: 38840886--38841109 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
38840876 AAGTGAATAT
* * * * *
38840886 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA
38840926 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
38840966 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
38841006 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
38841046 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
38841085 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
38841110 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:38841061 original size:120 final size:119
Alignment explanation
Indices: 38840848--38841109 Score: 321
Period size: 120 Copynumber: 2.2 Consensus size: 119
38840838 TGAATGCTGT
* * * * * * * *
38840848 CCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGATTAAGATCCGAAGGCATTC
* *
38840912 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAA
* *
38840968 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGAT-CCGAAGGCATTC
* ** * *
38841032 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
*
38841087 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
38841110 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 80 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
Found at i:38841129 original size:79 final size:80
Alignment explanation
Indices: 38840886--38841144 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
38840876 AAGTGAATAT
* * * * * *
38840886 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
38840950 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
38840966 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
38841031 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
38841046 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
38841110 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
38841125 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
38841145 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:38842833 original size:27 final size:26
Alignment explanation
Indices: 38842802--38842979 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 26
38842792 TAAATTGTAC
38842802 AGCACTAAGTGTGCGATTCGATTATGT
1 AGCACTAAGTGTGCGATT-GATTATGT
* * * *
38842829 TGCACTAATTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGATTATGT
** *
38842855 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGATTATGT
* *
38842883 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGATTATGT
*
38842911 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGATTATGT
* *
38842938 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGATTATGT
*
38842965 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
38842980 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGATTATGT
Found at i:38842924 original size:82 final size:81
Alignment explanation
Indices: 38842803--38842958 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
38842793 AAATTGTACA
* * * * *
38842803 GCACTAAGTGTGCGATTCGATTATGTTGCACTAATTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
38842867 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
38842884 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
38842949 TGCGAGTTGA
65 TGCGAATTGA
38842959 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:38842925 original size:55 final size:54
Alignment explanation
Indices: 38842830--38842979 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
38842820 CGATTATGTT
* ** * *
38842830 GCACTAATTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * ** *
38842884 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGT-TGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
38842939 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTGTGCG
38842980 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 36 0.44
55 45 0.56
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:38842970 original size:82 final size:81
Alignment explanation
Indices: 38842799--38842979 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
38842789 GATTAAATTG
* * * * *
38842799 TACAGCACTAAGTGTGCGATTCGATTATGTTGCACTAATTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
38842864 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
38842880 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
38842944 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
38842962 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
38842980 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 20 0.25
82 61 0.75
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:38844986 original size:28 final size:28
Alignment explanation
Indices: 38844954--38845110 Score: 127
Period size: 28 Copynumber: 5.6 Consensus size: 28
38844944 GATAGTCCCC
* *
38844954 ACGGACATCCACATTTAAGATTGTCTTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
* ** * *
38844982 GCGGACTTCTGCGTTTTAGATCGTCTTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
* *
38845010 ACAGACTTCCACATTTAAGATCGTCCTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
** * * *
38845038 ACAAATTTCTACATTTAAGATCATCTTG
1 ACGGACTTCCACATTTAAGATCGTCTTG
* * * *
38845066 GCGGGCTTCCACATTTTAGATCGT-TCTA
1 ACGGACTTCCACATTTAAGATCGTCT-TG
*
38845094 ACGGGCTTCCACATTTA
1 ACGGACTTCCACATTTA
38845111 CAATAATGCC
Statistics
Matches: 98, Mismatches: 30, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
27 1 0.01
28 97 0.99
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (28 bp):
ACGGACTTCCACATTTAAGATCGTCTTG
Found at i:38847988 original size:25 final size:25
Alignment explanation
Indices: 38847960--38848017 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
38847950 ACCTTAGCAC
38847960 GCTCTCTGATTATTAACACATCAGT
1 GCTCTCTGATTATTAACACATCAGT
* *
38847985 GCTCTCTGATTATTAGCACATCTGT
1 GCTCTCTGATTATTAACACATCAGT
*
38848010 TCTCTCTG
1 GCTCTCTG
38848018 TATAGTACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (25 bp):
GCTCTCTGATTATTAACACATCAGT
Found at i:38850760 original size:41 final size:41
Alignment explanation
Indices: 38850706--38850819 Score: 156
Period size: 41 Copynumber: 2.8 Consensus size: 41
38850696 TTAATTAAAA
* *
38850706 CAGATTCAACGGCACATAGCCTGCTAGACTTATAGCCTGATT
1 CAGA-TCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
** *
38850748 CAGATCACCGGCACATAGCCTGCTAGGTTTATAACTTGATT
1 CAGATCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
* *
38850789 CAGACCACCGGCACGTAGCCTGCTAGACTTA
1 CAGATCACCGGCACATAGCCTGCTAGACTTA
38850820 AAGTCTGAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
41 59 0.94
42 4 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (41 bp):
CAGATCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
Found at i:38853131 original size:39 final size:40
Alignment explanation
Indices: 38852927--38853149 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
38852917 TTGAATGCTG
* * * * * *
38852927 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
38852967 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
38853007 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
38853047 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
38853087 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
38853126 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
38853150 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:38853169 original size:79 final size:80
Alignment explanation
Indices: 38853002--38853184 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
38852992 GTGCGAGATA
* * *
38853002 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
38853067 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
38853082 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
38853146 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
38853161 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
38853185 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:38854571 original size:2 final size:2
Alignment explanation
Indices: 38854564--38854614 Score: 52
Period size: 2 Copynumber: 26.0 Consensus size: 2
38854554 CAATAACTTT
* * *
38854564 TA TA TA TA TA TG TA TA TA TA T- TA TA GCA T- TA TA TA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
38854605 TA TA TA TA TA
1 TA TA TA TA TA
38854615 CATGCTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:38854614 original size:12 final size:12
Alignment explanation
Indices: 38854565--38854617 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
38854555 AATAACTTTT
**
38854565 ATATATATATGT
1 ATATATATATAC
38854577 ATATATATTATAGC
1 ATATATA-TATA-C
38854591 ATTATATATATAC
1 A-TATATATATAC
38854604 ATATATATATAC
1 ATATATATATAC
38854616 AT
1 AT
38854618 GCTTATTCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
12 20 0.56
13 5 0.14
14 5 0.14
15 6 0.17
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (12 bp):
ATATATATATAC
Found at i:38862763 original size:44 final size:44
Alignment explanation
Indices: 38862631--38863116 Score: 431
Period size: 44 Copynumber: 11.0 Consensus size: 44
38862621 TTTTCAATCC
* * * *
38862631 ACTTCCTACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * * **
38862675 ACTTCGCCACCAGTATGGGAAGACAAGATCTACTGTCTTTGATCT
1 ACTTC-CCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
*** * * *
38862720 ACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* *
38862764 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATC-GTCGATCC
1 ACTTC-CCACCAATATAGGAAGACAAGATCTGCTATCTG-CGATCT
* * * * **
38862808 ACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTTGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * * *
38862852 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * *
38862896 ACTTCGCCACCAATATGGGAAGACAGGATCTGC-ATCTTCGATCC
1 ACTTC-CCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * * *
38862940 ACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * * *
38862984 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * *
38863028 ACTTTGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCC
1 AC-TTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
* * * * *
38863072 ACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
38863116 A
1 A
38863117 TAAAATCAAT
Statistics
Matches: 347, Mismatches: 86, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
43 73 0.21
44 172 0.50
45 102 0.29
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (44 bp):
ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTGCGATCT
Found at i:38862847 original size:132 final size:132
Alignment explanation
Indices: 38862638--38863116 Score: 778
Period size: 132 Copynumber: 3.6 Consensus size: 132
38862628 TCCACTTCCT
* * * * * * * * *
38862638 ACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGA
1 ACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGA
* ** * *
38862703 TCTACTGTCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
64 TCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
38862768 CGCC
129 CGCC
*
38862772 ACCAATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
*
38862837 TGCTACCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
66 TGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
38862902 CC
131 CC
*
38862904 ACCAATATGGGAAGACAGGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
*
38862969 TGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTTG
66 TGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
38863034 CC
131 CC
38863036 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
1 ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
38863101 TGCTACCTTCGATCTA
66 TGCTACCTTCGATCTA
38863117 TAAAATCAAT
Statistics
Matches: 326, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
132 290 0.89
133 14 0.04
134 22 0.07
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (132 bp):
ACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATC
TGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCG
CC
Found at i:38880768 original size:41 final size:41
Alignment explanation
Indices: 38880714--38880827 Score: 156
Period size: 41 Copynumber: 2.8 Consensus size: 41
38880704 TTAATTAAAA
* *
38880714 CAGATTCAACGGCACATAGCCTGCTAGACTTATAGCCTGATT
1 CAGA-TCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
* ** *
38880756 CAGATCACCGGCACATAGCTTGCTAGGTTTATAACTTGATT
1 CAGATCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
*
38880797 CAGATCACCGGCACGTAGCCTGCTAGACTTA
1 CAGATCACCGGCACATAGCCTGCTAGACTTA
38880828 AAGTATGAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 58 0.94
42 4 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (41 bp):
CAGATCACCGGCACATAGCCTGCTAGACTTATAACCTGATT
Found at i:38881496 original size:2 final size:2
Alignment explanation
Indices: 38881489--38881539 Score: 52
Period size: 2 Copynumber: 26.0 Consensus size: 2
38881479 CAATAACTTT
* * *
38881489 TA TA TA TA TA TG TA TA TA TA T- TA TA GCA T- TA TA TA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
38881530 TA TA TA TA TA
1 TA TA TA TA TA
38881540 CATGCTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:38881539 original size:12 final size:12
Alignment explanation
Indices: 38881490--38881542 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
38881480 AATAACTTTT
**
38881490 ATATATATATGT
1 ATATATATATAC
38881502 ATATATATTATAGC
1 ATATATA-TATA-C
38881516 ATTATATATATAC
1 A-TATATATATAC
38881529 ATATATATATAC
1 ATATATATATAC
38881541 AT
1 AT
38881543 GCTTATTCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
12 20 0.56
13 5 0.14
14 5 0.14
15 6 0.17
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (12 bp):
ATATATATATAC
Found at i:38886215 original size:22 final size:22
Alignment explanation
Indices: 38886173--38886215 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
38886163 AACTTAGTCC
* *
38886173 TTTTTCAATTCTAAGCTTAAAG
1 TTTTTCAATTCTAAACCTAAAG
38886195 TTTTTCAATT-TAACACCTAAA
1 TTTTTCAATTCTAA-ACCTAAA
38886216 ACTTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.44
Consensus pattern (22 bp):
TTTTTCAATTCTAAACCTAAAG
Found at i:38900498 original size:16 final size:16
Alignment explanation
Indices: 38900479--38900515 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
38900469 ACACACATGG
*
38900479 CAAAGTACACAAAACA
1 CAAAATACACAAAACA
*
38900495 CAAAATACACAAAATA
1 CAAAATACACAAAACA
38900511 CAAAA
1 CAAAA
38900516 CACAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.68, C:0.22, G:0.03, T:0.08
Consensus pattern (16 bp):
CAAAATACACAAAACA
Found at i:38903543 original size:14 final size:14
Alignment explanation
Indices: 38903524--38903554 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
38903514 GATGTGGATG
38903524 AAATAAGGTGTCTC
1 AAATAAGGTGTCTC
38903538 AAATAAGGTGTCTC
1 AAATAAGGTGTCTC
38903552 AAA
1 AAA
38903555 GAGAATCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (14 bp):
AAATAAGGTGTCTC
Found at i:38907747 original size:26 final size:26
Alignment explanation
Indices: 38907717--38907769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
38907707 CACCACTGAA
*
38907717 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
38907743 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
38907769 T
1 T
38907770 TTTTCATTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.34, G:0.23, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:38907917 original size:103 final size:102
Alignment explanation
Indices: 38907685--38907948 Score: 388
Period size: 102 Copynumber: 2.6 Consensus size: 102
38907675 TAACCGTTAT
* *
38907685 CGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 CGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
**
38907750 ATCAGCACATAGCAACCCCTTTTTCATTTCAAAGATA
66 ATCAGCACATAGCAACCCCTTTCACATTTCAAAGATA
*
38907787 CGGTGGAT-ATCGCACTTAGCATCACCAATG-ATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGG
*
38907850 GAATCAGCACTTAGCAACCCCCTTTCACATTTCAAAGATA
64 GAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATA
* * * **
38907890 TGGTGGATCACGCCCATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
38907949 TTTATATACA
Statistics
Matches: 145, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
101 29 0.20
102 45 0.31
103 44 0.30
104 27 0.19
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (102 bp):
CGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCTTTCACATTTCAAAGATA
Found at i:38908311 original size:30 final size:30
Alignment explanation
Indices: 38908284--38908341 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
38908274 CCACCCAACT
38908284 TTTTGAAAAATTACAATTTTGCCCCCAAAG
1 TTTTGAAAAATTACAATTTTGCCCCCAAAG
* * * *
38908314 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
38908342 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAG
Found at i:38911021 original size:3 final size:3
Alignment explanation
Indices: 38911013--38911041 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
38911003 GATCACCATT
38911013 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
38911042 TTTCTAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:38911432 original size:43 final size:43
Alignment explanation
Indices: 38911333--38911460 Score: 131
Period size: 43 Copynumber: 3.0 Consensus size: 43
38911323 AACTTGTACA
*
38911333 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
38911376 ATACC-ACTGTCCCAGACAG-GGTCTTACACT-TAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACA-TGTAAACACATA-TCG
* * *
38911419 ATGCCAACATCCCAGACGTTGTCTTACACG-ATAACACATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTA-AACACATATC
38911461 AGAAATCCTA
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
42 5 0.07
43 60 0.86
44 5 0.07
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:38940455 original size:15 final size:15
Alignment explanation
Indices: 38940435--38940465 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38940425 AAGCTTGGTA
38940435 CGAAATTAATTAATT
1 CGAAATTAATTAATT
*
38940450 CGAAATTAATTTATT
1 CGAAATTAATTAATT
38940465 C
1 C
38940466 CACTACATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (15 bp):
CGAAATTAATTAATT
Found at i:38943757 original size:17 final size:17
Alignment explanation
Indices: 38943735--38943767 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
38943725 GTTAGTGCAC
*
38943735 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
38943752 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
38943768 AATGTTACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:38950110 original size:50 final size:49
Alignment explanation
Indices: 38950044--38950243 Score: 213
Period size: 51 Copynumber: 4.0 Consensus size: 49
38950034 AAAGTGAAAG
*
38950044 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAA
* * * *
38950093 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
* * * * *
38950142 TAGTTTGGATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAA
1 T-GATAGG-TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
* * * * *
38950193 TGGTAATTGTCACATGTGCAGTACTATGTGCAGGCTACTATGTGAACCGAA
1 TGAT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
38950244 CATCATTGAT
Statistics
Matches: 123, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
49 7 0.06
50 43 0.35
51 72 0.59
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
Found at i:38950132 original size:101 final size:100
Alignment explanation
Indices: 38950016--38950235 Score: 257
Period size: 101 Copynumber: 2.2 Consensus size: 100
38950006 TCATGGATTG
* *
38950016 TGTGTAGGCCACTATGTAAAAGTGAAAGTGATGG-TCACGTGTGTAGTACTATGTGCAGGCTACT
1 TGTGCAGGCTACTATGT-AAAG-GAAAGT-ATGGATCACGTGTGTAGTACTATGTGCAGGCTACT
* *
38950080 ACGTGTACCAGAATGAT-A-GGTCGCATGTGTAGTACTA
63 ACGTGTACC-GAATGATAATGGTCACATGTGCAGTACTA
** * * *
38950117 TGTGCAGGCTACTATGCGTACCGGATAGTTTGGATCACGTGTGTAGTACTATGTGTAGGCTACTA
1 TGTGCAGGCTACTAT--GTAAAGGAAAGTATGGATCACGTGTGTAGTACTATGTGCAGGCTACTA
* * *
38950182 CGTGTATCGAATGGTAATTGTCACATGTGCAGTACTA
64 CGTGTACCGAATGATAATGGTCACATGTGCAGTACTA
38950219 TGTGCAGGCTACTATGT
1 TGTGCAGGCTACTATGT
38950236 GAACCGAACA
Statistics
Matches: 102, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
100 11 0.11
101 56 0.55
102 33 0.32
103 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (100 bp):
TGTGCAGGCTACTATGTAAAGGAAAGTATGGATCACGTGTGTAGTACTATGTGCAGGCTACTACG
TGTACCGAATGATAATGGTCACATGTGCAGTACTA
Found at i:38958021 original size:64 final size:64
Alignment explanation
Indices: 38957894--38958022 Score: 152
Period size: 64 Copynumber: 2.0 Consensus size: 64
38957884 ACAGCATTCT
* * * * * * *
38957894 GATCAGTATTGATCCTGCATGTGTTGCGGATATACTGTAGCTCTTTGTGAGCATCTTGTTATAG
1 GATCAGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCATCCTGATATAG
* * *
38957958 GATCGGTATTGATCCTGCATAG-ATTGTGGACATACCGCAGCTCTTTATGAGCGTCCTGATATAG
1 GATCAGTATTGATCCTGCAT-GTATTGCGGACATACCGCAGCTCTTTATGAGCATCCTGATATAG
38958022 G
1 G
38958023 CTCTTTGAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
64 53 0.98
65 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.35
Consensus pattern (64 bp):
GATCAGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCATCCTGATATAG
Found at i:38958034 original size:25 final size:25
Alignment explanation
Indices: 38957997--38958044 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
38957987 ACATACCGCA
38957997 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTGATATAG
*
38958022 GCTCTTTGA-GAGCTTCCTGATAT
1 GCTCTTT-ATGAGCGTCCTGATAT
38958045 GACTCGCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.38
Consensus pattern (25 bp):
GCTCTTTATGAGCGTCCTGATATAG
Found at i:38959991 original size:27 final size:27
Alignment explanation
Indices: 38959959--38960021 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
38959949 TGTGCTTACT
38959959 CGAGCTGTGAAAATGGGCCTACTCACA
1 CGAGCTGTGAAAATGGGCCTACTCACA
* *
38959986 CGAGCTATGAAAATGGGCCTGCTCACA
1 CGAGCTGTGAAAATGGGCCTACTCACA
*
38960013 TGAGCTGTG
1 CGAGCTGTG
38960022 GGTCAAAACC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (27 bp):
CGAGCTGTGAAAATGGGCCTACTCACA
Found at i:38962896 original size:27 final size:27
Alignment explanation
Indices: 38962866--38962923 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
38962856 TCTCCTAAGA
* *
38962866 GTATAACAATCATTTTACCCTGTGGGG
1 GTATAACAATCATTTTACCCTATGAGG
** **
38962893 GTATTTCGGTCATTTTACCCTATGAGG
1 GTATAACAATCATTTTACCCTATGAGG
38962920 GTAT
1 GTAT
38962924 TTTAGAGCAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (27 bp):
GTATAACAATCATTTTACCCTATGAGG
Found at i:38967642 original size:47 final size:47
Alignment explanation
Indices: 38967579--38967958 Score: 616
Period size: 47 Copynumber: 8.1 Consensus size: 47
38967569 GAAATGATAG
*
38967579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
38967626 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38967673 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38967720 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38967767 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38967814 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38967861 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
38967908 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38967955 TAAG
1 TAAG
38967959 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 315 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:38970016 original size:43 final size:43
Alignment explanation
Indices: 38969968--38970070 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
38969958 TTGGTTTTCA
38969968 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
38970011 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
38970054 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
38970071 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:38970532 original size:40 final size:39
Alignment explanation
Indices: 38970488--38970600 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 39
38970478 GAGTTACTAA
38970488 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* *
38970527 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTA--G-TG
1 -ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* * * *
38970564 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
38970601 CGTGTATTCG
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
36 27 0.44
37 2 0.03
38 2 0.03
40 31 0.50
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
Found at i:38970545 original size:80 final size:81
Alignment explanation
Indices: 38970409--38970558 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 81
38970399 TCGAATGATG
**
38970409 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATT
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCATT
*
38970473 GGTGCGAGTTACTAAA
66 CGTGCGAGTTACTAAA
** * *
38970489 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCA
38970552 TTCGTGC
64 TTCGTGC
38970559 TAGTGATCCG
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
80 38 0.63
81 16 0.27
82 6 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCATT
CGTGCGAGTTACTAAA
Found at i:38970792 original size:25 final size:25
Alignment explanation
Indices: 38970763--38970814 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
38970753 TGTGTATTAA
38970763 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* * *
38970788 TGAATAATTAGAGGCACTGTGTGTG
1 TGAATAATAAGAGGCACTATGTATG
38970813 TG
1 TG
38970815 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:38974061 original size:47 final size:47
Alignment explanation
Indices: 38973998--38974131 Score: 189
Period size: 47 Copynumber: 3.1 Consensus size: 47
38973988 GAAATGATAG
*
38973998 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
38974045 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA--TGTG-
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
38974089 T---G----ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
38974129 TAA
1 TAA
38974132 TGCCGATGTG
Statistics
Matches: 81, Mismatches: 1, Indels: 15
0.84 0.01 0.15
Matches are distributed among these distances:
37 31 0.38
39 4 0.05
40 1 0.01
41 1 0.01
44 1 0.01
45 4 0.05
47 39 0.48
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.31
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:38974096 original size:37 final size:38
Alignment explanation
Indices: 38974054--38974242 Score: 185
Period size: 37 Copynumber: 4.8 Consensus size: 38
38974044 ATAAGGCCTA
38974054 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTG-TG
1 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGCTG
38974091 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTG-TG
1 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGCTG
* *
38974128 ATAATGCCGA--TG-TGAATGTGATAA-TGTGATAAG-GCCTA
1 AT-A-GCCGATGTGATGAATGTGA-AAGTGT-ATATGTG-CTG
*
38974166 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTA
1 ATAGCCGATGTGATGAATGTGAAAGTGTATA--TG-T---G-CTG
*
38974211 ATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
38974243 ATGTAATAAG
Statistics
Matches: 131, Mismatches: 4, Indels: 28
0.80 0.02 0.17
Matches are distributed among these distances:
36 18 0.14
37 48 0.37
38 11 0.08
39 17 0.13
40 1 0.01
43 1 0.01
45 35 0.27
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (38 bp):
ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGCTG
Found at i:38974168 original size:112 final size:115
Alignment explanation
Indices: 38974040--38974251 Score: 331
Period size: 112 Copynumber: 1.8 Consensus size: 115
38974030 AGTGTATATG
38974040 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTG-T-G-ATAGCCGATGT
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAGCATAGCCGATGT
* *
38974102 GATGAATGTGAAAGTGTATATGTGTGATAATGCCGATGTGAATGTGATAA
66 GATGAATGTGAAAGTGTATATATGTAATAATGCCGATGTGAATGTGATAA
*
38974152 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCC
1 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGAT-A-G-C--ATAGCC
38974217 GATGTGATGAATGTGAAAGTGTATATATGTAATAA
61 GATGTGATGAATGTGAAAGTGTATATATGTAATAA
38974252 GGCCTAATGG
Statistics
Matches: 89, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
112 49 0.55
113 1 0.01
116 1 0.01
120 38 0.43
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (115 bp):
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAGCATAGCCGATGT
GATGAATGTGAAAGTGTATATATGTAATAATGCCGATGTGAATGTGATAA
Found at i:38974262 original size:47 final size:47
Alignment explanation
Indices: 38974137--38974393 Score: 369
Period size: 47 Copynumber: 5.6 Consensus size: 47
38974127 GATAATGCCG
* *
38974137 ATGTGAATGTG-ATA-ATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
38974182 ATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38974227 ATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
38974274 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*** * * * * *
38974321 ATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
38974368 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
38974394 TCCCGAATGG
Statistics
Matches: 192, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
44 2 0.01
45 51 0.27
47 139 0.72
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:38981105 original size:3 final size:3
Alignment explanation
Indices: 38981097--38981122 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
38981087 TATCCCTCAA
38981097 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
38981123 CCTTGAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:38988012 original size:29 final size:29
Alignment explanation
Indices: 38987892--38988012 Score: 161
Period size: 29 Copynumber: 4.2 Consensus size: 29
38987882 TATCTACAAT
*
38987892 CATCAAATATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* *
38987921 CATCAAAAATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
* ** *
38987950 CATAGAATATGAAAAGGGATGGTTTCAAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
**
38987979 CATCGAATATGAAAAGGGATGGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTGACGAC
38988008 CATCG
1 CATCG
38988013 TTTTGCACAC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTGACGAC
Found at i:38996741 original size:50 final size:50
Alignment explanation
Indices: 38996626--38996874 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
38996616 GATAATAACA
* * ** * *
38996626 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
38996677 TGCTC-ATGCCATGTCCCAGACATAGTCTTATAGGGGACCTCTCATCTCGG
1 TGC-CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
38996727 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
38996777 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* *
38996832 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
38996875 TTACCCAAAT
Statistics
Matches: 171, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 94 0.55
51 30 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 40 0.23
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:38996990 original size:13 final size:13
Alignment explanation
Indices: 38996969--38997000 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
38996959 GCTTGGATCA
*
38996969 TCATCAAATAAAT
1 TCATAAAATAAAT
38996982 TCATAAAATAAAT
1 TCATAAAATAAAT
38996995 TCATAA
1 TCATAA
38997001 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:39005524 original size:30 final size:30
Alignment explanation
Indices: 39005408--39005626 Score: 142
Period size: 30 Copynumber: 7.4 Consensus size: 30
39005398 TCATTGACAA
* * * *
39005408 ATGAAAAGGGATAGCTTCAGCTATCGAA-T
1 ATGAAAAGGGATGGCTTCGGCCATCAAACT
* * *
39005437 ACGAAAAGGGATAGCTTCGGCTA-C-AACT
1 ATGAAAAGGGATGGCTTCGGCCATCAAACT
* * * *
39005465 ATGGAAAGGGATAG-TGACGACCATCAAACT
1 ATGAAAAGGGATGGCT-TCGGCCATCAAACT
* * *
39005495 ACGAAAAGGGATGGCTTTGGCCATTAAACT
1 ATGAAAAGGGATGGCTTCGGCCATCAAACT
* * *
39005525 ATGAAAAGGGATGGCTTCGGCTATCAGATT
1 ATGAAAAGGGATGGCTTCGGCCATCAAACT
* * * *
39005555 ATGAAAAGGGATGG-TGACGACCATTAAATT
1 ATGAAAAGGGATGGCT-TCGGCCATCAAACT
** * ** *
39005585 ATGAAAAGGGATAACTTTGGCTGTCGAACT
1 ATGAAAAGGGATGGCTTCGGCCATCAAACT
39005615 ATGAAAAGGGAT
1 ATGAAAAGGGAT
39005627 AACTTCAGTT
Statistics
Matches: 148, Mismatches: 35, Indels: 13
0.76 0.18 0.07
Matches are distributed among these distances:
27 3 0.02
28 18 0.12
29 23 0.16
30 102 0.69
31 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.22
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGGCCATCAAACT
Found at i:39005640 original size:90 final size:89
Alignment explanation
Indices: 39005408--39005641 Score: 274
Period size: 90 Copynumber: 2.6 Consensus size: 89
39005398 TCATTGACAA
** * * *
39005408 ATGAAAAGGGATAGCTTCAGCTATCGAA-TACGAAAAGGGATAGCTTCGGCTA-CAACTATGGAA
1 ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAGCTTCGGCTATCAATTATGAAA
39005471 AGGGATAGTGACGACCATCAAACT
66 AGGGATAGTGACGACCATCAAACT
* * * ** *
39005495 ACGAAAAGGGATGGCTTTGGCCATTAAACTATGAAAAGGGATGGCTTCGGCTATCAGATTATGAA
1 ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAGCTTCGGCTATCA-ATTATGAA
* * *
39005560 AAGGGATGGTGACGACCATTAAATT
65 AAGGGATAGTGACGACCATCAAACT
* * * * *
39005585 ATGAAAAGGGATAACTTTGGCTGTCGAACTATGAAAAGGGATAACTTCAGTTATCAA
1 ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAGCTTCGGCTATCAA
39005642 ATTACAAAAA
Statistics
Matches: 119, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
87 21 0.18
88 22 0.18
89 3 0.03
90 73 0.61
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.23
Consensus pattern (89 bp):
ATGAAAAGGGATAGCTTTGGCTATCGAACTATGAAAAGGGATAGCTTCGGCTATCAATTATGAAA
AGGGATAGTGACGACCATCAAACT
Found at i:39008835 original size:36 final size:36
Alignment explanation
Indices: 39008794--39008869 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
39008784 TTAAATTATT
39008794 GTTAAATGTGCCATGATTTATTGTTAAATGTGCATG
1 GTTAAATGTGCCATGATTTATTGTTAAATGTGCATG
39008830 GTTAAATGTGCCATGATTTATTGTTAAATGTGCATG
1 GTTAAATGTGCCATGATTTATTGTTAAATGTGCATG
39008866 GTTA
1 GTTA
39008870 TTTGAATGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (36 bp):
GTTAAATGTGCCATGATTTATTGTTAAATGTGCATG
Found at i:39008965 original size:40 final size:39
Alignment explanation
Indices: 39008881--39009065 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
39008871 TTGAATGATG
* * * *
39008881 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
39008921 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
39008961 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
39009000 TCCGGGTTAAGTCCTGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
* *
39009041 -CCGGGCTATGTCCTAAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
39009066 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 37 0.30
40 76 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:39009019 original size:79 final size:80
Alignment explanation
Indices: 39008881--39009037 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
39008871 TTGAATGATG
* *
39008881 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
39008946 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
39008961 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCAA
*
39009023 TTGTGCGAGTTACTA
64 TTGTGCGAGATACTA
39009038 TAACCGGGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 46 0.69
80 18 0.27
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAAT
Found at i:39009087 original size:79 final size:78
Alignment explanation
Indices: 39008918--39009098 Score: 181
Period size: 79 Copynumber: 2.3 Consensus size: 78
39008908 CTAAGTGACC
* * * *
39008918 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCAT
**
39008983 TTGTGCGAGTTACT
65 TTGAACGAGTTACT
* * * *
39008997 AAATCCGGGTTAAG-TCCTGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCTAAAGG
1 ATATCC-GGTTAAGATCC-GAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGG
39009060 CATTTGAACGAG-TAGCT
62 CATTTGAACGAGTTA-CT
39009077 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
39009099 TACGTGATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
78 5 0.06
79 51 0.61
80 28 0.33
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATT
TGAACGAGTTACT
Found at i:39016944 original size:39 final size:40
Alignment explanation
Indices: 39016843--39017027 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
39016833 TTGAATGATG
* * *
39016843 TTCC-GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* * *
39016881 TATCCGGACTAAGAT-CCGAAGGCATTTGTCCGAGATACTAA
1 T-TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
39016922 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
39016961 ATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-A
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
39017000 TAACCGGGCTATGTCCCGAAGGCATTTG
1 T-TCCGGGCTAAGTCCCGAAGGCATTTG
39017028 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:39016979 original size:79 final size:80
Alignment explanation
Indices: 39016843--39017027 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
39016833 TTGAATGATG
* *
39016843 TTCC-GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAA
39016906 TTGTCCGAGATACTAA
66 TTGTCCGAGATACT-A
* * * **
39016922 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
39016984 ATTGTGCGAGTTACTA
65 ATTGTCCGAGATACTA
* *
39017000 TAACCGGGCTATGTCCCGAAGGCATTTG
1 T-TCCGGGCTAAGTCCCGAAGGCATTTG
39017028 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAA
TTGTCCGAGATACTA
Found at i:39017049 original size:79 final size:79
Alignment explanation
Indices: 39016896--39017060 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
39016886 GGACTAAGAT
* * **
39016896 CCGAAGGCATTTGTCCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
39016961 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
39016975 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTCCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
39017038 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
39017054 CCGAAGG
1 CCGAAGG
39017061 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTCCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:39020878 original size:24 final size:27
Alignment explanation
Indices: 39020820--39020878 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 27
39020810 ACAACTGAAT
39020820 TGGCGAACACTAGCTTGCAAAAAATAC
1 TGGCGAACACTAGCTTGCAAAAAATAC
* *
39020847 TGGCGAACAC-A-CTTGC-AATAATTC
1 TGGCGAACACTAGCTTGCAAAAAATAC
39020871 TGGCGAAC
1 TGGCGAAC
39020879 CCTTTACCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 14 0.47
25 5 0.17
26 1 0.03
27 10 0.33
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (27 bp):
TGGCGAACACTAGCTTGCAAAAAATAC
Found at i:39036516 original size:25 final size:25
Alignment explanation
Indices: 39036488--39036557 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
39036478 TTATCAATTC
39036488 TCAGCTCG-AGCGAGCTTACCAATAT
1 TCAGCTCGCA-CGAGCTTACCAATAT
* * *
39036513 TCAGCTTGCATGAGCTTACCGATAT
1 TCAGCTCGCACGAGCTTACCAATAT
* * *
39036538 TCAGCTTGTACAAGCTTACC
1 TCAGCTCGCACGAGCTTACC
39036558 CTTTACAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (25 bp):
TCAGCTCGCACGAGCTTACCAATAT
Found at i:39038347 original size:37 final size:37
Alignment explanation
Indices: 39038297--39038375 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
39038287 TTATTACGAA
* * *
39038297 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
39038334 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
39038371 GTCTT
1 GTCTT
39038376 TAAAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:39038581 original size:47 final size:47
Alignment explanation
Indices: 39038494--39038988 Score: 738
Period size: 47 Copynumber: 10.4 Consensus size: 47
39038484 CCTTTCGGGA
* * * * * * * *
39038494 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39038541 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39038588 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39038635 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39038682 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
39038729 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39038776 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39038823 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
39038874 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39038923 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39038970 CTTATCACACATATACACT
1 CTTATCACATATATACACT
39038989 CTCTTGGCTG
Statistics
Matches: 416, Mismatches: 28, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 317 0.76
48 1 0.00
49 59 0.14
50 1 0.00
51 38 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:39042507 original size:53 final size:53
Alignment explanation
Indices: 39042449--39042558 Score: 175
Period size: 53 Copynumber: 2.1 Consensus size: 53
39042439 GACTTGGCTA
* *
39042449 TGTGACCAAGTTAGAGAGTTACACGAGCATGGACACAGACTGGGACACGACCG
1 TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGACTAGGACACGACCG
* * *
39042502 TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGGCTAGGACATGACTG
1 TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGACTAGGACACGACCG
39042555 TGTG
1 TGTG
39042559 TCTCTATTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.17
Consensus pattern (53 bp):
TGTGACCAAGTTAGAGAGCTACACGAGCATGGACACAGACTAGGACACGACCG
Found at i:39045206 original size:50 final size:50
Alignment explanation
Indices: 39045039--39045280 Score: 179
Period size: 50 Copynumber: 4.7 Consensus size: 50
39045029 AGGGATGAGA
** * **
39045039 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA---TATGAGAAC
* * * *
39045095 TCCCACGTAAGACCATGTCTGGGACATGGCTTTGGCACCAAGATTTGAG--G
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC--GATATGAGAAC
** *
39045145 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * * * *
39045195 TCCCATATAAGACCATATCTGGGATATGTCATTGG--CGGTACATGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ATATGAGAAC
* *
39045243 ATGCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
39045281 TGTTATTATC
Statistics
Matches: 152, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
48 12 0.08
49 34 0.22
50 65 0.43
52 4 0.03
53 1 0.01
55 2 0.01
56 34 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:39052131 original size:39 final size:40
Alignment explanation
Indices: 39051927--39052149 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
39051917 TTGAATGTTG
* * * * * *
39051927 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
39051967 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
39052007 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
39052047 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
39052087 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
39052126 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
39052150 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:39052169 original size:79 final size:80
Alignment explanation
Indices: 39052002--39052184 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
39051992 GTGCGAGATA
* * *
39052002 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
39052067 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
39052082 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
39052146 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
39052161 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
39052185 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:39059882 original size:40 final size:40
Alignment explanation
Indices: 39059830--39059999 Score: 177
Period size: 40 Copynumber: 4.3 Consensus size: 40
39059820 AGACTAAGAT
39059830 CCGAAGG-ATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGCC
* *
39059869 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
* * * * *
39059909 CCGAAGGCATTCGTGCGAGTTATTAAATCC-GGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
* * * * * * *
39059948 CCGAAGGCA-TTGTGTGAGTTACTAAAACCAGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
39059987 CCGAAGGCATTTG
1 CCGAAGGCATTTG
39060000 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 16 0.14
39 41 0.36
40 55 0.48
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGCC
Found at i:39059954 original size:39 final size:39
Alignment explanation
Indices: 39059830--39059997 Score: 171
Period size: 39 Copynumber: 4.3 Consensus size: 39
39059820 AGACTAAGAT
* * * *
39059830 CCGAAGG-ATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCAGGTTATGTC
* * * *
39059869 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCAGGTTATGTC
*
39059909 CCGAAGGCATTCGTGCGAGTTATTAAATCC-GGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCAGGTTATGTC
* * *
39059948 CCGAAGGCATTGTGTGAGTTACTAAAACCAGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCAGGTTATGTC
39059987 CCGAAGGCATT
1 CCGAAGGCATT
39059998 TGAACGAGGA
Statistics
Matches: 114, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
38 15 0.13
39 48 0.42
40 48 0.42
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCAGGTTATGTC
Found at i:39064815 original size:513 final size:514
Alignment explanation
Indices: 39061375--39071488 Score: 18756
Period size: 513 Copynumber: 19.8 Consensus size: 514
39061365 GGGTGTTACA
* *
39061375 AAAATGCAGAAACTT-CATATGAACTTACCAAGAAAATGGCAATTAGAAAG-TTCA-GGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39061437 CATCA-AGATTGCTATATTATGAT-CGATACTGCTCACTCGAGCTGT-GAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
*
39061499 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATT-CCATTTCTACTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
* *
39061563 TCACTTTCCATTC-TATCTAAACCATTT-TT-AATTCGTACAGGTTC-TTTACCGATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39061624 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
* *
39061689 ATTTGCAACAGCATCGTATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
*
39061754 GAATCTCTTCAAATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39061819 TTAAATCTACAATTATATATATTTAATAAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAAT-AATATACAAAAACACAATTAAAATATAATACG
39061879 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGG-CTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39061943 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
*
39062008 GTTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
* * * * *
39062073 TCACTTTCCATTATTATCTAAA-CATTTGTTAAATTCAGACGGGTTCTTTTATCAATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
* *
39062137 ATTTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATCACAATTCTCTATACAGTTTA
261 ATTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
* * * * * *
39062202 AATCTGCAATATCATCATAAACATGCTATCCAACAACATACCACTCCCACATCAATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
* * * *
39062267 TGAATCGCTTCATATTTATCAAGTATTTCATATTTTACGATTTGATCCATTTTATATAGAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
* * *
39062332 ATTAAATCTACAATTATATATATTTAATATATATACAAAAACGCAATTACAATATAACACG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
* * * *
39062393 AAAATGCAGTAACTTCCATATGAACTTACCTAGAAATTGGCAACTAGAAAATTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
* * * * *
39062458 CATCACAGATTTCTATATAATGATCCGATACTGCTCACCCGAGCTATCGAGAATCCACAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
* * *
39062523 GCTGGAACTCAACCATCGAATAAATCTCTAATCACGAATCCTATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
* * *
39062588 TCACTTTCCATTATTATCTAAACCATTTCTTAAATTCATACAGGTTCTTTTACCAATTT-GTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
* *
39062652 A-TTCAAACTCATTAATTCTATAGACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39062716 AATTTGCAACATCATCATATACATGCTATCC-ACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
*
39062780 TGAATCTCTTCATATTTATCAAATATTTCTTATCTTACGATTTGATCCA-TTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
*
39062844 ATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATATG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39062905 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
*
39062970 CATCACTGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGT-GAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
*
39063034 GCTGGATCTCAACCATCGAATAAAT-TCTAATCACGATTCCCATTTCTACTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
* *
39063098 TCACTTTCCATTCTTATCTAAACCATTT-TTAAATTCGTACAGGTTCTTTTACCGATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39063162 A-TTCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
* * *
39063226 AATTTGCAACAGCATCGTATACATGCTATCCAAGAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39063291 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
*
39063356 ATTAAATCTACAATTATATATATTTAATACAT-TACAAAAACACAATTAAAATAGAATAC-
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39063415 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGG-CTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
*
39063479 CATCACAGATTGCTATATTATGATCCG-TACTGCTCACTCGAGCTATCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
* *
39063543 GCTGGATCTC-ACCATCGAAT-AATCTCTAATCGCGATTCCCATTTCTCATTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39063606 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTC-TTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
* *
39063670 ATATCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTAT-TATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39063734 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39063799 GAATCTCTTCATATTTATCAAATATTTCTT-TTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
*
39063863 TTAAATCTACAATTATATATATTTAATACATATACAAAAGCACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
*
39063923 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGAAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
*
39063988 CATCACTGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
*
39064053 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTACTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
*
39064118 TCACTTTCCATTCTTATCTAAACCATTT-TT-AATTC-TACAGGTTCTTTTACCGATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39064180 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
*
39064245 ATTTGCAACATCATCGTATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39064310 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39064375 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39064434 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGG-CTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39064498 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39064563 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39064627 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
*
39064692 ATATCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39064757 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39064822 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39064887 ATTAAATCTACAATTATATATATTTAATACATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39064948 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAAC-AGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39065012 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39065077 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
*
39065141 TCACTTTCCATTCTTATCTAAACCATTT-TTAAATTCGTACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39065205 ATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39065270 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39065335 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39065400 ATTAAATCTACAATTATATATATTTAATACATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39065461 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39065526 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39065591 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
* *
39065656 TCACTTTCCATTCTTATCTAAACCATTT-TTAAATTCGTACAGGTTCTTTTACCGATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39065720 ATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
* *
39065785 AATTTGCAACAGCATCGTATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39065850 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39065915 ATTAAATCTACAATTATATATATTTAATACATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39065976 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGG-CTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39066040 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39066105 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39066169 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
*
39066234 ATATCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTAT--ATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39066297 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39066362 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39066427 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39066486 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39066551 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39066616 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TT-TCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39066678 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39066742 A-TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39066806 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39066871 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39066936 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39066995 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39067060 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39067125 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39067189 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39067254 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39067319 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39067384 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39067449 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39067508 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39067573 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39067638 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39067703 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
*
39067768 ATATCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39067833 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39067898 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39067963 ATTAAATCTACAATTATATATATTTAATACATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39068024 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39068089 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39068154 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
*
39068219 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTC-TACAGGTTCTTTTACCGATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39068283 ATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39068348 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39068413 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39068478 ATTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39068538 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39068603 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39068668 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39068733 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
*
39068798 ATATCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39068863 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39068928 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39068993 ATTAAATCTACAATTATATATATTTAATACATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATA-ATATACAAAAACACAATTAAAATATAATACG
39069054 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39069119 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39069184 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39069248 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTC-TACAGGTTCTTTTA-CCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39069311 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39069376 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39069441 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39069506 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39069565 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39069630 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39069695 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39069759 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39069824 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39069889 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39069954 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39070019 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39070078 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39070143 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39070208 G-TGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39070272 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
*
39070337 ATATCAAACTCTTTAATTTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
261 ATTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTA
39070402 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
325 AATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCA
39070467 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
390 TGAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCC
39070532 ATTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
455 ATTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39070592 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAG-AAGTTTCAGGGACTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39070656 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
*
39070721 GTTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39070786 TCACTTTCCATTCTTATCTAAACCATTT-TTAAATTCATACAGGTTCTTTTA-CCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39070849 A-TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39070913 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39070978 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATAT-AAAAGCCA
391 GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
39071042 TTAAATCTACAATTATATATATTTAATAATATAC-AAAACACAA-TAAAATATAATACG
456 TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
39071099 AAAATGCAGAAACTTCCATATGAACTTACCGAG-AAATGGCAACTAGAAAGTTTCAGGG-CTAAT
1 AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
39071162 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
66 CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
39071227 G-TGGATCTCAACCATCGAAT-AATCTCTAATCACGATT-CCATTTCTCCTTTTTATAACCATAA
131 GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
39071289 TCACTTTCCATTCTTATCTAAACCATTT-TT-AATTC-TACAGGTTCTTTTACCCATTTCGTATC
196 TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
39071351 A-TTCAAACTCTTTAATTTATACA-ACATTAGTTATTTTGAAT-ACAATTCT-TAT--ATTTTAA
261 ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
39071410 ATTTGC-A-A-CATCATATACATGCTATCC-A-AACATACCATT-TCACAT-CATTCAATGTCAT
326 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
39071468 GAATCTCTTCATATTTATCAA
391 GAATCTCTTCATATTTATCAA
39071489 TTTCTATTTA
Statistics
Matches: 9407, Mismatches: 140, Indels: 140
0.97 0.01 0.01
Matches are distributed among these distances:
490 34 0.00
491 6 0.00
492 11 0.00
493 1 0.00
494 19 0.00
495 1 0.00
496 1 0.00
497 13 0.00
499 3 0.00
500 8 0.00
501 32 0.00
502 40 0.00
503 55 0.01
504 32 0.00
505 52 0.01
506 163 0.02
507 258 0.03
508 251 0.03
509 781 0.08
510 714 0.08
511 983 0.10
512 652 0.07
513 1845 0.20
514 1601 0.17
515 1392 0.15
516 459 0.05
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (514 bp):
AAAATGCAGAAACTTCCATATGAACTTACCGAGAAAATGGCAACTAGAAAGTTTCAGGGACTAAT
CATCACAGATTGCTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGT
GCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTCTCCTTTTTATAACCATAA
TCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATC
ATTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
GAATCTCTTCATATTTATCAAATATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
TTAAATCTACAATTATATATATTTAATAATATACAAAAACACAATTAAAATATAATACG
Found at i:39071518 original size:1 final size:1
Alignment explanation
Indices: 39071512--39071539 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
39071502 TTGATCTTAT
39071512 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
39071540 TATATACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:39081950 original size:39 final size:40
Alignment explanation
Indices: 39081799--39081968 Score: 227
Period size: 40 Copynumber: 4.3 Consensus size: 40
39081789 NNNCTAAGAT
* * *
39081799 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
*
39081839 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
39081879 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
39081919 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATA-TC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTA-AGTC
39081958 CCGAAGGCATT
1 CCGAAGGCATT
39081969 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 32 0.27
40 85 0.73
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:39081988 original size:79 final size:80
Alignment explanation
Indices: 39081821--39082003 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
39081811 GTGCGAGATA
* * *
39081821 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
39081886 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
39081901 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATA-TCCCGAAG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTA-AGTCCCGAAG
*
39081964 GCATTTGAACGAGGAG
65 GCATTCGAACGAGGAG
* *
39081980 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
39082004 TACGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 28 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:39086649 original size:46 final size:46
Alignment explanation
Indices: 39086597--39086690 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
39086587 ATAGTGTGGC
*
39086597 GTTCATCATATACCAAGGTTCTTATCA-TCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTC-TTGATAGTGGGTCGAG
39086643 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
39086689 GT
1 GT
39086691 CTTTTCTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 44 0.96
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:39091311 original size:21 final size:21
Alignment explanation
Indices: 39091285--39091377 Score: 104
Period size: 21 Copynumber: 4.5 Consensus size: 21
39091275 CTTGTACAGG
*
39091285 ATTGCACTTTGGTGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
*
39091306 ATTGCAC-TCTGGTGCCTCTAT
1 ATTGCACTTC-GGTGCCTCTGT
* *
39091327 ATTGCTCTTCGATGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
39091348 -TTGCACTTCGGTGCCTC--T
1 ATTGCACTTCGGTGCCTCTGT
39091366 ATCTGCACTTCG
1 AT-TGCACTTCG
39091378 ATGCTTTTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 25 0.41
21 32 0.52
22 2 0.03
ACGTcount: A:0.11, C:0.29, G:0.20, T:0.40
Consensus pattern (21 bp):
ATTGCACTTCGGTGCCTCTGT
Found at i:39091363 original size:41 final size:41
Alignment explanation
Indices: 39091287--39091381 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
39091277 TGTACAGGAT
* * *
39091287 TGCACTTTGGTGCCTCTGTATTGCACTCTGGTGCCTCTATAT
1 TGCACTTCGATGCCTCTGTATTGCACTCTGGTGCCTCTAT-C
*
39091329 TGCTCTTCGATGCCTCTGT-TTGCACT-TCGGTGCCTCTATC
1 TGCACTTCGATGCCTCTGTATTGCACTCT-GGTGCCTCTATC
39091369 TGCACTTCGATGC
1 TGCACTTCGATGC
39091382 TTTTGTTACG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 13 0.28
41 18 0.38
42 16 0.34
ACGTcount: A:0.11, C:0.29, G:0.21, T:0.39
Consensus pattern (41 bp):
TGCACTTCGATGCCTCTGTATTGCACTCTGGTGCCTCTATC
Found at i:39100007 original size:371 final size:371
Alignment explanation
Indices: 39099324--39100069 Score: 1357
Period size: 371 Copynumber: 2.0 Consensus size: 371
39099314 ATAATATGCT
39099324 CAAATTAATATAAAATAAGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTT
1 CAAATTAATATAAAATAAGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTT
*
39099389 TAATAATTTTTATGTCCTAATTTCATATTTTCGCATATTTCATTAAATTATTAAACAATTACTTG
66 TAATAATTTCTATGTCCTAATTTCATATTTTCGCATATTTCATTAAATTATTAAACAATTACTTG
*
39099454 GTTTTAACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAACCCTATATATTTTTCA
131 ATTTTAACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAACCCTATATATTTTTCA
* *
39099519 GTTTACACACCCCCAAACTTAAATCATTGCTCGTCCTGAGTAATGTTCATGCATAGCACAAGGTC
196 GTTTACACACCCCAAAACTTAAATCAGTGCTCGTCCTGAGTAATGTTCATGCATAGCACAAGGTC
* * * *
39099584 TTGCTAAGGCAAATTTTGCTAAGAGTATAAGTAGAATCAATCTTTGTCTCATAATCATGCGTCAA
261 TTGCAAAGGCAAATTATGCTAAGAGTATAAGTAGAATCAATATTTGTCTCATAATCATGCATCAA
39099649 TAAATTCATACTCATAGACCTTCTTTATTAACAAGTAACTCATATA
326 TAAATTCATACTCATAGACCTTCTTTATTAACAAGTAACTCATATA
*
39099695 CAAATTAATATAAAATAAGTCATTTTATGCATGAAAACTATATAATAAAGTTTAAAATCACATTT
1 CAAATTAATATAAAATAAGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTT
*
39099760 TAATAATTTCTATGTCCTAATTTCATATTTTCGCATATTTCATTAATTTATTAAACAATTACTTG
66 TAATAATTTCTATGTCCTAATTTCATATTTTCGCATATTTCATTAAATTATTAAACAATTACTTG
* * *
39099825 ATTTTAACAACAAATTTAAGTAAAAAGGTGATGAATTATGTAGGAAAAATCTTATATATTTTTCA
131 ATTTTAACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAACCCTATATATTTTTCA
*
39099890 GTTTAGACACCCCAAAACTTAAATCAGTGCTCGTCCTGAGTAATGTTCATGCATAGCACAAGGTC
196 GTTTACACACCCCAAAACTTAAATCAGTGCTCGTCCTGAGTAATGTTCATGCATAGCACAAGGTC
39099955 TTGCAAAGGCAAATTATGCTAAGAGTATAAGTAGAATCAATATTTGTCTCATAATCATGCATCAA
261 TTGCAAAGGCAAATTATGCTAAGAGTATAAGTAGAATCAATATTTGTCTCATAATCATGCATCAA
*
39100020 TAAATTCATGCTCATAGACCTTCTTTATTAACAAGTAACTCATATA
326 TAAATTCATACTCATAGACCTTCTTTATTAACAAGTAACTCATATA
39100066 CAAA
1 CAAA
39100070 CATTTTGAAA
Statistics
Matches: 360, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
371 360 1.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (371 bp):
CAAATTAATATAAAATAAGTCATTTTATGCATGAAAACTATATAATAAAGTATAAAATCACATTT
TAATAATTTCTATGTCCTAATTTCATATTTTCGCATATTTCATTAAATTATTAAACAATTACTTG
ATTTTAACAACAAATTTAAGTAAAAAGGTGATGAATTATATAGGAAAAACCCTATATATTTTTCA
GTTTACACACCCCAAAACTTAAATCAGTGCTCGTCCTGAGTAATGTTCATGCATAGCACAAGGTC
TTGCAAAGGCAAATTATGCTAAGAGTATAAGTAGAATCAATATTTGTCTCATAATCATGCATCAA
TAAATTCATACTCATAGACCTTCTTTATTAACAAGTAACTCATATA
Found at i:39128514 original size:27 final size:27
Alignment explanation
Indices: 39128483--39128848 Score: 416
Period size: 27 Copynumber: 13.6 Consensus size: 27
39128473 ATTCATGGGC
* *
39128483 AAATGACTAAAATACCCTCGATGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* **
39128510 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
39128537 AAATTA-TCAAAATACCCTCAAAGAGTA
1 AAATTACT-AAAATACCCTCGAAGGGTA
* *
39128564 AAATTACCAAAATACCCTCGAAGGGTT
1 AAATTACTAAAATACCCTCGAAGGGTA
*
39128591 AAATTA-TCAAAATACCCTCAAAGGGTA
1 AAATTACT-AAAATACCCTCGAAGGGTA
39128618 AAATTACTAAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
39128645 AAATTACCAAAATACCCTCGAAGGGTT
1 AAATTACTAAAATACCCTCGAAGGGTA
* * * *
39128672 AAATCA-TCGAAATACCCTCGAAAGGAA
1 AAATTACT-AAAATACCCTCGAAGGGTA
**
39128699 AAATTACCGAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
** * *
39128726 AAATTACCGAAACA-CCTTGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
39128752 AAATTACTACAATACCCTCAAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
39128779 AAATTACTGAAATACCCTCGAAGGATA
1 AAATTACTAAAATACCCTCGAAGGGTA
*
39128806 AAATTACCAAAATACCCTCGAAGGGTA
1 AAATTACTAAAATACCCTCGAAGGGTA
* *
39128833 AAATTATTTAAATACC
1 AAATTACTAAAATACC
39128849 TTTAAAAGTA
Statistics
Matches: 286, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 21 0.07
27 264 0.92
28 1 0.00
ACGTcount: A:0.44, C:0.20, G:0.14, T:0.21
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGAAGGGTA
Found at i:39128630 original size:81 final size:81
Alignment explanation
Indices: 39128491--39128865 Score: 463
Period size: 81 Copynumber: 4.7 Consensus size: 81
39128481 GCAAATGACT
* * * * *
39128491 AAAATACCCTCGATGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATTA-TCAAAATACCCT
1 AAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTACT-AAAATACCCT
* *
39128555 CAAAGAGTAAAATTACC
65 CGAAGGGTAAAATTACC
*
39128572 AAAATACCCTCGAAGGGTTAAATTATCAAAATACCCTCAAAGGGTAAAATTACTAAAATACCCTC
1 AAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTACTAAAATACCCTC
39128637 GAAGGGTAAAATTACC
66 GAAGGGTAAAATTACC
* * * * **
39128653 AAAATACCCTCGAAGGGTTAAATCATCGAAATACCCTCGAAA-GGAAAAATTACCGAAATACCCT
1 AAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTC-AAAGGGTAAAATTACTAAAATACCCT
39128717 CGAAGGGTAAAATTACC
65 CGAAGGGTAAAATTACC
* * * * *
39128734 GAAACA-CCTTGAAGGGTAAAATTA-CTACAATACCCTCAAAGGGTAAAATTACTGAAATACCCT
1 AAAATACCCTCGAAGGGTAAAATTATC-AAAATACCCTCAAAGGGTAAAATTACTAAAATACCCT
*
39128797 CGAAGGATAAAATTACC
65 CGAAGGGTAAAATTACC
** * * *
39128814 AAAATACCCTCGAAGGGTAAAATTATTTAAATACCTTTAAA-AGTAAAATTAC
1 AAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTAC
39128866 CGATTGAGCA
Statistics
Matches: 256, Mismatches: 32, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
79 4 0.02
80 74 0.29
81 174 0.68
82 4 0.02
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.22
Consensus pattern (81 bp):
AAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTACTAAAATACCCTC
GAAGGGTAAAATTACC
Found at i:39128848 original size:54 final size:54
Alignment explanation
Indices: 39128491--39128838 Score: 473
Period size: 54 Copynumber: 6.5 Consensus size: 54
39128481 GCAAATGACT
* * *
39128491 AAAATACCCTCGATGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATTATC
1 AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
* * * * *
39128545 AAAATACCCTCAAAGAGTAAAATTACCAAAATACCCTCGAAGGGTTAAATTATC
1 AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
* **
39128599 AAAATACCCTCAAAGGGTAAAATTACTAAAATACCCTCGAAGGGTAAAATTACC
1 AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
* * * * *
39128653 AAAATACCCTCGAAGGGTTAAATCATCGAAATACCCTCGAAAGGAAAAATTACC
1 AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
* * * *
39128707 GAAATACCCTCGAAGGGTAAAATTACCGAAACA-CCTTGAAGGGTAAAATTACT
1 AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
* * * *
39128760 ACAATACCCTCAAAGGGTAAAATTACTGAAATACCCTCGAAGGATAAAATTACC
1 AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
39128814 AAAATACCCTCGAAGGGTAAAATTA
1 AAAATACCCTCGAAGGGTAAAATTA
39128839 TTTAAATACC
Statistics
Matches: 256, Mismatches: 37, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
53 44 0.17
54 212 0.83
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.20
Consensus pattern (54 bp):
AAAATACCCTCGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACC
Found at i:39131588 original size:39 final size:40
Alignment explanation
Indices: 39131545--39131712 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
39131535 CTCGTTCAAG
* * * *
39131545 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
39131584 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
39131624 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
39131664 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
39131704 TGCCTTCGG
1 TGCCTTCGG
39131713 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:39131696 original size:80 final size:80
Alignment explanation
Indices: 39131580--39131765 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
39131570 AGTAACTCAT
* * *
39131580 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
39131644 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
39131659 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
39131723 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
39131740 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
39131766 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:39131725 original size:40 final size:40
Alignment explanation
Indices: 39131582--39131765 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
39131572 TAACTCATAC
* *
39131582 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
39131622 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
39131662 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
39131702 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
39131743 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
39131766 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:39136767 original size:4 final size:4
Alignment explanation
Indices: 39136760--39136804 Score: 72
Period size: 4 Copynumber: 11.2 Consensus size: 4
39136750 TGGTGATTAG
**
39136760 TTGT TTGT TTGT TTGT TTGT TTGT AAGT TTGT TTGT TTGT TTGT T
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT T
39136805 GGCTTAAGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.04, C:0.00, G:0.24, T:0.71
Consensus pattern (4 bp):
TTGT
Found at i:39138866 original size:20 final size:20
Alignment explanation
Indices: 39138783--39138868 Score: 111
Period size: 20 Copynumber: 4.3 Consensus size: 20
39138773 ATCAAATGTC
*
39138783 ATTTCCATTTC-GATAACCA
1 ATTTCCATTTCATATAACCA
* *
39138802 ATTTCCATTTCATATATCAA
1 ATTTCCATTTCATATAACCA
* *
39138822 ATTCCCATTTCATATATCCA
1 ATTTCCATTTCATATAACCA
39138842 ATTTCCATTTCATATAACCA
1 ATTTCCATTTCATATAACCA
*
39138862 TTTTCCA
1 ATTTCCA
39138869 CCTAATGAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
19 11 0.19
20 47 0.81
ACGTcount: A:0.31, C:0.26, G:0.01, T:0.42
Consensus pattern (20 bp):
ATTTCCATTTCATATAACCA
Found at i:39141953 original size:22 final size:19
Alignment explanation
Indices: 39141928--39141982 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 19
39141918 AAATCGGCAA
39141928 GGAAAAGAAGACAAAGAAAAT
1 GGAAAAGAAGA-AAAG-AAAT
* *
39141949 GGGAAAACAAGAAAAGTAAT
1 -GGAAAAGAAGAAAAGAAAT
39141969 GGAAAAG-AGAAAAG
1 GGAAAAGAAGAAAAG
39141983 GGAAAATGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 6 0.20
20 3 0.10
21 4 0.13
22 10 0.33
ACGTcount: A:0.64, C:0.04, G:0.27, T:0.05
Consensus pattern (19 bp):
GGAAAAGAAGAAAAGAAAT
Found at i:39146607 original size:7 final size:7
Alignment explanation
Indices: 39146595--39146623 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
39146585 GCCACAACTT
39146595 ACCACTC
1 ACCACTC
39146602 ACCACTC
1 ACCACTC
39146609 ACCACTC
1 ACCACTC
39146616 ACCACTC
1 ACCACTC
39146623 A
1 A
39146624 TTGCCTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.55, G:0.00, T:0.14
Consensus pattern (7 bp):
ACCACTC
Found at i:39147719 original size:17 final size:18
Alignment explanation
Indices: 39147683--39147724 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
39147673 TGTTCGCTAA
* *
39147683 TTTTATATTTTATTTCAT
1 TTTTATATTTTATGTAAT
39147701 TTTTAT-TTTTATGTAAT
1 TTTTATATTTTATGTAAT
*
39147718 TTATATA
1 TTTTATA
39147725 ATATAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTTATATTTTATGTAAT
Found at i:39152928 original size:19 final size:19
Alignment explanation
Indices: 39152882--39152933 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
39152872 TAAAAAACAC
* *
39152882 AAATATATATAAACTC-AA
1 AAATATATAAAAATTCAAA
39152900 AAA-A-ATAAAAATTCAAA
1 AAATATATAAAAATTCAAA
39152917 AAATATATAAAAATTCA
1 AAATATATAAAAATTCA
39152934 TGAAATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 8 0.28
17 6 0.21
18 4 0.14
19 11 0.38
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATATATAAAAATTCAAA
Found at i:39161066 original size:102 final size:102
Alignment explanation
Indices: 39160922--39161153 Score: 376
Period size: 102 Copynumber: 2.3 Consensus size: 102
39160912 ATTGAATAAA
* *
39160922 AAGGGGGTTGCTAAGTGTTGATTCCCCCCGAGGGGTTGCTAAGTGCTGA-TTCCCCTATTCATTG
1 AAGGGGGTTGCTAAGTGCTGATT-CCCCCGAGGGGTTGCTAAGTGCTGATTTCCCCAATT-ATTG
**
39160986 GTGGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG
64 GTGGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTG
* *
39161025 AAGGGGGTTGCTAAATGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTTCCCGAATTATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTTCCCCAATTATTGGT
39161090 GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTG
*
39161127 AAAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
39161154 GACTCATTAG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
102 91 0.76
103 29 0.24
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTTCCCCAATTATTGGT
GGTTGCTAAGTGCTGAACCCACCGTATCTTAAATGTG
Found at i:39162742 original size:9 final size:9
Alignment explanation
Indices: 39162728--39162757 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
39162718 ATCTGAATGT
39162728 TCCACCTCC
1 TCCACCTCC
39162737 TCCACCTCC
1 TCCACCTCC
*
39162746 TCCACCCCC
1 TCCACCTCC
39162755 TCC
1 TCC
39162758 TATTCCTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.70, G:0.00, T:0.20
Consensus pattern (9 bp):
TCCACCTCC
Found at i:39168503 original size:33 final size:33
Alignment explanation
Indices: 39168461--39168713 Score: 138
Period size: 33 Copynumber: 7.5 Consensus size: 33
39168451 TCTCCCGAGG
39168461 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* *
39168494 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA--TT-CAT-TG--GT
*
39168535 GAGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 G-GTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* * *
39168563 GGTTGCTAAGTGATGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
* *
39168596 GGTTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CC-TA--TT-CAT-T---GGT
*
39168638 GGTTGCTAAGTGCTGATTCCCC----C---GAGA
1 GGTTGCTAAGTGCTGATTCCCCTATTCATTG-GT
*
39168665 GGTTGCTAAGTGCTGATTCCCCGAATT-ATTGGT
1 GGTTGCTAAGTGCTGATTCCCC-TATTCATTGGT
39168698 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
39168714 ACCCACCGTA
Statistics
Matches: 173, Mismatches: 14, Indels: 66
0.68 0.06 0.26
Matches are distributed among these distances:
26 1 0.01
27 43 0.25
28 1 0.01
29 1 0.01
31 3 0.02
32 2 0.01
33 57 0.33
34 5 0.03
35 3 0.02
37 3 0.02
38 4 0.02
39 3 0.02
41 6 0.03
42 41 0.24
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
Done.