Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 143 of 228
Found at i:43175906 original size:8 final size:8
Alignment explanation
Indices: 43175870--43175919 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
43175860 ACCCGACTAT
43175870 TTCTTTTC
1 TTCTTTTC
*
43175878 CT-TTTTC
1 TTCTTTTC
*
43175885 TT-TCTTC
1 TTCTTTTC
43175892 TTCTTTTC
1 TTCTTTTC
*
43175900 TTATTTTC
1 TTCTTTTC
43175908 TTCTTTT-
1 TTCTTTTC
43175915 TTCTT
1 TTCTT
43175920 CTTTATCTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
7 17 0.49
8 18 0.51
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (8 bp):
TTCTTTTC
Found at i:43177040 original size:22 final size:22
Alignment explanation
Indices: 43176992--43177044 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
43176982 AGTATTCTTG
43176992 TATATT-TTTTTCTAATTTTCC
1 TATATTCTTTTTCTAATTTTCC
*
43177013 T-T-TTCTTTTTCT-ATTATTCT
1 TATATTCTTTTTCTAATT-TTCC
43177033 TATATTCTTTTT
1 TATATTCTTTTT
43177045 TCTTTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
19 5 0.19
20 12 0.44
21 2 0.07
22 8 0.30
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (22 bp):
TATATTCTTTTTCTAATTTTCC
Found at i:43182573 original size:31 final size:29
Alignment explanation
Indices: 43182494--43182575 Score: 96
Period size: 31 Copynumber: 2.8 Consensus size: 29
43182484 GGTTTGCTGC
*
43182494 TGTTGGGTCTGATAGGTT-GGTCTACTGT
1 TGTTGGGTCTGATGGGTTGGGTCTACTGT
*
43182522 TGTTGGG-CTGACTGGATTGGGCTACTACTGT
1 TGTTGGGTCTGA-TGGGTTGGG-T-CTACTGT
*
43182553 TGTTGGGTCTGTTGGGTTGGGTC
1 TGTTGGGTCTGATGGGTTGGGTC
43182576 GCTTTTGGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
27 4 0.09
28 11 0.24
29 3 0.07
30 2 0.04
31 22 0.49
32 3 0.07
ACGTcount: A:0.09, C:0.12, G:0.39, T:0.40
Consensus pattern (29 bp):
TGTTGGGTCTGATGGGTTGGGTCTACTGT
Found at i:43182654 original size:10 final size:10
Alignment explanation
Indices: 43182636--43182695 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
43182626 CGATTATTTC
*
43182636 TCTTCCTTTT
1 TCTTTCTTTT
43182646 TCTTTCTTTTT
1 TCTTTC-TTTT
43182657 TCTTTCTTCTT
1 TCTTTCTT-TT
*
43182668 T-TTTTTATTT
1 TCTTTCT-TTT
*
43182678 TCTTCCTTTT
1 TCTTTCTTTT
43182688 TC-TTCTTT
1 TCTTTCTTT
43182696 ATCTCTTTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
9 5 0.12
10 19 0.46
11 17 0.41
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.77
Consensus pattern (10 bp):
TCTTTCTTTT
Found at i:43182658 original size:11 final size:11
Alignment explanation
Indices: 43182632--43182688 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
43182622 GACCCGATTA
*
43182632 TTTCTCTTCCTT
1 TTTCT-TTCTTT
43182644 TTTCTTTCTTT
1 TTTCTTTCTTT
43182655 TTTCTTTCTTCT
1 TTTCTTTCTT-T
*
43182667 TTT-TTT-TAT
1 TTTCTTTCTTT
*
43182676 TTTCTTCCTTT
1 TTTCTTTCTTT
43182687 TT
1 TT
43182689 CTTCTTTATC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 4 0.11
10 3 0.08
11 22 0.58
12 9 0.24
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTCTTTCTTT
Found at i:43182672 original size:17 final size:17
Alignment explanation
Indices: 43182641--43182695 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
43182631 ATTTCTCTTC
43182641 CTTT-TTCTTTCTTTTTT
1 CTTTCTTCTTT-TTTTTT
43182658 CTTTCTTCTTTTTTTTAT
1 CTTTCTTCTTTTTTTT-T
* *
43182676 -TTTCTTCCTTTTTCTT
1 CTTTCTTCTTTTTTTTT
43182692 CTTT
1 CTTT
43182696 ATCTCTTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 1 0.03
17 25 0.76
18 7 0.21
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (17 bp):
CTTTCTTCTTTTTTTTT
Found at i:43182672 original size:27 final size:27
Alignment explanation
Indices: 43182642--43182695 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
43182632 TTTCTCTTCC
**
43182642 TTTTT-CTTTCTTTTTTCTTTCTTCTTT
1 TTTTTACTTTCTTCCTT-TTTCTTCTTT
*
43182669 TTTTTATTTTCTTCCTTTTTCTTCTTT
1 TTTTTACTTTCTTCCTTTTTCTTCTTT
43182696 ATCTCTTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (27 bp):
TTTTTACTTTCTTCCTTTTTCTTCTTT
Found at i:43182678 original size:21 final size:22
Alignment explanation
Indices: 43182629--43182691 Score: 78
Period size: 21 Copynumber: 2.9 Consensus size: 22
43182619 TCGGACCCGA
43182629 TTATTTCTCTTCCTTTTTCTTTC
1 TTATTT-TCTTCCTTTTTCTTTC
*
43182652 TT-TTTTCTTTCTTCTTT-TTT-
1 TTATTTTCTTCCTT-TTTCTTTC
43182672 TTATTTTCTTCCTTTTTCTT
1 TTATTTTCTTCCTTTTTCTT
43182692 CTTTATCTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
20 5 0.14
21 22 0.63
22 6 0.17
23 2 0.06
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (22 bp):
TTATTTTCTTCCTTTTTCTTTC
Found at i:43182690 original size:24 final size:24
Alignment explanation
Indices: 43182636--43182691 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
43182626 CGATTATTTC
*
43182636 TCTTCCTTTTTCTTTCTTTTTTCTT
1 TCTT-CTTTTTCTTTATTTTTTCTT
43182661 TCTTCTTTTT-TTTATTTTCTTCCTT
1 TCTTCTTTTTCTTTATTTT-TT-CTT
43182686 T-TTCTT
1 TCTTCTT
43182692 CTTTATCTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 7 0.25
24 13 0.46
25 8 0.29
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (24 bp):
TCTTCTTTTTCTTTATTTTTTCTT
Found at i:43183745 original size:30 final size:30
Alignment explanation
Indices: 43183682--43183784 Score: 142
Period size: 30 Copynumber: 3.5 Consensus size: 30
43183672 CAAAGCTCCA
*
43183682 AGGGCTAAAATGTAATTTTAGAAAAAAA-G
1 AGGGCCAAAATGTAATTTTAGAAAAAAATG
43183711 -GGGCCAAAATGT-ATTTTCAGAAAAAAATG
1 AGGGCCAAAATGTAATTTT-AGAAAAAAATG
*
43183740 AGGGCCAAAATGTAATTTTAG-AAAAATTG
1 AGGGCCAAAATGTAATTTTAGAAAAAAATG
43183769 AGGGGCCAAAATGTAA
1 A-GGGCCAAAATGTAA
43183785 ATAGTATTCT
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
27 5 0.07
28 20 0.30
29 9 0.13
30 28 0.42
31 5 0.07
ACGTcount: A:0.47, C:0.08, G:0.22, T:0.23
Consensus pattern (30 bp):
AGGGCCAAAATGTAATTTTAGAAAAAAATG
Found at i:43184422 original size:40 final size:40
Alignment explanation
Indices: 43184390--43184827 Score: 473
Period size: 40 Copynumber: 10.9 Consensus size: 40
43184380 CACACCAGAT
* * * * *
43184390 AAAAGCTCGTAACAGCTAATCCAACCGAAACACGCCGAGC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* * * * *
43184430 AAAAGCTCATAAGAGCTGATCTAATCAAAACATGCCAAAT
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* * *
43184470 AGAAGCTTATAAGAGCTGATCCAACCGAAACATGCCAAAC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* * * *
43184510 AAAAGCTCATAAGAGCTGATCCACCCAAAACATGCGAAAC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
*
43184550 AGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* *
43184590 AGAAGCTCATAAGAGCTGATCCACCCGAAACACGCCAAAC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* *
43184630 AAAAGCTCATAAGAGCTGATCCAACCAAAACACACCAAAC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* * * * * *
43184670 AAAAGCTCATTAGAACTGGTCC-ACCTAAAACACGCTAGAC
1 AAAAGCTCATAAGAGCTGATCCAACC-GAAACACGCCAAAC
* * * * * *
43184710 AGATGCTCATAAGAGTTGATCCAACCGAAACACACAAAAT
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* * ** *
43184750 AGAAGCTCGTAAGATTTGATTCAACCGAAACACGCCAAAC
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
* * * *
43184790 AGAAGCTCATAAGAGCTGGTCCAACCAAAACACACCAA
1 AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAA
43184828 CTACAGAGTA
Statistics
Matches: 334, Mismatches: 62, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
39 3 0.01
40 328 0.98
41 3 0.01
ACGTcount: A:0.43, C:0.27, G:0.16, T:0.14
Consensus pattern (40 bp):
AAAAGCTCATAAGAGCTGATCCAACCGAAACACGCCAAAC
Found at i:43190184 original size:13 final size:13
Alignment explanation
Indices: 43190133--43190185 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
43190123 AGTTCTTCAT
*
43190133 TGCTTTTGAAAAG
1 TGCTTTTCAAAAG
* ** *
43190146 TGCTGTGGAAAAA
1 TGCTTTTCAAAAG
43190159 TGCTTTTCAAAAG
1 TGCTTTTCAAAAG
43190172 TGCTTTTCAAAAG
1 TGCTTTTCAAAAG
43190185 T
1 T
43190186 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (13 bp):
TGCTTTTCAAAAG
Found at i:43192391 original size:27 final size:27
Alignment explanation
Indices: 43192337--43192550 Score: 281
Period size: 27 Copynumber: 8.0 Consensus size: 27
43192327 GGGTATAATA
43192337 GTCATTTTACCCTAT-G-GGGTATTTCG
1 GTCATTTTACCCT-TCGAGGGTATTTCG
*
43192363 GTCATTTTACCCTTTGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* *
43192390 GTCA-TTTACCCTTTCAAGGGTATTTTG
1 GTCATTTTACCC-TTCGAGGGTATTTCG
* * *
43192417 GTTATTTTACCCTTTGAGGGTATTTTG
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
43192444 ATCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* * *
43192471 ATCATTTTACCCTTCAAGGGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
43192498 GTCATTTTACCCTTCGAGGGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
43192525 TTCATTTTACCCTTCGAGGGTATTTC
1 GTCATTTTACCCTTCGAGGGTATTTC
43192551 AGTTATTTGC
Statistics
Matches: 169, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
25 1 0.01
26 21 0.12
27 140 0.83
28 7 0.04
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTCG
Found at i:43201654 original size:19 final size:19
Alignment explanation
Indices: 43201626--43201681 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
43201616 CGGGTTTATT
*
43201626 CACTTCGTGTGCTAGTATG
1 CACTTTGTGTGCTAGTATG
*
43201645 CACTTTGTGTG-TCAATATG
1 CACTTTGTGTGCT-AGTATG
* *
43201664 CACTATATGTGCTAGTAT
1 CACTTTGTGTGCTAGTAT
43201682 ATTTGCTCCG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.03
19 28 0.93
20 1 0.03
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (19 bp):
CACTTTGTGTGCTAGTATG
Found at i:43201722 original size:43 final size:43
Alignment explanation
Indices: 43201661--43201749 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
43201651 GTGTGTCAAT
* *
43201661 ATGCACTATATGTGCTAGTATATTTGCTCCGGTTAGTCTGATG
1 ATGCACTATATGTGCTAGTATACTTGCTCCGGTTAGTCTAATG
* * *
43201704 ATGCACTATGTGTGCTAGTGTACTTGCTCCGGTTTGTCTAATG
1 ATGCACTATATGTGCTAGTATACTTGCTCCGGTTAGTCTAATG
43201747 ATG
1 ATG
43201750 TAATAGCCTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (43 bp):
ATGCACTATATGTGCTAGTATACTTGCTCCGGTTAGTCTAATG
Found at i:43217297 original size:20 final size:18
Alignment explanation
Indices: 43217254--43217315 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 18
43217244 AATATTCTAG
43217254 ATATCAAAAT-AAAACAA
1 ATATCAAAATAAAAACAA
43217271 A-AT-AAAATAAAAAGTCAA
1 ATATCAAAATAAAAA--CAA
43217289 ATATCAAAATAGAAAAACAA
1 ATATCAAAAT--AAAAACAA
43217309 ATATCAA
1 ATATCAA
43217316 TAGTATAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
15 5 0.13
16 6 0.16
17 1 0.03
18 4 0.11
19 2 0.05
20 15 0.39
22 5 0.13
ACGTcount: A:0.69, C:0.10, G:0.03, T:0.18
Consensus pattern (18 bp):
ATATCAAAATAAAAACAA
Found at i:43219590 original size:42 final size:43
Alignment explanation
Indices: 43219502--43219625 Score: 187
Period size: 42 Copynumber: 2.9 Consensus size: 43
43219492 GCGTTTACAG
* * * *
43219502 AAAAAATGCCGCTAAAGGTCATGTTTTTTAACGGCGCTTCGAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCGAA
*
43219545 AAAAAACGTCGCTAAAGATCATGTTCTTTAGCGGCGCTTCG-A
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCGAA
*
43219587 AAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
43219626 AAAAAATCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 38 0.51
43 36 0.49
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCGAA
Found at i:43219669 original size:63 final size:63
Alignment explanation
Indices: 43219569--43219691 Score: 203
Period size: 63 Copynumber: 2.0 Consensus size: 63
43219559 AAGATCATGT
*
43219569 TCTTTAGCGGCGCTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAAAAA
1 TCTTTAGCGGCACTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAAAAA
* *
43219632 TCTTTAGCGGCACTTTC-AAAAAAACGCCGCTAGAGATCATGTTCTTTAGCGGCGCTTAAA
1 TCTTTAGCGGCAC-TTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAA
43219692 GAAAAACGCC
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 53 0.95
64 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (63 bp):
TCTTTAGCGGCACTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAAAAA
Found at i:43219697 original size:42 final size:41
Alignment explanation
Indices: 43219632--43219772 Score: 183
Period size: 42 Copynumber: 3.4 Consensus size: 41
43219622 GCTTAAAAAA
* * *
43219632 TCTTTAGCGGCACTTTCAAAAAAACGCCGCTAGAGATCATGT
1 TCTTTAGCGGCGC-TTAAAAAAAACGCCGCTAAAGATCATGT
*
43219674 TCTTTAGCGGCGCTTAAAGAAAAACGCCGCTAAAGATCATAT
1 TCTTTAGCGGCGCTTAAA-AAAAACGCCGCTAAAGATCATGT
** * *
43219716 TCTTTAGCGGCGCTTGGTAAAAAACGCCTCTATAGATCATGT
1 TCTTTAGCGGCGCTT-AAAAAAAACGCCGCTAAAGATCATGT
43219758 TCTTTAGCGGCGCTT
1 TCTTTAGCGGCGCTT
43219773 TCATCACAAA
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
41 4 0.05
42 83 0.94
43 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (41 bp):
TCTTTAGCGGCGCTTAAAAAAAACGCCGCTAAAGATCATGT
Found at i:43219769 original size:147 final size:147
Alignment explanation
Indices: 43219502--43219772 Score: 409
Period size: 147 Copynumber: 1.8 Consensus size: 147
43219492 GCGTTTACAG
* * * *
43219502 AAAAAATGCCGCTAAAGGTCATGTTTTTTAACGGCGCTTCGAAAAAAAACGTCGCTAAAGATCAT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAACGGCGCTTC-AAAAAAAACGCCGCTAAAGATCAT
*
43219567 GTTCTTTAGCGGCGCTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAAAAA
65 ATTCTTTAGCGGCGCTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAAAAA
43219632 TCTTTAGCGGCACTTTCA
130 TCTTTAGCGGCACTTTCA
* *
43219650 AAAAAACGCCGCTAGAGATCATGTTCTTTAGCGGCGCTT-AAAGAAAAACGCCGCTAAAGATCAT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAACGGCGCTTCAAA-AAAAACGCCGCTAAAGATCAT
* * * * *
43219714 ATTCTTTAGCGGCGCTTGGTAAAAAACGCCTCTATAGATCATGTTCTTTAGCGGCGCTT
65 ATTCTTTAGCGGCGCTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTT
43219773 TCATCACAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
146 3 0.03
147 73 0.66
148 34 0.31
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (147 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAACGGCGCTTCAAAAAAAACGCCGCTAAAGATCATA
TTCTTTAGCGGCGCTTCGAAAAAAACGCCGCTAAAGATCATGATCTTTAGCGGCGCTTAAAAAAT
CTTTAGCGGCACTTTCA
Found at i:43219827 original size:43 final size:42
Alignment explanation
Indices: 43219632--43219831 Score: 152
Period size: 42 Copynumber: 4.7 Consensus size: 42
43219622 GCTTAAAAAA
* ** * * * *
43219632 TCTTTAGCGGCACTTTCAAAAAAACGCCGCTAGAGATCATGT
1 TCTTTAGCGGCGCTTTGTAAAAAACGCCACAAAAGATAATGT
** * * * *
43219674 TCTTTAGCGGCGC-TTAAAGAAAAACGCCGCTAAAGATCATAT
1 TCTTTAGCGGCGCTTTGTA-AAAAACGCCACAAAAGATAATGT
* * * * *
43219716 TCTTTAGCGGCGCTTGGTAAAAAACGCCTCTATAGATCATGT
1 TCTTTAGCGGCGCTTTGTAAAAAACGCCACAAAAGATAATGT
* * *
43219758 TCTTTAGCGGCGCTTTCATCACAAACGCCACGAAAAG-TAATGT
1 TCTTTAGCGGCGCTTT-GTAAAAAACGCCAC-AAAAGATAATGT
*
43219801 TCTTTAGTGGCGCTATTGTAAAAAACGCCAC
1 TCTTTAGCGGCGCT-TTGTAAAAAACGCCAC
43219832 TAATTTTGGG
Statistics
Matches: 131, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
41 4 0.03
42 81 0.62
43 41 0.31
44 5 0.04
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTGTAAAAAACGCCACAAAAGATAATGT
Found at i:43220241 original size:21 final size:21
Alignment explanation
Indices: 43220217--43220286 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
43220207 GCTTCTCTCG
* *
43220217 CTGCTTCTCGCCCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
43220238 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
43220259 CTACTTCCCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
43220280 TTGCTTC
1 CTGCTTC
43220287 CCTCATTGCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.06, C:0.43, G:0.17, T:0.34
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:43220287 original size:21 final size:21
Alignment explanation
Indices: 43220229--43220290 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
43220219 GCTTCTCGCC
*
43220229 CTGCAGCCTCTGCTTCTCTCG
1 CTGCAGCCTCTGCTTCCCTCG
* *
43220250 CTGTAGCCTCTACTTCCCTCG
1 CTGCAGCCTCTGCTTCCCTCG
*
43220271 CTGCAGCCTTTGCTTCCCTC
1 CTGCAGCCTCTGCTTCCCTC
43220291 ATTGCCACCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.06, C:0.44, G:0.16, T:0.34
Consensus pattern (21 bp):
CTGCAGCCTCTGCTTCCCTCG
Found at i:43222842 original size:9 final size:9
Alignment explanation
Indices: 43222825--43223141 Score: 254
Period size: 9 Copynumber: 36.3 Consensus size: 9
43222815 TCATAGATAA
*
43222825 GTAAATTAT
1 GTAAGTTAT
43222834 GTAAGTTAT
1 GTAAGTTAT
*
43222843 GTACGTGTA-
1 GTAAGT-TAT
43222852 -TAAGTTAT
1 GTAAGTTAT
43222860 GTAAGTTAT
1 GTAAGTTAT
*
43222869 GT-A-TTAA
1 GTAAGTTAT
*
43222876 GTAAGCTAT
1 GTAAGTTAT
*
43222885 GTAAGTTGT
1 GTAAGTTAT
43222894 GT-A-TTAT
1 GTAAGTTAT
43222901 GTAAGTTAT
1 GTAAGTTAT
43222910 GTAAGTTAT
1 GTAAGTTAT
** *
43222919 CAAAGTAAT
1 GTAAGTTAT
*
43222928 GTATGTTAT
1 GTAAGTTAT
43222937 GTAAG-T-T
1 GTAAGTTAT
43222944 GTAAGTTAT
1 GTAAGTTAT
*
43222953 -TATGTATTAT
1 GTAAG--TTAT
43222963 GTAAGTTAT
1 GTAAGTTAT
43222972 GTAAGTTAAAT
1 GTAAGTT--AT
43222983 GT-A-TTAT
1 GTAAGTTAT
*
43222990 GTAGGTTAT
1 GTAAGTTAT
*
43222999 GTAAGTTGT
1 GTAAGTTAT
*
43223008 GTAAGATAT
1 GTAAGTTAT
* *
43223017 TTAGGTTAT
1 GTAAGTTAT
*
43223026 GTAAGTTTT
1 GTAAGTTAT
43223035 GT-A-TTAT
1 GTAAGTTAT
43223042 GTAAGTTAT
1 GTAAGTTAT
43223051 GTAAGTTAT
1 GTAAGTTAT
43223060 GTAAGTTAAAT
1 GTAAGTT--AT
43223071 GT-A-TTAT
1 GTAAGTTAT
*
43223078 GTAGGTTAT
1 GTAAGTTAT
*
43223087 GTAAGTTGT
1 GTAAGTTAT
*
43223096 GTAAGATAT
1 GTAAGTTAT
* *
43223105 TTAAGTTAC
1 GTAAGTTAT
*
43223114 GTAAGTTTT
1 GTAAGTTAT
43223123 GT-A-TTAT
1 GTAAGTTAT
43223130 GTAAGTTAT
1 GTAAGTTAT
43223139 GTA
1 GTA
43223142 TGCTATGTAT
Statistics
Matches: 241, Mismatches: 43, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
7 36 0.15
8 17 0.07
9 169 0.70
10 8 0.03
11 11 0.05
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:43222896 original size:25 final size:25
Alignment explanation
Indices: 43222822--43222918 Score: 117
Period size: 25 Copynumber: 3.8 Consensus size: 25
43222812 TAATCATAGA
*
43222822 TAAGTAAATTATGTAAGTTATGTACGT
1 TAAGTAAGTTATGTAAGTTATGTA--T
43222849 GT-A-TAAGTTATGTAAGTTATGTAT
1 -TAAGTAAGTTATGTAAGTTATGTAT
* *
43222873 TAAGTAAGCTATGTAAGTTGTGTAT
1 TAAGTAAGTTATGTAAGTTATGTAT
*
43222898 TATGTAAGTTATGTAAGTTAT
1 TAAGTAAGTTATGTAAGTTAT
43222919 CAAAGTAATG
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
23 1 0.02
24 2 0.03
25 37 0.61
26 19 0.31
27 1 0.02
28 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (25 bp):
TAAGTAAGTTATGTAAGTTATGTAT
Found at i:43222942 original size:36 final size:36
Alignment explanation
Indices: 43222825--43223150 Score: 211
Period size: 34 Copynumber: 9.3 Consensus size: 36
43222815 TCATAGATAA
* * *
43222825 GTAAATTATGTAAGTTATGTACGTGTA--TAAGTTAT
1 GTAAGTTATGTAAGTTATGTAAGT-TATGTAAGTAAT
* * **
43222860 GTAAGTTATGT-A-TTAAGTAAGCTATGTAAGTTGT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTAAT
**
43222894 GT-A-TTATGTAAGTTATGTAAGTTATCAAAGTAAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTAAT
* *
43222928 GTATGTTATGTAAG-T-TGTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTA--AT
* *
43222963 GTAAGTTATGTAAGTTAAATGT-A-TTATGTAGGTTAT
1 GTAAGTTATGTAAGTT--ATGTAAGTTATGTAAGTAAT
* * * * **
43222999 GTAAGTTGTGTAAGATATTTAGGTTATGTAAGTTTT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTAAT
43223035 GT-A-TTATGTAAGTTATGTAAGTTATGTAAGTTAAAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAG-T-AAT
* *
43223071 GT-A-TTATGTAGGTTATGTAAGTTGTGTAAG-ATAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTA-AT
* * * *
43223105 TTAAGTTACGTAAGTTTTGT-A-TTATGTAAGTTAT
1 GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTAAT
* *
43223139 GTATGCTATGTA
1 GTAAGTTATGTA
43223151 TTACGTAAGT
Statistics
Matches: 229, Mismatches: 41, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
32 8 0.03
33 14 0.06
34 85 0.37
35 30 0.13
36 80 0.35
37 4 0.02
38 5 0.02
39 3 0.01
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (36 bp):
GTAAGTTATGTAAGTTATGTAAGTTATGTAAGTAAT
Found at i:43222957 original size:19 final size:19
Alignment explanation
Indices: 43222933--43222971 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
43222923 GTAATGTATG
43222933 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
43222952 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
43222971 T
1 T
43222972 GTAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:43223081 original size:88 final size:88
Alignment explanation
Indices: 43222876--43223150 Score: 362
Period size: 88 Copynumber: 3.1 Consensus size: 88
43222866 TATGTATTAA
* * * ** * *
43222876 GTAAGCTATGTAAGTT--GTGTATTATGTAAGTTATGTAAGTTATCAAAG-TAATGTATGTTATG
1 GTAAGCTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGAT-ATTTAAGTTATG
*
43222938 TAAGTTGTAAGTTATTATGT-A-TTAT
65 TAAGTT-T-TG-TATTATGTAAGTTAT
* *
43222963 GTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAGGTTATGT
1 GTAAGCTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGT
43223028 AAGTTTTGTATTATGTAAGTTAT
66 AAGTTTTGTATTATGTAAGTTAT
* *
43223051 GTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTACGT
1 GTAAGCTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGT
43223116 AAGTTTTGTATTATGTAAGTTAT
66 AAGTTTTGTATTATGTAAGTTAT
*
43223139 GTATGCTATGTA
1 GTAAGCTATGTA
43223151 TTACGTAAGT
Statistics
Matches: 170, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
86 8 0.05
87 17 0.10
88 101 0.59
89 43 0.25
90 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.45
Consensus pattern (88 bp):
GTAAGCTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTTATGT
AAGTTTTGTATTATGTAAGTTAT
Found at i:43223297 original size:23 final size:23
Alignment explanation
Indices: 43223271--43223314 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
43223261 AAAAAATTAT
*
43223271 AAGTTATGTATTATGTAAGTTAA
1 AAGTAATGTATTATGTAAGTTAA
43223294 AAGTAATGTATTATGTAAGTT
1 AAGTAATGTATTATGTAAGTT
43223315 TACATATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (23 bp):
AAGTAATGTATTATGTAAGTTAA
Found at i:43224383 original size:18 final size:18
Alignment explanation
Indices: 43224360--43224397 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
43224350 TTTCTTCAAA
43224360 AATATTAACACTGCAAGT
1 AATATTAACACTGCAAGT
43224378 AATATTAACACTGCAAGT
1 AATATTAACACTGCAAGT
43224396 AA
1 AA
43224398 CTAACAAACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (18 bp):
AATATTAACACTGCAAGT
Found at i:43225737 original size:365 final size:365
Alignment explanation
Indices: 43225062--43225771 Score: 1206
Period size: 365 Copynumber: 1.9 Consensus size: 365
43225052 TCGACATTTG
*
43225062 CGGCGTTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGTGCCATTTCATAAA
1 CGGCATTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGTGCCATTTCATAAA
* *
43225127 AATATAAGGAAACATTCTGGCGTTTTCCCAAACACGCCACAATTAATATATTATCGAACCGGCGT
66 AATATAAGGAAACATTCTGGCGTTTTCCCAAAAACGCCACAATTAATATATTATCGAACCGGCGC
** * *
43225192 CGTTTTCAGTAAATTTTATACATCCTTGCGGCATTTTTAATAAAACGCCACTAAAAGATTCCATC
131 CGTTTTCAAAAAATTTTATACATCCTTGCGACATTTATAATAAAACGCCACTAAAAGATTCCATC
*
43225257 CTTCAACTGAAACGGTGCCGTTTTCGCAAAGTTCAAATATTATTTACGCCGTTTTTAGGAAAAAC
196 CTTCAACTGAAACGGCGCCGTTTTCGCAAAGTTCAAATATTATTTACGCCGTTTTTAGGAAAAAC
* *
43225322 GCCACAACTAAAATTTATTCCCTAAGCCGAAACGACACCGTATCGGTAAATGCAATAAATATTTG
261 GCCACAACTAAAACTTATTCCCTAAGCCGAAACAACACCGTATCGGTAAATGCAATAAATATTTG
43225387 TGGCATTTTTTATCAAAACGTAGGTAATGTCTACCTTTTA
326 TGGCATTTTTTATCAAAACGTAGGTAATGTCTACCTTTTA
*
43225427 CGGCATTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGTGCCATTTTATAAA
1 CGGCATTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGTGCCATTTCATAAA
43225492 AATATAAGGAAACATTCTGGCGTTTTCCCAAAAACGCCACAATTAATATATTATCGAACCGGCGC
66 AATATAAGGAAACATTCTGGCGTTTTCCCAAAAACGCCACAATTAATATATTATCGAACCGGCGC
* * *
43225557 CGTTTTCAAAAAATTTTATACATCCTTGCGACGTTTATAATAAAATGCCACTAAAATATTCCATC
131 CGTTTTCAAAAAATTTTATACATCCTTGCGACATTTATAATAAAACGCCACTAAAAGATTCCATC
* * * * *
43225622 CTTCAACTGAAACGGCGCTGTTTTGGCAAAGTTTAAATATTATTTACGGC-TCTTTTCGGAAAAA
196 CTTCAACTGAAACGGCGCCGTTTTCGCAAAGTTCAAATATTATTTACGCCGT-TTTTAGGAAAAA
* *
43225686 CGCCACAACTAAAACTTATTCCCTAAGCCGAAACAACGCCGTATCGGTAAATGCAATAAATTTTT
260 CGCCACAACTAAAACTTATTCCCTAAGCCGAAACAACACCGTATCGGTAAATGCAATAAATATTT
*
43225751 GTGGCGTTTTTTATCAAAACG
325 GTGGCATTTTTTATCAAAACG
43225772 CCGCAAAATC
Statistics
Matches: 322, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
364 1 0.00
365 321 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.30
Consensus pattern (365 bp):
CGGCATTTTAATTAAAAACGCCACTAAAATTTCAAGTACAGAAAGAAACGGTGCCATTTCATAAA
AATATAAGGAAACATTCTGGCGTTTTCCCAAAAACGCCACAATTAATATATTATCGAACCGGCGC
CGTTTTCAAAAAATTTTATACATCCTTGCGACATTTATAATAAAACGCCACTAAAAGATTCCATC
CTTCAACTGAAACGGCGCCGTTTTCGCAAAGTTCAAATATTATTTACGCCGTTTTTAGGAAAAAC
GCCACAACTAAAACTTATTCCCTAAGCCGAAACAACACCGTATCGGTAAATGCAATAAATATTTG
TGGCATTTTTTATCAAAACGTAGGTAATGTCTACCTTTTA
Found at i:43225799 original size:4 final size:4
Alignment explanation
Indices: 43225790--43225819 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
43225780 TCTTACATAT
43225790 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
43225820 GTATCATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:43225856 original size:24 final size:23
Alignment explanation
Indices: 43225829--43225909 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 23
43225819 TGTATCATTC
43225829 ATTTAAATAATTAATTACCTATCT
1 ATTTAAATAATTAATTACCTAT-T
*
43225853 ATTTAAACAATTAATTACCTAAAAATT
1 ATTTAAATAATTAATTACCT----ATT
43225880 AATTTAAATAATTAATTACCTATTT
1 -ATTTAAATAATTAATTACCTA-TT
43225905 ATTTA
1 ATTTA
43225910 TTTGCTTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
24 25 0.51
25 2 0.04
27 1 0.02
28 21 0.43
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTAAATAATTAATTACCTATT
Found at i:43225912 original size:28 final size:26
Alignment explanation
Indices: 43225829--43225912 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 26
43225819 TGTATCATTC
*
43225829 ATTTAAATAATTAATTACC--TATCT
1 ATTTAAATAATTAATTACCTATATTT
* * *
43225853 ATTTAAACAATTAATTACCTAAAAATTA
1 ATTTAAATAATTAATTACCT--ATATTT
43225881 ATTTAAATAATTAATTACCTATTTATTT
1 ATTTAAATAATTAATTACCTA--TATTT
43225909 ATTT
1 ATTT
43225913 GCTTATTTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
24 18 0.38
26 1 0.02
28 28 0.60
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (26 bp):
ATTTAAATAATTAATTACCTATATTT
Found at i:43226365 original size:14 final size:14
Alignment explanation
Indices: 43226346--43226385 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
43226336 GATCCTAAAT
*
43226346 CCCTAACCCTTAAC
1 CCCTAAACCTTAAC
* *
43226360 CCCTAATCCATAAC
1 CCCTAAACCTTAAC
43226374 CCCTAAACCTTA
1 CCCTAAACCTTA
43226386 TTTAATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:43226646 original size:20 final size:21
Alignment explanation
Indices: 43226621--43226664 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
43226611 ATCTTAAATT
*
43226621 AACCATATATA-TATACCCTA
1 AACCATATATATTAAACCCTA
*
43226641 AACCATATTTATTAAACCCTA
1 AACCATATATATTAAACCCTA
43226662 AAC
1 AAC
43226665 TATAATGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (21 bp):
AACCATATATATTAAACCCTA
Found at i:43227474 original size:114 final size:114
Alignment explanation
Indices: 43227147--43227731 Score: 604
Period size: 115 Copynumber: 5.1 Consensus size: 114
43227137 GGCGCATCCT
* * * * * * * * *
43227147 CAAAAATGCCACTAAAGCACTGAGCATTAGCGGCACTTTA-TTAAAAATGCCACTAAAACCAC-A
1 CAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGC-TTACTTAAAAACGCCGCTAAATCCCCGA
* * * * * * **
43227210 GAAGCTAAGAAAATGGCGTCGTTGGGCTTAGGTTTCTTTATAGCGCCTTCC
65 -AAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAG
* * * * *
43227261 CAAAAATGCCGCTAAAAGCCTGAGCATTAGCGGCTCTTACTTAAAAAACGCCGGTAAATCCTCGA
1 CAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTACTT-AAAAACGCCGCTAAATCCCCGA
* * * * *
43227326 AAGCTCAGAAAACGGTGTCGTTGGGCTGAGGTTTTTTTATGGTGCTTTAT
65 AAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAG
* * **
43227376 CAAAAACGCCGCTAAAACCCTGAGCATTATCGGAGCTTACTTAAAAACATCGCTAAATCCCCGAA
1 CAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCGCTAAATCCCCGAA
* *
43227441 AGCTCAAAAAACGGCGTCGTCGGGCTTAGGTTTTTTTGTGGCGCTTTAG
66 AGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAG
* * * *
43227490 CAAAAACACCGCTAAAGCCCCTGAGCATTAGCGGCGCTTAATTAAAAACGCCGTTAAATCCCCGA
1 CAAAAACGCCGCTAAA-ACCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCGCTAAATCCCCGA
* *
43227555 AAGCTCAGAAAATGGCGTCGTTGGGCTTAGATTTTTTTGTGGCGCTTTAG
65 AAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAG
* * * * * * ** * * *
43227605 CAAAAACACCGCTAAAGCCCTGGGTATTAGCGTCGCTTCCCGAAAAATGCCACTAAATCCTCGAA
1 CAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCGCTAAATCCCCGAA
* * *
43227670 AGCTCAGAAAACGACGTCGTTGGGATTAGG--TTTTTGTGGTGCTTTA-
66 AGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAG
* *
43227716 TAAAAGCGCCGCTAAA
1 CAAAAACGCCGCTAAA
43227732 TCCCCGAAAG
Statistics
Matches: 399, Mismatches: 68, Indels: 11
0.83 0.14 0.02
Matches are distributed among these distances:
111 13 0.03
112 15 0.04
113 3 0.01
114 172 0.43
115 195 0.49
116 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (114 bp):
CAAAAACGCCGCTAAAACCCTGAGCATTAGCGGCGCTTACTTAAAAACGCCGCTAAATCCCCGAA
AGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGTGGCGCTTTAG
Found at i:43227550 original size:229 final size:229
Alignment explanation
Indices: 43227211--43227704 Score: 589
Period size: 229 Copynumber: 2.2 Consensus size: 229
43227201 AAAACCACAG
* * * **
43227211 AAGCT-AAGAAAATGGCGTCGTTGGGCTTAGGTTTCTTTATAGCGCCTTCCCAAAAATGCCGCTA
1 AAGCTCAA-AAAACGGCGTCGTTGGGCTTAGGTTTTTTTATAGCGCCTTACCAAAAACACCGCTA
* * *
43227275 AAAGCCTGAGCATTAGCGGCTCTTACTTAAAAAACGCCGGTAAATCCTCGAAAGCTCAGAAAACG
65 AAAGCCTGAGCATTAGCGGCGCTTAATTAAAAAACGCCGGTAAATCCCCGAAAGCTCAGAAAACG
* * * * *
43227340 GTGTCGTTGGGCTGAGGTTTTTTTATGGTGCTTTATCAAAAACGCCGCTAAAACCCTGAGCATTA
130 GCGTCGTTGGGCTGAGATTTTTTTATGGCGCTTTAGCAAAAACACCGCTAAAACCCTGAGCATTA
* ** * *
43227405 TCGGAGCTTACTTAAAAACATCGCTAAATCCCCGA
195 GCGGAGCTTACCGAAAAACACCACTAAATCCCCGA
* * * * *
43227440 AAGCTCAAAAAACGGCGTCGTCGGGCTTAGGTTTTTTTGTGGCGCTTTAGCAAAAACACCGCT-A
1 AAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTATAGCGCCTTACCAAAAACACCGCTAA
* *
43227504 AAGCCCCTGAGCATTAGCGGCGCTTAATT-AAAAACGCCGTTAAATCCCCGAAAGCTCAGAAAAT
66 AAG--CCTGAGCATTAGCGGCGCTTAATTAAAAAACGCCGGTAAATCCCCGAAAGCTCAGAAAAC
* * * * *
43227568 GGCGTCGTTGGGCTTAGATTTTTTTGTGGCGCTTTAGCAAAAACACCGCTAAAGCCCTGGGTATT
129 GGCGTCGTTGGGCTGAGATTTTTTTATGGCGCTTTAGCAAAAACACCGCTAAAACCCTGAGCATT
** * ** *
43227633 AGCGTCGCTTCCCGAAAAATGCCACTAAATCCTCGA
194 AGCGGAGCTTACCGAAAAACACCACTAAATCCCCGA
* * *
43227669 AAGCTCAGAAAACGACGTCGTTGGGATTAGGTTTTT
1 AAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTT
43227705 GTGGTGCTTT
Statistics
Matches: 222, Mismatches: 40, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
228 4 0.02
229 194 0.87
230 24 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (229 bp):
AAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTATAGCGCCTTACCAAAAACACCGCTAA
AAGCCTGAGCATTAGCGGCGCTTAATTAAAAAACGCCGGTAAATCCCCGAAAGCTCAGAAAACGG
CGTCGTTGGGCTGAGATTTTTTTATGGCGCTTTAGCAAAAACACCGCTAAAACCCTGAGCATTAG
CGGAGCTTACCGAAAAACACCACTAAATCCCCGA
Found at i:43227855 original size:183 final size:184
Alignment explanation
Indices: 43227532--43227876 Score: 516
Period size: 183 Copynumber: 1.9 Consensus size: 184
43227522 GGCGCTTAAT
* * *
43227532 TAAAAACGCCGTTAAATCCCCGAAAGCTCAGAAAATGGCGTCGTTGGGCTTAGATTTTTTTGTGG
1 TAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGAGTTTTTTGTGG
* * * * *
43227597 CGCTTTAGCAAAAACACCGCTAAAGCCCTGGGTATTAGCGTCGCTTCCCGAAAAATGCCACTAAA
66 CACTTTAGCAAAAACACCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCGAAAAAAGCCACTAAA
*
43227662 TCCTCGAAAGCTC-AGAAAACGACGTCGTTGGGATTAGGTTTTTGTGGTGCTTTA
131 TCCCCGAAAGCTCGA-AAAACGACGTCGTTGGGATTAGGTTTTTGTGGTGCTTTA
*
43227716 TAAAAGCGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAG-GTTTTTTGTGG
1 TAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGAGTTTTTTGTGG
* * * *
43227780 CACTTTCGCAAAATCGCCGCTAAAGCCCTAGGCATTAGCGGCGCTTACCC-AAAAAAGCCGCTAA
66 CACTTTAGCAAAAACACCGCTAAAGCCCTAGGCATTAGCGGCGCTT-CCCGAAAAAAGCCACTAA
*
43227844 ATCCCCGAAAGCTCGAAAAACGGCGTCGTTGGG
130 ATCCCCGAAAGCTCGAAAAACGACGTCGTTGGG
43227877 CTCAGGTATT
Statistics
Matches: 144, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
183 90 0.62
184 54 0.38
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (184 bp):
TAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGAGTTTTTTGTGG
CACTTTAGCAAAAACACCGCTAAAGCCCTAGGCATTAGCGGCGCTTCCCGAAAAAAGCCACTAAA
TCCCCGAAAGCTCGAAAAACGACGTCGTTGGGATTAGGTTTTTGTGGTGCTTTA
Found at i:43228479 original size:13 final size:14
Alignment explanation
Indices: 43228460--43228497 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
43228450 CAATGGCATA
43228460 GAAATAATATAAAC
1 GAAATAATATAAAC
43228474 -AAATAA-ATAAAC
1 GAAATAATATAAAC
43228486 GAAATTAATATA
1 GAAA-TAATATA
43228498 CAAAAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:43228921 original size:30 final size:28
Alignment explanation
Indices: 43228870--43228955 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 28
43228860 ACATGTACAT
*
43228870 ATATAAAAAAAATTATCTACATATATATATA
1 ATAT-AAAAAAATAAT-TACATATATATA-A
*
43228901 TTATAAAAAAGATAATTACATATATATAA
1 ATATAAAAAA-ATAATTACATATATATAA
*
43228930 AAATAAATAATAATAATTACATATAT
1 ATATAAA-AA-AATAATTACATATAT
43228956 TGAAATTAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
29 6 0.12
30 34 0.71
31 8 0.17
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (28 bp):
ATATAAAAAAATAATTACATATATATAA
Found at i:43229115 original size:17 final size:17
Alignment explanation
Indices: 43229093--43229137 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
43229083 TAGGAAATAA
*
43229093 AAAATGTATATGTATAT
1 AAAATGTATATATATAT
*
43229110 AAAATGTAAATATATAT
1 AAAATGTATATATATAT
*
43229127 ATAA-GTATATA
1 AAAATGTATATA
43229138 AAAGTTATGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
AAAATGTATATATATAT
Found at i:43229659 original size:21 final size:20
Alignment explanation
Indices: 43229622--43229673 Score: 88
Period size: 21 Copynumber: 2.6 Consensus size: 20
43229612 AATCACATCT
43229622 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
43229641 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
43229662 TCTAAGATTGCA
1 TCTAAGATTGCA
43229674 CATCCTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 11 0.35
21 20 0.65
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:43231904 original size:43 final size:42
Alignment explanation
Indices: 43231857--43231941 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 42
43231847 ATTTTAATGC
*
43231857 ATATACATGTATATATATATTTACATACTTATTTTTTTAACTT
1 ATATACATGTATATATATATTTACATACAT-TTTTTTTAACTT
* **
43231900 ATATACATGTCTATATATATTTATTTACATTTTTTTTAACTT
1 ATATACATGTATATATATATTTACATACATTTTTTTTAACTT
43231942 TCATAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
42 12 0.32
43 26 0.68
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.55
Consensus pattern (42 bp):
ATATACATGTATATATATATTTACATACATTTTTTTTAACTT
Found at i:43233451 original size:69 final size:70
Alignment explanation
Indices: 43233369--43233543 Score: 198
Period size: 69 Copynumber: 2.5 Consensus size: 70
43233359 TTGAACAGGA
* * * **
43233369 AGAA-ACCAAGGTGAAAACCCAAAAAGGGCACCTTGACTCCTAAAAAA-AAGGAGAA-AAAGAAA
1 AGAAGACCAAGGTGAAAACCCACAAAGGGCACTTTGACT-CAAAAAAAGAAAAAGAAGAAA-AAA
43233431 -AAAAAG
64 GAAAAAG
* * *
43233437 AGAAGACCAAGGTGAAAACCTACAAAGGGCGCTTTGAGTCAAAAAAAGAAAAAGAAGAAAAAAGA
1 AGAAGACCAAGGTGAAAACCCACAAAGGGCACTTTGACTCAAAAAAAGAAAAAGAAGAAAAAAGA
43233502 AAAAG
66 AAAAG
* *
43233507 -GAGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTTGA
1 AGA-AGACCAAGGTGAAAACCCACAAAGGGCACTTTGA
43233544 GACCAAAGGG
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
68 11 0.12
69 40 0.44
70 39 0.43
ACGTcount: A:0.53, C:0.15, G:0.23, T:0.09
Consensus pattern (70 bp):
AGAAGACCAAGGTGAAAACCCACAAAGGGCACTTTGACTCAAAAAAAGAAAAAGAAGAAAAAAGA
AAAAG
Found at i:43235095 original size:89 final size:89
Alignment explanation
Indices: 43234934--43235100 Score: 221
Period size: 89 Copynumber: 1.9 Consensus size: 89
43234924 ATGGATTAAA
* * * *
43234934 GAAGATAGCATATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCGAAGACACCAACCTCACCTC
1 GAAGATAACAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCAAAAACACCAACCTCACCTC
43234999 CCTGAGTTTGCAGCGGAGCAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * * **
43235023 GAAGATAACAGATCTTGTCCTT-CTGTACTGGCAGTGAAGCAGATCAAAAACACCAGCCTTGCCT
1 GAAGATAACAGATCTTGT-CTTCCTGTACCGGCAGCGAAGCAGATCAAAAACACCAACCTCACCT
43235087 CTCC-GAGTTTGCAG
65 C-CCTGAGTTTGCAG
43235101 TAGAGTAGGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
89 62 0.93
90 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (89 bp):
GAAGATAACAGATCTTGTCTTCCTGTACCGGCAGCGAAGCAGATCAAAAACACCAACCTCACCTC
CCTGAGTTTGCAGCGGAGCAGACT
Found at i:43235382 original size:44 final size:44
Alignment explanation
Indices: 43235127--43235646 Score: 224
Period size: 44 Copynumber: 11.6 Consensus size: 44
43235117 TTGTGGATTC
* * *
43235127 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATCGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAGTCT
* * * * * ** *
43235172 TATTTCCCTGAAGTTGTAGTGGAACAAATTAAATCTACCATAACAGACT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C---A-AGTCT
* ** * * * *
43235221 CATCTTTCTGAAGTTGCAGTAGAGCAGA-T-CATAT-CAA-ACTT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTC-T
* * * * **
43235262 TATCTCTCTGAAGTTGCAATAGAGCAGGTTGAA-ATAGCAAACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAGTCT
*
43235306 TATC-CCCATGAAGTTGCAGTGGGGCA-AGTTGAAGATACAAGTCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGA-TTGAAGATACAAGTCT
* * * *
43235350 TATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGTTACTAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC-AAGTCT
* * *** * ** *
43235394 TACCTCCCTGAAGTTGTAGTGGAATGGATT-AAAATGA-TGGATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAG-TCT
* **
43235438 TATCTCCCTGAAGTTGCAGTGGAGTAGACAGAAGATAGCGAA-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AAGTCT
* * * *
43235483 TATTTCCCTGAAGTTGCGGTGGAACAGATTGAAGCTATAAGTTACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT-A--CA-AG-TCT
* * * *
43235534 TATCTCTCTGAAGTTGTAGTAGAGCAGGTTGAA-ATTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACAAGTCT
* * **
43235578 TATC-CCTCTGAAGTTGCAGTGGGGCA-AGTTAAAGATATGAGT-T
1 TATCTCC-CTGAAGTTGCAGTGGAGCAGA-TTGAAGATACAAGTCT
43235621 CTATCTCCCTGAAGTTGCAGTGGAGC
1 -TATCTCCCTGAAGTTGCAGTGGAGC
43235647 GGGTCAAAAT
Statistics
Matches: 357, Mismatches: 81, Indels: 75
0.70 0.16 0.15
Matches are distributed among these distances:
40 2 0.01
41 26 0.07
42 4 0.01
43 8 0.02
44 170 0.48
45 81 0.23
46 1 0.00
47 5 0.01
48 6 0.02
49 25 0.07
51 29 0.08
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAGTCT
Found at i:43235670 original size:44 final size:45
Alignment explanation
Indices: 43235304--43235691 Score: 128
Period size: 44 Copynumber: 8.6 Consensus size: 45
43235294 AATAGCAAAC
* ** **
43235304 CTTATC-CCCATGAAGTTGCAGTGGGGCAAGTTGAAGATACAAG-T
1 CTTATCTCCC-TGAAGTTGCAGTGGAGCAAGTCAAAGATATGAGAT
* * ** *
43235348 CTTATCTCCCTAAAGTTGTAGTGGAGC-AGATTGAAGTTACT-A-AT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TCAAAGATA-TGAGAT
* * * * *
43235392 CCTACCTCCCTGAAGTTGTAGTGGA--ATGGATTAAA-ATGATG-GAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA-AG-TCAAAGAT-ATGAGAT
* * * *
43235436 CCTATCTCCCTGAAGTTGCAGTGGAG-TAGACAGAAGATA-GCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTCA-AAGATATGAG-AT
* * * ** *
43235481 CTTATTTCCCTGAAGTTGCGGTGGAAC-AGATTGAAGCTATAAGTTACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TCAAAG--AT-A--T-GAGAT
* * * * * * **
43235532 CTTATCTCTCTGAAGTTGTAGTAGAGCAGGTTGAAA-TTACAAG-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TCAAAGATATGAGAT
* * *
43235576 CTTATC-CCTCTGAAGTTGCAGTGGGGCAAGTTAAAGATATGAGTT
1 CTTATCTCC-CTGAAGTTGCAGTGGAGCAAGTCAAAGATATGAGAT
**
43235621 C-TATCTCCCTGAAGTTGCAGTGGAGCGGGTCAAA-ATGATG-GAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTCAAAGAT-ATGAGAT
* *
43235664 CTTATCTCTCTGAAGTTGCAGTAGAGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA
43235692 GATCGCATCA
Statistics
Matches: 258, Mismatches: 56, Indels: 60
0.69 0.15 0.16
Matches are distributed among these distances:
43 16 0.06
44 169 0.66
45 40 0.16
47 2 0.01
48 2 0.01
49 1 0.00
51 23 0.09
52 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTCAAAGATATGAGAT
Found at i:43235805 original size:103 final size:103
Alignment explanation
Indices: 43235621--43235900 Score: 339
Period size: 103 Copynumber: 2.7 Consensus size: 103
43235611 GATATGAGTT
* * * * *
43235621 CTATCTCCCTGAAGTTGCAGTGGAGCGGGTCAAAATGATGGATCTTATCTCTCTGAAGTTGCAGT
1 CTATCTTCCTGAAGTTGCAGTGAAGCAGATCAAAATAATGGATCTTATCTCTCTGAAGTTGCAGT
* *
43235686 AGAGCAGATCGCATCAGACTTTATTGAAGTTACTAGTC
66 AGAGCAGATCGCATCAGACTTTATTGAAGCTACAAGTC
* * *
43235724 CTATCTTCCTGAAGTTGCAATGAAGCAGATTAAAATAATGGATCTTATCTCTCCGAAGTTGCAGT
1 CTATCTTCCTGAAGTTGCAGTGAAGCAGATCAAAATAATGGATCTTATCTCTCTGAAGTTGCAGT
* * *
43235789 AGAGTAGATTGTATCAGACTTTATTGAAGCTACAAGTC
66 AGAGCAGATCGCATCAGACTTTATTGAAGCTACAAGTC
* * * * * **
43235827 TTATC-TCACTGAGGTTGCAGTAGAA-TAGACTGAAGATAACAGATCTTATCTCTCTGAAGTTGC
1 CTATCTTC-CTGAAGTTGCAGT-GAAGCAGA-TCAAAATAATGGATCTTATCTCTCTGAAGTTGC
43235890 AGTAGAGCAGA
63 AGTAGAGCAGA
43235901 CCACGATGAG
Statistics
Matches: 151, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
102 2 0.01
103 108 0.72
104 41 0.27
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (103 bp):
CTATCTTCCTGAAGTTGCAGTGAAGCAGATCAAAATAATGGATCTTATCTCTCTGAAGTTGCAGT
AGAGCAGATCGCATCAGACTTTATTGAAGCTACAAGTC
Found at i:43236172 original size:44 final size:44
Alignment explanation
Indices: 43236065--43236402 Score: 216
Period size: 44 Copynumber: 7.6 Consensus size: 44
43236055 TCAAATCAAA
* * * * *
43236065 TCTTATCTCCCTGAAGTTACAGTGGAACAGACTGAAGATAGCAAA
1 TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATA-TAAG
* * ** **
43236110 CCTTATCTCCTTGAAGTTGTGGTGGAGCAGGTTGAAGATATAAG
1 TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATATAAG
* * *
43236154 TCTTATTTCCATGAAGTTGCAGTGGAGTAGACTGAAGATATGAG
1 TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATATAAG
* * * * * *
43236198 TCTTATCACCCTGAAGTTACAGAGGAGCAGACTGAAGCTACTGA-
1 TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATA-TAAG
* * * * * *
43236242 TCTTATCT-CACTAAAGTTGTAGTGGAGTAGACTGTAGATAACAAA
1 TCTTATCTCCA-TGAAGTTGCAGTGGAGCAGACTGAAGAT-ATAAG
* * * ** *
43236287 CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGATACCAA-
1 TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATA-TAAG
* ** * * * *
43236331 TCTTATCTCCCTGAAGTTATAGCGGAGCAAATTGAAGCTACTAA-
1 TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATA-TAAG
* * *
43236375 TCCTATCTCCCTAAAGTTGCAGTGGAGC
1 TCTTATCTCCATGAAGTTGCAGTGGAGC
43236403 GGATTAAAAT
Statistics
Matches: 227, Mismatches: 60, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
43 1 0.00
44 158 0.70
45 67 0.30
46 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCATGAAGTTGCAGTGGAGCAGACTGAAGATATAAG
Found at i:43236303 original size:133 final size:131
Alignment explanation
Indices: 43236063--43236402 Score: 356
Period size: 133 Copynumber: 2.6 Consensus size: 131
43236053 TATCAAATCA
* * * * * *
43236063 AATCTTATCTCCCTGAAGTTACAGTGGAACAGACTGAAGATAGCAAACCTTATCTCCTTGAAGTT
1 AATCTTATCTCCCTGAAGTTACAGAGGAGCAGACTGAAGCTA-CTAATCTTATCTCC-TAAAGTT
* ** * ** * **
43236128 GTGGTGGAGCAGGTTGAAGATATAAGTCTTATTTCCATGAAGTTGCAGTGGAGTAGACTGAAGAT
64 GTAGTGGAGCAGACTGAAGATACAAACCTTATCTCCATGAAGTTGCAGTGGAACAGACTGAAGAT
**
43236193 ATG
129 ACC
* * *
43236196 AGTCTTATCACCCTGAAGTTACAGAGGAGCAGACTGAAGCTACTGATCTTATCTCACTAAAGTTG
1 AATCTTATCTCCCTGAAGTTACAGAGGAGCAGACTGAAGCTACTAATCTTATCTC-CTAAAGTTG
* * * **
43236261 TAGTGGAGTAGACTGTAGATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGAT
65 TAGTGGAGCAGACTGAAGAT-ACAAACCTTATCTCCATGAAGTTGCAGTGGAACAGACTGAAGAT
43236326 ACC
129 ACC
* * * * *
43236329 AATCTTATCTCCCTGAAGTTATAGCGGAGCAAATTGAAGCTACTAATCCTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTACAGAGGAGCAGACTGAAGCTACTAATCTTATCT-CCTAAAGTTG
*
43236394 CAGTGGAGC
65 TAGTGGAGC
43236403 GGATTAAAAT
Statistics
Matches: 169, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
132 32 0.19
133 136 0.80
134 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (131 bp):
AATCTTATCTCCCTGAAGTTACAGAGGAGCAGACTGAAGCTACTAATCTTATCTCCTAAAGTTGT
AGTGGAGCAGACTGAAGATACAAACCTTATCTCCATGAAGTTGCAGTGGAACAGACTGAAGATAC
C
Found at i:43236658 original size:139 final size:139
Alignment explanation
Indices: 43236334--43236647 Score: 479
Period size: 139 Copynumber: 2.3 Consensus size: 139
43236324 ATACCAATCT
* * * * * * * *
43236334 TATCTCCCTGAAGTTATAGCGGAGCAAATTGAAGCT-ACTAATCC-TATCTCCCTAAAGTTGCAG
1 TATCTCCCTAAAGTTATAGTGGAGCAGACTGTAGATAAC-AAACCTTATGTCCCTAAAGTTGCAG
*
43236397 TGGAGCGGATTAAAATGTTGAATCCTATACCTCTGAAGTTACAGTAGGTTGGATTAAATCTACCA
65 TGGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTACAGTAGGTTGGATTAAATCTACCA
43236462 TAACGAGTCG
130 TAACGAGTCG
*
43236472 TATCTCCCTAAAGTTATAGTGGAGCAGACTGTAGATAACAAACCTTATGTCCCTGAAGTTGCAGT
1 TATCTCCCTAAAGTTATAGTGGAGCAGACTGTAGATAACAAACCTTATGTCCCTAAAGTTGCAGT
*
43236537 GGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTGCAGTAGGTTGGATTAAATCTACCAT
66 GGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTACAGTAGGTTGGATTAAATCTACCAT
*
43236602 AACGAGTCT
131 AACGAGTCG
* *
43236611 TATCTCCCTAAAGTTGTAGTGGAGCAGGCTGTAGATA
1 TATCTCCCTAAAGTTATAGTGGAGCAGACTGTAGATA
43236648 GCGGATCTTA
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
138 34 0.21
139 126 0.79
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (139 bp):
TATCTCCCTAAAGTTATAGTGGAGCAGACTGTAGATAACAAACCTTATGTCCCTAAAGTTGCAGT
GGAGCGGATTAAAATGATGAATCCTATACCTCTGAAGTTACAGTAGGTTGGATTAAATCTACCAT
AACGAGTCG
Found at i:43242109 original size:114 final size:113
Alignment explanation
Indices: 43241897--43242147 Score: 349
Period size: 114 Copynumber: 2.2 Consensus size: 113
43241887 CTGTATCAAT
** * * *
43241897 ACATTTATTTTTTGCTAAATTTTTTCAAACATTGAAGCTTAAATTGGTATCGGTACCAGGCAAGG
1 ACATTTATTTTTTGCTAAATTTTTTCAAACATCAAAGCTCAAATTGGTATCGATACCAGGAAAGG
* * * * *
43241962 GTGTCGATACTATGACCCTGGTATTAATGCTATGGCAAGGGTATCGAC
66 GTATCGATACTATGACCCTAGTATCAATACTATGGAAAGGGTATCGAC
* *
43242010 ACCTTTGTTCTTTTGCTAAATTTTTTCAAACATCAAAGCTCAAATTGGTATCGATACCAGGAAAG
1 ACATTTATT-TTTTGCTAAATTTTTTCAAACATCAAAGCTCAAATTGGTATCGATACCAGGAAAG
* * *
43242075 GGTATCGATACTTTGACCCTAGTATCAATACTATGGAAAGGGTATTGAT
65 GGTATCGATACTATGACCCTAGTATCAATACTATGGAAAGGGTATCGAC
*
43242124 ACATTTATTTTTTGCTAAAATTTT
1 ACATTTATTTTTTGCTAAATTTTT
43242148 CTAATATTGA
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
113 21 0.18
114 98 0.82
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (113 bp):
ACATTTATTTTTTGCTAAATTTTTTCAAACATCAAAGCTCAAATTGGTATCGATACCAGGAAAGG
GTATCGATACTATGACCCTAGTATCAATACTATGGAAAGGGTATCGAC
Found at i:43243992 original size:25 final size:25
Alignment explanation
Indices: 43243964--43244017 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
43243954 TGTAGTGGCA
*
43243964 AGGTGGCAACATAGGTGTGGCAAGG
1 AGGTGGCAACACAGGTGTGGCAAGG
* *
43243989 AGGTGGCATCACAGGTGTGGTAAGG
1 AGGTGGCAACACAGGTGTGGCAAGG
43244014 AGGT
1 AGGT
43244018 CAGAGGTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.44, T:0.19
Consensus pattern (25 bp):
AGGTGGCAACACAGGTGTGGCAAGG
Found at i:43244164 original size:24 final size:21
Alignment explanation
Indices: 43244131--43244177 Score: 58
Period size: 24 Copynumber: 2.1 Consensus size: 21
43244121 TCAAATGAGT
*
43244131 GATTTAAGGAGTGGATCATGGAG
1 GATTTAAGGAGAGGAT--TGGAG
43244154 GATTTCAAGGAGAGGATTGGAG
1 GATTT-AAGGAGAGGATTGGAG
43244176 GA
1 GA
43244178 GTGATTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 5 0.23
24 10 0.45
ACGTcount: A:0.32, C:0.04, G:0.40, T:0.23
Consensus pattern (21 bp):
GATTTAAGGAGAGGATTGGAG
Found at i:43245529 original size:27 final size:27
Alignment explanation
Indices: 43245485--43245615 Score: 133
Period size: 27 Copynumber: 4.9 Consensus size: 27
43245475 GACTATACCA
** *
43245485 AAATACCCTTGATGGGTAAAATTATCG
1 AAATACCCCCGATAGGTAAAATTATCG
43245512 AAATACCCCCGATAGGTAAAATTA-CTG
1 AAATACCCCCGATAGGTAAAATTATC-G
*** * *
43245539 AAATACCCTTAATAGGTAAAATTACCA
1 AAATACCCCCGATAGGTAAAATTATCG
*
43245566 AAATA-CCCCAAT-GTGTAAAATTATCG
1 AAATACCCCCGATAG-GTAAAATTATCG
*
43245592 AAATACCCCCGATGGGTAAAATTA
1 AAATACCCCCGATAGGTAAAATTA
43245616 ACTATTATGG
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 21 0.24
27 63 0.72
28 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
AAATACCCCCGATAGGTAAAATTATCG
Found at i:43245610 original size:53 final size:54
Alignment explanation
Indices: 43245485--43245615 Score: 160
Period size: 53 Copynumber: 2.4 Consensus size: 54
43245475 GACTATACCA
* * *
43245485 AAATACCCTTGATGGGTAAAATTATCGAAATACCCCCGATAGGTAAAATTACTG
1 AAATACCCTTGATGGGTAAAATTACCAAAATACCCCCAATAGGTAAAATTACTG
* *
43245539 AAATACCCTTAATAGGTAAAATTACCAAAATA-CCCCAAT-GTGTAAAATTA-TCG
1 AAATACCCTTGATGGGTAAAATTACCAAAATACCCCCAATAG-GTAAAATTACT-G
**
43245592 AAATACCCCCGATGGGTAAAATTA
1 AAATACCCTTGATGGGTAAAATTA
43245616 ACTATTATGG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
52 2 0.03
53 36 0.55
54 28 0.42
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (54 bp):
AAATACCCTTGATGGGTAAAATTACCAAAATACCCCCAATAGGTAAAATTACTG
Found at i:43248592 original size:22 final size:21
Alignment explanation
Indices: 43248576--43248669 Score: 80
Period size: 22 Copynumber: 4.3 Consensus size: 21
43248566 ACAAATTCAA
43248576 TATCAATTTCTTTCAAAATTTC
1 TATCAATTTCTTTC-AAATTTC
*
43248598 TCTCAATTTCTTTCAAAATTTC
1 TATCAATTTCTTTC-AAATTTC
* * *
43248620 TCTCAATTCCCTTCAAAATTTC
1 TATCAATTTCTTTC-AAATTTC
* * *
43248642 CATCAATTTCCTTCCAAAATTC
1 TATCAATTT-CTTTCAAATTTC
*
43248664 TCTCAA
1 TATCAA
43248670 ACTCTCAATT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
22 57 0.95
23 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.44
Consensus pattern (21 bp):
TATCAATTTCTTTCAAATTTC
Found at i:43248597 original size:12 final size:12
Alignment explanation
Indices: 43248580--43248625 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
43248570 ATTCAATATC
*
43248580 AATTTCTTTCAA
1 AATTTCTCTCAA
43248592 AATTTCTCTC--
1 AATTTCTCTCAA
*
43248602 AATTTCTTTCAA
1 AATTTCTCTCAA
43248614 AATTTCTCTCAA
1 AATTTCTCTCAA
43248626 TTCCCTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 9 0.31
12 20 0.69
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (12 bp):
AATTTCTCTCAA
Found at i:43248635 original size:44 final size:44
Alignment explanation
Indices: 43248578--43248669 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
43248568 AAATTCAATA
* * *
43248578 TCAATTTCTTTCAAAATTTCTC-TCAATTT-CTTTCAAAATTTCTC
1 TCAATTCCCTTCAAAATTTC-CATCAATTTCCTTCCAAAA-TTCTC
43248622 TCAATTCCCTTCAAAATTTCCATCAATTTCCTTCCAAAATTCTC
1 TCAATTCCCTTCAAAATTTCCATCAATTTCCTTCCAAAATTCTC
43248666 TCAA
1 TCAA
43248670 ACTCTCAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 34 0.79
45 8 0.19
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.43
Consensus pattern (44 bp):
TCAATTCCCTTCAAAATTTCCATCAATTTCCTTCCAAAATTCTC
Found at i:43248695 original size:21 final size:22
Alignment explanation
Indices: 43248671--43248711 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
43248661 TTCTCTCAAA
*
43248671 CTCTCAA-TTCCTTCCAAAATC
1 CTCTCAATTTCCTTCAAAAATC
43248692 CTCTCAATTTCCTTCAAAAA
1 CTCTCAATTTCCTTCAAAAA
43248712 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (22 bp):
CTCTCAATTTCCTTCAAAAATC
Found at i:43248705 original size:51 final size:50
Alignment explanation
Indices: 43248619--43248720 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 50
43248609 TTCAAAATTT
* *
43248619 CTCTCAATTCCCTTCAAAATTTCCATCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCAAAA-TTCCATCAATTTCCTTCAAAAAATCTC-CAAA
*
43248671 CTCTCAATT-CCTTCCAAAA-TCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTCAATTCCCTT-CAAAATTCC-ATCAATTTCCTTCAAAAAATCTCCAAA
43248721 TCCATATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
50 7 0.16
51 24 0.53
52 14 0.31
ACGTcount: A:0.32, C:0.33, G:0.00, T:0.34
Consensus pattern (50 bp):
CTCTCAATTCCCTTCAAAATTCCATCAATTTCCTTCAAAAAATCTCCAAA
Found at i:43248808 original size:29 final size:29
Alignment explanation
Indices: 43248753--43248808 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
43248743 ATTAAATTTC
43248753 ATTTTTTTAAGAAAATTTTAAAATTTTTT
1 ATTTTTTTAAGAAAATTTTAAAATTTTTT
*
43248782 ATTTTTTTAA-ATAATTTTAAAATTTTT
1 ATTTTTTTAAGAAAATTTTAAAATTTTT
43248809 AATATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTTTTAAGAAAATTTTAAAATTTTTT
Found at i:43248816 original size:29 final size:29
Alignment explanation
Indices: 43248753--43248816 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
43248743 ATTAAATTTC
*
43248753 ATTTTTTTAAGAAAATTTTAAAATTTTTT
1 ATTTTTTTAAGAAAATTTTAAAATTTTTA
*
43248782 ATTTTTTTAA-ATAATTTTAAAATTTTTA
1 ATTTTTTTAAGAAAATTTTAAAATTTTTA
*
43248810 ATATTTT
1 ATTTTTT
43248817 CAACAATGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTTTTTAAGAAAATTTTAAAATTTTTA
Found at i:43248961 original size:24 final size:23
Alignment explanation
Indices: 43248906--43248962 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 23
43248896 TAAATTTTAA
*
43248906 ATTTTTTTAAGATATTTTTATTT
1 ATTTTTTTAAGATATTTTTATAT
43248929 ATGTATTTTT-AGATATTTATTAATAT
1 AT-T-TTTTTAAGATATTT-TT-ATAT
43248955 ATTTTTTT
1 ATTTTTTT
43248963 TTATAAAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 2 0.07
24 14 0.48
25 8 0.28
26 5 0.17
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (23 bp):
ATTTTTTTAAGATATTTTTATAT
Found at i:43251114 original size:17 final size:18
Alignment explanation
Indices: 43251092--43251127 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
43251082 TAAAATCCCT
43251092 AAACCCT-ACTTAATTAA
1 AAACCCTAACTTAATTAA
*
43251109 AAACCCTAATTTAATTAA
1 AAACCCTAACTTAATTAA
43251127 A
1 A
43251128 TTAAAAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (18 bp):
AAACCCTAACTTAATTAA
Found at i:43251167 original size:23 final size:24
Alignment explanation
Indices: 43251080--43251164 Score: 111
Period size: 24 Copynumber: 3.6 Consensus size: 24
43251070 ACATTATTTG
*
43251080 ATTAAAATCCCTAAACCCTACTTA
1 ATTAAAAACCCTAAACCCTACTTA
** *
43251104 ATTAAAAACCCT-AA-TTTAATTAA
1 ATTAAAAACCCTAAACCCTACTT-A
43251127 ATTAAAAACCCTAAACCCTACTTA
1 ATTAAAAACCCTAAACCCTACTTA
43251151 ATTAAAAACCCTAA
1 ATTAAAAACCCTAA
43251165 CCCGAACCTA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
22 4 0.08
23 15 0.29
24 28 0.55
25 4 0.08
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (24 bp):
ATTAAAAACCCTAAACCCTACTTA
Found at i:43251176 original size:24 final size:24
Alignment explanation
Indices: 43251080--43251177 Score: 76
Period size: 24 Copynumber: 4.1 Consensus size: 24
43251070 ACATTATTTG
* * *
43251080 ATTAAAATCCCTAAACCCTACTTA
1 ATTAAAAACCCTAAACCCAACCTA
*** *
43251104 ATTAAAAACCCT-AATTTAA-TTAA
1 ATTAAAAACCCTAAACCCAACCT-A
* *
43251127 ATTAAAAACCCTAAACCCTACTTA
1 ATTAAAAACCCTAAACCCAACCTA
43251151 ATTAAAAACCCT-AACCCGAACCTA
1 ATTAAAAACCCTAAACCC-AACCTA
43251175 ATT
1 ATT
43251178 TAATTAAATT
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
22 2 0.03
23 21 0.36
24 34 0.58
25 2 0.03
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (24 bp):
ATTAAAAACCCTAAACCCAACCTA
Found at i:43251195 original size:28 final size:28
Alignment explanation
Indices: 43251113--43251668 Score: 363
Period size: 28 Copynumber: 20.5 Consensus size: 28
43251103 AATTAAAAAC
43251113 CCTAATTTAATTAAATTAAAAACCCTAAA
1 CCTAATTTAATTAAATTAAAAACCCT-AA
* * *
43251142 CCCT-ACTTAATTAAA--AACCCTAACCCGAA
1 -CCTAATTTAATTAAATTAA---AAACCCTAA
43251171 CCTAATTTAATTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
** *
43251199 CCTAACCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
* *
43251227 CCCTAACCTAACCTAATTAAAATAAAAACCCTAA
1 -CCTAA--T---TTAATTAAATTAAAAACCCTAA
43251261 CCTAA--T--TT-AATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
*
43251284 CC-----TACTTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
*
43251307 CCTTATTTAATTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
*
43251335 CC-----TACTTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
*
43251358 CCCCT-ACTTAATT-AATT-AAAACCCTAA
1 --CCTAATTTAATTAAATTAAAAACCCTAA
*
43251385 CCT--TCTTAATTAAA--AACCCTAACCCTAA
1 CCTAAT-TTAATTAAATTAA---AAACCCTAA
43251413 CCTAATTTAATTAAATT-AAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
** *
43251440 CCTAACCT-ATTTAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
*
43251467 CC-----TACTTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
**
43251490 CCTAACCTAATTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
* *
43251518 CCCTAACCTAACCTAATTTAATTAAAAACCCTAA
1 -CCTAA--T---TTAATTAAATTAAAAACCCTAA
43251552 CCTAA--T--TT-AATT-AAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
*
43251574 CCTTATTTAATTAAATTAAAAACCCTAAA
1 CCTAATTTAATTAAATTAAAAACCCT-AA
43251603 CCTAA--T--TT-AATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
**
43251626 CCTAACCTAATTAAATTAAAAACCCTAA
1 CCTAATTTAATTAAATTAAAAACCCTAA
43251654 CCCT-ATTTAATTAAA
1 -CCTAATTTAATTAAA
43251669 AACCCTAATG
Statistics
Matches: 433, Mismatches: 31, Indels: 126
0.73 0.05 0.21
Matches are distributed among these distances:
20 1 0.00
22 17 0.04
23 83 0.19
24 18 0.04
25 15 0.03
26 13 0.03
27 45 0.10
28 124 0.29
29 54 0.12
30 10 0.02
31 2 0.00
33 10 0.02
34 41 0.09
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (28 bp):
CCTAATTTAATTAAATTAAAAACCCTAA
Found at i:43251244 original size:62 final size:62
Alignment explanation
Indices: 43251120--43251285 Score: 215
Period size: 62 Copynumber: 2.8 Consensus size: 62
43251110 AACCCTAATT
* * **
43251120 TAATTAAATTAAAAACCCTAA---ACCCT-ACTTAATTAAAAACCCTAACCCGAACCTAATT
1 TAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCGAACCTAACC
*
43251178 TAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAACC
1 TAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCGAACCTAACC
*
43251240 TAATTAAAATAAAAA--C---CCTAACCTAATTTAATTAAAAACCCTAACC
1 TAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACC
43251286 TACTTAAATT
Statistics
Matches: 98, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
57 30 0.31
58 21 0.21
60 1 0.01
61 4 0.04
62 42 0.43
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.26
Consensus pattern (62 bp):
TAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCGAACCTAACC
Found at i:43251485 original size:23 final size:23
Alignment explanation
Indices: 43251233--43251519 Score: 227
Period size: 23 Copynumber: 11.3 Consensus size: 23
43251223 CTAACCCTAA
* *
43251233 CCTAACCTAATTAAAATAAAAAC
1 CCTAACCTACTTAAATTAAAAAC
* *
43251256 CCTAACCTAATTTAATTAAAAAC
1 CCTAACCTACTTAAATTAAAAAC
43251279 CCTAACCTACTTAAATTAAAAAC
1 CCTAACCTACTTAAATTAAAAAC
*
43251302 CCTAACCTTATTTAATTAAATTAAAAAC
1 CCTAACC-----TACTTAAATTAAAAAC
43251330 CCTAACCTACTTAAATTAAAAAC
1 CCTAACCTACTTAAATTAAAAAC
43251353 CCTAACCCCTACTT-AATTAATTAAAAC
1 CCTAA--CCTACTTAAATT-A--AAAAC
*
43251380 CCTAACCTTCTT-AATTAAAAAC
1 CCTAACCTACTTAAATTAAAAAC
*
43251402 CCTAACCCTAACCTAATTTAATTAAATTAAAAC
1 CCTAA-CCT-A-C---TTAAATTAAA----AAC
*
43251435 CCTAACCTAACCTATTTAATTAAAAAC
1 CCTAACCT-A-C--TTAAATTAAAAAC
43251462 CCTAACCTACTTAAATTAAAAAC
1 CCTAACCTACTTAAATTAAAAAC
43251485 CCTAACCTAACCTAATTAAATTAAAAAC
1 CCTAACCT-A-C---TTAAATTAAAAAC
43251513 CCTAACC
1 CCTAACC
43251520 CTAACCTAAC
Statistics
Matches: 228, Mismatches: 10, Indels: 47
0.80 0.04 0.16
Matches are distributed among these distances:
22 10 0.04
23 92 0.40
24 6 0.03
25 21 0.09
26 1 0.00
27 21 0.09
28 44 0.19
29 7 0.03
31 11 0.05
32 7 0.03
33 8 0.04
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.28
Consensus pattern (23 bp):
CCTAACCTACTTAAATTAAAAAC
Found at i:43251554 original size:23 final size:23
Alignment explanation
Indices: 43251524--43251676 Score: 175
Period size: 23 Copynumber: 6.2 Consensus size: 23
43251514 CTAACCCTAA
43251524 CCTAACCTAATTTAATTAAAAAC
1 CCTAACCTAATTTAATTAAAAAC
43251547 CCTAACCTAATTTAATT-AAAAC
1 CCTAACCTAATTTAATTAAAAAC
*
43251569 CCTAACCTTATTTAATTAAATTAAAAAC
1 CCTAACC-----TAATTTAATTAAAAAC
43251597 CCTAAACCTAATTTAATTAAAAAC
1 CCT-AACCTAATTTAATTAAAAAC
43251621 CCTAACCTAACCTAATTAAATTAAAAAC
1 CCTAACCTAA--T--TT-AATTAAAAAC
43251649 CCTAACCCT-ATTTAATTAAAAAC
1 CCTAA-CCTAATTTAATTAAAAAC
43251672 CCTAA
1 CCTAA
43251677 TGAAATTGTA
Statistics
Matches: 115, Mismatches: 2, Indels: 26
0.80 0.01 0.18
Matches are distributed among these distances:
22 12 0.10
23 39 0.34
24 20 0.17
25 1 0.01
26 1 0.01
27 11 0.10
28 24 0.21
29 7 0.06
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (23 bp):
CCTAACCTAATTTAATTAAAAAC
Found at i:43255064 original size:123 final size:123
Alignment explanation
Indices: 43254845--43255122 Score: 341
Period size: 123 Copynumber: 2.3 Consensus size: 123
43254835 CCACGAGGGC
* *
43254845 GCGATTTGACACTGTTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
1 GCGATTTGACACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
* * * **
43254910 AATCGCGTCCACGAACGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 AATCGCGTCCACGAACGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
* *
43254968 GCGATTTTATACTATTTCCTCAGAAAACGTC-AAAAAAATTATTT-CTCACATGACC-ACTGTAG
1 GCGATTTGACACTATTTCCTCAG-AAACGTCAAAAAAAATTATTTCCT-ACATGACCAACTGTAG
* * *
43255030 CGAAATCGCGTCCACG-AGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAA
64 CG-AATCGCGTCCACGAACG-CACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
** *
43255091 GCGATTTCCCACTATTTAAC-CAGAAACGTCAA
1 GCGATTTGACACTATTT-CCTCAGAAACGTCAA
43255123 CTCAAAAAAA
Statistics
Matches: 133, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
122 20 0.15
123 105 0.79
124 8 0.06
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (123 bp):
GCGATTTGACACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
AATCGCGTCCACGAACGCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
Found at i:43262585 original size:19 final size:19
Alignment explanation
Indices: 43262558--43262612 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
43262548 CTCGTTAATG
* *
43262558 GTGTTTGATTAGTGGAACT
1 GTGTCTGATTAGTGGAACC
43262577 GTGTCTGATTAGTGGAACC
1 GTGTCTGATTAGTGGAACC
43262596 GTGTGC-GATTAGTGGAA
1 GTGT-CTGATTAGTGGAA
43262613 TCATGTCTGC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 32 0.97
20 1 0.03
ACGTcount: A:0.22, C:0.09, G:0.35, T:0.35
Consensus pattern (19 bp):
GTGTCTGATTAGTGGAACC
Found at i:43264777 original size:16 final size:17
Alignment explanation
Indices: 43264751--43264782 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
43264741 AATTGTAATC
43264751 ATTATAATGTTTATTAA
1 ATTATAATGTTTATTAA
43264768 ATTA-AATGTTTATTA
1 ATTATAATGTTTATTA
43264783 TGTTGTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTATAATGTTTATTAA
Found at i:43266790 original size:12 final size:12
Alignment explanation
Indices: 43266773--43266802 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
43266763 TTAGATTGTT
43266773 ACACGGCCTAGC
1 ACACGGCCTAGC
43266785 ACACGGCCTAGC
1 ACACGGCCTAGC
43266797 ACACGG
1 ACACGG
43266803 ACGTGTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.40, G:0.27, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:43276694 original size:22 final size:22
Alignment explanation
Indices: 43276669--43276724 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
43276659 ACACCACTGA
43276669 ACAACCACC-ATATCACCACCAT
1 ACAACCACCTA-ATCACCACCAT
43276691 ACAACCACCTAATCACCACCAT
1 ACAACCACCTAATCACCACCAT
*
43276713 TCAACCATCCTA
1 ACAACCA-CCTA
43276725 GCACCACTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
22 26 0.84
23 5 0.16
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.16
Consensus pattern (22 bp):
ACAACCACCTAATCACCACCAT
Found at i:43276719 original size:11 final size:11
Alignment explanation
Indices: 43276670--43276719 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
43276660 CACCACTGAA
43276670 CAACCACCATAT
1 CAACCACCAT-T
*
43276682 C-ACCACCATA
1 CAACCACCATT
*
43276692 CAACCACCTAAT
1 CAACCACC-ATT
43276704 C-ACCACCATT
1 CAACCACCATT
43276714 CAACCA
1 CAACCA
43276720 TCCTAGCACC
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
10 4 0.13
11 24 0.77
12 3 0.10
ACGTcount: A:0.40, C:0.46, G:0.00, T:0.14
Consensus pattern (11 bp):
CAACCACCATT
Found at i:43276729 original size:22 final size:22
Alignment explanation
Indices: 43276669--43276731 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
43276659 ACACCACTGA
*
43276669 ACAACCACC-ATATCACCACCAT
1 ACAACCACCTA-AGCACCACCAT
*
43276691 ACAACCACCTAATCACCACCAT
1 ACAACCACCTAAGCACCACCAT
*
43276713 TCAACCATCCT-AGCACCAC
1 ACAACCA-CCTAAGCACCAC
43276732 TACACCACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
22 33 0.89
23 4 0.11
ACGTcount: A:0.38, C:0.46, G:0.02, T:0.14
Consensus pattern (22 bp):
ACAACCACCTAAGCACCACCAT
Found at i:43286110 original size:47 final size:47
Alignment explanation
Indices: 43286032--43286703 Score: 1046
Period size: 47 Copynumber: 14.3 Consensus size: 47
43286022 CCCTTCGGGA
* * * * * *
43286032 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43286079 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
43286126 CTTATTGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43286173 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43286220 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
43286267 CTTATCACATATATACACTTTCACATTCATCACATCGGGTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43286314 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43286359 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
43286408 CTTATCACATATATACACTTTCACATTCTTCACATAGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43286455 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43286500 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43286549 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43286596 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43286645 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43286692 CTTATCACATAT
1 CTTATCACATAT
43286704 TCACTACGAG
Statistics
Matches: 578, Mismatches: 37, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
45 85 0.15
47 362 0.63
49 131 0.23
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:43287980 original size:13 final size:13
Alignment explanation
Indices: 43287962--43287986 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43287952 TACTAAATTT
43287962 TCATGGATTCAAA
1 TCATGGATTCAAA
43287975 TCATGGATTCAA
1 TCATGGATTCAA
43287987 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:43299845 original size:13 final size:14
Alignment explanation
Indices: 43299812--43299842 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
43299802 GAGCACGCAT
43299812 AAAACATAACTTTA
1 AAAACATAACTTTA
*
43299826 AAAACATAACTTGA
1 AAAACATAACTTTA
43299840 AAA
1 AAA
43299843 CATCTCAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.03, T:0.23
Consensus pattern (14 bp):
AAAACATAACTTTA
Found at i:43310627 original size:27 final size:29
Alignment explanation
Indices: 43310582--43310642 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
43310572 ATTTTTGTCG
*
43310582 AATTTTATACTTTTATTAT-AAAACAATT
1 AATTTTATACTTTTATTATGAAAAAAATT
43310610 AATTTTA-AC-TTTATTTATGAAAAAAATT
1 AATTTTATACTTTTA-TTATGAAAAAAATT
43310638 AATTT
1 AATTT
43310643 ATTTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.13
27 6 0.20
28 20 0.67
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (29 bp):
AATTTTATACTTTTATTATGAAAAAAATT
Found at i:43331016 original size:21 final size:22
Alignment explanation
Indices: 43330992--43331032 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
43330982 TTTACAAATA
43330992 ATTTTAAATAAATA-AATTTAC
1 ATTTTAAATAAATAGAATTTAC
* *
43331013 ATTTTAGATGAATAGAATTT
1 ATTTTAAATAAATAGAATTT
43331033 TAATTTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (22 bp):
ATTTTAAATAAATAGAATTTAC
Found at i:43331038 original size:22 final size:20
Alignment explanation
Indices: 43330990--43331039 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
43330980 TTTTTACAAA
43330990 TAATTTTAAATAAATAAATT
1 TAATTTTAAATAAATAAATT
* *
43331010 TACATTTTAGATGAATAGAATTT
1 TA-ATTTTAAATAAATA-AA-TT
43331033 TAATTTT
1 TAATTTT
43331040 GAATTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 12 0.48
22 7 0.28
23 4 0.16
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (20 bp):
TAATTTTAAATAAATAAATT
Found at i:43331890 original size:31 final size:31
Alignment explanation
Indices: 43331855--43331928 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 31
43331845 ATGATTAAAT
*
43331855 CACAATTAAAGTTTCATGTATACATTTGAAC
1 CACAATTAAAGTTTCATGTATACAATTGAAC
* * * *
43331886 CACAATCAAAG-TTCATGTGTATAATTGCAC
1 CACAATTAAAGTTTCATGTATACAATTGAAC
43331916 CA-AATTAAAGTTT
1 CACAATTAAAGTTT
43331929 GTGTATCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 7 0.19
30 19 0.53
31 10 0.28
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (31 bp):
CACAATTAAAGTTTCATGTATACAATTGAAC
Found at i:43338814 original size:42 final size:42
Alignment explanation
Indices: 43338755--43338839 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
43338745 AATCAGGTGT
*
43338755 GTGATCACACCCTCTCATCTGCAAATCGGCAAAAGCTGAAAA
1 GTGATCACACCCTCTCATCTGCAAATCGGCAAAAGCCGAAAA
43338797 GTGATCACACCCTCTCATCTGCAAATCGGCAAAAGCCGAAAA
1 GTGATCACACCCTCTCATCTGCAAATCGGCAAAAGCCGAAAA
43338839 G
1 G
43338840 CCGAAAAAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (42 bp):
GTGATCACACCCTCTCATCTGCAAATCGGCAAAAGCCGAAAA
Found at i:43339050 original size:25 final size:27
Alignment explanation
Indices: 43338970--43339459 Score: 444
Period size: 27 Copynumber: 18.2 Consensus size: 27
43338960 AATGGGCCAC
* *
43338970 AAATTACCGAAATA-CCTCTATAGGGTA
1 AAATTATCGAAATACCCTCGA-AGGGTA
*
43338997 AAATTACCGAAATACCCTCGAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* * *
43339024 AAATTAT-TAAA-ACTCTTGAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
43339049 AAATTATCGAAATACCCTCGAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
*
43339076 AAATTA-CAGAAATACCC-CTATAGGGTA
1 AAATTATC-GAAATACCCTCGA-AGGGTA
* * * *
43339103 AAATTACCAAAATACCCACAAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* * *
43339130 AAATTAACAAAATACCC-CTAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* *
43339156 AAATTACCGAAGTACCCTCGAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* * * *
43339183 AAATTATGGAAATACCATTGATGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* * *
43339210 AAATTA-CTGAAATACCCCCAAAGCGTA
1 AAATTATC-GAAATACCCTCGAAGGGTA
* *
43339237 AAATTATCAAAATACCCTCAAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* *
43339264 AAATTACCGAAATACCCTTGAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* * * *
43339291 AAATTACCAAAATACCC-CTATAGAGTA
1 AAATTATCGAAATACCCTCGA-AGGGTA
*
43339318 AAATTATCGAAATACCCTCAAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
* *
43339345 AAATTATCGAAATACCAAT-AAAGGGTA
1 AAATTATCGAAATACC-CTCGAAGGGTA
* *
43339372 AAATTA-CTGAAATACCCCCGAAAGGGTT
1 AAATTATC-GAAATACCCTCG-AAGGGTA
** * * *
43339400 AAAGGACCAAAATACCCCCGAAGGGTA
1 AAATTATCGAAATACCCTCGAAGGGTA
*
43339427 AAATGATCGAAATACCC-CTGAAGGGTA
1 AAATTATCGAAATACCCTC-GAAGGGTA
43339454 AAATTA
1 AAATTA
43339460 CCATTATACC
Statistics
Matches: 387, Mismatches: 58, Indels: 36
0.80 0.12 0.07
Matches are distributed among these distances:
25 19 0.05
26 34 0.09
27 300 0.78
28 33 0.09
29 1 0.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGAAGGGTA
Found at i:43339680 original size:26 final size:26
Alignment explanation
Indices: 43339651--43339753 Score: 170
Period size: 26 Copynumber: 4.0 Consensus size: 26
43339641 ATGCCACATA
*
43339651 TACTCTTACTGGCAGCTTTGTTGCGT
1 TACTATTACTGGCAGCTTTGTTGCGT
43339677 TACTATTACTGGCAGCTTTGTTGCGT
1 TACTATTACTGGCAGCTTTGTTGCGT
* *
43339703 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTATTACTGGCAGCTTTGTTGCGT
*
43339729 TACTATTACTGGAAGCTTTGTTGCG
1 TACTATTACTGGCAGCTTTGTTGCG
43339754 ATATTGGTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGTTGCGT
Found at i:43339913 original size:28 final size:28
Alignment explanation
Indices: 43339864--43340001 Score: 161
Period size: 28 Copynumber: 5.0 Consensus size: 28
43339854 ATTGTACTGT
43339864 TTACTGTAATGGGCTAAGGCCCACACTA
1 TTACTGTAATGGGCTAAGGCCCACACTA
* * * * * *
43339892 TTTCTATATTGGGCTAAGGCCCATATTG
1 TTACTGTAATGGGCTAAGGCCCACACTA
*
43339920 TTAGTGTAATGGGCTAAGGCCCACACTA
1 TTACTGTAATGGGCTAAGGCCCACACTA
* ** *
43339948 TTTCTGTGTTGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTA
*
43339976 TTACTGTAATGGGCTATGG-CCACACT
1 TTACTGTAATGGGCTAAGGCCCACACT
43340002 GTACTGATAC
Statistics
Matches: 88, Mismatches: 22, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
27 7 0.08
28 81 0.92
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (28 bp):
TTACTGTAATGGGCTAAGGCCCACACTA
Found at i:43339960 original size:56 final size:56
Alignment explanation
Indices: 43339859--43340001 Score: 216
Period size: 56 Copynumber: 2.6 Consensus size: 56
43339849 ACTGCATTGT
*
43339859 ACTGTTTACTGTAATGGGCTAAGGCCCACACTATTTCTATATTGGGCTAAGGCCCAT
1 ACTG-TTACTGTAATGGGCTAAGGCCCACACTATTTCTATATTGGGCTAAGGCCCAC
* * * *
43339916 ATTGTTAGTGTAATGGGCTAAGGCCCACACTATTTCTGTGTTGGGCTAAGGCCCAC
1 ACTGTTACTGTAATGGGCTAAGGCCCACACTATTTCTATATTGGGCTAAGGCCCAC
*
43339972 ACTGTTACTGTAATGGGCTATGG-CCACACT
1 ACTGTTACTGTAATGGGCTAAGGCCCACACT
43340002 GTACTGATAC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
55 7 0.09
56 68 0.87
57 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (56 bp):
ACTGTTACTGTAATGGGCTAAGGCCCACACTATTTCTATATTGGGCTAAGGCCCAC
Found at i:43343694 original size:19 final size:18
Alignment explanation
Indices: 43343670--43343712 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
43343660 ACGAAATTAT
*
43343670 AAAAAAAGGGTGAATTGA
1 AAAAAAAGCGTGAATTGA
* *
43343688 AAAAAAATCGTGAATTTA
1 AAAAAAAGCGTGAATTGA
43343706 AAAAAAA
1 AAAAAAA
43343713 AGTGTTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.63, C:0.02, G:0.16, T:0.19
Consensus pattern (18 bp):
AAAAAAAGCGTGAATTGA
Found at i:43343708 original size:17 final size:18
Alignment explanation
Indices: 43343664--43343711 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
43343654 ATACATACGA
*
43343664 AATTATAAAAAAAGGGTG
1 AATTATAAAAAAAGCGTG
*
43343682 AATTGA-AAAAAAATCGTG
1 AATT-ATAAAAAAAGCGTG
43343700 AATT-TAAAAAAA
1 AATTATAAAAAAA
43343712 AAGTGTTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.27
18 18 0.69
19 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.15, T:0.23
Consensus pattern (18 bp):
AATTATAAAAAAAGCGTG
Found at i:43345918 original size:15 final size:15
Alignment explanation
Indices: 43345874--43345920 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
43345864 ATACTTGAAA
43345874 AAAGAGAGTGAAAAA-
1 AAAGAGA-TGAAAAAG
43345889 AAA-AG-TGAGAAAAG
1 AAAGAGATGA-AAAAG
43345903 AAAGAGATGAAAAAG
1 AAAGAGATGAAAAAG
43345918 AAA
1 AAA
43345921 AAGCGAGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 3 0.11
13 4 0.14
14 5 0.18
15 13 0.46
16 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (15 bp):
AAAGAGATGAAAAAG
Found at i:43350217 original size:24 final size:25
Alignment explanation
Indices: 43350188--43350247 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 25
43350178 TGGTCTATTA
** *
43350188 CGTACCAAAATTTCCA-TACCATTT
1 CGTACCAAAATCCCCATTACCATAT
43350212 CGTACCAAAA-CCCCATTACCATAT
1 CGTACCAAAATCCCCATTACCATAT
43350236 CGTACCAAAATC
1 CGTACCAAAATC
43350248 AACACTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.10
24 27 0.87
25 1 0.03
ACGTcount: A:0.37, C:0.33, G:0.05, T:0.25
Consensus pattern (25 bp):
CGTACCAAAATCCCCATTACCATAT
Found at i:43362972 original size:47 final size:47
Alignment explanation
Indices: 43362865--43363387 Score: 823
Period size: 47 Copynumber: 11.1 Consensus size: 47
43362855 GAAATGATAG
43362865 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
43362914 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43362961 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43363008 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43363055 TAAGGCCTAATAGCCGATGTAATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43363102 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43363149 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* **
43363196 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGCAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43363243 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43363290 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
43363337 -CGGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43363384 TAAG
1 TAAG
43363388 TCCCGAAGGG
Statistics
Matches: 443, Mismatches: 29, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
46 4 0.01
47 402 0.91
48 1 0.00
49 36 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:43363562 original size:37 final size:37
Alignment explanation
Indices: 43363509--43363584 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
43363499 AGCTCTAAAT
* * *
43363509 ACCCGATGACTACGTGTGG-GAATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAG-ATTATATCCGGGTAAG
*
43363546 ACCCGATAACTTCGTGTGGAGATTATATCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATATCCGGGTAAG
43363583 AC
1 AC
43363585 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 33 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGGAGATTATATCCGGGTAAG
Found at i:43365790 original size:30 final size:30
Alignment explanation
Indices: 43365744--43365867 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
43365734 TTTTATTATG
*
43365744 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
43365775 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
43365805 CCAATATTTGATACCCATATCTTTAACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * * *
43365835 CTATTATTTGATACCTATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
43365865 CCA
1 CCA
43365868 TAAATATGGA
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 78 0.92
31 7 0.08
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:43365799 original size:15 final size:15
Alignment explanation
Indices: 43365754--43365828 Score: 64
Period size: 15 Copynumber: 5.0 Consensus size: 15
43365744 CCAATATCTC
43365754 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
43365769 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
43365784 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
43365799 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
43365814 GATACCCATATCTTT
1 GATACCCATATCTTT
43365829 AACTTTCTAT
Statistics
Matches: 44, Mismatches: 12, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
14 8 0.18
15 28 0.64
16 8 0.18
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.43
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:43370481 original size:30 final size:30
Alignment explanation
Indices: 43370435--43370558 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
43370425 TTTTATTATG
*
43370435 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
43370466 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
43370496 CTAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
43370526 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
43370556 CCA
1 CCA
43370559 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:43370490 original size:15 final size:15
Alignment explanation
Indices: 43370445--43370552 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
43370435 CCAATATCTC
43370445 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
43370460 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
43370475 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
43370490 GACTTTCTA-ATATTT
1 GA-TACCCATATCTTT
43370505 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
43370520 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
43370535 GATACCCATATCTTT
1 GATACCCATATCTTT
43370550 GAT
1 GAT
43370553 TTTCCATAAA
Statistics
Matches: 65, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 43 0.66
16 11 0.17
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:43370782 original size:43 final size:43
Alignment explanation
Indices: 43370734--43370879 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
43370724 TTGGTTTTCA
43370734 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
43370777 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
* *
43370820 GCACTATGTGTGCGGGCAATAAGTGTTCATGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
43370863 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
43370880 TTGAAATGCA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.22, C:0.14, G:0.36, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:43370896 original size:29 final size:29
Alignment explanation
Indices: 43370861--43370934 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
43370851 GTTGTGAGAT
* *
43370861 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
43370890 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
43370919 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
43370935 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:43371372 original size:40 final size:40
Alignment explanation
Indices: 43371245--43371440 Score: 175
Period size: 40 Copynumber: 4.9 Consensus size: 40
43371235 TCGAATGATG
** *
43371245 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
43371285 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
43371325 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
43371365 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
43371405 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
43371441 CGTGTATTCG
Statistics
Matches: 128, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 108 0.84
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:43371381 original size:80 final size:81
Alignment explanation
Indices: 43371245--43371441 Score: 213
Period size: 80 Copynumber: 2.5 Consensus size: 81
43371235 TCGAATGATG
**
43371245 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
43371307 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
* ** * *
43371325 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
43371389 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
43371405 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
43371442 GTGTATTCGG
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
80 71 0.73
81 20 0.21
82 6 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:43374780 original size:47 final size:47
Alignment explanation
Indices: 43374673--43375338 Score: 1071
Period size: 47 Copynumber: 14.1 Consensus size: 47
43374663 GAAATGATAG
43374673 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
43374722 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43374769 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
43374816 TAAGGCTTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
43374863 TAAGGCCTAATCGCCGATGTAATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43374910 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43374957 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
43375006 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43375053 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
43375100 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
**
43375147 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43375194 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43375241 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
43375288 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
43375335 TAAG
1 TAAG
43375339 TCTCGAAGGG
Statistics
Matches: 583, Mismatches: 32, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 500 0.86
49 83 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:43375183 original size:284 final size:284
Alignment explanation
Indices: 43374673--43375283 Score: 1123
Period size: 284 Copynumber: 2.2 Consensus size: 284
43374663 GAAATGATAG
43374673 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
43374738 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAACGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
* * *
43374803 TGTATATGTGTGATAAGGCTTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
131 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
**
43374868 CCTAATCGCCGATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTAAT
196 CCTAATCGCCGATGTAATGAATGTGAAAGTGTATATATGCAATAAGGCCTAATGGCCGATGTAAT
43374933 GAATGTGAAAGTGTATATATGTGA
261 GAATGTGAAAGTGTATATATGTGA
*
43374957 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
43375022 ATGTGATGAACGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAACGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
43375087 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
131 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * *
43375152 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGCAATAAGGCCTAATGGCCGATGTGAT
196 CCTAATCGCCGATGTAATGAATGTGAAAGTGTATATATGCAATAAGGCCTAATGGCCGATGTAAT
43375217 GAATGTGAAAGTGTATATATGTGA
261 GAATGTGAAAGTGTATATATGTGA
43375241 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
43375284 GTGACGGGGC
Statistics
Matches: 315, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
284 315 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (284 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAACGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATCGCCGATGTAATGAATGTGAAAGTGTATATATGCAATAAGGCCTAATGGCCGATGTAAT
GAATGTGAAAGTGTATATATGTGA
Found at i:43375513 original size:37 final size:37
Alignment explanation
Indices: 43375457--43375535 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
43375447 CCGAGCTCTA
* *
43375457 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCAGGT
* *
43375494 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
43375531 AAGAC
1 AAGAC
43375536 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:43383111 original size:236 final size:236
Alignment explanation
Indices: 43382698--43383174 Score: 909
Period size: 236 Copynumber: 2.0 Consensus size: 236
43382688 TAAGCCCATC
*
43382698 TCAATATCATAATCAATATATGGAATGCATAAATACCCATACCAACCCTGCACTCCATCTCCTGT
1 TCAATATCATAATCAATATATGGAATGCATAAATACCCATACCAACCCTGCACTCCATCTCCTAT
*
43382763 CCAGCCCTACACTCTTGTGGGGATTAAATCGACCCACCCATCCCTACACTTCTTATGTAGCACCG
66 CCAGCCCTACACTCTTGTGGGGATTAAATCGACCCACCCATCCCTACACTCCTTATGTAGCACCG
*
43382828 ATTGCGGCACTAACCAATATTGCAGTAGAGCTGTTAATCACATAATTGACTAAAAGCCATTGGTG
131 ATTGCGGCACTAACCAATATTGCAGTAGAGCTGTCAATCACATAATTGACTAAAAGCCATTGGTG
43382893 GGTCCACAGTCGTCTCATGCAACTCGTGCGAAACTCACATA
196 GGTCCACAGTCGTCTCATGCAACTCGTGCGAAACTCACATA
43382934 TCAATATCATAATCAATATATGGAATGCATAAATACCCATACCAACCCTGCACTCCATCTCCTAT
1 TCAATATCATAATCAATATATGGAATGCATAAATACCCATACCAACCCTGCACTCCATCTCCTAT
43382999 CCAGCCCTACACTCTTGTGGGGATTAAATCGACCCACCCATCCCTACACTCCTTATGTAGCACCG
66 CCAGCCCTACACTCTTGTGGGGATTAAATCGACCCACCCATCCCTACACTCCTTATGTAGCACCG
43383064 ATTGCGGCACTAACCAATATTGCAGTAGAGCTGTCAATCACATAATTGACTAAAAGCCATTGGTG
131 ATTGCGGCACTAACCAATATTGCAGTAGAGCTGTCAATCACATAATTGACTAAAAGCCATTGGTG
* *
43383129 GGTCCACAGTCGTCTTATGCAACTCGTGCGAACCTCACATA
196 GGTCCACAGTCGTCTCATGCAACTCGTGCGAAACTCACATA
43383170 TCAAT
1 TCAAT
43383175 CACTTCCTCC
Statistics
Matches: 236, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
236 236 1.00
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (236 bp):
TCAATATCATAATCAATATATGGAATGCATAAATACCCATACCAACCCTGCACTCCATCTCCTAT
CCAGCCCTACACTCTTGTGGGGATTAAATCGACCCACCCATCCCTACACTCCTTATGTAGCACCG
ATTGCGGCACTAACCAATATTGCAGTAGAGCTGTCAATCACATAATTGACTAAAAGCCATTGGTG
GGTCCACAGTCGTCTCATGCAACTCGTGCGAAACTCACATA
Found at i:43383322 original size:27 final size:27
Alignment explanation
Indices: 43383292--43383358 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
43383282 GCATATGTCC
* *
43383292 ATAACAGTCATTTCATCTCCTAGGGGT
1 ATAACAGTCATTTCACCTCATAGGGGT
* * *
43383319 ATAACAATCATTTTACCTTATAGGGGT
1 ATAACAGTCATTTCACCTCATAGGGGT
**
43383346 ATTTCAGTCATTT
1 ATAACAGTCATTT
43383359 TACTCTTCGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (27 bp):
ATAACAGTCATTTCACCTCATAGGGGT
Found at i:43383359 original size:27 final size:27
Alignment explanation
Indices: 43383312--43383389 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
43383302 TTTCATCTCC
** *
43383312 TAGGGGTATAACAATCATTTTACCTTA
1 TAGGGGTATTTCAGTCATTTTACCTTA
*
43383339 TAGGGGTATTTCAGTCATTTTACTCTTC
1 TAGGGGTATTTCAGTCATTTTAC-CTTA
* *
43383367 GA-GGGTATTTCGGTCATTTTACC
1 TAGGGGTATTTCAGTCATTTTACC
43383390 CTTCGAGGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 39 0.89
28 4 0.09
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTACCTTA
Found at i:43383393 original size:27 final size:27
Alignment explanation
Indices: 43383342--43383403 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
43383332 TACCTTATAG
*
43383342 GGGTATTTCAGTCATTTTACTCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
*
43383369 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTCGA
43383396 GGGTATTT
1 GGGTATTT
43383404 TGATAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.44
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTTCGA
Found at i:43383412 original size:27 final size:27
Alignment explanation
Indices: 43383342--43383415 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
43383332 TACCTTATAG
* *
43383342 GGGTATTTC-AGTCATTTTACTCTTCGA
1 GGGTATTTCGA-TAATTTTACCCTTCGA
* *
43383369 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
*
43383396 GGGTATTTTGATAATTTTAC
1 GGGTATTTCGATAATTTTAC
43383416 GCTACGGGGC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCTTCGA
Found at i:43391901 original size:41 final size:41
Alignment explanation
Indices: 43391838--43391983 Score: 202
Period size: 41 Copynumber: 3.6 Consensus size: 41
43391828 GTACATCCAA
* * *
43391838 GGGTACCGAAGTACAAATAGGGGCACGTATGTATAATTCAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGTAATTCAG
* *
43391879 GGGTACCGAAGTAGAAACAGGGGCACGTATGTGTAATTCAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGTAATTCAG
* * * *
43391920 GGGTACTAAAGTACAAAAAGGGGCACGTATGTGCAATTTAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGTAATTCAG
*
43391961 GGGTACAAAAGTACAAACAGGGG
1 GGGTACCAAAGTACAAACAGGGG
43391984 TACTGAAGTA
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.19
Consensus pattern (41 bp):
GGGTACCAAAGTACAAACAGGGGCACGTATGTGTAATTCAG
Found at i:43391922 original size:21 final size:21
Alignment explanation
Indices: 43391856--43391922 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
43391846 AAGTACAAAT
*
43391856 AGGGGCACGTATGTATAATTC
1 AGGGGCACGTATGTGTAATTC
* * *
43391877 AGGGGTACCG-AAGTAG-AA-AC
1 AGGGGCA-CGTATGT-GTAATTC
43391897 AGGGGCACGTATGTGTAATTC
1 AGGGGCACGTATGTGTAATTC
43391918 AGGGG
1 AGGGG
43391923 TACTAAAGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
19 3 0.09
20 12 0.35
21 17 0.50
22 2 0.06
ACGTcount: A:0.30, C:0.13, G:0.36, T:0.21
Consensus pattern (21 bp):
AGGGGCACGTATGTGTAATTC
Found at i:43391984 original size:20 final size:20
Alignment explanation
Indices: 43391959--43392000 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
43391949 TGTGCAATTT
43391959 AGGGGTACAAAAGTACAAAC
1 AGGGGTACAAAAGTACAAAC
**
43391979 AGGGGTACTGAAGTACAAAC
1 AGGGGTACAAAAGTACAAAC
43391999 AG
1 AG
43392001 AGGCACGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.29, T:0.12
Consensus pattern (20 bp):
AGGGGTACAAAAGTACAAAC
Found at i:43395290 original size:29 final size:28
Alignment explanation
Indices: 43395169--43395291 Score: 122
Period size: 29 Copynumber: 4.3 Consensus size: 28
43395159 CTCCCTTTTA
* *
43395169 ACAAAGGCTTCCTTTAAGAGAGATAGTC
1 ACAAAGGCTTCCTTTAACAGAGATAGCC
*
43395197 ACAAAGGCTTCCGTTAACAGAGATAGCC
1 ACAAAGGCTTCCTTTAACAGAGATAGCC
* *
43395225 ACAAAGGATTCCTTTTAACAGAGATCA-CT
1 ACAAAGGCTTCC-TTTAACAGAGAT-AGCC
* * * * *
43395254 ATAGAGGCTTCCATTTAATAAATATAGCC
1 ACAAAGGCTTCC-TTTAACAGAGATAGCC
43395283 ACAAAGGCT
1 ACAAAGGCT
43395292 AACTTATATG
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
28 37 0.49
29 38 0.50
30 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (28 bp):
ACAAAGGCTTCCTTTAACAGAGATAGCC
Found at i:43400802 original size:29 final size:29
Alignment explanation
Indices: 43400769--43400842 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
43400759 GTTGTGAGAT
* *
43400769 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
43400798 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
43400827 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
43400843 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:43414621 original size:50 final size:50
Alignment explanation
Indices: 43414504--43414743 Score: 203
Period size: 50 Copynumber: 4.7 Consensus size: 50
43414494 AAAGAGATCC
* * * *
43414504 CATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATCATAGGTC-
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTCT
*
43414559 CTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCT
1 C-ATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* * * * * *
43414610 CATGGAAGACCACGTCTTGGACATGGCGTTGGCACCGAGATGAGAGGCCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
** * * * * **
43414660 CCCGTAAGACCATGTCTAGGATATGGCATGGGCACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* * * *
43414710 CATGTAAGACAATATATGGGATATGGCATTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
43414744 GTAAACATCC
Statistics
Matches: 153, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
50 116 0.76
51 1 0.01
53 3 0.02
55 2 0.01
56 31 0.20
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
Found at i:43414736 original size:100 final size:100
Alignment explanation
Indices: 43414563--43414743 Score: 227
Period size: 100 Copynumber: 1.8 Consensus size: 100
43414553 TAGGTCCTAT
* * * ** * * * *
43414563 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCATGGAAGACCACGTCTT
1 GTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAACTCTCATGGAAGACAACATATG
*
43414628 GGACATGGCGTTGGCACCGAGATGAGAGGCCCCCC
66 GGACATGGCATTGGCACCGAGATGAGAGGCCCCCC
* * * *
43414663 GTAAGACCATGTCTAGGATATGGCATGGGCACCGATATGAGAACTCTCATGTAAGACAATATATG
1 GTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAACTCTCATGGAAGACAACATATG
*
43414728 GGATATGGCATTGGCA
66 GGACATGGCATTGGCA
43414744 GTAAACATCC
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
100 66 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (100 bp):
GTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAACTCTCATGGAAGACAACATATG
GGACATGGCATTGGCACCGAGATGAGAGGCCCCCC
Done.