Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 136 of 228
Found at i:40736484 original size:26 final size:26
Alignment explanation
Indices: 40736429--40736484 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
40736419 ATACCATTAC
* ** *
40736429 TGGCAGCTTTGCTGCGATATTGTTGC
1 TGGCAGCTTTGCTGCGATACTACTGA
40736455 TGGCAGCTTTGCTGCGATACTACTGA
1 TGGCAGCTTTGCTGCGATACTACTGA
40736481 TGGC
1 TGGC
40736485 TTTTTGTCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.14, C:0.21, G:0.30, T:0.34
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCGATACTACTGA
Found at i:40736528 original size:32 final size:31
Alignment explanation
Indices: 40736473--40736567 Score: 102
Period size: 32 Copynumber: 3.0 Consensus size: 31
40736463 TTGCTGCGAT
40736473 ACTACTGATGGCTTTTTGT-CGATCATATTACC
1 ACTACTGATGG--TTTTGTCCGATCATATTACC
* * *
40736505 ATTACTGATGGTTTTGTACCGATCATATCACT
1 ACTACTGATGGTTTTGT-CCGATCATATTACC
* *
40736537 ACTACTGATGGCTTTGTGCCAATCATATTAC
1 ACTACTGATGGTTTTGT-CCGATCATATTAC
40736568 TGTACTTATG
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.11
32 47 0.89
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
ACTACTGATGGTTTTGTCCGATCATATTACC
Found at i:40745778 original size:20 final size:21
Alignment explanation
Indices: 40745755--40745794 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
40745745 GTTTTAGGCA
*
40745755 TGTTTTGAAT-GTTTTATATG
1 TGTTTTGAATAGTTTAATATG
40745775 TGTTTTGAATAGTTTAATAT
1 TGTTTTGAATAGTTTAATAT
40745795 AGTTTGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.25, C:0.00, G:0.17, T:0.57
Consensus pattern (21 bp):
TGTTTTGAATAGTTTAATATG
Found at i:40745799 original size:20 final size:20
Alignment explanation
Indices: 40745756--40745799 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
40745746 TTTTAGGCAT
* *
40745756 GTTTTGAATGTTTTATATGT
1 GTTTTGAATGTTTAATATGA
40745776 GTTTTGAATAGTTTAATAT-A
1 GTTTTGAAT-GTTTAATATGA
40745796 GTTT
1 GTTT
40745800 GAAATGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.25, C:0.00, G:0.18, T:0.57
Consensus pattern (20 bp):
GTTTTGAATGTTTAATATGA
Found at i:40746311 original size:28 final size:28
Alignment explanation
Indices: 40746278--40746347 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 28
40746268 CTATGAATTA
*
40746278 TGAATGATTTTATATTTAGTTTAAGATT
1 TGAATGATTTTATATTTAGTTTAAGAGT
* *
40746306 TTAATGGTTTTTATATTTAGTTTAAGAGT
1 TGAAT-GATTTTATATTTAGTTTAAGAGT
*
40746335 TGAATGGTTTTAT
1 TGAATGATTTTAT
40746348 GATGTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 11 0.31
29 25 0.69
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (28 bp):
TGAATGATTTTATATTTAGTTTAAGAGT
Found at i:40746321 original size:29 final size:29
Alignment explanation
Indices: 40746285--40746345 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
40746275 TTATGAATGA
* *
40746285 TTTTATATTTAGTTTAAGATTTTAATGGT
1 TTTTATATTTAGTTTAAGAGTTGAATGGT
40746314 TTTTATATTTAGTTTAAGAGTTGAATGGT
1 TTTTATATTTAGTTTAAGAGTTGAATGGT
40746343 TTT
1 TTT
40746346 ATGATGTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.57
Consensus pattern (29 bp):
TTTTATATTTAGTTTAAGAGTTGAATGGT
Found at i:40755327 original size:19 final size:19
Alignment explanation
Indices: 40755303--40755345 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
40755293 ATCATATACC
40755303 TATTAAATCATTGTTCACA
1 TATTAAATCATTGTTCACA
40755322 TATTAAATCATTGTTCACA
1 TATTAAATCATTGTTCACA
40755341 -ATTAA
1 TATTAA
40755346 GCCTTTCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.42
Consensus pattern (19 bp):
TATTAAATCATTGTTCACA
Found at i:40756116 original size:12 final size:12
Alignment explanation
Indices: 40756098--40756127 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
40756088 AGCCACATGC
40756098 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
40756110 TCGTGTGCTAGG
1 CCGTGTGCTAGG
40756122 CCGTGT
1 CCGTGT
40756128 AACAACCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:40762579 original size:16 final size:16
Alignment explanation
Indices: 40762559--40762614 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
40762549 TTGGTTTACT
*
40762559 GTAATAGAATAGAGGT
1 GTAATAGAATAGAGGC
*
40762575 GTAATGGAATAGAGGC
1 GTAATAGAATAGAGGC
*
40762591 GTAATGGAATAGAGGC
1 GTAATAGAATAGAGGC
40762607 GTAATAGA
1 GTAATAGA
40762615 TAATTCTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.41, C:0.04, G:0.34, T:0.21
Consensus pattern (16 bp):
GTAATAGAATAGAGGC
Found at i:40762646 original size:46 final size:46
Alignment explanation
Indices: 40762593--40762731 Score: 237
Period size: 46 Copynumber: 3.1 Consensus size: 46
40762583 ATAGAGGCGT
*
40762593 AATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
*
40762639 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTCAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
*
40762685 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
40762729 AAT
1 AAT
40762732 AGAAGTGTAA
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
44 23 0.26
45 3 0.03
46 63 0.71
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
Found at i:40766801 original size:45 final size:45
Alignment explanation
Indices: 40766737--40766830 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
40766727 AACAGATACT
* * *
40766737 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
*
40766782 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
40766827 CGGT
1 CGGT
40766831 TCACATGGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:40766893 original size:51 final size:50
Alignment explanation
Indices: 40766827--40767022 Score: 205
Period size: 51 Copynumber: 3.9 Consensus size: 50
40766817 CAATGATGTT
* * *
40766827 CGGTTCACATGGTAGCCTACACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCA-TACCATC
* * ** * * *
40766878 CGATACACATAGTAGCCTGCACATAGTACTACACACGTGATTGAAACTATT
1 CGGTACACATAGTAGCCTACACATAGTACTACACACGTGA-CCATACCATC
* * * * *
40766929 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCATACCA-TC
* *
40766979 CGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAT
1 CGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCAT
40767023 CACTTTCACT
Statistics
Matches: 116, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.32
51 76 0.66
52 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
CGGTACACATAGTAGCCTACACATAGTACTACACACGTGACCATACCATC
Found at i:40767042 original size:101 final size:101
Alignment explanation
Indices: 40766832--40767018 Score: 241
Period size: 101 Copynumber: 1.8 Consensus size: 101
40766822 ATGTTCGGTT
* * *
40766832 CACATGGTAGCCTACACATAGTACTACACATGTGACCATTACCATCCGATACACATAGTAGCCTG
1 CACATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTA
** *
40766897 CACATAGTACTACACACGTGATTGAAACTATTCGGTA
65 CACATAGTACTACACACGTGATCCAAACTATTCCGTA
* * * * *
40766934 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTA
1 CACATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACATAGTAGCCTA
*
40766998 CACTTAGTACTACACACGTGA
65 CACATAGTACTACACACGTGA
40767019 CCATCACTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 33 0.44
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
CACATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTAC
ACATAGTACTACACACGTGATCCAAACTATTCCGTA
Found at i:40769592 original size:16 final size:17
Alignment explanation
Indices: 40769561--40769594 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
40769551 CAATTTAGTC
*
40769561 CAAAATTCATACTTTTA
1 CAAAATTCACACTTTTA
40769578 CAAAATT-ACACTTTTA
1 CAAAATTCACACTTTTA
40769594 C
1 C
40769595 TCCTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (17 bp):
CAAAATTCACACTTTTA
Found at i:40771999 original size:101 final size:102
Alignment explanation
Indices: 40771882--40772066 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
40771872 AAAGTGATGG
* *
40771882 TCACGTGTGTAATACTATGTGCATGCTACTACGTGTACCAGAATGAT-A-GGTCGCATGTGTAAT
1 TCACGTGTGTAATACTATGTGCAGGCTACTACGTGTA-CAGAATGATAATGGTCACATGTGTAAT
*
40771945 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
65 ACTATGTGCAGACTACTATGCGTACCAGATAGTTTCGA
* * * * * *
40771983 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATAGGATGGTAATGGTCATATGTGTAGTA
1 TCACGTGTGTAATACTATGTGCAGGCTACTACGTGTACAGAATGATAATGGTCACATGTGTAATA
40772048 CTATGTGCAGACTACTATG
66 CTATGTGCAGACTACTATG
40772067 TGAACAGAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 6 0.08
101 36 0.49
102 31 0.42
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAATACTATGTGCAGGCTACTACGTGTACAGAATGATAATGGTCACATGTGTAATA
CTATGTGCAGACTACTATGCGTACCAGATAGTTTCGA
Found at i:40772004 original size:51 final size:50
Alignment explanation
Indices: 40771882--40772015 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
40771872 AAAGTGATGG
* * *
40771882 TCACGTGTGTAATACTATGTGCATGCTACTACGTGTACCAGAATGATAGG
1 TCACGTGTGTAATACTATGTGCAGGCTACTACGCGTACCAGAATGATAGA
* * * * *
40771932 TCGCATGTGTAATACTATGTGCAGGCTACTATGCGTACCAG-ATAGTTTCGA
1 TCACGTGTGTAATACTATGTGCAGGCTACTACGCGTACCAGAAT-G-ATAGA
*
40771983 TCACGTGTGTAGTACTATGTGCAGGCTACTACG
1 TCACGTGTGTAATACTATGTGCAGGCTACTACG
40772016 TGTATAGGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 2 0.03
50 37 0.53
51 31 0.44
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAATACTATGTGCAGGCTACTACGCGTACCAGAATGATAGA
Found at i:40772043 original size:51 final size:51
Alignment explanation
Indices: 40771878--40772064 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 51
40771868 AGTGAAAGTG
* * * *
40771878 ATGGTCACGTGTGTAATACTATGTGCATGCTACTACGTGTACCAGAATGAT
1 ATGGTCACATGTGTAATACTATGTGCAGGCTACTACGTGTACCAGGATGGT
* * * *
40771929 A-GGTCGCATGTGTAATACTATGTGCAGGCTACTATGCGTACCA-GATAGT
1 ATGGTCACATGTGTAATACTATGTGCAGGCTACTACGTGTACCAGGATGGT
* * * * *
40771978 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-TAGGATGGT
1 AT-GGTCACATGTGTAATACTATGTGCAGGCTACTACGTGTACCAGGATGGT
* * *
40772029 AATGGTCATATGTGTAGTACTATGTGCAGACTACTA
1 -ATGGTCACATGTGTAATACTATGTGCAGGCTACTA
40772065 TGTGAACAGA
Statistics
Matches: 110, Mismatches: 22, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
49 3 0.03
50 38 0.35
51 68 0.62
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
ATGGTCACATGTGTAATACTATGTGCAGGCTACTACGTGTACCAGGATGGT
Found at i:40772126 original size:45 final size:45
Alignment explanation
Indices: 40772075--40772163 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
40772065 TGTGAACAGA
* * *
40772075 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCGG
40772120 ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCG
40772164 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCCACCGG
Found at i:40775263 original size:49 final size:50
Alignment explanation
Indices: 40775170--40775267 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 50
40775160 ACCATGACAA
* * **
40775170 TATGTGATATGTGATTTCCGTATAAGACCATGGCTGGGTTATGGCATCGG
1 TATGTGATATGTGATTTACGTATAAGACCATAGCTGGACTATGGCATCGG
* * *
40775220 TATGTGTTATGTGA-TTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 TATGTGATATGTGATTTACGTATAAGACCATAGCTGGACTATGGCATCG
40775268 AGAAAACGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 28 0.68
50 13 0.32
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (50 bp):
TATGTGATATGTGATTTACGTATAAGACCATAGCTGGACTATGGCATCGG
Found at i:40777856 original size:51 final size:51
Alignment explanation
Indices: 40777796--40777939 Score: 173
Period size: 51 Copynumber: 2.8 Consensus size: 51
40777786 AAAGTTATGG
* * *
40777796 TCACATGTGTTGTACTATGTGCAGGCTACTATGCGTACCGAATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGTAAT-GA
* * * * * *
40777847 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGTAATGA
* *
40777898 TCACATGTGTAGTACTATGTGCAGACTACTATGTGAACCGAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAA
40777940 CATCATTGAT
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
51 76 0.99
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGTAATGA
Found at i:40777990 original size:45 final size:45
Alignment explanation
Indices: 40777934--40778024 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
40777924 TACTATGTGA
* * *
40777934 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
*
40777979 ACCGGACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
40778024 A
1 A
40778025 TCGAGTATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
Found at i:40796713 original size:46 final size:46
Alignment explanation
Indices: 40796661--40796764 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 46
40796651 TACCCATTTC
*
40796661 GTTAAACCTACACAAATCTAATAATAGTACCTAGTCAC-CTGATAGG
1 GTTAAACCTACACAAATCAAATAATAGTACCTAGTCACTC-GATAGG
* * * * *
40796707 GTTAAACCTACAGAAATCAAATAATAGTGCTTGGTCACTCGTTAGG
1 GTTAAACCTACACAAATCAAATAATAGTACCTAGTCACTCGATAGG
40796753 GTTAAACCTACA
1 GTTAAACCTACA
40796765 TGATTCGAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
46 50 0.98
47 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (46 bp):
GTTAAACCTACACAAATCAAATAATAGTACCTAGTCACTCGATAGG
Found at i:40796776 original size:46 final size:46
Alignment explanation
Indices: 40796661--40796806 Score: 136
Period size: 46 Copynumber: 3.2 Consensus size: 46
40796651 TACCCATTTC
* * * ** * *
40796661 GTTAAACCTACACAAATCTAATAATAGTACCTAGTCACCTGA-TAGG
1 GTTAAACCTACAGAAATCAAATAACAGTGTCTGGTCACC-CATTAGG
* * *
40796707 GTTAAACCTACAGAAATCAAATAATAGTG-CTTGGTCACTCGTTAGG
1 GTTAAACCTACAGAAATCAAATAACAGTGTC-TGGTCACCCATTAGG
* *
40796753 GTTAAACCTACATG-ATTCGAATAACAGTGTCTGGTCACCCATTAGG
1 GTTAAACCTACA-GAAATCAAATAACAGTGTCTGGTCACCCATTAGG
40796799 GTTAAACC
1 GTTAAACC
40796807 AACACAACAA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 81 0.96
47 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (46 bp):
GTTAAACCTACAGAAATCAAATAACAGTGTCTGGTCACCCATTAGG
Found at i:40799035 original size:40 final size:40
Alignment explanation
Indices: 40798936--40799082 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 40
40798926 ATGCCCAGAA
* *
40798936 GAGCCATACCTACTAAATCTATTGAAACGTATGTG-TTTT
1 GAGCCATACCTACTAAATCTATTGAAATGTATGCGCTTTT
* * * *
40798975 CAAGGCATACTTACTGAATCTATTGAAATGTATGCGCTTTT
1 -GAGCCATACCTACTAAATCTATTGAAATGTATGCGCTTTT
* * * *
40799016 GAGCCACACCTATTAAATCTAATAAAATGTATGCGCTTTT
1 GAGCCATACCTACTAAATCTATTGAAATGTATGCGCTTTT
* * *
40799056 GAGCCATACCTGCTGAATCTACTGAAA
1 GAGCCATACCTACTAAATCTATTGAAA
40799083 AGATTACTCT
Statistics
Matches: 86, Mismatches: 20, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
40 82 0.95
41 4 0.05
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (40 bp):
GAGCCATACCTACTAAATCTATTGAAATGTATGCGCTTTT
Found at i:40799435 original size:18 final size:19
Alignment explanation
Indices: 40799406--40799441 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
40799396 ACTTGTATGC
*
40799406 TTAAGTTGAAATGAATGAT
1 TTAAGTTGAAATCAATGAT
40799425 TTAAG-TGAAATCAATGA
1 TTAAGTTGAAATCAATGA
40799442 CCCTATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.33
Consensus pattern (19 bp):
TTAAGTTGAAATCAATGAT
Found at i:40808166 original size:2 final size:2
Alignment explanation
Indices: 40808159--40808197 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
40808149 GTAGTGTAAA
*
40808159 TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
40808198 TTCTTTATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (2 bp):
TG
Found at i:40810031 original size:51 final size:50
Alignment explanation
Indices: 40809904--40810046 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 50
40809894 AAAGTTATGG
* *
40809904 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATAGA
* * * * * *
40809954 TCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCGG-ATAGTTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAT-G-ATAGA
* *
40810005 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGA
40810047 TGGTAATGGT
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.03
50 37 0.49
51 37 0.49
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGAATGATAGA
Found at i:40810086 original size:51 final size:50
Alignment explanation
Indices: 40809899--40810075 Score: 212
Period size: 51 Copynumber: 3.5 Consensus size: 50
40809889 AACTGAAAGT
* *
40809899 TATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGA
1 TATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGG
* * * * *
40809950 TA-GGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCGGATAG
1 TATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGG
* * * *
40809999 TTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGG
1 TAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGG
*
40810050 TAATGGTCACATGTATAGTACTATGT
1 T-ATGGTCACATGTGTAGTACTATGT
40810076 ATAGGATACT
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
49 3 0.03
50 38 0.37
51 61 0.59
52 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (50 bp):
TATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGG
Found at i:40816812 original size:25 final size:25
Alignment explanation
Indices: 40816783--40816830 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
40816773 GTTACCGATT
*
40816783 TTAGCTCGTATGAGCTTACCATTAC
1 TTAGCTCGCATGAGCTTACCATTAC
40816808 TTAGCTCGCATGAGCTTACCATT
1 TTAGCTCGCATGAGCTTACCATT
40816831 GTTCAGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (25 bp):
TTAGCTCGCATGAGCTTACCATTAC
Found at i:40819705 original size:17 final size:17
Alignment explanation
Indices: 40819680--40819718 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
40819670 ATAACATTAA
* *
40819680 AACATTATTTACTCTGT
1 AACACTATTTAATCTGT
40819697 AACACTATTTAATCTGT
1 AACACTATTTAATCTGT
40819714 AACAC
1 AACAC
40819719 CCCAAACCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (17 bp):
AACACTATTTAATCTGT
Found at i:40825930 original size:26 final size:26
Alignment explanation
Indices: 40825887--40825936 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
40825877 TGAGCAGGCC
* *
40825887 CATTTCACATCTCATGTGAGCATACT
1 CATTTCACAACTCATGTGAACATACT
**
40825913 CATTTCACAACTTGTGTGAACATA
1 CATTTCACAACTCATGTGAACATA
40825937 TATGTAAAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (26 bp):
CATTTCACAACTCATGTGAACATACT
Found at i:40833198 original size:13 final size:14
Alignment explanation
Indices: 40833174--40833202 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
40833164 AATTATTAAA
40833174 TTACTAATTTAACC
1 TTACTAATTTAACC
40833188 TTACTAA-TTAACC
1 TTACTAATTTAACC
40833201 TT
1 TT
40833203 TAAATCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (14 bp):
TTACTAATTTAACC
Found at i:40840399 original size:502 final size:502
Alignment explanation
Indices: 40839457--40840927 Score: 2542
Period size: 502 Copynumber: 3.0 Consensus size: 502
40839447 CATAATTTCA
* * *
40839457 TGATATATTATATTGAGCACTTACTGTTCCTTTCCTTTTCATGCCCATTGAACCATTCAGAATAA
1 TGATATATTATATTGAACACTTACCGTTCCTTTCCTTTTCATACCCATTGAACCATTCAGAATAA
* * *
40839522 CATCAGATATGTGGGAAATCTCACATGAATTATGCTAAACATATAACCTTTCATTTTCCTTTACA
66 CATCAGATACGTGGGAAATCTCACATGAATTGTGCTAAACATATAACCTTTCATTTTCCGTTACA
*
40839587 TTGTTGATCACACGAGCTATGAAATGGGCCTACTCATACGAGCTGTGGGTCAGAATGTAAGCTAC
131 TTGTTGATCACACGAGCTATGAAATGGGCCTACTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
* * * *
40839652 ACGATACTGCTCGCACAAGCTGTGGAGTATTTGCAACAAATGCAGGACCTCATCCATCGATAAGA
196 ACGATGCTGCTCGCACAAGCTGTGGAGTATTCGCAACAAATGCAGGACCTCATCCATCGATAGGG
* *
40839717 CATTCTAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTACCCTACGAATTCC
261 CATTCAAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTATCCTACGAATTCC
*
40839782 TAAGGTTCTAACGTGGCTCGATAGTCATCATGACATCATTAGATTTACATCATTTAGTTACATGC
326 TAAGGTTCTAACGTGGCTCGATAGTCATCATGACATCGTTAGATTTACATCATTTAGTTACATGC
*
40839847 CAAATAACATATTGACATATAGATCAACATAACATTTAAATGTTATTTAATCATACGAACTTACC
391 CAAATAACATATTGACATATAGATCAACATAACATTAAAATGTTATTTAATCATACGAACTTACC
40839912 TCGACAATCAAAGTGTAAAAACATAGTCGATCAATATAATAACATAT
456 TCGACAATCAAAGTGTAAAAACATAGTCGATCAATATAATAACATAT
40839959 TGATATATTATATTGAACACTTACCGTTCCTTTCCTTTTCATACCCATTGAACCATTCAGAATAA
1 TGATATATTATATTGAACACTTACCGTTCCTTTCCTTTTCATACCCATTGAACCATTCAGAATAA
* * *
40840024 CATTAGATACGTGGGAAATCTCACATGAATTGTGCTAAACATATAACCTTTTATTTTTCGTTACA
66 CATCAGATACGTGGGAAATCTCACATGAATTGTGCTAAACATATAACCTTTCATTTTCCGTTACA
*
40840089 TTGTTGATCACACGAGCTATGAAATGGGCCTACTCACACGAGCTATGGGTCAGAATGTAAGCTAC
131 TTGTTGATCACACGAGCTATGAAATGGGCCTACTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
40840154 ACGATGCTGCTCGCACAAGCTGTGGAGTATTCGCAACAAATGCAGGACCTCATCCATCGATAGGG
196 ACGATGCTGCTCGCACAAGCTGTGGAGTATTCGCAACAAATGCAGGACCTCATCCATCGATAGGG
40840219 CATTCAAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTATCCTACGAATTCC
261 CATTCAAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTATCCTACGAATTCC
*
40840284 TAAGGTTCTAACGTGGCTCGATAGTAATCATGACATCGTTAGATTTACATCATTTAGTTACATGC
326 TAAGGTTCTAACGTGGCTCGATAGTCATCATGACATCGTTAGATTTACATCATTTAGTTACATGC
*
40840349 CAAATAACATATTGACATATAGATCAACATAATATTAAAATGTTATTTAATCATACGAACTTACC
391 CAAATAACATATTGACATATAGATCAACATAACATTAAAATGTTATTTAATCATACGAACTTACC
* * *
40840414 TCAACAATCAAAGTGTGAAAACATAGCCGATCAATATAATAACATAT
456 TCGACAATCAAAGTGTAAAAACATAGTCGATCAATATAATAACATAT
40840461 TGATATATTATATTGAACACTTACCGTTCCTTTCCTTTTCATACCCATTGAACCATTCAGAATAA
1 TGATATATTATATTGAACACTTACCGTTCCTTTCCTTTTCATACCCATTGAACCATTCAGAATAA
40840526 CATCAGATACGTGGGAAATCTCACATGAATTGTGCTAAACATATAACCTTTCATTTTCCGTTACA
66 CATCAGATACGTGGGAAATCTCACATGAATTGTGCTAAACATATAACCTTTCATTTTCCGTTACA
40840591 TTGTTGATCACACGAGCTATGAAATGGGCCTACTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
131 TTGTTGATCACACGAGCTATGAAATGGGCCTACTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
*
40840656 ACGATGCTGCTCGCACAAGCTGTGGAGTATTCGCAACAAATACAGGACCTCATCCATCGATAGGG
196 ACGATGCTGCTCGCACAAGCTGTGGAGTATTCGCAACAAATGCAGGACCTCATCCATCGATAGGG
40840721 CATTCAAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTATCCTACG------
261 CATTCAAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTATCCTACGAATTCC
* **
40840780 -AA-----T---GTGGCTCGATAGTCATAATGACATCGTTAGATTT-CAATCGCTTAGTTACATG
326 TAAGGTTCTAACGTGGCTCGATAGTCATCATGACATCGTTAGATTTAC-ATCATTTAGTTACATG
* * *
40840835 CCAAATAACATATTGACATATAGATCAACATAACATTAAAACGCTATTTTATCATACGAACTTAC
390 CCAAATAACATATTGACATATAGATCAACATAACATTAAAATGTTATTTAATCATACGAACTTAC
40840900 CTCGACAATCAAAGTGTAAAAACATAGT
455 CTCGACAATCAAAGTGTAAAAACATAGT
40840928 TGATTAATCT
Statistics
Matches: 928, Mismatches: 40, Indels: 17
0.94 0.04 0.02
Matches are distributed among these distances:
486 1 0.00
487 132 0.14
490 1 0.00
495 2 0.00
502 792 0.85
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (502 bp):
TGATATATTATATTGAACACTTACCGTTCCTTTCCTTTTCATACCCATTGAACCATTCAGAATAA
CATCAGATACGTGGGAAATCTCACATGAATTGTGCTAAACATATAACCTTTCATTTTCCGTTACA
TTGTTGATCACACGAGCTATGAAATGGGCCTACTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
ACGATGCTGCTCGCACAAGCTGTGGAGTATTCGCAACAAATGCAGGACCTCATCCATCGATAGGG
CATTCAAGACTAGCACCCGAAACATGAAAACCCTAATGACATGTCATTTGTATCCTACGAATTCC
TAAGGTTCTAACGTGGCTCGATAGTCATCATGACATCGTTAGATTTACATCATTTAGTTACATGC
CAAATAACATATTGACATATAGATCAACATAACATTAAAATGTTATTTAATCATACGAACTTACC
TCGACAATCAAAGTGTAAAAACATAGTCGATCAATATAATAACATAT
Found at i:40843844 original size:20 final size:20
Alignment explanation
Indices: 40843821--40843860 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
40843811 TAGTAAATTG
*
40843821 GTAAAGAAAAGAAAAAATAA
1 GTAAAGAAAACAAAAAATAA
* *
40843841 GTAAATAAAACACAAAATAA
1 GTAAAGAAAACAAAAAATAA
40843861 ATATGAGATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.05, G:0.10, T:0.12
Consensus pattern (20 bp):
GTAAAGAAAACAAAAAATAA
Found at i:40850112 original size:37 final size:37
Alignment explanation
Indices: 40850062--40850153 Score: 114
Period size: 37 Copynumber: 2.5 Consensus size: 37
40850052 AGTGCCGAGG
* *
40850062 CGTGTTATTGATTGGATTAGCTCTCATGAGCCTTTGA
1 CGTGTTATCGATTGGATTAGCTCTCATGAGCATTTGA
* * *
40850099 CGTGTTATCGATTGGACTAGCTCTCTTGAGCATTTGG
1 CGTGTTATCGATTGGATTAGCTCTCATGAGCATTTGA
* *
40850136 CATGTT-TCGGTTGGATTA
1 CGTGTTATCGATTGGATTA
40850154 CTTGTGTACT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 10 0.21
37 37 0.79
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.40
Consensus pattern (37 bp):
CGTGTTATCGATTGGATTAGCTCTCATGAGCATTTGA
Found at i:40862105 original size:18 final size:19
Alignment explanation
Indices: 40862063--40862107 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
40862053 TCAAGATCTT
40862063 AAATTAATGTGGTCCAAAG
1 AAATTAATGTGGTCCAAAG
40862082 AAATTAATGTGGTCCAAA-
1 AAATTAATGTGGTCCAAAG
40862100 AAATTAAT
1 AAATTAAT
40862108 TAGTACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.29
Consensus pattern (19 bp):
AAATTAATGTGGTCCAAAG
Found at i:40866576 original size:34 final size:34
Alignment explanation
Indices: 40866511--40866576 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
40866501 TAATCATGTC
**
40866511 GTTCATATTTCAAGTTCAACTAATTTTAAAAATA
1 GTTCATATTTCAAGTTCAACTAATTAAAAAAATA
*
40866545 GTTCATATTTCAAGTTCAACTGATTAAAAAAA
1 GTTCATATTTCAAGTTCAACTAATTAAAAAAA
40866577 AGCATTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (34 bp):
GTTCATATTTCAAGTTCAACTAATTAAAAAAATA
Found at i:40867752 original size:17 final size:17
Alignment explanation
Indices: 40867730--40867766 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
40867720 ATCAAAAAGC
40867730 TCTATT-TTCATTTCTTT
1 TCTATTGTTCATTT-TTT
40867747 TCTATTGTTCATTTTTT
1 TCTATTGTTCATTTTTT
40867764 TCT
1 TCT
40867767 TCCATAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.11, C:0.16, G:0.03, T:0.70
Consensus pattern (17 bp):
TCTATTGTTCATTTTTT
Found at i:40876068 original size:19 final size:18
Alignment explanation
Indices: 40876046--40876097 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
40876036 TATTAAAAAT
* *
40876046 TTTAACTTTTTATATATTC
1 TTTAATTTTTTAAAT-TTC
40876065 TTTATATTTTTTAAATTTC
1 TTTA-ATTTTTTAAATTTC
*
40876084 TATAATTTTTTAAA
1 TTTAATTTTTTAAA
40876098 ATAAATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 10 0.34
19 10 0.34
20 9 0.31
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTAATTTTTTAAATTTC
Found at i:40876123 original size:18 final size:17
Alignment explanation
Indices: 40876102--40876144 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
40876092 TTTAAAATAA
40876102 ATAAATTTTGAAACTTTT
1 ATAAATTTTGAAA-TTTT
*
40876120 ATAAATATTTTAAATTTT
1 ATAAAT-TTTGAAATTTT
*
40876138 AAAAATT
1 ATAAATT
40876145 ATTTTGTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 6 0.27
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
ATAAATTTTGAAATTTT
Found at i:40876149 original size:19 final size:20
Alignment explanation
Indices: 40876106--40876150 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
40876096 AAATAAATAA
*
40876106 ATTTTGAAACTTTTATAAAT
1 ATTTTGAAACTTTTAAAAAT
40876126 ATTTT-AAA-TTTTAAAAATT
1 ATTTTGAAACTTTTAAAAA-T
40876145 ATTTTG
1 ATTTTG
40876151 TAATTGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (20 bp):
ATTTTGAAACTTTTAAAAAT
Found at i:40876328 original size:18 final size:18
Alignment explanation
Indices: 40876305--40876339 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
40876295 GGTCTAGAGA
40876305 ATGCCTAAAGAAGATAAT
1 ATGCCTAAAGAAGATAAT
40876323 ATGCCTAAAGAAGATAA
1 ATGCCTAAAGAAGATAA
40876340 GGTCCCTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.20
Consensus pattern (18 bp):
ATGCCTAAAGAAGATAAT
Found at i:40878770 original size:4 final size:4
Alignment explanation
Indices: 40878753--40878788 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
40878743 AAAATAAATA
*
40878753 TAAT TTAT TAAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT T-AAT TAAT TAAT TAAT TAAT TAAT TAA
40878789 ATTTTCAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 26 0.90
5 3 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:40889710 original size:27 final size:28
Alignment explanation
Indices: 40889626--40889723 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
40889616 CATGAGATTG
* * * *
40889626 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
40889655 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
40889683 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
40889710 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
40889724 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:40889734 original size:27 final size:27
Alignment explanation
Indices: 40889654--40889736 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
40889644 TAAATTGTAC
* *
40889654 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
40889682 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
40889709 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
40889736 A
1 A
40889737 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:40889737 original size:29 final size:27
Alignment explanation
Indices: 40889626--40889737 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
40889616 CATGAGATTG
** * *
40889626 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
40889655 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
40889683 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
40889710 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
40889738 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:40901584 original size:31 final size:31
Alignment explanation
Indices: 40901549--40901717 Score: 92
Period size: 31 Copynumber: 5.3 Consensus size: 31
40901539 CTATTATTAA
* *
40901549 TTAAAAATTTTAATTATATCTATCAAAGTTT
1 TTAAAAATTTTAATTAAATCTATCAAAATTT
* *
40901580 TTAAAAATTATT-ATTAAATCTTTGAAAATTT
1 TTAAAAATT-TTAATTAAATCTATCAAAATTT
* * * ***
40901611 TTAAAACTTTCAATTAGAGTCT-TCAGTTTTTTTTT
1 TTAAAAATTTTAATTA-AATCTATCA----AAATTT
* * * * * *
40901646 TTCAAAATTTTCATAAAATTTATAAAAATAT
1 TTAAAAATTTTAATTAAATCTATCAAAATTT
* *
40901677 TTGAAAATTTTAATTAAA-CTTACCAAAATTT
1 TTAAAAATTTTAATTAAATC-TATCAAAATTT
40901708 TTAAAAATTT
1 TTAAAAATTT
40901718 CCACTAAAAC
Statistics
Matches: 98, Mismatches: 31, Indels: 18
0.67 0.21 0.12
Matches are distributed among these distances:
30 1 0.01
31 72 0.73
32 6 0.06
34 3 0.03
35 16 0.16
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (31 bp):
TTAAAAATTTTAATTAAATCTATCAAAATTT
Found at i:40906824 original size:51 final size:50
Alignment explanation
Indices: 40906748--40906919 Score: 163
Period size: 51 Copynumber: 3.4 Consensus size: 50
40906738 ATGATGCTTA
* *
40906748 AATGCATGATTTAA-TTAA-GATGCAAAC-TAAATGAACAAATGAGTTACTT
1 AATGCATGACTTAATTTAATGATGCAAACTTAAAT-AACAAA-GAGTTACAT
**
40906797 AATGCATGACTTAATTTAATGATGCAAACTTAAACTAACATGGGAGTTACAT
1 AATGCATGACTTAATTTAATGATGCAAACTTAAA-TAACA-AAGAGTTACAT
* * * * * *
40906849 AAAGCATGTCAT-ATTTTATGATGCAAACTTAACTAACATGAGAGTTACAT
1 AATGCATGACTTAATTTAATGATGCAAACTTAAATAACA-AAGAGTTACAT
* *
40906899 AATGCATGACTTTATTAAATG
1 AATGCATGACTTAATTTAATG
40906920 TAGAACACAT
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
49 13 0.13
50 29 0.28
51 34 0.33
52 25 0.25
53 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (50 bp):
AATGCATGACTTAATTTAATGATGCAAACTTAAATAACAAAGAGTTACAT
Found at i:40906894 original size:50 final size:51
Alignment explanation
Indices: 40906810--40906906 Score: 160
Period size: 50 Copynumber: 1.9 Consensus size: 51
40906800 GCATGACTTA
*
40906810 ATTTAATGATGCAAACTTAAACTAACATGGGAGTTACATAAAGCATGTCAT
1 ATTTAATGATGCAAACTTAAACTAACATGAGAGTTACATAAAGCATGTCAT
* *
40906861 ATTTTATGATGCAAACTT-AACTAACATGAGAGTTACATAATGCATG
1 ATTTAATGATGCAAACTTAAACTAACATGAGAGTTACATAAAGCATG
40906907 ACTTTATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
50 26 0.60
51 17 0.40
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (51 bp):
ATTTAATGATGCAAACTTAAACTAACATGAGAGTTACATAAAGCATGTCAT
Found at i:40906968 original size:33 final size:34
Alignment explanation
Indices: 40906895--40906986 Score: 95
Period size: 33 Copynumber: 2.8 Consensus size: 34
40906885 CATGAGAGTT
* *
40906895 ACATAATGCATGAC-TTTATT-AA-ATGTAGAAC
1 ACATAATGCAAGACATTAATTAAAGATGTAGAAC
* * *
40906926 ACATAATGCATGCCA-TAATTAAAAGATGTAGATC
1 ACATAATGCAAGACATTAATT-AAAGATGTAGAAC
40906960 A-ATAATGCAAGACATTAATTAAAGATG
1 ACATAATGCAAGACATTAATTAAAGATG
40906987 CATTTAGTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
31 17 0.33
33 20 0.39
34 14 0.27
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (34 bp):
ACATAATGCAAGACATTAATTAAAGATGTAGAAC
Found at i:40907816 original size:46 final size:46
Alignment explanation
Indices: 40907749--40907913 Score: 219
Period size: 46 Copynumber: 3.6 Consensus size: 46
40907739 GGAAAATGAT
*
40907749 TAAGACCATAGTTGAAAGACATTATGGCACTATACCGGAGAATAAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
40907795 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
* * * * * *
40907841 TAAGACCATAGTTGAAAGA-ACTATGTCCCCATACCAGA-AATGAG
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
* *
40907885 TAAGACCAT-GACTGAAAGACGTTATGGCA
1 TAAGACCATAG-TTGAAAGACATTATGGCA
40907914 TCACGATTCT
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
43 1 0.01
44 20 0.19
45 20 0.19
46 64 0.61
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.21
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
Found at i:40907937 original size:45 final size:45
Alignment explanation
Indices: 40907882--40908096 Score: 326
Period size: 45 Copynumber: 4.8 Consensus size: 45
40907872 TACCAGAAAT
40907882 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
*
40907927 GAGTAAGACCATGACTGAAAGGCGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* * *
40907972 GAGTAAGACCATGAATGAAAGACGTTATGACATCATGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* *
40908017 GAGTAAGACCAT-AGCTGAAAGACGCTATGGCATCATGATTCTATC
1 GAGTAAGACCATGA-CTGAAAGACGTTATGGCATCACGATTCTATC
* *
40908062 GAGTAAGACCAT-AGTTGAAAGACGCTATGGCATCA
1 GAGTAAGACCATGA-CTGAAAGACGTTATGGCATCA
40908097 AGAATCAAAC
Statistics
Matches: 160, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
44 1 0.01
45 159 0.99
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
Found at i:40908118 original size:45 final size:45
Alignment explanation
Indices: 40908020--40908222 Score: 178
Period size: 45 Copynumber: 4.5 Consensus size: 45
40908010 TTCTATCGAG
* * * * * * * *
40908020 TAAGACCATAGCTGAAAGACGCTATGGCATCATGATTCTATCGAG
1 TAAGACCATAGTTGAAAGACACTATGGCATCAAGAATCAAACAAA
*
40908065 TAAGACCATAGTTGAAAGACGCTATGGCATCAAGAATCAAACAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCAAGAATCAAACAAA
* * * ***
40908110 T-AGAACCATGGTTGAAAGACACTATGGCAACACGACGGAAA-ATGAA
1 TAAG-ACCATAGTTGAAAGACACTATGGCATCAAGAATCAAACA--AA
* * * *
40908156 TAAGACCATGGTTGAAAGACACTATGGCATAAAG-ATGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCAAGAATCA-AACAAA
40908201 TAAGACCATAGTTGAAAGACAC
1 TAAGACCATAGTTGAAAGACAC
40908223 CATGCCACAC
Statistics
Matches: 132, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
44 3 0.02
45 94 0.71
46 32 0.24
47 3 0.02
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCATCAAGAATCAAACAAA
Found at i:40908118 original size:90 final size:90
Alignment explanation
Indices: 40907882--40908144 Score: 253
Period size: 90 Copynumber: 2.9 Consensus size: 90
40907872 TACCAGAAAT
* * * * * * * * *
40907882 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCAT-GACTGAA
1 GAGTAAGACCATGAATGAAAGACGCTATGACATCAAGAATCAAACAAATAAGACCATAG-CTGAA
* *
40907946 AGGCGTTATGGCATCACGATTCTATC
65 AGACGCTATGGCATCACGATTCTATC
* * * * * * *
40907972 GAGTAAGACCATGAATGAAAGACGTTATGACATCATGATTCTATCGAGTAAGACCATAGCTGAAA
1 GAGTAAGACCATGAATGAAAGACGCTATGACATCAAGAATCAAACAAATAAGACCATAGCTGAAA
*
40908037 GACGCTATGGCATCATGATTCTATC
66 GACGCTATGGCATCACGATTCTATC
* * * *
40908062 GAGTAAGACCAT-AGTTGAAAGACGCTATGGCATCAAGAATCAAACAAAT-AGAACCATGGTTGA
1 GAGTAAGACCATGA-ATGAAAGACGCTATGACATCAAGAATCAAACAAATAAG-ACCATAGCTGA
* *
40908125 AAGACACTATGGCAACACGA
64 AAGACGCTATGGCATCACGA
40908145 CGGAAAATGA
Statistics
Matches: 150, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
89 3 0.02
90 146 0.97
91 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (90 bp):
GAGTAAGACCATGAATGAAAGACGCTATGACATCAAGAATCAAACAAATAAGACCATAGCTGAAA
GACGCTATGGCATCACGATTCTATC
Found at i:40908126 original size:135 final size:135
Alignment explanation
Indices: 40907882--40908129 Score: 331
Period size: 135 Copynumber: 1.8 Consensus size: 135
40907872 TACCAGAAAT
*
40907882 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
1 GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
* * * * * * * *
40907947 GGCGTTATGGCATCACGATTCTATCGAGTAAGACCATGAATGAAAGACGTTATGACATCATGATT
66 GACGCTATGGCATCAAGAATCAAACAAATAAGACCATGAATGAAAGACGTTATGACATCATGATT
40908012 CTATC
131 CTATC
* *
40908017 GAGTAAGACCAT-AGCTGAAAGACGCTATGGCATCATGATTCTATCGAGTAAGACCAT-AGTTGA
1 GAGTAAGACCATGA-CTGAAAGACGCTATGGCATCACGATTCTATCGAGTAAGACCATGA-CTGA
**
40908080 AAGACGCTATGGCATCAAGAATCAAACAAAT-AGAACCATGGTTGAAAGAC
64 AAGACGCTATGGCATCAAGAATCAAACAAATAAG-ACCATGAATGAAAGAC
40908130 ACTATGGCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
134 4 0.04
135 93 0.96
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (135 bp):
GAGTAAGACCATGACTGAAAGACGCTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
GACGCTATGGCATCAAGAATCAAACAAATAAGACCATGAATGAAAGACGTTATGACATCATGATT
CTATC
Found at i:40916268 original size:72 final size:71
Alignment explanation
Indices: 40916158--40916290 Score: 212
Period size: 72 Copynumber: 1.9 Consensus size: 71
40916148 TTTAGCCTAT
* * *
40916158 GGGCTTTTCACTATATGTATCTGGCATGTTATCAGTTGGAATAGCTCTTATGAGCAATCCTATTT
1 GGGCTTTGCACTATATGCATATGGCATGTTATCAGTTGGAATAGCTCTTATGAGCAA-CCTATTT
40916223 AGCATGC
65 AGCATGC
* *
40916230 GGGCTTTGCACTATGTGCATATGGCATGTTATCGGTTGGAATAGCTCTTATGAGCAACCTA
1 GGGCTTTGCACTATATGCATATGGCATGTTATCAGTTGGAATAGCTCTTATGAGCAACCTA
40916291 GCATGTTTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
71 4 0.07
72 52 0.93
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (71 bp):
GGGCTTTGCACTATATGCATATGGCATGTTATCAGTTGGAATAGCTCTTATGAGCAACCTATTTA
GCATGC
Found at i:40918341 original size:27 final size:28
Alignment explanation
Indices: 40918308--40918360 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
40918298 AAATGAAATA
40918308 AATAATAA-AATAAATAAC-AACAATGAT
1 AATAATAACAA-AAATAACAAACAATGAT
*
40918335 AATAATAACAAAAATGACAAACAATG
1 AATAATAACAAAAATAACAAACAATG
40918361 CGCATGAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (28 bp):
AATAATAACAAAAATAACAAACAATGAT
Found at i:40918344 original size:15 final size:13
Alignment explanation
Indices: 40918304--40918349 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
40918294 GAAAAAATGA
40918304 AATAAATAATAA-
1 AATAAATAATAAC
*
40918316 AATAAATAACAAC
1 AATAAATAATAAC
40918329 AATGATAATAATAAC
1 AAT-A-AATAATAAC
40918344 AA-AAAT
1 AATAAAT
40918350 GACAAACAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 14 0.48
13 4 0.14
14 1 0.03
15 10 0.34
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.22
Consensus pattern (13 bp):
AATAAATAATAAC
Found at i:40918574 original size:10 final size:9
Alignment explanation
Indices: 40918555--40918615 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
40918545 TAAATGACCG
40918555 AAATAAAAA
1 AAATAAAAA
40918564 AAAT-AAAA
1 AAATAAAAA
**
40918572 AAA-AACCA
1 AAATAAAAA
40918580 AAATAAAAA
1 AAATAAAAA
*
40918589 AAATATAAAG
1 AAATA-AAAA
40918599 AAATAAAGAA
1 AAATAAA-AA
40918609 ATAATAA
1 A-AATAA
40918616 CAGCAACTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
8 12 0.29
9 14 0.34
10 10 0.24
11 5 0.12
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.13
Consensus pattern (9 bp):
AAATAAAAA
Found at i:40920024 original size:17 final size:17
Alignment explanation
Indices: 40920004--40920040 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
40919994 TTTGGACCTT
*
40920004 TTTATTTATTTTTTGGA
1 TTTATTTATTGTTTGGA
*
40920021 TTTATTTATTGTTTGTA
1 TTTATTTATTGTTTGGA
40920038 TTT
1 TTT
40920041 GGTCTTGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (17 bp):
TTTATTTATTGTTTGGA
Found at i:40920266 original size:44 final size:44
Alignment explanation
Indices: 40920149--40920651 Score: 232
Period size: 44 Copynumber: 11.2 Consensus size: 44
40920139 TGCCTGGTCT
* * * * * *
40920149 GAGATGAGATTTGTAGCTTCAACCCGCTCCACTGCAACTATAAGG
1 GAGATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACT-TCAGG
** * * * *
40920194 GA-ATAAGATTCACCATCTTCATTCTGCTCTACTGCAACTTCAGG
1 GAGATAAGATT-AGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * * *
40920238 GAGATAAGATTAGTGGCTTTAATCTGCTCTACTACAACTTTAGA
1 GAGATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * ** *
40920282 GAGATAAGATTTACTATCTTCAGCCTGCTCCACTGCAACTTTAGG
1 GAGATAAGA-TTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * * * *
40920327 GAGATAAGGTT--T-GATATGATCTGCTCTACTGCAACTTCAGA
1 GAGATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* *
40920368 GAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTGCAACTTCAGG
1 GAGATAAGA--T-T-A---GTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * * *
40920419 GAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGG
1 GAGATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * *
40920463 GAGATAATG-TCT-G-A-C-ATGATCTGCTCTACTGCAACTTCAGA
1 GAGATAA-GAT-TAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * ** * **
40920504 GATATAAGATCTGTAATTTATAGCTTCAATCTATTCCACTACAACTTCAAC
1 GAGATAAGA--T-T-A---GTAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * * * *
40920555 GAAATAAGATTTGTTATCTTCAGTCTGCTCCACTACAACTTCAGG
1 GAGATAAGATTAG-TAGCTTTAATCTGCTCCACTGCAACTTCAGG
* * * * *
40920600 GAGATAAGACTAGTAACTTCAACCTGCTCCATTGCAACTTCAGG
1 GAGATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
40920644 GAGATAAG
1 GAGATAAG
40920652 GTTTGATATG
Statistics
Matches: 341, Mismatches: 90, Indels: 55
0.70 0.19 0.11
Matches are distributed among these distances:
40 1 0.00
41 52 0.15
42 2 0.01
43 4 0.01
44 117 0.34
45 101 0.30
47 1 0.00
48 2 0.01
49 2 0.01
50 2 0.01
51 57 0.17
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (44 bp):
GAGATAAGATTAGTAGCTTTAATCTGCTCCACTGCAACTTCAGG
Found at i:40920301 original size:89 final size:88
Alignment explanation
Indices: 40920196--40920432 Score: 244
Period size: 89 Copynumber: 2.6 Consensus size: 88
40920186 CTATAAGGGA
* * * * * *
40920196 ATAAGATTCACCATCTTCATTCTGCTCTACTGCAACTTCAGGGAGATAAGATTAGTGGCTTTAAT
1 ATAAGATTTACTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGT-GATATAAT
*
40920261 CTGCTCTACTACAACTTTAGAGAG
65 CTGCTCTACTACAACTTCAGAGAG
** * * *
40920285 ATAAGATTTACTATCTTCAGCCTGCTCCACTGCAACTTTAGGGAGATAAGGTT--TGATATGATC
1 ATAAGATTTACTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGATATAATC
*
40920348 TGCTCTACTGCAACTTCAGAGAG
66 TGCTCTACTACAACTTCAGAGAG
* * * *
40920371 ATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGACTAGT
1 ATAAGAT-T-T-A-CTAT--CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGT
40920433 AACTTCAACC
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
86 34 0.28
87 2 0.02
88 1 0.01
89 47 0.39
90 3 0.03
92 32 0.27
94 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (88 bp):
ATAAGATTTACTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTGATATAATC
TGCTCTACTACAACTTCAGAGAG
Found at i:40920321 original size:45 final size:45
Alignment explanation
Indices: 40920165--40920651 Score: 158
Period size: 45 Copynumber: 10.8 Consensus size: 45
40920155 AGATTTGTAG
* * * * *
40920165 CTTCAACCCGCTCCACTGCAACTATA-AGGGAATAAGATTCACCAT
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAG-ATAAGATTTACTAT
** * * * * **
40920210 CTTCATTCTGCTCTACTGCAACTTCAGGGAGATAAGA-TTAGTGG
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTTACTAT
* * * *
40920254 CTTTAATCTGCTCTACTACAACTTTAGAGAGATAAGATTTACTAT
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTTACTAT
* * *
40920299 CTTCAGCCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTGA-TA-
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTT-ACTAT
* * * * *
40920343 --T-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAT
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGAT-T-T-A-CTAT
* * * * * * * *
40920389 AGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGA-CTAGTAA
1 --CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTTACTAT
* * * *
40920435 CTTCAACCTACTCCACTGCAACTTCAGGGAGAT-A-ATGT-CTGA-
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTTACT-AT
* * * * * * *
40920477 CAT-GATCTGCTCTACTGCAACTTCAGAGATATAAGATCTGTAATTTAT
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGAT-T-T-A-CTAT
* ** * * * **
40920525 AGCTTCAATCTATTCCACTACAACTTCA-ACGAAATAAGATTTGTTAT
1 --CTTCAACCTGCTCCACTGCAACTTTAGA-GAGATAAGATTTACTAT
** * * * * * *
40920572 CTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGA-CTAGTAA
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTTACTAT
* * *
40920616 CTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAG
1 CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAG
40920652 GTTTGATATG
Statistics
Matches: 335, Mismatches: 79, Indels: 57
0.71 0.17 0.12
Matches are distributed among these distances:
41 50 0.15
42 7 0.02
43 7 0.02
44 98 0.29
45 99 0.30
46 5 0.01
47 6 0.02
48 2 0.01
49 1 0.00
50 5 0.01
51 55 0.16
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (45 bp):
CTTCAACCTGCTCCACTGCAACTTTAGAGAGATAAGATTTACTAT
Found at i:40920482 original size:136 final size:136
Alignment explanation
Indices: 40920253--40920607 Score: 487
Period size: 136 Copynumber: 2.6 Consensus size: 136
40920243 AAGATTAGTG
* * * *
40920253 GCTTTAATCTGCTCTACTACAACTTTAGAGAGATAAGATTTACTATCTTCAGCCTGCTCCACTGC
1 GCTTTAATCTGTTCCACTACAACTTCAGAGAGATAAGA-TTAGTATCTTCAGCCTGCTCCACTGC
* * *
40920318 AACTTTAGGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTA
65 AACTTCAGGGAGATAAGGTCTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTA
40920383 ATTTATA
130 ATTTATA
* * * * * *
40920390 GCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCA
1 GCTTTAATCTGTTCCACTACAACTTCAGAGAGATAAGATTAGTATCTTCAGCCTGCTCCACTGCA
* *
40920455 ACTTCAGGGAGATAATGTCTGACATGATCTGCTCTACTGCAACTTCAGAGATATAAGATCTGTAA
66 ACTTCAGGGAGATAAGGTCTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA
40920520 TTTATA
131 TTTATA
* * * * * *
40920526 GCTTCAATCTATTCCACTACAACTTCA-ACGAAATAAGATTTGTTATCTTCAGTCTGCTCCACTA
1 GCTTTAATCTGTTCCACTACAACTTCAGA-GAGATAAGATTAG-TATCTTCAGCCTGCTCCACTG
40920590 CAACTTCAGGGAGATAAG
64 CAACTTCAGGGAGATAAG
40920608 ACTAGTAACT
Statistics
Matches: 188, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
136 122 0.65
137 66 0.35
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (136 bp):
GCTTTAATCTGTTCCACTACAACTTCAGAGAGATAAGATTAGTATCTTCAGCCTGCTCCACTGCA
ACTTCAGGGAGATAAGGTCTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA
TTTATA
Found at i:40920552 original size:92 final size:91
Alignment explanation
Indices: 40920435--40920743 Score: 290
Period size: 92 Copynumber: 3.4 Consensus size: 91
40920425 AGACTAGTAA
* * *
40920435 CTTCAACCTACTCCACTGCAACTTCAGGGAGATAATGTCTGACATGATCTGCTCTACTGCAACTT
1 CTTCAACCTACTCCACTGCAACTTCAGGGAAATAA-GTTTGACATGATCTGCTCTACTACAACTT
*
40920500 CAGAGATATAAGATCTGTAATTTATAG
65 CAGAGAGATAAGATCTGTAATTTATAG
* * * ** * * *
40920527 CTTCAATCTATTCCACTACAACTTCAACGAAATAAGATTTGTTATCTTCAGTCTGCTCCACTACA
1 CTTCAACCTACTCCACTGCAACTTCAGGGAAATAAG-TTTG--A-CATGA-TCTGCTCTACTACA
* *
40920592 ACTTCAGGGAGATAAGA-C--T-A-GTA-A-
61 ACTTCAGAGAGATAAGATCTGTAATTTATAG
* * * * * *
40920616 CTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGGTTTGATATGATATACTCTACTACAACTT
1 CTTCAACCTACTCCACTGCAACTTCAGGGAAATAA-GTTTGACATGATCTGCTCTACTACAACTT
*
40920681 CAGAGAGATAAGATCTGCAATTTATAG
65 CAGAGAGATAAGATCTGTAATTTATAG
* * *
40920708 CTTCAATCTATTCCACTGCAACTTTAGGGAAATAAG
1 CTTCAACCTACTCCACTGCAACTTCAGGGAAATAAG
40920744 ATTCGCTATC
Statistics
Matches: 167, Mismatches: 37, Indels: 27
0.72 0.16 0.12
Matches are distributed among these distances:
85 27 0.16
86 3 0.02
87 1 0.01
89 32 0.19
90 4 0.02
91 5 0.03
92 62 0.37
93 1 0.01
94 1 0.01
95 4 0.02
96 27 0.16
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.30
Consensus pattern (91 bp):
CTTCAACCTACTCCACTGCAACTTCAGGGAAATAAGTTTGACATGATCTGCTCTACTACAACTTC
AGAGAGATAAGATCTGTAATTTATAG
Found at i:40920596 original size:181 final size:181
Alignment explanation
Indices: 40920393--40920802 Score: 597
Period size: 181 Copynumber: 2.3 Consensus size: 181
40920383 ATTTATAGCT
* *
40920393 TTAA-TCTGTTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
1 TTAAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
* * * * * *
40920457 TTCAGGGAGATAATGTCTGACATGATCTGCTCTACTGCAACTTCAGAGATATAAGATCTGTAATT
66 TTCAGGGAGATAAGGTCTGACATGATATACTCTACTACAACTTCAGAGAGATAAGATCTGCAATT
* *
40920522 TATAGCTTCAATCTATTCCACTACAACTTCAACGAAATAAGATTTGTTATC
131 TATAGCTTCAATCTATTCCACTACAACTTCAACGAAATAAGATTCGCTATC
* * *
40920573 TTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCATTGCAAC
1 TTAAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
* *
40920638 TTCAGGGAGATAAGGTTTGATATGATATACTCTACTACAACTTCAGAGAGATAAGATCTGCAATT
66 TTCAGGGAGATAAGGTCTGACATGATATACTCTACTACAACTTCAGAGAGATAAGATCTGCAATT
* * **
40920703 TATAGCTTCAATCTATTCCACTGCAACTTTAGGGAAATAAGATTCGCTATC
131 TATAGCTTCAATCTATTCCACTACAACTTCAACGAAATAAGATTCGCTATC
* * * * *
40920754 TTAAGTCTACTCTACTTCAACATCAGGGAGATGAGACTAGTAACTTCAA
1 TTAAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGTAACTTCAA
40920803 AGAGATAAGG
Statistics
Matches: 204, Mismatches: 25, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
180 3 0.01
181 201 0.99
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (181 bp):
TTAAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAAC
TTCAGGGAGATAAGGTCTGACATGATATACTCTACTACAACTTCAGAGAGATAAGATCTGCAATT
TATAGCTTCAATCTATTCCACTACAACTTCAACGAAATAAGATTCGCTATC
Found at i:40920690 original size:85 final size:84
Alignment explanation
Indices: 40920409--40920693 Score: 255
Period size: 85 Copynumber: 3.2 Consensus size: 84
40920399 TGTTCCACTG
* * *
40920409 CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAATGTC
1 CAACTTCAGAGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTT
* * *
40920474 TGACATGATCTGCTCTACTG
66 TGATATGATAT-CTCTACTA
* * * * * ** *
40920494 CAACTTCAGAGATATAAGATCTGTAATTTATAGCTTCAATCTATTCCACTACAACTTCAACGAAA
1 CAACTTCAGAGAGATAAGA-C--T-A-GTA-A-CTTCAACCTACTCCACTGCAACTTCAGGGAGA
* * **
40920559 TAAGATTTGTTATCTTCAGTCTGCTCCACTA
59 TAAGGTTTGATATGAT-A-TCT-CT--ACTA
* * *
40920590 CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGGTT
1 CAACTTCAGAGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTT
40920655 TGATATGATATACTCTACTA
66 TGATATGATAT-CTCTACTA
40920675 CAACTTCAGAGAGATAAGA
1 CAACTTCAGAGAGATAAGA
40920694 TCTGCAATTT
Statistics
Matches: 153, Mismatches: 34, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
85 39 0.25
86 1 0.01
87 3 0.02
88 4 0.03
89 37 0.24
90 3 0.02
91 3 0.02
92 36 0.24
93 3 0.02
94 3 0.02
95 1 0.01
96 20 0.13
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (84 bp):
CAACTTCAGAGAGATAAGACTAGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTT
TGATATGATATCTCTACTA
Found at i:40921765 original size:17 final size:15
Alignment explanation
Indices: 40921739--40921789 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
40921729 TGGCCTATCC
*
40921739 TTTTTCTTTTTCTTCT
1 TTTTTTTTTTTCTT-T
40921755 TTTTTTGTTTTTCTTT
1 TTTTTT-TTTTTCTTT
*
40921771 TCTTTTTTTTTCATTT
1 TTTTTTTTTTTC-TTT
40921787 TTT
1 TTT
40921790 AAAAAAAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 6 0.20
16 16 0.53
17 8 0.27
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.84
Consensus pattern (15 bp):
TTTTTTTTTTTCTTT
Found at i:40921787 original size:22 final size:23
Alignment explanation
Indices: 40921739--40921788 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
40921729 TGGCCTATCC
*
40921739 TTTTTCTTTTTCTTCTTTTTTTG
1 TTTTTCTTTTTCTTCTTTTTTTA
40921762 TTTTTC-TTTTCTT-TTTTTTTCA
1 TTTTTCTTTTTCTTCTTTTTTT-A
40921784 TTTTT
1 TTTTT
40921789 TAAAAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 7 0.28
22 12 0.48
23 6 0.24
ACGTcount: A:0.02, C:0.12, G:0.02, T:0.84
Consensus pattern (23 bp):
TTTTTCTTTTTCTTCTTTTTTTA
Found at i:40921789 original size:23 final size:23
Alignment explanation
Indices: 40921739--40921781 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
40921729 TGGCCTATCC
40921739 TTTTTCTTTTTCTTCTTTTTTTG
1 TTTTTCTTTTTCTTCTTTTTTTG
40921762 TTTTTC-TTTTCTT-TTTTTTT
1 TTTTTCTTTTTCTTCTTTTTTT
40921782 CATTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.35
22 7 0.35
23 6 0.30
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (23 bp):
TTTTTCTTTTTCTTCTTTTTTTG
Found at i:40921901 original size:14 final size:15
Alignment explanation
Indices: 40921878--40921910 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
40921868 ATCGACACTT
40921878 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
40921892 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
40921907 TTCC
1 TTCC
40921911 CAGTTTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:40924792 original size:43 final size:43
Alignment explanation
Indices: 40924693--40924792 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
40924683 TGTTATCATA
* *
40924693 TAAGACCACGTCTGGGACGTTGGCATCAACTTGTGTTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCAACTTGTGATTACATG
* * *
40924736 TAAGACTC-TGTCTGGGACCG-TGGCATC-ATTCTGTGATTACATT
1 TAAGAC-CACGTCTGGGA-CGTTGGCATCAACT-TGTGATTACATG
40924779 TAAGACCACGTCTG
1 TAAGACCACGTCTG
40924793 AGAGGTTAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.06
43 41 0.87
44 3 0.06
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCAACTTGTGATTACATG
Found at i:40925801 original size:23 final size:23
Alignment explanation
Indices: 40925775--40926045 Score: 310
Period size: 23 Copynumber: 11.7 Consensus size: 23
40925765 ATTGGGTATA
* *
40925775 TATATATGCTATCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
40925798 TATAAATGCTGTCTAATTTAGTG
1 TATAAATGCTGTCCAATTTGGTG
*
40925821 TATATATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* * *
40925844 TATAAATGCTGTCTAATTTAGCG
1 TATAAATGCTGTCCAATTTGGTG
* *
40925867 TATATATGCTATCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
40925890 TAGAAATCCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
*
40925913 TAGAAATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
40925936 TAGAAATGTTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
40925959 TATATATGCTGTCCAATTTGGTA
1 TATAAATGCTGTCCAATTTGGTG
* *
40925982 TATATATATGTTGTCCAATTGGGTG
1 TATA-A-ATGCTGTCCAATTTGGTG
** *
40926007 TATAAATGCTGTCTGATTTGATG
1 TATAAATGCTGTCCAATTTGGTG
40926030 TATAAGA-GCTGTCCAA
1 TATAA-ATGCTGTCCAA
40926046 ATAGGGTAGA
Statistics
Matches: 208, Mismatches: 37, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
23 187 0.90
24 2 0.01
25 19 0.09
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (23 bp):
TATAAATGCTGTCCAATTTGGTG
Found at i:40934354 original size:3 final size:3
Alignment explanation
Indices: 40934348--40934380 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
40934338 CAACAACAAC
*
40934348 AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
40934381 GACAAACAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:40934551 original size:3 final size:3
Alignment explanation
Indices: 40934543--40934593 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
40934533 GTACATAAAT
* *
40934543 ATA ATA ATA ATA ATAA ATA ATA A-A ATG A-A ATA ATA ATA AAA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
40934587 AAA ATA A
1 ATA ATA A
40934594 ACCAAAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 3 0.08
3 33 0.85
4 3 0.08
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (3 bp):
ATA
Found at i:40934578 original size:23 final size:22
Alignment explanation
Indices: 40934540--40934632 Score: 86
Period size: 23 Copynumber: 4.2 Consensus size: 22
40934530 AGAGTACATA
*
40934540 AATATAAT-AATAATAATAAAT
1 AATAAAATAAATAATAATAAAT
40934561 AATAAAATGAAATAATAATAAA-
1 AATAAAAT-AAATAATAATAAAT
*
40934583 AATAAAAATAAACCAA-AATAAAT
1 AAT-AAAATAAA-TAATAATAAAT
*
40934606 AATATAAACAAA-AATAAATAAAT
1 AATA-AAATAAATAAT-AATAAAT
40934629 AATA
1 AATA
40934633 CCAGCAACTA
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
21 9 0.15
22 13 0.21
23 39 0.64
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (22 bp):
AATAAAATAAATAATAATAAAT
Found at i:40934586 original size:29 final size:27
Alignment explanation
Indices: 40934543--40934632 Score: 94
Period size: 29 Copynumber: 3.2 Consensus size: 27
40934533 GTACATAAAT
*
40934543 ATAATAATAATAATAAATAATAAAATGAA
1 ATAATAATAAAAATAAA-AATAAAAT-AA
40934572 ATAATAATAAAAATAAAAATAAACCA-AA
1 ATAATAATAAAAATAAAAATAAA--ATAA
* *
40934600 ATAAATAATATAAACAAAAAT-AAATAA
1 AT-AATAATAAAAATAAAAATAAAATAA
40934627 ATAATA
1 ATAATA
40934633 CCAGCAACTA
Statistics
Matches: 54, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
26 5 0.09
27 4 0.07
28 12 0.22
29 32 0.59
30 1 0.02
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.23
Consensus pattern (27 bp):
ATAATAATAAAAATAAAAATAAAATAA
Found at i:40934614 original size:19 final size:18
Alignment explanation
Indices: 40934588--40934635 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
40934578 ATAAAAATAA
40934588 AAATAAACCAAAATAAAT
1 AAATAAACCAAAATAAAT
*
40934606 AATATAAACAAAAATAAAT
1 AA-ATAAACCAAAATAAAT
40934625 AAATAATACCA
1 AAATAA-ACCA
40934636 GCAACTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (18 bp):
AAATAAACCAAAATAAAT
Found at i:40935340 original size:19 final size:19
Alignment explanation
Indices: 40935316--40935352 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
40935306 GGATTGAAAT
40935316 ACTGCTAAATGGAGTTTGA
1 ACTGCTAAATGGAGTTTGA
40935335 ACTGCTAAATGGAGTTTG
1 ACTGCTAAATGGAGTTTG
40935353 GCGATAGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (19 bp):
ACTGCTAAATGGAGTTTGA
Found at i:40938246 original size:11 final size:11
Alignment explanation
Indices: 40938232--40938283 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 11
40938222 AATAACCTCA
40938232 AAATTAAAAAT
1 AAATTAAAAAT
40938243 AAATTAAAAAT
1 AAATTAAAAAT
*
40938254 AACAGTAAATAAAT
1 AA-A-TTAA-AAAT
40938268 AAAAATTAAAAAT
1 --AAATTAAAAAT
40938281 AAA
1 AAA
40938284 AGAAATGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
11 16 0.47
12 1 0.03
13 7 0.21
14 7 0.21
15 1 0.03
16 2 0.06
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (11 bp):
AAATTAAAAAT
Found at i:40939786 original size:23 final size:23
Alignment explanation
Indices: 40939756--40939800 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
40939746 TTAAAACTAA
40939756 ACTACTAAATA-CTGAAAATGTAG
1 ACTACTAAATATC-GAAAATGTAG
40939779 ACTACTAAATATCGAAAATGTA
1 ACTACTAAATATCGAAAATGTA
40939801 ATAATTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (23 bp):
ACTACTAAATATCGAAAATGTAG
Found at i:40941789 original size:24 final size:24
Alignment explanation
Indices: 40941759--40941814 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
40941749 AAGTTCAAGC
40941759 GAGCCATAACGGGTAGCTCATAAA
1 GAGCCATAACGGGTAGCTCATAAA
*
40941783 GAGCCATAACGGGTAGCTCATGAA
1 GAGCCATAACGGGTAGCTCATAAA
40941807 GAGCCATA
1 GAGCCATA
40941815 TATCGGGACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.16
Consensus pattern (24 bp):
GAGCCATAACGGGTAGCTCATAAA
Found at i:40941828 original size:26 final size:24
Alignment explanation
Indices: 40941759--40941836 Score: 86
Period size: 24 Copynumber: 3.2 Consensus size: 24
40941749 AAGTTCAAGC
*
40941759 GAGCCATAACGGGTAGCTCATAAA
1 GAGCCATAACGGGTAACTCATAAA
* *
40941783 GAGCCATAACGGGTAGCTCATGAA
1 GAGCCATAACGGGTAACTCATAAA
*
40941807 GAGCCATATATCGGG-ACACTCATACA
1 GAGCCATA-A-CGGGTA-ACTCATAAA
40941833 GAGC
1 GAGC
40941837 TGCAGTATGT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
24 31 0.66
25 2 0.04
26 14 0.30
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.17
Consensus pattern (24 bp):
GAGCCATAACGGGTAACTCATAAA
Found at i:40950860 original size:20 final size:20
Alignment explanation
Indices: 40950835--40950877 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
40950825 AAAAGGAAAG
40950835 AAAGAAGAGAGATTGAGAGA
1 AAAGAAGAGAGATTGAGAGA
** *
40950855 AAAGAATCGAGATTGTGAGA
1 AAAGAAGAGAGATTGAGAGA
40950875 AAA
1 AAA
40950878 ACAAGAGCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.30, T:0.14
Consensus pattern (20 bp):
AAAGAAGAGAGATTGAGAGA
Found at i:40961402 original size:20 final size:22
Alignment explanation
Indices: 40961354--40961402 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
40961344 ATTATTTAAG
40961354 TGTT-TTTAATTTGTCCTAGCA
1 TGTTATTTAATTTGTCCTAGCA
* *
40961375 TATTATTTAATTTGT-TTA-CA
1 TGTTATTTAATTTGTCCTAGCA
40961395 TGTTATTT
1 TGTTATTT
40961403 TGTCCAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 9 0.38
21 5 0.21
22 10 0.42
ACGTcount: A:0.22, C:0.08, G:0.10, T:0.59
Consensus pattern (22 bp):
TGTTATTTAATTTGTCCTAGCA
Found at i:40969943 original size:20 final size:20
Alignment explanation
Indices: 40969914--40969971 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
40969904 ATAAACTATA
*
40969914 TACCACTCCATTTACTT-TCT
1 TACCATTCCATTTACTTAT-T
40969934 TACCATTCCATTTACTTATT
1 TACCATTCCATTTACTTATT
* *
40969954 TTCCATTTCATTTACTTA
1 TACCATTCCATTTACTTA
40969972 ACATAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 33 0.97
21 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (20 bp):
TACCATTCCATTTACTTATT
Found at i:40978346 original size:24 final size:23
Alignment explanation
Indices: 40978319--40978375 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
40978309 CATTTAGTAA
*
40978319 AATAAAAGTTGTTTTTA-ATATTTT
1 AATAAAA-TTATTTTTATAT-TTTT
40978343 AATAGTAAATTATTTTTATATTTTT
1 AATA--AAATTATTTTTATATTTTT
40978368 AATAAAAT
1 AATAAAAT
40978376 AAAATTTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 16 0.55
26 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (23 bp):
AATAAAATTATTTTTATATTTTT
Found at i:40981329 original size:124 final size:124
Alignment explanation
Indices: 40981104--40981331 Score: 395
Period size: 124 Copynumber: 1.8 Consensus size: 124
40981094 GAAAAAGAGC
* **
40981104 GTCCACGCGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTTTTTGAAGCGTTTTTTGAC
1 GTCCACGCGGGAGCTTTTTTCATCAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTTGAC
*
40981169 ACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAGAACTACTATAAAAAAAA
66 ACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCAAGAACTACTATAAAAAAAA
* *
40981228 GTCCACGTGGGAGCTTTTTTCATCAATTTTGCTAACAGTGCATCCTGCTTGAAGTG-TTTTTGAC
1 GTCCACGCGGGAGCTTTTTTCATCAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTTGAC
40981292 ACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCA
66 ACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCA
40981332 GGTGGGAGCT
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
123 47 0.48
124 51 0.52
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (124 bp):
GTCCACGCGGGAGCTTTTTTCATCAATTTTGCTAACAGTGCATCCTGCTTGAAGCGTTTTTTGAC
ACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCAAGAACTACTATAAAAAAAA
Found at i:40981590 original size:33 final size:32
Alignment explanation
Indices: 40981508--40981600 Score: 91
Period size: 33 Copynumber: 2.9 Consensus size: 32
40981498 ACACAATATT
* *
40981508 ATTTTAAAAAA-A-TAAACCATAGTTTAATTA
1 ATTTTAAAAAACACTAAACCCTAATTTAATTA
* *
40981538 ATTTTCTTAAAAACTCTAAACCCTAATTTAATTA
1 A-TTT-TAAAAAACACTAAACCCTAATTTAATTA
* *
40981572 ATTTTAAAAAAACACTAAATCCTGATTTA
1 ATTTT-AAAAAACACTAAACCCTAATTTA
40981601 TTTTTTAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
30 1 0.02
31 3 0.06
32 7 0.14
33 22 0.44
34 17 0.34
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (32 bp):
ATTTTAAAAAACACTAAACCCTAATTTAATTA
Found at i:40981682 original size:41 final size:42
Alignment explanation
Indices: 40981616--40981709 Score: 118
Period size: 41 Copynumber: 2.2 Consensus size: 42
40981606 TAAATTTCTT
* * * *
40981616 AAAACCCTAAACCTTAAGTTATTTTAACAAAACCCTACCCCT-
1 AAAACCCT-AACCCTAAATTATTTTAACAAAACACTAACCCTA
* *
40981658 ACAACCCTAACCCTAAATTATTTTAATAAAACACTAACCCTA
1 AAAACCCTAACCCTAAATTATTTTAACAAAACACTAACCCTA
40981700 AAAACCCTAA
1 AAAACCCTAA
40981710 ACCAAAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 28 0.64
42 16 0.36
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (42 bp):
AAAACCCTAACCCTAAATTATTTTAACAAAACACTAACCCTA
Found at i:40982188 original size:86 final size:85
Alignment explanation
Indices: 40982043--40982212 Score: 322
Period size: 86 Copynumber: 2.0 Consensus size: 85
40982033 AACCACTATA
40982043 CTTATAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAA
1 CTTATAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATT-AAAA
40982108 AAATAAGATGTCCTAGAGCTC
65 AAATAAGATGTCCTAGAGCTC
*
40982129 CTTATAGTATGAAACATTTAGAAGTTATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAA
1 CTTATAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAA
40982194 AATAAGATGTCCTAGAGCT
66 AATAAGATGTCCTAGAGCT
40982213 GCTTTAATGG
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
85 24 0.29
86 59 0.71
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (85 bp):
CTTATAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAA
AATAAGATGTCCTAGAGCTC
Found at i:40982518 original size:86 final size:86
Alignment explanation
Indices: 40982373--40982539 Score: 316
Period size: 86 Copynumber: 1.9 Consensus size: 86
40982363 ACTATACTTA
*
40982373 TAGTATGAAACATTTAGAAGATATACACATTAAATTTGTTACTTTTTAAATTTATTAAAAAAAAT
1 TAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAAAAAT
40982438 AAGATGTCCTAGAGCTCCTTG
66 AAGATGTCCTAGAGCTCCTTG
*
40982459 TAGTATGAAACATTTAGAAGTTATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAAAAAT
1 TAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAAAAAT
40982524 AAGATGTCCTAGAGCT
66 AAGATGTCCTAGAGCT
40982540 GCTTCAATGG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (86 bp):
TAGTATGAAACATTTAGAAGATATACACATTAAATTTGCTACTTTTTAAATTTATTAAAAAAAAT
AAGATGTCCTAGAGCTCCTTG
Found at i:40985852 original size:6 final size:6
Alignment explanation
Indices: 40985843--40985892 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
40985833 TTCGTTACCC
* * *
40985843 TTCTTT TTCTTT TTCTTC TTCTTCG TTCTTT TTC-TT TTCTTT TTATTT
1 TTCTTT TTCTTT TTCTTT TTCTT-T TTCTTT TTCTTT TTCTTT TTCTTT
40985891 TT
1 TT
40985893 GCTGATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 5 0.13
6 28 0.74
7 5 0.13
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (6 bp):
TTCTTT
Found at i:40985878 original size:31 final size:30
Alignment explanation
Indices: 40985817--40985886 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
40985807 TTTTCTTTAG
*
40985817 TTTTC-TTCTCTTCTTCTTCGTTACCCTTC
1 TTTTCTTTTTCTTCTTCTTCGTTACCCTTC
**
40985846 TTTTTCTTTTTCTTCTTCTTCGTT-CTTTTTC
1 -TTTTCTTTTTCTTCTTCTTCGTTAC-CCTTC
40985877 TTTTCTTTTT
1 TTTTCTTTTT
40985887 ATTTTTGCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 16 0.46
31 19 0.54
ACGTcount: A:0.01, C:0.26, G:0.03, T:0.70
Consensus pattern (30 bp):
TTTTCTTTTTCTTCTTCTTCGTTACCCTTC
Found at i:41000256 original size:50 final size:50
Alignment explanation
Indices: 41000179--41000411 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
41000169 TGTCATATCT
* ** * * *
41000179 CAGATATGGTCTTACATGGGAGTTCTCATATCGATACGC-ATGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCGATGC-CAACGCCATGTCC
* ** * *
41000229 CAGACAAGGTCTTACGGGGGACCTCTCATCTCCATGCCAACGCCATGCCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTCC
* * * * *
41000279 CAGACATGATCTTTCATAGGACCTCTCATCCCGGTGCCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTCC
* * *
41000329 CAGACATGGTCTTATATGGGACCTCTCATCTTGGTGCCAACGCCATGTCC
1 CAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTCC
41000379 CAGACATGGTCTTACATGGGACCTCTCATCTCG
1 CAGACATGGTCTTACATGGGACCTCTCATCTCG
41000412 TGTTGACATG
Statistics
Matches: 153, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 1 0.01
50 152 0.99
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (50 bp):
CAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTCC
Found at i:41000493 original size:44 final size:44
Alignment explanation
Indices: 41000429--41000524 Score: 174
Period size: 44 Copynumber: 2.2 Consensus size: 44
41000419 ATGGATCAAC
*
41000429 CATGGTACTTTTCCGTCAATTCTTTCTTAATTGCCATGTTATAAA
1 CATGG-ACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
41000474 CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
1 CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
41000518 CATGGAC
1 CATGGAC
41000525 CTTGAGATAT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 45 0.90
45 5 0.10
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (44 bp):
CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
Found at i:41004578 original size:12 final size:12
Alignment explanation
Indices: 41004561--41004587 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
41004551 CATTCACACT
41004561 TAACATTACTCA
1 TAACATTACTCA
41004573 TAACATTACTCA
1 TAACATTACTCA
41004585 TAA
1 TAA
41004588 AAAATTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (12 bp):
TAACATTACTCA
Found at i:41006797 original size:150 final size:150
Alignment explanation
Indices: 41006612--41006902 Score: 363
Period size: 150 Copynumber: 1.9 Consensus size: 150
41006602 ATTGCCAATG
* * ** *
41006612 CCATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATTGATACCCAA-GTCATGTCC-CAGAC
1 CCATATCCCAGACATGGTCTTACATGGGACCTCTCATATTGAT-CCCAATGCCATG-CCTCAGAC
*** * **
41006675 ATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGCCATGTCCC-AGACATGGTCTTACATGG
64 ATGGTCTTACACAGGACCTCTCATCTCGGTGCCAACGCCATG-CCCTAGACATGGTCTTACATAC
*
41006739 GTCCTCTCATCTCGGTGCCAACA
128 GACCTCTCATCTCGGTGCCAACA
* * * * *
41006762 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAATGCCATGCCTCAGGCAT
1 CCATATCCCAGACATGGTCTTACATGGGACCTCTCATATTGATCCCAATGCCATGCCTCAGACAT
* *
41006827 GGTCTTACACAGGACCTTTCATCTTGGTGCCAACGCCATGCCCTAGACATGGTCTTACATACGAC
66 GGTCTTACACAGGACCTCTCATCTCGGTGCCAACGCCATGCCCTAGACATGGTCTTACATACGAC
41006892 CTCTCATCTCG
131 CTCTCATCTCG
41006903 TGTTGACATG
Statistics
Matches: 119, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
149 9 0.08
150 110 0.92
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (150 bp):
CCATATCCCAGACATGGTCTTACATGGGACCTCTCATATTGATCCCAATGCCATGCCTCAGACAT
GGTCTTACACAGGACCTCTCATCTCGGTGCCAACGCCATGCCCTAGACATGGTCTTACATACGAC
CTCTCATCTCGGTGCCAACA
Found at i:41006899 original size:50 final size:50
Alignment explanation
Indices: 41006604--41006902 Score: 325
Period size: 50 Copynumber: 6.0 Consensus size: 50
41006594 TTTCCTGTAT
* * * * ** * * *
41006604 TGCCAATGCCATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATTGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * **
41006654 TACCCAA-GTCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 T-GCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
41006704 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGTCCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
41006754 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** * *
41006804 TGCCAATGCCATG-CCTCAGGCATGGTCTTACACAGGACCTTTCATCTTGG
1 TGCCAACGCCATGTCC-CAGACATGGTCTTACATGGGACCTCTCATCTCGG
**
41006854 TGCCAACGCCATG-CCCTAGACATGGTCTTACATACGACCTCTCATCTCG
1 TGCCAACGCCATGTCCC-AGACATGGTCTTACATGGGACCTCTCATCTCG
41006903 TGTTGACATG
Statistics
Matches: 214, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
49 7 0.03
50 203 0.95
51 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:41011290 original size:47 final size:47
Alignment explanation
Indices: 41011236--41011646 Score: 644
Period size: 47 Copynumber: 8.7 Consensus size: 47
41011226 TTAGGATTCT
* * *
41011236 ATGTGATGGATGTGAACA-TATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCG
41011283 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
*
41011330 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTGATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
*
41011377 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTGATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
*
41011424 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
41011471 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
* * *
41011518 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
* * * * *
41011565 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
* * * *
41011612 ACGTGATGGATCTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
41011647 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 345 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
Found at i:41016503 original size:4 final size:4
Alignment explanation
Indices: 41016494--41016524 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
41016484 AAACTTTAAC
*
41016494 TTTA TTTA TTTA TTTA TTTA TTTA TCTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
41016525 TAGTTAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:41019702 original size:25 final size:25
Alignment explanation
Indices: 41019674--41019723 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
41019664 CCACTACATA
41019674 GCACAACATGCAGAGTCATAAAACT
1 GCACAACATGCAGAGTCATAAAACT
41019699 GCACAACATGCAGAGTCATAAAACT
1 GCACAACATGCAGAGTCATAAAACT
41019724 TACCTTGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (25 bp):
GCACAACATGCAGAGTCATAAAACT
Found at i:41022035 original size:18 final size:18
Alignment explanation
Indices: 41022012--41022053 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
41022002 TCCTACTATC
41022012 ACATCATTGTCTATTGTG
1 ACATCATTGTCTATTGTG
41022030 ACATCATTGTCTATTGTG
1 ACATCATTGTCTATTGTG
41022048 ACATCA
1 ACATCA
41022054 GTCCTAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.40
Consensus pattern (18 bp):
ACATCATTGTCTATTGTG
Found at i:41024524 original size:26 final size:26
Alignment explanation
Indices: 41024492--41024555 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
41024482 CATAAAAGAA
*
41024492 TTCCTTTTATAATCTGCCACAAAGGCG
1 TTCCTTTTATAATATGCCAC-AAGGCG
* * *
41024519 TT-CTTTCCATATTATGCCACAAGGTG
1 TTCCTTT-TATAATATGCCACAAGGCG
41024545 TTCCTTTTATA
1 TTCCTTTTATA
41024556 TTGCAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.41
Consensus pattern (26 bp):
TTCCTTTTATAATATGCCACAAGGCG
Found at i:41024556 original size:26 final size:27
Alignment explanation
Indices: 41024492--41024557 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 27
41024482 CATAAAAGAA
* *
41024492 TTCCTTTTATAATCTGCCACAAAGGCG
1 TTCCTTTTATATTATGCCACAAAGGCG
* *
41024519 TT-CTTTCCATATTATGCCAC-AAGGTG
1 TTCCTTT-TATATTATGCCACAAAGGCG
41024545 TTCCTTTTATATT
1 TTCCTTTTATATT
41024558 GCAAAAAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (27 bp):
TTCCTTTTATATTATGCCACAAAGGCG
Found at i:41026472 original size:22 final size:22
Alignment explanation
Indices: 41026429--41026488 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
41026419 AAAGCTGCTA
*
41026429 GTAACCAGAATAGCTAAGAGCT
1 GTAAACAGAATAGCTAAGAGCT
*
41026451 GTAAACAGGATAGCTATA-AGCT
1 GTAAACAGAATAGCTA-AGAGCT
* * *
41026473 ATAAATAGAATGGCTA
1 GTAAACAGAATAGCTA
41026489 CAAGCCATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 30 0.97
23 1 0.03
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (22 bp):
GTAAACAGAATAGCTAAGAGCT
Found at i:41026545 original size:32 final size:31
Alignment explanation
Indices: 41026490--41026587 Score: 97
Period size: 32 Copynumber: 3.1 Consensus size: 31
41026480 GAATGGCTAC
* *
41026490 AAGCCATAAGTACAGTAATATGATTGGCACA
1 AAGCCATAAGTAAAGTAATATGATCGGCACA
* *
41026521 AAGCCATCAGTAGAAGTGATATGATCGGCACA
1 AAGCCATAAGTA-AAGTAATATGATCGGCACA
** * * *
41026553 CGGCCATTAGTAACGGTAATATGATCAGCACA
1 AAGCCATAAGTAA-AGTAATATGATCGGCACA
41026585 AAG
1 AAG
41026588 TCACTAGTAG
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
31 12 0.23
32 41 0.77
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.20
Consensus pattern (31 bp):
AAGCCATAAGTAAAGTAATATGATCGGCACA
Found at i:41026633 original size:26 final size:26
Alignment explanation
Indices: 41026599--41026652 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
41026589 CACTAGTAGC
*
41026599 ATCGCAGCAAAGA-TGCCAGTAACAGT
1 ATCGCAGCAAA-ACTACCAGTAACAGT
* *
41026625 ATCGTAGCAAAACTACCAGTAATAGT
1 ATCGCAGCAAAACTACCAGTAACAGT
41026651 AT
1 AT
41026653 AAGTGGCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (26 bp):
ATCGCAGCAAAACTACCAGTAACAGT
Found at i:41026805 original size:24 final size:24
Alignment explanation
Indices: 41026778--41026854 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
41026768 CCATGCTTAG
*
41026778 AATCAGTCATACAAATCACAGATA
1 AATCAGTCATACAAATCACAGACA
*
41026802 AATCAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* ** *
41026826 AATCAGCCATTTAAATCACAAACA
1 AATCAGTCATACAAATCACAGACA
41026850 AATCA
1 AATCA
41026855 TTATTTACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.49, C:0.25, G:0.06, T:0.19
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:41026866 original size:23 final size:23
Alignment explanation
Indices: 41026816--41026887 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 23
41026806 AGTCATACCA
* *
41026816 ATCACAGACAAATCAGCCATTTAA
1 ATCACAGACAAATCA-TCATTTAC
* *
41026840 ATCACAAACAAATCATTATTTAC
1 ATCACAGACAAATCATCATTTAC
*
41026863 ATCACGGACAAATCAATCATTTAC
1 ATCACAGACAAATC-ATCATTTAC
41026887 A
1 A
41026888 CTCGAGGGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 17 0.43
24 23 0.57
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.25
Consensus pattern (23 bp):
ATCACAGACAAATCATCATTTAC
Found at i:41026902 original size:27 final size:26
Alignment explanation
Indices: 41026872--41026924 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
41026862 CATCACGGAC
41026872 AAATCAATCATTTACACTCGAGGGGCA
1 AAAT-AATCATTTACACTCGAGGGGCA
* * *
41026899 AAATAGTCATTTACCCTCTAGGGGCA
1 AAATAATCATTTACACTCGAGGGGCA
41026925 TTACAATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
AAATAATCATTTACACTCGAGGGGCA
Found at i:41026934 original size:26 final size:26
Alignment explanation
Indices: 41026871--41026936 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
41026861 ACATCACGGA
*
41026871 CAAATCAATCATTTACACTCGAGGGG
1 CAAAACAATCATTTACACTCGAGGGG
* * * *
41026897 CAAAATAGTCATTTACCCTCTAGGGG
1 CAAAACAATCATTTACACTCGAGGGG
**
41026923 CATTACAATCATTT
1 CAAAACAATCATTT
41026937 TACAAATATT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
CAAAACAATCATTTACACTCGAGGGG
Found at i:41029819 original size:131 final size:130
Alignment explanation
Indices: 41029585--41029996 Score: 504
Period size: 131 Copynumber: 3.1 Consensus size: 130
41029575 TACTTTAACT
* * * * * * * *
41029585 ATCATGAAAAATTCTCTTTGAGATAGCTAATTTAACATCGCTACTCCAAACAGCTTGTTGATTTA
1 ATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGCTACTACAAACAGCTCGTTGATTTA
* *
41029650 ATATCGTAGTTGATATTATTAGGGTTCGTTGATTCAAGATCGCAACCTAAGTTCATTCAATTCAA
66 ATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCATT-AATTCAA
41029715 A
130 A
* * * * * *
41029716 ATCATGACCAATTTTATTCGTGTTAGCTTATTTAATATTC-CTACTGCAAACATCTCGCTGATTT
1 ATCATGAACAATTTTATTCGAGTTAGCTAATTTAATA-TCGCTACTACAAACAGCTCGTTGATTT
*
41029780 AATATC-TCAATTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCATTAGATTC
65 AATATCGT-AGTTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCATTA-ATTC
41029844 AAA
128 AAA
* ** * *
41029847 ATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGTTACTATGAACAGATCATTGATTTA
1 ATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGCTACTACAAACAGCTCGTTGATTTA
* * **
41029912 ATATCGTGGTTGATATTATTAAGGTTCACTGATTCAAGAAAGCAACCTAAGTTCATTTAATTTCA
66 ATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCA-TTAA-TTCA
*
41029977 AG
129 AA
*
41029979 ATCATGAATAATTTTATT
1 ATCATGAACAATTTTATT
41029997 TTAGTCAATT
Statistics
Matches: 240, Mismatches: 34, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
130 4 0.02
131 208 0.87
132 28 0.12
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (130 bp):
ATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGCTACTACAAACAGCTCGTTGATTTA
ATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCATTAATTCAAA
Found at i:41033172 original size:60 final size:60
Alignment explanation
Indices: 41033077--41033196 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 60
41033067 TCGCATACCC
* * *
41033077 TTCTATGAGACTACACGATGTAGGTTCGCATCATCATATA-GGAAAACCCACATCGTATAA
1 TTCTATGAGACCACACGATGTAGGTTCACACCATCATA-ACGGAAAACCCACATCGTATAA
* * * *
41033137 TTCTATGAGACCGCACGATGTATGTTCACACCATCATAACGGCAAACCCACATTGTATAA
1 TTCTATGAGACCACACGATGTAGGTTCACACCATCATAACGGAAAACCCACATCGTATAA
41033197 ACACGTGTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
59 1 0.02
60 51 0.98
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (60 bp):
TTCTATGAGACCACACGATGTAGGTTCACACCATCATAACGGAAAACCCACATCGTATAA
Found at i:41038517 original size:22 final size:22
Alignment explanation
Indices: 41038485--41038534 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 22
41038475 ATAAATTCTT
*
41038485 TTAATTTTTATT-T-TTGGTTC
1 TTAATTTTTATTATATTGGTCC
41038505 -TAATTTTTATTATATTGGTCC
1 TTAATTTTTATTATATTGGTCC
41038526 TTAATTTTT
1 TTAATTTTT
41038535 TTTTAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 11 0.42
20 1 0.04
21 6 0.23
22 8 0.31
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.66
Consensus pattern (22 bp):
TTAATTTTTATTATATTGGTCC
Found at i:41040724 original size:19 final size:19
Alignment explanation
Indices: 41040702--41040740 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
41040692 AAGCTCATCA
*
41040702 ATACT-TTTAGAAATTAAAT
1 ATACTATTTA-AAATGAAAT
41040721 ATACTATTTAAAATGAAAT
1 ATACTATTTAAAATGAAAT
41040740 A
1 A
41040741 GATATCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
ATACTATTTAAAATGAAAT
Found at i:41041484 original size:18 final size:18
Alignment explanation
Indices: 41041441--41041476 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
41041431 ACATACCTAT
41041441 AAATTA-TTAATTTAATA
1 AAATTATTTAATTTAATA
*
41041458 AAATTATTTAATTTTATA
1 AAATTATTTAATTTAATA
41041476 A
1 A
41041477 TTTTATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTATTTAATTTAATA
Found at i:41044867 original size:13 final size:13
Alignment explanation
Indices: 41044851--41044880 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
41044841 TTGTATTGCA
*
41044851 TGTTTGATTTTCT
1 TGTTTGATTTCCT
41044864 TGTTTGATTTCCT
1 TGTTTGATTTCCT
41044877 TGTT
1 TGTT
41044881 AACCCCTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.10, G:0.17, T:0.67
Consensus pattern (13 bp):
TGTTTGATTTCCT
Found at i:41046489 original size:18 final size:18
Alignment explanation
Indices: 41046468--41046519 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
41046458 TGATGATGAT
41046468 AGTGATTCTGAGGATGGA
1 AGTGATTCTGAGGATGGA
*
41046486 AGTGGTTCTG-GTGAT-GA
1 AGTGATTCTGAG-GATGGA
*
41046503 AGATGATTCCGAGGATG
1 AG-TGATTCTGAGGATG
41046520 AAGACGAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
17 5 0.19
18 21 0.78
19 1 0.04
ACGTcount: A:0.25, C:0.08, G:0.38, T:0.29
Consensus pattern (18 bp):
AGTGATTCTGAGGATGGA
Found at i:41047589 original size:102 final size:102
Alignment explanation
Indices: 41047476--41047695 Score: 395
Period size: 102 Copynumber: 2.2 Consensus size: 102
41047466 AATTATATAT
*
41047476 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGCATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTACATTTTATAGCATTATATATTATGAT
* * *
41047541 TTTAGTAAATTTATATCATAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
41047578 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTACATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTACATTTTATAGCATTATATATTATGAT
41047643 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
41047680 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
41047696 ATTTTTATTA
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 113 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (102 bp):
TTTTATTAAATTATATTTAATAATAATTATGTTAAATTACATTTTATAGCATTATATATTATGAT
TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
Done.