Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 146 of 228
Found at i:43925132 original size:20 final size:20
Alignment explanation
Indices: 43925107--43925146 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
43925097 CAGAAAATGA
43925107 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
43925127 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
43925147 GAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:43925260 original size:20 final size:20
Alignment explanation
Indices: 43925235--43925277 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
43925225 AGAAAAGTTG
* *
43925235 TTTATACATATATTAATAAA
1 TTTATACACATAGTAATAAA
*
43925255 TTTATATACATAGTAATAAA
1 TTTATACACATAGTAATAAA
43925275 TTT
1 TTT
43925278 TTATATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTATACACATAGTAATAAA
Found at i:43925354 original size:22 final size:25
Alignment explanation
Indices: 43925322--43925379 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 25
43925312 GATTTATTTA
*
43925322 TAAATAAATAAATAA-A-TCAA-AT
1 TAAATATATAAATAATACTCAATAT
43925344 TAAATATAT-AATAATACTCAATTAT
1 TAAATATATAAATAATACTCAA-TAT
43925369 TAAA-ATATAAA
1 TAAATATATAAA
43925380 AGCATTGCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 5 0.17
22 9 0.30
23 4 0.13
24 4 0.13
25 8 0.27
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAATATATAAATAATACTCAATAT
Found at i:43927294 original size:12 final size:12
Alignment explanation
Indices: 43927279--43927315 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
43927269 TGTTAAGGAT
43927279 AGGGGAAAGGGA
1 AGGGGAAAGGGA
43927291 AGGGG-AAGGGA
1 AGGGGAAAGGGA
*
43927302 AAGGGAAAGGGA
1 AGGGGAAAGGGA
43927314 AG
1 AG
43927316 ATCGGTGTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (12 bp):
AGGGGAAAGGGA
Found at i:43927301 original size:17 final size:17
Alignment explanation
Indices: 43927281--43927315 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
43927271 TTAAGGATAG
*
43927281 GGGAAAGGGAAGGGGAA
1 GGGAAAGGGAAAGGGAA
43927298 GGGAAAGGGAAAGGGAA
1 GGGAAAGGGAAAGGGAA
43927315 G
1 G
43927316 ATCGGTGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (17 bp):
GGGAAAGGGAAAGGGAA
Found at i:43927313 original size:6 final size:6
Alignment explanation
Indices: 43927281--43927314 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
43927271 TTAAGGATAG
*
43927281 GGGAAA GGG-AA GGGGAA GGGAAA GGGAAA GGGAA
1 GGGAAA GGGAAA GGGAAA GGGAAA GGGAAA GGGAA
43927315 GATCGGTGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (6 bp):
GGGAAA
Found at i:43928834 original size:50 final size:49
Alignment explanation
Indices: 43928756--43928900 Score: 184
Period size: 49 Copynumber: 2.9 Consensus size: 49
43928746 TTTTCTGTAC
* * * * *
43928756 TGCCAATGCCATATCTCAGATATTGTCTTACATGGGAGATCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTCTCATATCGG
* * *
43928806 TGCCCATGCCATGTCCTAGACATGGTCTTACA-GGGTACTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACTCTCATATCGG
43928855 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTCTCATA
43928901 ATCTCAATGA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 44 0.54
50 37 0.46
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTCTCATATCGG
Found at i:43936581 original size:50 final size:50
Alignment explanation
Indices: 43936527--43936633 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 50
43936517 ATATGAGAGT
* * *
43936527 TCTCATATCAGTGCCCATGCCATATCCTAGACATGGTCTTAC-GGGGTACC
1 TCTCATATCAGTGCCAACGCCATATCCCAGACATGGTCTTACAGGGG-ACC
* * * *
43936577 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCAGTGCCAACGCCATATCCCAGACATGGTCTTACAGGGGACC
43936627 TCTCATA
1 TCTCATA
43936634 ATCTCAATGA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 45 0.94
51 3 0.06
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (50 bp):
TCTCATATCAGTGCCAACGCCATATCCCAGACATGGTCTTACAGGGGACC
Found at i:43952037 original size:27 final size:27
Alignment explanation
Indices: 43952006--43952183 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
43951996 TAAATTGTAC
43952006 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
43952033 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43952059 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
43952087 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
43952115 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43952142 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
43952169 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
43952184 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:43952120 original size:82 final size:81
Alignment explanation
Indices: 43952007--43952162 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
43951997 AAATTGTACA
*
43952007 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
43952071 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43952088 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
43952153 TGCGAGTTGA
65 TGCGAATTGA
43952163 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43952174 original size:82 final size:81
Alignment explanation
Indices: 43952003--43952183 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
43951993 GATTAAATTG
*
43952003 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
43952068 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
43952084 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
43952148 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
43952166 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
43952184 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:43970807 original size:20 final size:20
Alignment explanation
Indices: 43970772--43970822 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
43970762 GTATCGATCT
*
43970772 GGTATCGATACCTTT-CTGAA
1 GGTATCGATATCTTTCCT-AA
*
43970792 GGTATCGATATGTTTCCTAA
1 GGTATCGATATCTTTCCTAA
*
43970812 TGTATCGATAT
1 GGTATCGATAT
43970823 TCCTGTTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (20 bp):
GGTATCGATATCTTTCCTAA
Found at i:43972819 original size:6 final size:6
Alignment explanation
Indices: 43972805--43972890 Score: 109
Period size: 6 Copynumber: 14.3 Consensus size: 6
43972795 ATGATTTAAA
* * * * ** *
43972805 TGTGTG TGCGTG TGCGTG CGTGCG TGTGCA TGTATG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
43972853 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TG
43972891 CGTTTCCTTC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.02, C:0.06, G:0.48, T:0.44
Consensus pattern (6 bp):
TGTGTG
Found at i:43972846 original size:4 final size:4
Alignment explanation
Indices: 43972805--43972890 Score: 109
Period size: 4 Copynumber: 21.5 Consensus size: 4
43972795 ATGATTTAAA
* * * * ** *
43972805 TGTG TGTG CGTG TGCG TGCG TGCG TGTG CATG TATG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
43972853 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TG
43972891 CGTTTCCTTC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.02, C:0.06, G:0.48, T:0.44
Consensus pattern (4 bp):
TGTG
Found at i:43972852 original size:10 final size:10
Alignment explanation
Indices: 43972805--43972890 Score: 109
Period size: 10 Copynumber: 8.6 Consensus size: 10
43972795 ATGATTTAAA
*
43972805 TGTGTGTGCG
1 TGTGTGTGTG
* *
43972815 TGTGCGTGCG
1 TGTGTGTGTG
* **
43972825 TGCGTGTGCA
1 TGTGTGTGTG
*
43972835 TGTATGTGTG
1 TGTGTGTGTG
43972845 TGTGTGTGTG
1 TGTGTGTGTG
43972855 TGTGTGTGTG
1 TGTGTGTGTG
43972865 TGTGTGTGTG
1 TGTGTGTGTG
43972875 TGTGTGTGTG
1 TGTGTGTGTG
43972885 TGTGTG
1 TGTGTG
43972891 CGTTTCCTTC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 67 1.00
ACGTcount: A:0.02, C:0.06, G:0.48, T:0.44
Consensus pattern (10 bp):
TGTGTGTGTG
Found at i:43980696 original size:24 final size:24
Alignment explanation
Indices: 43980669--43980714 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
43980659 AGAACAATCC
* *
43980669 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
43980693 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
43980715 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:43982982 original size:10 final size:10
Alignment explanation
Indices: 43982967--43983004 Score: 53
Period size: 9 Copynumber: 4.0 Consensus size: 10
43982957 AAAAGGGGAT
43982967 GACAAAAAAA
1 GACAAAAAAA
43982977 GAC-AAAAAA
1 GACAAAAAAA
43982986 -ACAAAAAAA
1 GACAAAAAAA
*
43982995 AACAAAAAAA
1 GACAAAAAAA
43983005 AAAAAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 12 0.46
10 12 0.46
ACGTcount: A:0.84, C:0.11, G:0.05, T:0.00
Consensus pattern (10 bp):
GACAAAAAAA
Found at i:43982989 original size:8 final size:8
Alignment explanation
Indices: 43982971--43983015 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
43982961 GGGGATGACA
43982971 AAAAAAGAC
1 AAAAAA-AC
43982980 AAAAAAAC
1 AAAAAAAC
43982988 AAAAAAA-
1 AAAAAAAC
*
43982995 AACAAAAAA
1 AA-AAAAAC
43983004 AAAAAAAC
1 AAAAAAAC
43983012 AAAA
1 AAAA
43983016 TCTACTAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
7 2 0.06
8 23 0.70
9 8 0.24
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:43982991 original size:18 final size:18
Alignment explanation
Indices: 43982968--43983010 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
43982958 AAAGGGGATG
*
43982968 ACAAAAAAAGACAAAAAA
1 ACAAAAAAAAACAAAAAA
43982986 ACAAAAAAAAACAAAAAA
1 ACAAAAAAAAACAAAAAA
43983004 A-AAAAAA
1 ACAAAAAA
43983011 CAAAATCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (18 bp):
ACAAAAAAAAACAAAAAA
Found at i:43983005 original size:10 final size:10
Alignment explanation
Indices: 43982970--43983015 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
43982960 AGGGGATGAC
* *
43982970 AAAAAAAGAC
1 AAAAAAACAA
43982980 AAAAAAACAA
1 AAAAAAACAA
43982990 AAAAAAACAA
1 AAAAAAACAA
43983000 AAAAAAA-AA
1 AAAAAAACAA
*
43983009 AACAAAA
1 AAAAAAA
43983016 TCTACTAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 8 0.24
10 25 0.76
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:43984635 original size:43 final size:44
Alignment explanation
Indices: 43984577--43984703 Score: 111
Period size: 43 Copynumber: 2.9 Consensus size: 44
43984567 ATCAGTGAAA
* *
43984577 ATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAA-
1 ATAGCAAACCTTGCCTTCCTGCATTGACAGCGAAGCAGATT-AAG
* * * *
43984621 A-A-CAAAGCCTTGCCTTCCT-CAGTTG-TAGTGGAGCAGGTTAAGG
1 ATAGCAAA-CCTTGCCTTCCTGCA-TTGACAGCGAAGCAGATTAA-G
* *
43984664 ATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGAT
1 ATAGCAAACCTTGCCTTCCTGCATTGACAGCGAAGCAGAT
43984704 CAAAGATGGC
Statistics
Matches: 63, Mismatches: 12, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
41 2 0.03
42 15 0.24
43 16 0.25
44 16 0.25
45 14 0.22
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (44 bp):
ATAGCAAACCTTGCCTTCCTGCATTGACAGCGAAGCAGATTAAG
Found at i:43984877 original size:132 final size:132
Alignment explanation
Indices: 43984697--43985340 Score: 947
Period size: 132 Copynumber: 4.9 Consensus size: 132
43984687 TTGACAGCGA
* * * * *
43984697 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAACTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* *
43984762 TCTACTTCCCTAGACAACAGTAGAATAGATTGAAGACTTT-AGATCTTATC-CCACTAAGCAGTA
66 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGA-TTTCAGATCTTATCTCC-CTAAGCAGTA
43984825 GTGG
129 GTGG
* * * *
43984829 AGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTATAGTAGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* *
43984894 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
43984959 GG
131 GG
* * *
43984961 AGCAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
*
43985026 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCTGTAGT
66 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
43985091 GG
131 GG
* *
43985093 AGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGGACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* *
43985158 TCTACTTCCCT-GGTCAACAGTGGAATAGATTGAAGATTTCAGATCTTAGCTCCCTAAGCTGTAG
66 TCTACTTCCCTAGG-CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
43985222 TGG
130 TGG
* *
43985225 AGTAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* * * * * *
43985290 CCTACCTCCCT-GGTCAGCAGTGGAATAGGTTGGAGATTGTAAG-TCTTATCT
66 TCTACTTCCCTAGG-CAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCT
43985341 ACCTGCAGTT
Statistics
Matches: 472, Mismatches: 36, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
131 5 0.01
132 462 0.98
133 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:43985123 original size:44 final size:44
Alignment explanation
Indices: 43984943--43985256 Score: 109
Period size: 44 Copynumber: 7.1 Consensus size: 44
43984933 CAAATCTTAT
* **
43984943 CTCCCTAAGC-AGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTAAGCTA-TAGTGGAGTAGATCGAAGATGGTGGATTTTAC
* ** * * * * * * * *
43984987 CTCCTTGTGGTTACAGTGGAGTACATTGAAGCTAGT-AATTCTAC
1 CTCCCT-AAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
* * * * * * * * * *
43985031 TTCCCTAGGCAACAGTGGAATAGATTGAAGAT-TTCAGATCTTAT
1 CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGT-GGATTTTAC
* *
43985075 CTCCCTAAGCTGTAGTGGAGCAGATCGAAGATGGTGGATTTTAC
1 CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
** * * * * * * * *
43985119 CTCCCTGTGGTTATAGTGGAGGACATTGAAGCTAGT-AATTCTAC
1 CTCCCT-AAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
* * * * * * * * * *
43985163 TTCCCT-GGTCAACAGTGGAATAGATTGAAGAT-TTCAGATCTTAG
1 CTCCCTAAG-CTATAGTGGAGTAGATCGAAGATGGT-GGATTTTAC
*
43985207 CTCCCTAAGCTGTAGTGGAGTAGATCGAAGATGGTGGATTTTAC
1 CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
43985251 CTCCCT
1 CTCCCT
43985257 GTGGTTATAG
Statistics
Matches: 186, Mismatches: 73, Indels: 22
0.66 0.26 0.08
Matches are distributed among these distances:
42 4 0.02
43 36 0.19
44 105 0.56
45 40 0.22
46 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (44 bp):
CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
Found at i:43985296 original size:44 final size:45
Alignment explanation
Indices: 43985116--43985301 Score: 105
Period size: 44 Copynumber: 4.2 Consensus size: 45
43985106 TGGTGGATTT
* * *
43985116 TACCTCCCTGTGGTTATAGTGGAGGACATTGAAGCTAGT-AATTC
1 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
* * * * * * *
43985160 TACTTCCC--TGGTCAACAGTGGAATAGATTGAAGAT-TTCAGATCT
1 TACCTCCCTGTGGT-TATAGTGGAGTACATTGAAGATAGTCA-ATCC
* ** * * * * * ** **
43985204 TAGCTCCCT-AAGCTGTAGTGGAGTAGATCGAAGATGGTGGATTT
1 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
*
43985248 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGT-AATCC
1 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
43985292 TACCTCCCTG
1 TACCTCCCTG
43985302 GTCAGCAGTG
Statistics
Matches: 100, Mismatches: 36, Indels: 12
0.68 0.24 0.08
Matches are distributed among these distances:
42 5 0.05
43 17 0.17
44 55 0.55
45 23 0.23
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
Found at i:44015406 original size:104 final size:102
Alignment explanation
Indices: 44015287--44015529 Score: 361
Period size: 103 Copynumber: 2.4 Consensus size: 102
44015277 ATCTGTTTTC
*
44015287 TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTT
1 TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA-TTTGTTTCAACTATTT
* *
44015352 CAAAATAAAAGTTTTGATTTTTAAGAAAAATAGTATTT
65 CAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
44015390 TTTTAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTT
1 TTTT-AGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTT
* *
44015455 CAAAATAAAAGCTTTGATCTTTAATAAAAATAGT-GTT
65 CAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
* *
44015492 TTTT--T--TTTAAAAGAGAAAGTTTAGATTTTTAAAATAAA
1 TTTTAGTCATTTTAAAG-GAAAGTTTAAATTTTTAAAATAAA
44015530 ATTATGTTTT
Statistics
Matches: 131, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
97 7 0.05
98 23 0.18
99 1 0.01
102 6 0.05
103 50 0.38
104 44 0.34
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (102 bp):
TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTTC
AAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
Found at i:44015484 original size:103 final size:102
Alignment explanation
Indices: 44015270--44015529 Score: 368
Period size: 104 Copynumber: 2.5 Consensus size: 102
44015260 GATTTTAAAA
*
44015270 AATAAAAATCTGTTTTCTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
1 AATAAAAAT-AGTTTT-TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
* * *
44015335 TTTTTTTTCAACTATTTCAAAATAAAAGTTTTGATTTTT
64 TTTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
*
44015374 AAGAAAAATAGTATTTTTTTAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
1 AATAAAAATAGT-TTTTTTT-AGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
44015439 -TTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
64 TTTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
* * *
44015477 AATAAAAATAGTGTTTTTT--T--TTTAAAAGAGAAAGTTTAGATTTTTAAAATAAA
1 AATAAAAATAGTTTTTTTTAGTCATTTTAAAG-GAAAGTTTAAATTTTTAAAATAAA
44015530 ATTATGTTTT
Statistics
Matches: 144, Mismatches: 9, Indels: 12
0.87 0.05 0.07
Matches are distributed among these distances:
97 7 0.05
98 23 0.16
99 1 0.01
102 6 0.04
103 52 0.36
104 55 0.38
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (102 bp):
AATAAAAATAGTTTTTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATT
TTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
Found at i:44016858 original size:14 final size:14
Alignment explanation
Indices: 44016839--44016868 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
44016829 AGAAACTTTT
44016839 TAAGAAAGCTAATA
1 TAAGAAAGCTAATA
44016853 TAAGAAAGCTAATA
1 TAAGAAAGCTAATA
44016867 TA
1 TA
44016869 TATTACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (14 bp):
TAAGAAAGCTAATA
Found at i:44020455 original size:20 final size:20
Alignment explanation
Indices: 44020432--44020470 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
44020422 TCAATCATGC
* *
44020432 ATTCATTCATTCATCCATTA
1 ATTCACTCATTCACCCATTA
44020452 ATTCACTCATTCACCCATT
1 ATTCACTCATTCACCCATT
44020471 TGTTTATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTCACTCATTCACCCATTA
Found at i:44032465 original size:30 final size:30
Alignment explanation
Indices: 44032431--44032490 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
44032421 AAAATTAAGT
*
44032431 TTGAATCTAGAAAAATATACTTTCGGGGTA
1 TTGAATCTAGAAAAATATACTTTCAGGGTA
* *
44032461 TTGAATCTAGCAAAATGTACTTTCAGGGTA
1 TTGAATCTAGAAAAATATACTTTCAGGGTA
44032491 AAATTAGGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (30 bp):
TTGAATCTAGAAAAATATACTTTCAGGGTA
Found at i:44041147 original size:5 final size:5
Alignment explanation
Indices: 44041137--44041162 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
44041127 AGCAAAACTT
44041137 TCTTC TCTTC TCTTC TCTTC TCTTC T
1 TCTTC TCTTC TCTTC TCTTC TCTTC T
44041163 AACGTTGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TCTTC
Found at i:44041565 original size:30 final size:31
Alignment explanation
Indices: 44041509--44041566 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
44041499 CACTCTTAAA
** *
44041509 ATATTTACACTATTGGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
44041540 ATATTTACACTA-TAATCCCTCAAATTT
1 ATATTTACACTATTAATCCCTCAAATTT
44041567 CGAGTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 12 0.50
31 12 0.50
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.45
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:44041759 original size:23 final size:23
Alignment explanation
Indices: 44041731--44041774 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
44041721 CTTTCTTACT
*
44041731 GTAGTAATTTTTGGGGTATTATA
1 GTAGTAATTTTTGGGATATTATA
44041754 GTAGTAATTTTTGGGATATTA
1 GTAGTAATTTTTGGGATATTA
44041775 CAGGAAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (23 bp):
GTAGTAATTTTTGGGATATTATA
Found at i:44041852 original size:42 final size:42
Alignment explanation
Indices: 44041793--44042174 Score: 516
Period size: 42 Copynumber: 9.1 Consensus size: 42
44041783 ACGGAAAGCA
44041793 TTCATTGCATTTAGAGGCCCAGGTGTGGAGG-CTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTC-CATTTACTT
* *
44041835 TTCATTGCATTTAGAGGCCCACGTGTGGAGGTCCATTGACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
44041877 TTCATTGCATTTAAAGGTCCATGTGTGGAAGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
44041919 TTCATTGCATTTAGAGGCCCACGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
44041961 TTTATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
44042003 TTCATTACATTTAGAGGCCCATGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
44042045 TTCATTGCATTTAGAGGCCCTA-GTGTAGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCC-AGGTGTGGAGGTCCATTTACTT
* * **
44042087 TTCATTGCATTTAAAGACTTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
44042129 TTCATTGCATTTAAAAGCCCAAGTGTGGATGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
44042171 TTCA
1 TTCA
44042175 CTATATTATA
Statistics
Matches: 301, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.00
42 298 0.99
43 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:44043380 original size:20 final size:20
Alignment explanation
Indices: 44043355--44043399 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
44043345 TAAATATACA
44043355 TAATTAAAATT-AGACACAAT
1 TAATT-AAATTAAGACACAAT
* *
44043375 TAATTAAGTTAAGACACAGT
1 TAATTAAATTAAGACACAAT
44043395 TAATT
1 TAATT
44043400 CGGTTGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (20 bp):
TAATTAAATTAAGACACAAT
Found at i:44044749 original size:93 final size:93
Alignment explanation
Indices: 44044652--44044828 Score: 238
Period size: 94 Copynumber: 1.9 Consensus size: 93
44044642 TTTGTAGTCA
*
44044652 TTTTAAAG-GAAAGTTTA-ATTTTTTTTAAAA-AAAA-TTTGATTTTTTTCAAGTATTTCAAAAT
1 TTTTAAAGAGAAAGTTTAGA---TTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAAT
44044713 AAAAGCTTTGATCT-TTAAGAAAAATAGTGTTT
63 AAAA-CTTTGAT-TGTTAAGAAAAATAGTGTTT
**
44044745 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTTGAAATAAA
1 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAATAAA
*
44044810 ATTTTGATTGTTAAGAAAA
66 ACTTTGATTGTTAAGAAAA
44044829 GTAATAAATT
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
92 10 0.13
93 27 0.36
94 37 0.49
95 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (93 bp):
TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAATAAA
ACTTTGATTGTTAAGAAAAATAGTGTTT
Found at i:44044779 original size:144 final size:144
Alignment explanation
Indices: 44044469--44044778 Score: 400
Period size: 144 Copynumber: 2.2 Consensus size: 144
44044459 AAAAAAGGAG
****
44044469 AAAGTTTAGATTTTAAAAAATAAAAA-A-A-AAAAT-TAGTCATTTTAAAGGAAAGTTTAAAATT
1 AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAAAATT
* * *
44044530 TTAAAACAAAGTTTTGATTTTTTTTAACTATTTCAAAATAAAAGCTTTGATCATTAATAAAAATA
66 TTAAAACAAAGATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCATTAAGAAAAATA
*
44044595 ATTTTTTTTTAAAA
131 ATGTTTTTTTAAAA
* **
44044609 AGAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAATTTT
1 AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAA--AA
* *
44044674 TTTTAAAA-AAA-ATTTGATTTTTTTCAAGTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAA
64 TTTTAAAACAAAGATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCATTAAGAAAAA
*
44044737 TAGTGTTTTTTTAAAGA
129 TAATGTTTTTTTAAA-A
*
44044754 GAAAGTTTAGATTTT-TAAAATAAAA
1 -AAAGTTTAGATTTTAAAAAATAAAA
44044779 TTTTGATTTT
Statistics
Matches: 146, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
140 25 0.17
141 1 0.01
142 1 0.01
143 1 0.01
144 84 0.58
145 13 0.09
146 21 0.14
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (144 bp):
AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAAAATT
TTAAAACAAAGATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCATTAAGAAAAATA
ATGTTTTTTTAAAA
Found at i:44044786 original size:20 final size:21
Alignment explanation
Indices: 44044744--44044789 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
44044734 AAATAGTGTT
*
44044744 TTTTTAAAGAGAAAGTTTAGA
1 TTTTTAAAGAGAAAATTTAGA
* *
44044765 TTTTTAAA-ATAAAATTTTGA
1 TTTTTAAAGAGAAAATTTAGA
44044785 TTTTT
1 TTTTT
44044790 TTCAACTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (21 bp):
TTTTTAAAGAGAAAATTTAGA
Found at i:44044790 original size:21 final size:22
Alignment explanation
Indices: 44044743--44044790 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
44044733 AAAATAGTGT
*
44044743 TTTTTTAAAGAGAAAGTTTAGA
1 TTTTTTAAAGAGAAAATTTAGA
* *
44044765 -TTTTTAAA-ATAAAATTTTGA
1 TTTTTTAAAGAGAAAATTTAGA
44044785 TTTTTT
1 TTTTTT
44044791 TCAACTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (22 bp):
TTTTTTAAAGAGAAAATTTAGA
Found at i:44044878 original size:94 final size:94
Alignment explanation
Indices: 44044678--44044878 Score: 221
Period size: 94 Copynumber: 2.1 Consensus size: 94
44044668 AATTTTTTTT
* * **
44044678 AAAAAAAATTTGATTTTTTTCAAGTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTGT
1 AAAAAAAATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAATAA
* **
44044743 TTTTTTAAAGAGAAAGTTTAGATTTTTAA
66 TTTTTTAAAGAGAAACTTTAGATTTCAAA
* * ** * *
44044772 AATAAAATTTTGATTTTTTTCAACTATTTTGAAATAAAA-TTTTGAT-TGTTAAGAAAAGTAATA
1 AAAAAAAATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCT-TTAAGAAAAATAAT-
44044835 AATTTTTTAAAGA-AAACTTT-GATTATGCAAA
64 AATTTTTTAAAGAGAAACTTTAGATT-T-CAAA
44044866 AAAAAAAATTTGA
1 AAAAAAAATTTGA
44044879 CCATTGGGCT
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
92 5 0.06
93 25 0.28
94 58 0.66
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (94 bp):
AAAAAAAATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAATAA
TTTTTTAAAGAGAAACTTTAGATTTCAAA
Found at i:44047182 original size:27 final size:27
Alignment explanation
Indices: 44047150--44047207 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
44047140 TTCCAAATGG
* * *
44047150 TAAACACGGGTTAGTCTACCGAGACAA
1 TAAACACAGGATAGTCCACCGAGACAA
*
44047177 TAAACACAGGATAGTCCATCGAGACAA
1 TAAACACAGGATAGTCCACCGAGACAA
44047204 TAAA
1 TAAA
44047208 AATACGGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (27 bp):
TAAACACAGGATAGTCCACCGAGACAA
Found at i:44054046 original size:98 final size:98
Alignment explanation
Indices: 44053874--44054068 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
44053864 TTTGCTCAAA
* *
44053874 TACTTTAGTTTTAATCATGTGTTTTCTTTTCTTCTTACTTTTAGTTTGTCTGTTTTTGTTTTTGT
1 TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTACTTTTAGTTTGTCTATTTTTGTTTTTGT
* * *
44053939 TTTTTGTTTACTTGAGGACAAGCAATGACTTAG
66 TTTTCGTTTACTTAAGGACAAACAATGACTTAG
*
44053972 TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTATTTTTAGTTTGTCTATTTTTGTTTTTGT
1 TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTACTTTTAGTTTGTCTATTTTTGTTTTTGT
44054037 TTTTCGTTTACTTAAGGACAAACAATGACTTA
66 TTTTCGTTTACTTAAGGACAAACAATGACTTA
44054069 AGTGTGGGGG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57
Consensus pattern (98 bp):
TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTACTTTTAGTTTGTCTATTTTTGTTTTTGT
TTTTCGTTTACTTAAGGACAAACAATGACTTAG
Found at i:44056056 original size:5 final size:5
Alignment explanation
Indices: 44056042--44056074 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
44056032 AAGTATTAAG
44056042 TATA- TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
44056075 ATGATAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:44056149 original size:15 final size:16
Alignment explanation
Indices: 44056124--44056154 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
44056114 GCAAAATGAA
44056124 AAAGAAAAGGAGAAAG
1 AAAGAAAAGGAGAAAG
44056140 AAAG-AAAGGAGAAAG
1 AAAGAAAAGGAGAAAG
44056155 CAAGCCTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGGAGAAAG
Found at i:44058800 original size:24 final size:23
Alignment explanation
Indices: 44058762--44058808 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
44058752 TAATGCTCTT
*
44058762 AATATTTTACAAAAATATTATATA
1 AATATTTTACAAAAA-AATATATA
**
44058786 AATATTTTAGTAAAAAATATATA
1 AATATTTTACAAAAAAATATATA
44058809 CTACAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
AATATTTTACAAAAAAATATATA
Found at i:44062614 original size:8 final size:8
Alignment explanation
Indices: 44062601--44062626 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
44062591 TTAATTATAT
44062601 TATAAAAG
1 TATAAAAG
44062609 TATAAAAG
1 TATAAAAG
44062617 TATAAAAG
1 TATAAAAG
44062625 TA
1 TA
44062627 AAGTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.27
Consensus pattern (8 bp):
TATAAAAG
Found at i:44067611 original size:26 final size:26
Alignment explanation
Indices: 44067582--44067772 Score: 240
Period size: 26 Copynumber: 7.3 Consensus size: 26
44067572 GTGTTGGTCG
44067582 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
*
44067608 AAATACCCTCGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTACCA
* * *
44067634 AAATACCCTCAATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCA
* *
44067660 AAATACCATCGATGAGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
** **
44067686 AAATACCCTTAATGGGTAAATTATTA
1 AAATACCCTCGATGGGTAAATTACCA
44067712 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
* * *
44067738 AAATACCCCCG-TAGGGAAAAATTACTA
1 AAATACCCTCGAT-GGG-TAAATTACCA
44067765 AAATACCC
1 AAATACCC
44067773 CTAGAAGGGT
Statistics
Matches: 142, Mismatches: 21, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
25 1 0.01
26 125 0.88
27 16 0.11
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACCA
Found at i:44068167 original size:28 final size:28
Alignment explanation
Indices: 44068135--44068218 Score: 69
Period size: 33 Copynumber: 2.8 Consensus size: 28
44068125 TAACAGGCTT
44068135 AGGCCCACACTGTTATTATATTGGACTA
1 AGGCCCACACTGTTATTATATTGGACTA
** *
44068163 AGGCCCGTATTGTTCTGTTATTATATTGGGCTA
1 AGGCCC--A---CACTGTTATTATATTGGACTA
* * *
44068196 AGGCCCGCACTGTTCTGATATTG
1 AGGCCCACACTGTTATTATATTG
44068219 TATTTGGCTA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
28 18 0.42
30 1 0.02
33 24 0.56
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (28 bp):
AGGCCCACACTGTTATTATATTGGACTA
Found at i:44068186 original size:33 final size:32
Alignment explanation
Indices: 44068144--44068239 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 32
44068134 TAGGCCCACA
* *
44068144 CTGTTATTATATTGGACTAAGGCCCGTATTGTT
1 CTGTTATTATATTGG-CTAAGGCCCGCACTGTT
44068177 CTGTTATTATATTGGGCTAAGGCCCGCACTGTT
1 CTGTTATTATATT-GGCTAAGGCCCGCACTGTT
* * *
44068210 CTGATATTGTATTTGGCTAAGGCCCACACT
1 CTGTTATTATA-TTGGCTAAGGCCCGCACT
44068240 AATACTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
33 52 0.93
34 4 0.07
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (32 bp):
CTGTTATTATATTGGCTAAGGCCCGCACTGTT
Found at i:44072945 original size:18 final size:18
Alignment explanation
Indices: 44072922--44072957 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
44072912 AAATTTTATT
*
44072922 TATTTTTCTTGGAATCTA
1 TATTTTCCTTGGAATCTA
44072940 TATTTTCCTTGGAATCTA
1 TATTTTCCTTGGAATCTA
44072958 ACTTTCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.11, T:0.53
Consensus pattern (18 bp):
TATTTTCCTTGGAATCTA
Found at i:44072963 original size:17 final size:18
Alignment explanation
Indices: 44072929--44072964 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44072919 ATTTATTTTT
*
44072929 CTTGGAATCTATATTTTC
1 CTTGGAATCTATACTTTC
44072947 CTTGGAATCTA-ACTTTC
1 CTTGGAATCTATACTTTC
44072964 C
1 C
44072965 CTTGAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (18 bp):
CTTGGAATCTATACTTTC
Found at i:44073551 original size:10 final size:10
Alignment explanation
Indices: 44073536--44073562 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
44073526 TTAAGTTAAA
44073536 ATTTATAACC
1 ATTTATAACC
44073546 ATTTATAACC
1 ATTTATAACC
44073556 ATTTATA
1 ATTTATA
44073563 TTTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (10 bp):
ATTTATAACC
Found at i:44074145 original size:8 final size:8
Alignment explanation
Indices: 44074132--44074157 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
44074122 CATATGGCTA
44074132 ATTTAGGG
1 ATTTAGGG
44074140 ATTTAGGG
1 ATTTAGGG
44074148 ATTTAGGG
1 ATTTAGGG
44074156 AT
1 AT
44074158 CCCACATCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (8 bp):
ATTTAGGG
Found at i:44075990 original size:12 final size:13
Alignment explanation
Indices: 44075975--44076007 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
44075965 TTTTGCTTTC
44075975 AATTAAAAT-ATA
1 AATTAAAATGATA
44075987 AATTAAAATGATA
1 AATTAAAATGATA
*
44076000 ATTTAAAA
1 AATTAAAA
44076008 ATTTATCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTAAAATGATA
Found at i:44077050 original size:40 final size:42
Alignment explanation
Indices: 44076957--44077066 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 42
44076947 GATACGTAGA
* **
44076957 AAAAT-GCTTCCAGCT-GGAAGCTCTTTTTGCCATTTTTCAGC
1 AAAATCGCTTCCAG-TAGGAAGCTCTTTTCGCCATAGTTCAGC
*
44076998 AAAAGCGCTTCCAGTAGGAAGCTCTTTTCGCCA-AGTT-AGC
1 AAAATCGCTTCCAGTAGGAAGCTCTTTTCGCCATAGTTCAGC
* *
44077038 AAAATCGCTTCCACTAGGAAGTTCTTTTC
1 AAAATCGCTTCCAGTAGGAAGCTCTTTTC
44077067 CTCTAACTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
40 29 0.48
41 7 0.12
42 24 0.40
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (42 bp):
AAAATCGCTTCCAGTAGGAAGCTCTTTTCGCCATAGTTCAGC
Found at i:44079507 original size:19 final size:20
Alignment explanation
Indices: 44079474--44079512 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
44079464 TAGTTTAGTT
* *
44079474 ATTTTTTTATCTTTTTATTA
1 ATTTTTTAATCTTTTAATTA
44079494 ATTTTTTAAT-TTTTAATTA
1 ATTTTTTAATCTTTTAATTA
44079513 TTCATTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTTTTAATCTTTTAATTA
Found at i:44092036 original size:13 final size:13
Alignment explanation
Indices: 44092018--44092046 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
44092008 GCCCAAACTT
44092018 AATTACCCAACCC
1 AATTACCCAACCC
44092031 AATTACCCAACCC
1 AATTACCCAACCC
44092044 AAT
1 AAT
44092047 AAAACTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (13 bp):
AATTACCCAACCC
Found at i:44092199 original size:9 final size:9
Alignment explanation
Indices: 44092187--44092263 Score: 93
Period size: 9 Copynumber: 8.4 Consensus size: 9
44092177 AAATAAAAAA
44092187 AATTCGGGT
1 AATTCGGGT
44092196 AATTCGGGT
1 AATTCGGGT
* *
44092205 ATTTTTC-AGT
1 A--ATTCGGGT
*
44092215 AATTCGGTT
1 AATTCGGGT
*
44092224 AATTCGGTT
1 AATTCGGGT
44092233 AATTCGGGT
1 AATTCGGGT
44092242 AATTCGGGT
1 AATTCGGGT
44092251 AATTCGGGT
1 AATTCGGGT
44092260 AATT
1 AATT
44092264 TTTAACCAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
8 3 0.05
9 50 0.85
10 3 0.05
11 3 0.05
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.40
Consensus pattern (9 bp):
AATTCGGGT
Found at i:44092440 original size:12 final size:12
Alignment explanation
Indices: 44092423--44092447 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
44092413 AGTAATTTCG
44092423 GGTCGGTTAACC
1 GGTCGGTTAACC
44092435 GGTCGGTTAACC
1 GGTCGGTTAACC
44092447 G
1 G
44092448 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:44092804 original size:22 final size:23
Alignment explanation
Indices: 44092779--44092831 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
44092769 AAGGAACTTG
*
44092779 AATTGATATATAA-TAACTA-GAA
1 AATT-ATATAGAATTAACTATGAA
*
44092801 AATTATTTAGAATTAACTATGAA
1 AATTATATAGAATTAACTATGAA
44092824 AATGTATA
1 AAT-TATA
44092832 AATATTAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 6 0.24
22 10 0.40
23 6 0.24
24 3 0.12
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (23 bp):
AATTATATAGAATTAACTATGAA
Found at i:44097534 original size:14 final size:14
Alignment explanation
Indices: 44097515--44097545 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
44097505 ACAAATATCC
44097515 CAGATAAGAGTACA
1 CAGATAAGAGTACA
44097529 CAGATAAGAGTACA
1 CAGATAAGAGTACA
44097543 CAG
1 CAG
44097546 TCAATGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (14 bp):
CAGATAAGAGTACA
Found at i:44098325 original size:21 final size:21
Alignment explanation
Indices: 44098295--44098348 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
44098285 GCCATGTGCC
*
44098295 CGACCGTGTGCAA-GGTCTACA
1 CGACTGTGTG-AAGGGTCTACA
*
44098316 CGGCTGTGTGAAGGGTCTACA
1 CGACTGTGTGAAGGGTCTACA
44098337 CGACTGTGTGAA
1 CGACTGTGTGAA
44098349 AGAGGGACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (21 bp):
CGACTGTGTGAAGGGTCTACA
Found at i:44101473 original size:38 final size:38
Alignment explanation
Indices: 44101431--44101523 Score: 120
Period size: 37 Copynumber: 2.5 Consensus size: 38
44101421 ACCACTCCGA
* *
44101431 CCACCCTACACACCACAATTGGACTAT-AGTA-AGCCCAT
1 CCACCCTACACACCACAATAGGACCATGA-TAGA-CCCAT
*
44101469 CCACCCTACACACCA-TATAGGACCATGATAGACCCAT
1 CCACCCTACACACCACAATAGGACCATGATAGACCCAT
44101506 CCACCCTACACACCACAA
1 CCACCCTACACACCACAA
44101524 ATGTGGAACT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
37 30 0.62
38 18 0.38
ACGTcount: A:0.35, C:0.41, G:0.09, T:0.15
Consensus pattern (38 bp):
CCACCCTACACACCACAATAGGACCATGATAGACCCAT
Found at i:44102038 original size:21 final size:21
Alignment explanation
Indices: 44101997--44102038 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
44101987 GGAGAGTCTA
* *
44101997 GGTCGTGTGAAGGGTCTACAT
1 GGTCGTGTGAAGAGACTACAT
44102018 GGTCGTGTGAAAGAGAC-ACAT
1 GGTCGTGTG-AAGAGACTACAT
44102039 TACCGTGTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.24
Consensus pattern (21 bp):
GGTCGTGTGAAGAGACTACAT
Found at i:44102045 original size:21 final size:21
Alignment explanation
Indices: 44102021--44102069 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
44102011 TCTACATGGT
*
44102021 CGTGTGAAAGAGACACATTAC
1 CGTGTGAAAGAGACACATGAC
** *
44102042 CGTGTGGTAGAGACACATGCC
1 CGTGTGAAAGAGACACATGAC
44102063 CGTGTGA
1 CGTGTGA
44102070 GTAGCCTATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (21 bp):
CGTGTGAAAGAGACACATGAC
Found at i:44105550 original size:40 final size:40
Alignment explanation
Indices: 44105466--44105649 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
44105456 TTGAATGCTG
* * * *
44105466 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
44105505 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
44105546 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
44105586 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
44105626 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
44105650 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:44105603 original size:80 final size:81
Alignment explanation
Indices: 44105466--44105646 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
44105456 TTGAATGCTG
* *
44105466 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
44105530 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
44105546 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
44105607 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
44105626 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
44105647 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:44107441 original size:19 final size:18
Alignment explanation
Indices: 44107417--44107455 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
44107407 ATTGCGTGTT
*
44107417 TGAATAGAAATAAAATAAA
1 TGAATAGAAA-AAAAGAAA
*
44107436 TGAATAGGAAAAAAGAAA
1 TGAATAGAAAAAAAGAAA
44107454 TG
1 TG
44107456 GGAAACATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (18 bp):
TGAATAGAAAAAAAGAAA
Found at i:44115435 original size:37 final size:37
Alignment explanation
Indices: 44115393--44115463 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
44115383 GTAAGACTTG
44115393 TAGTTGTGTATATATTTGGTATTATGACTCTTGTCTA
1 TAGTTGTGTATATATTTGGTATTATGACTCTTGTCTA
44115430 TAGTTGTGTATATATTTGGTATTATGACTCTTGT
1 TAGTTGTGTATATATTTGGTATTATGACTCTTGT
44115464 ATGTATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.07, G:0.20, T:0.52
Consensus pattern (37 bp):
TAGTTGTGTATATATTTGGTATTATGACTCTTGTCTA
Found at i:44122876 original size:47 final size:47
Alignment explanation
Indices: 44122810--44123188 Score: 589
Period size: 47 Copynumber: 8.1 Consensus size: 47
44122800 GAAATGATAG
44122810 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
44122857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
44122904 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
44122951 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
44122998 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
44123045 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
44123092 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
44123138 CAGGGCCGAGTGGCCAACGTGATGGATGCGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
44123185 TAAG
1 TAAG
44123189 TCCCGAAGGG
Statistics
Matches: 309, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 40 0.13
47 269 0.87
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:44123363 original size:37 final size:37
Alignment explanation
Indices: 44123307--44123385 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
44123297 CCGAGCTCTA
* * *
44123307 AAGACCCGATGACTACGTGTGG-GAATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
44123344 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
44123381 AAGAC
1 AAGAC
44123386 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:44125725 original size:27 final size:27
Alignment explanation
Indices: 44125685--44125937 Score: 219
Period size: 27 Copynumber: 9.4 Consensus size: 27
44125675 GATTCGTGGG
* * *
44125685 AAAATGATTGAAATACCCTCAAAAGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
44125712 AAAATGACTAAAATACCC-CTGAAGGAT
1 AAAATGACTGAAATACCCTC-GAAGGGT
*
44125739 AAAATGACTGAAATACCC-CTGAAGGGG
1 AAAATGACTGAAATACCCTC-GAAGGGT
* * ** * *
44125766 AAATTTACCAAAATACCCCCAAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* * *
44125793 AGAATAATTGAAATA-CCTCTGAAGGGT
1 AAAATGACTGAAATACCCTC-GAAGGGT
** *
44125820 AAAATGACCAAAATACCCTTGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
44125847 AAAATGACCGAAATACCCCCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
44125874 AAAAT-AATCGAAATACTCTCGAAGGGT
1 AAAATGACT-GAAATACCCTCGAAGGGT
*
44125901 AAAATGACTGAAATACCCT-TATAGGGT
1 AAAATGACTGAAATACCCTCGA-AGGGT
44125928 AAAATGACTG
1 AAAATGACTG
44125938 TGATACCCCT
Statistics
Matches: 181, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 6 0.03
27 169 0.93
28 6 0.03
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.20
Consensus pattern (27 bp):
AAAATGACTGAAATACCCTCGAAGGGT
Found at i:44125817 original size:81 final size:81
Alignment explanation
Indices: 44125695--44125935 Score: 279
Period size: 81 Copynumber: 3.0 Consensus size: 81
44125685 AAAATGATTG
* * * * * * *
44125695 AAATACCCTCAAAAGGTAAAATGACTAAAATACCCCTGAAGGATAAAATGACTGAAATACCCCTG
1 AAATACCCCCAAAGGGTAAAATAATTGAAATACCTCTGAAGGGTAAAATGACTGAAATACCCCTG
* *
44125760 AAGGGGAAATTTACCA
66 AAGGGGAAAATGACCA
* ** *
44125776 AAATACCCCCAAAGGGTAGAATAATTGAAATACCTCTGAAGGGTAAAATGACCAAAATACCCTTG
1 AAATACCCCCAAAGGGTAAAATAATTGAAATACCTCTGAAGGGTAAAATGACTGAAATACCCCTG
* *
44125841 AAGGGTAAAATGACCG
66 AAGGGGAAAATGACCA
* *
44125857 AAATACCCCCGAAGGGTAAAATAATCGAAATA-CTCTCGAAGGGTAAAATGACTGAAATA-CCCT
1 AAATACCCCCAAAGGGTAAAATAATTGAAATACCTCT-GAAGGGTAAAATGACTGAAATACCCCT
* *
44125920 TATAGGGTAAAATGAC
65 GA-AGGGGAAAATGAC
44125936 TGTGATACCC
Statistics
Matches: 136, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
80 8 0.06
81 128 0.94
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (81 bp):
AAATACCCCCAAAGGGTAAAATAATTGAAATACCTCTGAAGGGTAAAATGACTGAAATACCCCTG
AAGGGGAAAATGACCA
Found at i:44126328 original size:28 final size:28
Alignment explanation
Indices: 44126288--44126350 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
44126278 CACTATACTG
* **
44126288 GTTACTATATTGGGCTAAGGCCTGCACT
1 GTTACTGTATTGGGCTAAGGCCCACACT
*
44126316 GTTACTGTTTTGGGCTAAGGCCCACACT
1 GTTACTGTATTGGGCTAAGGCCCACACT
44126344 G-TACTGT
1 GTTACTGT
44126351 GACTGTATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.33
Consensus pattern (28 bp):
GTTACTGTATTGGGCTAAGGCCCACACT
Found at i:44129365 original size:28 final size:28
Alignment explanation
Indices: 44129323--44129384 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
44129313 TATACAGTCG
* * *
44129323 CAGT-ACAATGTGGGCTTTAGCCCAAAA
1 CAGTAACAATGCGGGCCTTAACCCAAAA
* *
44129350 TAGTAACAATGCGGGCCTTAACCCAATA
1 CAGTAACAATGCGGGCCTTAACCCAAAA
44129378 CAGTAAC
1 CAGTAAC
44129385 CAGTACAGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.21
Consensus pattern (28 bp):
CAGTAACAATGCGGGCCTTAACCCAAAA
Found at i:44129784 original size:27 final size:27
Alignment explanation
Indices: 44129726--44129905 Score: 177
Period size: 27 Copynumber: 6.7 Consensus size: 27
44129716 TCATCTCCTA
** *
44129726 GGGGTATCACAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTTTG
*
44129753 AGGGTATTTCAGTCATTTTA-CCTTTCG
1 GGGGTATTTCAGTCATTTTACCCTTT-G
** *
44129780 GGGGTATTTTGGTCATTTTACCCTTTA
1 GGGGTATTTCAGTCATTTTACCCTTTG
** *
44129807 GGGGTATTTCCTTTA-TTT-CCCTTTCG
1 GGGGTATTTCAGTCATTTTACCCTTT-G
* *
44129833 GGGGTATTTTAGTCATTTTACCCTTCG
1 GGGGTATTTCAGTCATTTTACCCTTTG
**
44129860 AAGGTATTTCAGTCATTTTACCCTTTG
1 GGGGTATTTCAGTCATTTTACCCTTTG
* *
44129887 AGGGTATTTCGGTCATTTT
1 GGGGTATTTCAGTCATTTT
44129906 TCTACGAATT
Statistics
Matches: 124, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
25 6 0.05
26 18 0.15
27 90 0.73
28 10 0.08
ACGTcount: A:0.17, C:0.18, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTTTG
Found at i:44129848 original size:53 final size:54
Alignment explanation
Indices: 44129736--44129905 Score: 202
Period size: 54 Copynumber: 3.2 Consensus size: 54
44129726 GGGGTATCAC
*
44129736 AGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCTTTCGGGGGTATTTT
1 AGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCTTTCGGGGGTATTTT
* ** * *
44129790 GGTCATTTTACCCTTT-AGGGGTATTTCCTTTA-TTTCCCTTTCGGGGGTATTTT
1 AGTCATTTTACCCTTTGA-GGGTATTTCAGTCATTTTACCTTTCGGGGGTATTTT
* * * *
44129843 AGTCATTTTACCCTTCGAAGGTATTTCAGTCATTTTACCCTTT-GAGGGTATTTC
1 AGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTA-CCTTTCGGGGGTATTTT
*
44129897 GGTCATTTT
1 AGTCATTTT
44129906 TCTACGAATT
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
53 45 0.47
54 46 0.48
55 5 0.05
ACGTcount: A:0.16, C:0.18, G:0.19, T:0.46
Consensus pattern (54 bp):
AGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCTTTCGGGGGTATTTT
Found at i:44132914 original size:21 final size:21
Alignment explanation
Indices: 44132888--44132932 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
44132878 AACTTGCAGC
44132888 TCAGCCAACAAGCTACCATCA
1 TCAGCCAACAAGCTACCATCA
*
44132909 TCAGCCAATAAGCTACCATCA
1 TCAGCCAACAAGCTACCATCA
44132930 TCA
1 TCA
44132933 AACAAGCTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.36, G:0.09, T:0.18
Consensus pattern (21 bp):
TCAGCCAACAAGCTACCATCA
Found at i:44132939 original size:18 final size:19
Alignment explanation
Indices: 44132893--44132940 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 19
44132883 GCAGCTCAGC
44132893 CAACAAGCTACCATCATCA
1 CAACAAGCTACCATCATCA
*
44132912 GCCAATAAGCTACCATCATCA
1 --CAACAAGCTACCATCATCA
44132933 -AACAAGCT
1 CAACAAGCT
44132941 GAGATGAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
21 18 0.72
ACGTcount: A:0.42, C:0.33, G:0.08, T:0.17
Consensus pattern (19 bp):
CAACAAGCTACCATCATCA
Found at i:44149132 original size:25 final size:25
Alignment explanation
Indices: 44149096--44149147 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
44149086 TCTGAGTAGG
*
44149096 GTCACACACCCGTGTGCCAGGCCGT
1 GTCACACACCCGTGTGCCAGGCAGT
*
44149121 GTCACACGCCCGTGTGCCAGGCAGT
1 GTCACACACCCGTGTGCCAGGCAGT
44149146 GT
1 GT
44149148 GCTACCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.15, C:0.37, G:0.31, T:0.17
Consensus pattern (25 bp):
GTCACACACCCGTGTGCCAGGCAGT
Found at i:44150235 original size:35 final size:35
Alignment explanation
Indices: 44150167--44150329 Score: 148
Period size: 35 Copynumber: 4.6 Consensus size: 35
44150157 AGTACATCGA
* * *
44150167 TAATCCAACCGAAATACACCAAATGCTCATAAGAGC
1 TAATCCATCCGAAACACACC-AATGCTCGTAAGAGC
* *
44150203 CAATCCATCCGAAACACACCAATGCTCGTAAGAGT
1 TAATCCATCCGAAACACACCAATGCTCGTAAGAGC
* * * * *
44150238 TAATCCCTCCAAAACACACCGATGCTCAG-AACAGT
1 TAATCCATCCGAAACACACCAATGCTC-GTAAGAGC
* * * *
44150273 TAATCCCTCCTAAACATACCAATGCTCGAAAGAGC
1 TAATCCATCCGAAACACACCAATGCTCGTAAGAGC
* * *
44150308 TAGTCCAACTGAAACACACCAA
1 TAATCCATCCGAAACACACCAA
44150330 AACAAATAGT
Statistics
Matches: 104, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
34 1 0.01
35 85 0.82
36 18 0.17
ACGTcount: A:0.40, C:0.31, G:0.12, T:0.17
Consensus pattern (35 bp):
TAATCCATCCGAAACACACCAATGCTCGTAAGAGC
Found at i:44162803 original size:13 final size:13
Alignment explanation
Indices: 44162785--44162819 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
44162775 GCATGTCTCT
*
44162785 CACATGGCTTAGC
1 CACATGGCCTAGC
44162798 CACATGGCCTAGC
1 CACATGGCCTAGC
*
44162811 CACACGGCC
1 CACATGGCC
44162820 GTGTGATCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.14
Consensus pattern (13 bp):
CACATGGCCTAGC
Found at i:44170205 original size:44 final size:44
Alignment explanation
Indices: 44170142--44170365 Score: 151
Period size: 44 Copynumber: 4.8 Consensus size: 44
44170132 GATTTGTTGT
* * *
44170142 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGG
* * *
44170186 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-----C-----TGGTGG
* *** * ** * * * *
44170240 CTTTAATCAATTCCACTACAACGCCAGGGAAATAAGATTCGCTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-GGTGG
*
44170285 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGG
* * * *
44170329 CTTCACTCTGCACCACTGCAAGTTCAGGAAGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
44170366 TCCGCCATAA
Statistics
Matches: 133, Mismatches: 36, Indels: 22
0.70 0.19 0.12
Matches are distributed among these distances:
44 70 0.53
45 30 0.23
49 1 0.01
54 32 0.24
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGTGG
Found at i:44170209 original size:143 final size:143
Alignment explanation
Indices: 44170010--44170427 Score: 611
Period size: 143 Copynumber: 2.9 Consensus size: 143
44170000 TCAATATACC
* * ** * * * *
44170010 CCACTGCAACTTCAGGGGGATAAGATTTGGTAACTTCAACCTACTCCACTGTAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGA-CTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGA
* ** * *
44170075 TAAGGTTTGCCATAATTTGTAGCTTTAATTTGTTCCACTGCAATGCCAGGGAAATAAGATTTGTT
65 TAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCGTT
44170140 GTCTTCAGTCTGCT
130 GTCTTCAGTCTGCT
* *
44170154 CCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGAT
1 CCACTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGAT
** * * *
44170219 AAGATCCGCCATAATTTGTAGCTTTAATCAATTCCACTACAACGCCAGGGAAATAAGATTCGCTG
66 AAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCGTTG
44170284 TCTTCAGTCTGCT
131 TCTTCAGTCTGCT
* * *
44170297 CCACTGCAACTTCAGGGAGATAAGACTGGTGGCTTCACTCTGCACCACTGCAAGTTCAGGAAGAT
1 CCACTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGAT
*
44170362 AAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGTTG
66 AAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCGTTG
44170427 T
131 T
44170428 AATGACTTCA
Statistics
Matches: 243, Mismatches: 31, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
143 221 0.91
144 22 0.09
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (143 bp):
CCACTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGAT
AAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCGTTG
TCTTCAGTCTGCT
Found at i:44172193 original size:1 final size:1
Alignment explanation
Indices: 44172183--44172308 Score: 54
Period size: 1 Copynumber: 126.0 Consensus size: 1
44172173 CCGGTAGAGG
* * * * * * * ** * * * *
44172183 TTTTTATTTTTTTGTTTTTTGTTTTTCTGTTCTTTGTTTAGTTTTTTGTTTTTTGTTCTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * *
44172248 TTTTGTTTTTTTTTTTTGTTTTTTGTTTTTTGTTTTGTCTTTTTTGTTATTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
44172309 CTTTCCTCTA
Statistics
Matches: 82, Mismatches: 43, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 82 1.00
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (1 bp):
T
Found at i:44172233 original size:34 final size:32
Alignment explanation
Indices: 44172185--44172308 Score: 125
Period size: 31 Copynumber: 4.0 Consensus size: 32
44172175 GGTAGAGGTT
*
44172185 TTTATTTTTTTGTTTTTTGTTTTTCTGTTCTTTG
1 TTTAGTTTTTTGTTTTTTGTTTTT-TGTT-TTTG
*
44172219 TTTAGTTTTTTGTTTTTTGTTCTTTG-TTTT-
1 TTTAGTTTTTTGTTTTTTGTTTTTTGTTTTTG
44172249 TTT-GTTTTTT-TTTTTTGTTTTTTGTTTTTTG
1 TTTAGTTTTTTGTTTTTTGTTTTTTG-TTTTTG
* * * *
44172280 TTTTG-TCTTT-TTTGTTATTTTTTGTTTTT
1 TTTAGTTTTTTGTTTTTTGTTTTTTGTTTTT
44172309 CTTTCCTCTA
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
28 13 0.16
29 7 0.09
30 12 0.15
31 22 0.28
32 2 0.03
33 2 0.03
34 22 0.28
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.82
Consensus pattern (32 bp):
TTTAGTTTTTTGTTTTTTGTTTTTTGTTTTTG
Found at i:44172239 original size:41 final size:38
Alignment explanation
Indices: 44172190--44172308 Score: 156
Period size: 35 Copynumber: 3.1 Consensus size: 38
44172180 AGGTTTTTAT
44172190 TTTTTTGTTTTTTGTTTTTCTGTTCTTTGTTTAGTTTTTTG
1 TTTTTTGTTTTTTGTTTTTCT-TT-TTTGTTTA-TTTTTTG
* *
44172231 TTTTTTGTTCTTTGTTTTT-TTGTTT-TTT-TTTTTTG
1 TTTTTTGTTTTTTGTTTTTCTTTTTTGTTTATTTTTTG
44172266 TTTTTTGTTTTTTGTTTTGTCTTTTTTG-TTATTTTTTG
1 TTTTTTGTTTTTTGTTTT-TCTTTTTTGTTTATTTTTTG
44172304 TTTTT
1 TTTTT
44172309 CTTTCCTCTA
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
35 24 0.34
36 1 0.01
37 10 0.14
38 15 0.21
39 1 0.01
40 1 0.01
41 18 0.26
ACGTcount: A:0.02, C:0.03, G:0.13, T:0.82
Consensus pattern (38 bp):
TTTTTTGTTTTTTGTTTTTCTTTTTTGTTTATTTTTTG
Found at i:44172255 original size:49 final size:49
Alignment explanation
Indices: 44172193--44172313 Score: 140
Period size: 49 Copynumber: 2.4 Consensus size: 49
44172183 TTTTTATTTT
* *
44172193 TTTG-TTTTTTGTTTTTCTGTTCTTTG-TTTAGTTTTTTGTTTTTTGTTC
1 TTTGTTTTTTTGTTTTTCT-TTCTTTGTTTTAGTTTTTTGTTTTGTCTTC
* * *
44172241 TTTGTTTTTTTGTTTTT-TTTTTTTGTTTTTTGTTTTTTGTTTTGTCTTT
1 TTTGTTTTTTTGTTTTTCTTTCTTTG-TTTTAGTTTTTTGTTTTGTCTTC
44172290 TTTGTTATTTTTTGTTTTTCTTTC
1 TTTG-T-TTTTTTGTTTTTCTTTC
44172314 CTCTACTACT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
47 6 0.10
48 5 0.08
49 34 0.56
50 1 0.02
51 12 0.20
52 3 0.05
ACGTcount: A:0.02, C:0.05, G:0.12, T:0.81
Consensus pattern (49 bp):
TTTGTTTTTTTGTTTTTCTTTCTTTGTTTTAGTTTTTTGTTTTGTCTTC
Found at i:44172308 original size:7 final size:7
Alignment explanation
Indices: 44172190--44172300 Score: 129
Period size: 7 Copynumber: 15.9 Consensus size: 7
44172180 AGGTTTTTAT
44172190 TTTTTTG
1 TTTTTTG
44172197 TTTTTTG
1 TTTTTTG
44172204 TTTTTCTG
1 TTTTT-TG
*
44172212 TTCTTTG
1 TTTTTTG
*
44172219 --TTTAG
1 TTTTTTG
44172224 TTTTTTG
1 TTTTTTG
44172231 TTTTTTG
1 TTTTTTG
*
44172238 TTCTTTG
1 TTTTTTG
44172245 TTTTTTTG
1 -TTTTTTG
44172253 TTTTTT-
1 TTTTTTG
44172259 TTTTTTG
1 TTTTTTG
44172266 TTTTTTG
1 TTTTTTG
44172273 TTTTTTG
1 TTTTTTG
* *
44172280 TTTTGTC
1 TTTTTTG
44172287 TTTTTTG
1 TTTTTTG
44172294 TTATTTT
1 TT-TTTT
44172301 TTGTTTTTCT
Statistics
Matches: 88, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
5 3 0.03
6 6 0.07
7 63 0.72
8 16 0.18
ACGTcount: A:0.02, C:0.04, G:0.13, T:0.82
Consensus pattern (7 bp):
TTTTTTG
Found at i:44180466 original size:12 final size:14
Alignment explanation
Indices: 44180437--44180468 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
44180427 GTTTGGGATA
44180437 GGGTTTGGTAATTT
1 GGGTTTGGTAATTT
44180451 GGGTTT-GTAA-TT
1 GGGTTTGGTAATTT
44180463 GGGTTT
1 GGGTTT
44180469 TTTGTATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 4 0.22
14 6 0.33
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (14 bp):
GGGTTTGGTAATTT
Found at i:44183712 original size:13 final size:14
Alignment explanation
Indices: 44183694--44183722 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
44183684 AAAAATGAAC
44183694 AAAATGA-ATAGGA
1 AAAATGACATAGGA
44183707 AAAATGACATAGGA
1 AAAATGACATAGGA
44183721 AA
1 AA
44183723 TATTCAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.62, C:0.03, G:0.21, T:0.14
Consensus pattern (14 bp):
AAAATGACATAGGA
Found at i:44184836 original size:27 final size:27
Alignment explanation
Indices: 44184779--44184839 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
44184769 GGCATCCTTT
* *
44184779 GATAGTCTGATGGGACAATAATCACAG
1 GATAGTCTGATGGGACAATAAACACAA
* *
44184806 GATAGTCT-ATTGGGACACTAAACATAA
1 GATAGTCTGA-TGGGACAATAAACACAA
44184833 GATAGTC
1 GATAGTC
44184840 CACCGGGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (27 bp):
GATAGTCTGATGGGACAATAAACACAA
Found at i:44188847 original size:13 final size:14
Alignment explanation
Indices: 44188829--44188870 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
44188819 GCTAGGGAGG
44188829 TTTTGACAATAA-A
1 TTTTGACAATAATA
*
44188842 TTTTGAAAATAATA
1 TTTTGACAATAATA
*
44188856 TTTTCACAATTAATA
1 TTTTGACAA-TAATA
44188871 AGATAAGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 11 0.46
14 8 0.33
15 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (14 bp):
TTTTGACAATAATA
Found at i:44195665 original size:12 final size:12
Alignment explanation
Indices: 44195648--44195673 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44195638 AGGATATGCA
44195648 ATCTTAGATATG
1 ATCTTAGATATG
44195660 ATCTTAGATATG
1 ATCTTAGATATG
44195672 AT
1 AT
44195674 ATTGCAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATCTTAGATATG
Found at i:44195700 original size:19 final size:20
Alignment explanation
Indices: 44195660--44195729 Score: 88
Period size: 20 Copynumber: 3.4 Consensus size: 20
44195650 CTTAGATATG
44195660 ATCTTAGATATGATATTGCA
1 ATCTTAGATATGATATTGCA
44195680 ATCTTAGATATGATA-TGCA
1 ATCTTAGATATGATATTGCA
* *
44195699 ATCTTAGAAGATATGATTTTGTA
1 ATCTT---AGATATGATATTGCA
44195722 ATCTTAGA
1 ATCTTAGA
44195730 GATTTAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.20
20 18 0.41
22 9 0.20
23 8 0.18
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (20 bp):
ATCTTAGATATGATATTGCA
Found at i:44195732 original size:22 final size:22
Alignment explanation
Indices: 44195665--44195732 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
44195655 ATATGATCTT
*
44195665 AGATATGATATTGCAATCTT--
1 AGATATGATTTTGCAATCTTAG
*
44195685 AGATATGA-TATGCAATCTTAG
1 AGATATGATTTTGCAATCTTAG
*
44195706 AAGATATGATTTTGTAATCTTAG
1 -AGATATGATTTTGCAATCTTAG
44195729 AGAT
1 AGAT
44195733 TTAATTTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 9 0.22
20 8 0.20
22 12 0.30
23 11 0.28
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATTTTGCAATCTTAG
Found at i:44196021 original size:20 final size:20
Alignment explanation
Indices: 44195996--44196066 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
44195986 CGATTTAGTC
44195996 TTTTATTATTTATTATTTAT
1 TTTTATTATTTATTATTTAT
*
44196016 TTTTATTAAATTTGA-T-TTTCT
1 TTTTATT--ATTT-ATTATTTAT
* *
44196037 TGTTATTACGTTATTA-TTAT
1 TTTTATTA-TTTATTATTTAT
44196057 TTTTATTATT
1 TTTTATTATT
44196067 ATCATTATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 13
0.67 0.10 0.22
Matches are distributed among these distances:
19 3 0.08
20 20 0.51
21 10 0.26
22 5 0.13
23 1 0.03
ACGTcount: A:0.24, C:0.03, G:0.04, T:0.69
Consensus pattern (20 bp):
TTTTATTATTTATTATTTAT
Found at i:44196055 original size:3 final size:3
Alignment explanation
Indices: 44196047--44196085 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
44196037 TGTTATTACG
* * *
44196047 TTA TTA TTA TTT TTA TTA TTA TCA TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
44196086 CCATATATAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:44196240 original size:17 final size:17
Alignment explanation
Indices: 44196220--44196254 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
44196210 TATATGCATA
*
44196220 TATATACATTTACATTT
1 TATATACATATACATTT
44196237 TATATACATATACATTT
1 TATATACATATACATTT
44196254 T
1 T
44196255 TTATTTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:44196355 original size:19 final size:18
Alignment explanation
Indices: 44196331--44196379 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
44196321 GTATGTTTTC
44196331 TTATATTAT-TCTTCATAAA
1 TTATATTATAT-TTC-TAAA
44196350 TTATATATATATTTCTAAA
1 TTATAT-TATATTTCTAAA
44196369 TTA-ATTA-ATTT
1 TTATATTATATTT
44196380 TAATATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 4 0.14
17 2 0.07
18 2 0.07
19 13 0.46
20 6 0.21
21 1 0.04
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATATTATATTTCTAAA
Found at i:44196451 original size:32 final size:32
Alignment explanation
Indices: 44196392--44196475 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 32
44196382 ATATATGTAA
44196392 TTATTATTTGTTTATATATATAAATATATATG
1 TTATTATTTGTTTATATATATAAATATATATG
* * *
44196424 TTATTATCTTTTTTATA-ATCTATATATATATG
1 TTATTAT-TTGTTTATATATATAAATATATATG
*
44196456 -TATATAATT-TTTATATATAT
1 TTAT-TATTTGTTTATATATAT
44196476 GTACATGTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
30 6 0.14
31 8 0.18
32 22 0.50
33 8 0.18
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (32 bp):
TTATTATTTGTTTATATATATAAATATATATG
Found at i:44196461 original size:21 final size:21
Alignment explanation
Indices: 44196437--44196478 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
44196427 TTATCTTTTT
44196437 TATAATCTATATATATATGTA
1 TATAATCTATATATATATGTA
* *
44196458 TATAATTTTTATATATATGTA
1 TATAATCTATATATATATGTA
44196479 CATGTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.52
Consensus pattern (21 bp):
TATAATCTATATATATATGTA
Found at i:44201729 original size:44 final size:44
Alignment explanation
Indices: 44201657--44202192 Score: 458
Period size: 44 Copynumber: 12.2 Consensus size: 44
44201647 GGAGGTCCTA
* *
44201657 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATGCAGATCTTG
* * * *
44201700 TCTTCCCATATTGGTGGCGGAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAG-ATGCAGATCTTG
* * ** * * *
44201745 TCTTCATGTATTGG-CATGAAGTAGATTC-AAGATAGTAGATCCTA
1 TCTTCCTATATTGGTCGCGAAGTAGA-TCGAAGAT-GCAGATCTTG
* *
44201789 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATGCAGATCTTG
* * * * * * * *
44201832 TCTTCCCATTTTGGTGGCGGAGTATATCGAAGAAAGTAGATTTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAG-ATGCAGATCTTG
* * * * *
44201877 TCTTCATGTATTGG-CGTGAAGCAGATCGAAGATAGCAGATCCTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGAT-GCAGATCTTG
* *
44201921 TCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATGCAGATCTTG
* * * *
44201965 TCTTCCTATACTGGTGGCGAAGTGGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAG-ATGCAGATCTTG
* * ** ** *
44202010 TCTTCATGTATTGG-CATGAAGTAGATCGAAGATAGCAGGCCATG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGAT-GCAGATCTTG
** * *
44202054 TCTTCCTATATTGGT-AAGAAGTGGATCGAAGATGTAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATGCAGATCTTG
* * * *
44202097 TCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAG-ATGCAGATCTTG
* * **
44202142 TCTTCATGTATTGG-CATGAAGTAGATCGAAGATAGCAGATCTTG
1 TCTTCCTATATTGGTCGCGAAGTAGATCGAAGAT-GCAGATCTTG
44202186 TCTTCCT
1 TCTTCCT
44202193 GCACTGACAG
Statistics
Matches: 386, Mismatches: 91, Indels: 31
0.76 0.18 0.06
Matches are distributed among these distances:
43 61 0.16
44 225 0.58
45 100 0.26
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
TCTTCCTATATTGGTCGCGAAGTAGATCGAAGATGCAGATCTTG
Found at i:44201878 original size:132 final size:132
Alignment explanation
Indices: 44201640--44202192 Score: 876
Period size: 132 Copynumber: 4.2 Consensus size: 132
44201630 GCAGATCAGT
* * *
44201640 GAAGATAGGAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* *
44201705 CCATATTGGTGGCGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
44201770 TTC
131 -TC
* *
44201773 -AAGATAGTAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
** * * * * * *
44201837 CCATTTTGGTGGCGGAGTATATCGAAGAAAGTAGATTTTGTCTTCATGTATTGGCGTGAAGCAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
44201902 TC
131 TC
44201904 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
* *
44201969 CCTATACTGGTGGCGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
44202034 ATC
130 ATC
* * *
44202037 GAAGATAGCAG-GCCATGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGTAGATCTTGTCTT
1 GAAGATAGCAGATCC-TGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTT
44202101 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
44202166 ATC
130 ATC
*
44202169 GAAGATAGCAGATCTTGTCTTCCT
1 GAAGATAGCAGATCCTGTCTTCCT
44202193 GCACTGACAG
Statistics
Matches: 389, Mismatches: 27, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
131 2 0.01
132 269 0.69
133 118 0.30
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (132 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
TC
Found at i:44202147 original size:265 final size:264
Alignment explanation
Indices: 44201640--44202192 Score: 876
Period size: 265 Copynumber: 2.1 Consensus size: 264
44201630 GCAGATCAGT
* * *
44201640 GAAGATAGGAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* *
44201705 CCATATTGGTGGCGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
* * *
44201770 TTCAAGATAGTAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCT
131 TTCAAGATAGCAGAGCCTATCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTCT
** * * * * *
44201835 TCCCATTTTGGTGGCGGAGTATATCGAAGAAAGTAGATTTTGTCTTCATGTATTGGCGTGAAGCA
196 TCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGCA
44201900 GATC
261 GATC
44201904 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
* *
44201969 CCTATACTGGTGGCGAAGTGGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAG
* *
44202034 A-TCGAAGATAGCAG-GCCATGTCTTCCTATATTGGTAAGAAGTGGATCGAAGATGTAGATCTTG
130 ATTC-AAGATAGCAGAGCC-TATCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTG
44202097 TCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAA
193 TCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAA
*
44202162 GTAGATC
258 GCAGATC
*
44202169 GAAGATAGCAGATCTTGTCTTCCT
1 GAAGATAGCAGATCCTGTCTTCCT
44202193 GCACTGACAG
Statistics
Matches: 265, Mismatches: 21, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
264 35 0.13
265 230 0.87
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (264 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGA
TTCAAGATAGCAGAGCCTATCTTCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTCT
TCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGCA
GATC
Found at i:44202284 original size:88 final size:88
Alignment explanation
Indices: 44202173--44202402 Score: 334
Period size: 88 Copynumber: 2.6 Consensus size: 88
44202163 TAGATCGAAG
* *
44202173 ATAGCAGATCTTGTCTTCCTGCACTGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
44202238 GGTTGCAGCGGCGCAAGCTAAAA
66 GGTTGCAGCGGAGCAAGCTAAAA
* * *
44202261 ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGTAGATCAAAGACACCAGCCTTGCCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
44202326 GGTTGCAGCGGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAAGCTAAAA
* * * * * *
44202349 ATAGCAAATCCTACCTTCCTGCACCGACAGCGAAGCAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACACCAGCC
44202403 CTATCTCCCT
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 126 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAAGCTAAAA
Found at i:44202298 original size:265 final size:262
Alignment explanation
Indices: 44201729--44202306 Score: 610
Period size: 265 Copynumber: 2.2 Consensus size: 262
44201719 GAGTAGATCG
* * * * * * * *
44201729 AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATTC-AAGATAGTAGATCC-TATCT
1 AAGAAAGCAGATCTTGCCTTCATGCACTGACACGAAGTAGA-TCAAAGATAGCAG-GCCATGTCT
* ** * *
44201792 TCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATTTTGGTGGCGGAGTAT
64 TCCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAG
* * *
44201857 ATCGAAGAAAGTAGATTTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGATCCTGT
129 ATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGCAGATCGAAGATAGCAGATCCTGT
* * ** ** ** * * * * *
44201922 CTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATACTGGTGGCGAAG
194 CTTCCTACACTGACAGCGAAGCAGATCGAAGAACCAGACCTTGCCTCCCTAGACTGGCGGCGAAG
44201987 TGGATC
259 T-GA-C
* * * * * *
44201993 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGGCCATGTCTT
1 -AAGAAAGCAGATCTTGCCTTCATGCACTGACACGAAGTAGATCAAAGATAGCAGGCCATGTCTT
*
44202058 CCTATATTGGTAAGAAGTGGATCGAAGATGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGA
65 CCTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGA
* *
44202123 TCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAGATCTTGTC
130 TCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGCAGATCGAAGATAGCAGATCCTGTC
* * * **
44202188 TTCCTGCACTGACAGTGAAGCAGATCGAAGACACCAG-CCTTGCCTCCCTGGGTTGCAGCGGCGC
195 TTCCTACACTGACAGCGAAGCAGATCGAAGA-ACCAGACCTTGCCTCCCTAGACTG--GCGGCG-
44202252 AAGCT-A-
256 AAG-TGAC
*
44202258 AA-AATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGTAGATCAAAGA
1 AAGAA-AGCAGATCTTGCCTTCATGCACTGACA-CGAAGTAGATCAAAGA
44202307 CACCAGCCTT
Statistics
Matches: 265, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
263 2 0.01
264 28 0.11
265 222 0.84
266 3 0.01
267 6 0.02
268 3 0.01
269 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (262 bp):
AAGAAAGCAGATCTTGCCTTCATGCACTGACACGAAGTAGATCAAAGATAGCAGGCCATGTCTTC
CTATATTGGTAAGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGAT
CGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGCAGATCGAAGATAGCAGATCCTGTCT
TCCTACACTGACAGCGAAGCAGATCGAAGAACCAGACCTTGCCTCCCTAGACTGGCGGCGAAGTG
AC
Found at i:44202432 original size:88 final size:88
Alignment explanation
Indices: 44202187--44202435 Score: 248
Period size: 88 Copynumber: 2.8 Consensus size: 88
44202177 CAGATCTTGT
* * * * * * **
44202187 CTTCCTGCACTGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGCGC
1 CTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCCTACCTCCCTGGGTAGCAGCGGAAC
* * * * *
44202252 AAGCTAAAAATAGCAGATCTTGC
66 AGGTTAAAAATAGCAAATCCTAC
* * * * * * *
44202275 CTTCCTGCACTGACAGCGAAGTAGATCAAAGACACCAGCCTTGCCTCCTTGGGTTGCAGCGGAGC
1 CTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCCTACCTCCCTGGGTAGCAGCGGAAC
44202340 AGGTTAAAAATAGCAAATCCTAC
66 AGGTTAAAAATAGCAAATCCTAC
* * * * *
44202363 CTTCCTGCACCGACAGCGAAGCAGATCGATGACCCCAGCCCTATCTCCCT-GGTCAGCAGTGGAA
1 CTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCCTACCTCCCTGGGT-AGCAGCGGAA
*
44202427 TAGGTTAAA
65 CAGGTTAAA
44202436 GATTGTGAAT
Statistics
Matches: 137, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
87 3 0.02
88 134 0.98
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (88 bp):
CTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCCTACCTCCCTGGGTAGCAGCGGAAC
AGGTTAAAAATAGCAAATCCTAC
Found at i:44202465 original size:44 final size:44
Alignment explanation
Indices: 44202402--44202611 Score: 271
Period size: 44 Copynumber: 4.8 Consensus size: 44
44202392 TGACCCCAGC
*
44202402 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
44202446 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * * * *
44202490 TCTATCTCCTTGGGCAGTAGTGGAATAGATTGAAGATTGTTG-GT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-TGAAT
*
44202534 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAATATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * *
44202578 GCTATCTCCCTGAG-AAGTAGTGGAGTAGGTTGAA
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
44202612 AATAGCAAAT
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
43 2 0.01
44 139 0.97
45 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:44203431 original size:22 final size:23
Alignment explanation
Indices: 44203403--44203447 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
44203393 ATGCAATATT
44203403 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
44203425 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
44203448 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:44203730 original size:7 final size:7
Alignment explanation
Indices: 44203718--44203747 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
44203708 TTAGTCTTTT
44203718 TTATTTA
1 TTATTTA
44203725 TTATTTA
1 TTATTTA
44203732 TTATTTA
1 TTATTTA
44203739 TTA-TTA
1 TTATTTA
44203745 TTA
1 TTA
44203748 AATTTGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTATTTA
Found at i:44203735 original size:3 final size:3
Alignment explanation
Indices: 44203722--44203818 Score: 67
Period size: 3 Copynumber: 33.0 Consensus size: 3
44203712 TCTTTTTTAT
* * * *
44203722 TTA TTA TTTA TTA TTTA TTA TTA TTA -AA TT- TGA TT- TTC TTG TTA
1 TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
44203766 TTA -AA TAA TTA TTA TTG TTA TTA TTA TCA TTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
44203813 TTA TTA
1 TTA TTA
44203819 CTATATATAC
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
2 5 0.07
3 63 0.85
4 6 0.08
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:44203735 original size:14 final size:13
Alignment explanation
Indices: 44203718--44203817 Score: 55
Period size: 14 Copynumber: 7.4 Consensus size: 13
44203708 TTAGTCTTTT
44203718 TTATTTATTATTTA
1 TTATTTATTA-TTA
44203732 TTATTTATTATTA
1 TTATTTATTATTA
*
44203745 TTAAATTTGATT-TTC
1 TT--ATTT-ATTATTA
* *
44203760 TT-GTTATTAAATAA
1 TTATTTATT--ATTA
*
44203774 TTA-TTATTGTTA
1 TTATTTATTATTA
44203786 TTATTATCATTATTA
1 TTATT-T-ATTATTA
*
44203801 TTA-TTATAATTA
1 TTATTTATTATTA
44203813 TTATT
1 TTATT
44203818 ACTATATATA
Statistics
Matches: 67, Mismatches: 8, Indels: 23
0.68 0.08 0.23
Matches are distributed among these distances:
11 3 0.04
12 16 0.24
13 8 0.12
14 20 0.30
15 17 0.25
16 3 0.04
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:44203979 original size:17 final size:17
Alignment explanation
Indices: 44203948--44203991 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
44203938 CATAACTTTT
*
44203948 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
44203964 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
44203981 ATATACATTTT
1 ATATACATTTT
44203992 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:44204105 original size:39 final size:38
Alignment explanation
Indices: 44204004--44204105 Score: 96
Period size: 39 Copynumber: 2.6 Consensus size: 38
44203994 ATTTCCTAAC
* * *
44204004 TTTTATATGCATATATATACTTTTATATTTTTTTGATAAA
1 TTTTATAT--ATATATATATTTTTATATTTTGTTCATAAA
* ** * *
44204044 TATGTATATACGTATGTTTTTTTATATTATTGTTCATAAA
1 T-TTTATATATATATATATTTTTATATT-TTGTTCATAAA
44204084 TTTTATATATATATATATTTTT
1 TTTTATATATATATATATTTTT
44204106 CTAAGTTAAT
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
39 30 0.64
40 11 0.23
41 6 0.13
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (38 bp):
TTTTATATATATATATATTTTTATATTTTGTTCATAAA
Found at i:44204185 original size:30 final size:30
Alignment explanation
Indices: 44204151--44204207 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
44204141 TATTTGTTTA
*
44204151 TATATATATGTA-ATTATCTTTTTTATAATC
1 TATATATATGTATATAAT-TTTTTTATAATC
44204181 TATATATATGTATATAATTTTTTTATA
1 TATATATATGTATATAATTTTTTTATA
44204208 TATGTACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (30 bp):
TATATATATGTATATAATTTTTTTATAATC
Found at i:44212131 original size:12 final size:12
Alignment explanation
Indices: 44212114--44212139 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44212104 CGTTTGCCAC
44212114 CAAATCACTGAA
1 CAAATCACTGAA
44212126 CAAATCACTGAA
1 CAAATCACTGAA
44212138 CA
1 CA
44212140 TAACAGGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15
Consensus pattern (12 bp):
CAAATCACTGAA
Found at i:44216334 original size:170 final size:167
Alignment explanation
Indices: 44216011--44216341 Score: 423
Period size: 170 Copynumber: 2.0 Consensus size: 167
44216001 CTTCATTTTC
* * *
44216011 TTCTTAACGGCAAATTGTCTAGTTCACTGATGATGCATAAAAATATACGGTGTCACTTTATTTTG
1 TTCTTAACGACAAATTATCTAGTTCACTGATAATGCATAAAAATATACGGTGTCACTTTATTTTG
* * * * * *
44216076 TTTTTGGTAAATTAAAATATGGAAAACTTTACCTCCAAGAAAGCACTAATGTTGGAGAATCTTAG
66 ATTTTAGTAAATAAAAATATGAAAAACTTCACCTCCAAAAAAGCACTAATGTTGGAGAATCTTAG
44216141 GCTACCTAGTCAAAGTTGAGGCCCAAAACCATTTTTGAT
131 G--ACCTAGTCAAAGTTGAGGCCCAAAACCATTTTTGAT
* * * * *
44216180 TTCTCTAACGACAAATTATTTAGTTCATTGATAATGCATAAAATTATAGGGTGTCACTCTATTTT
1 TTCT-TAACGACAAATTATCTAGTTCACTGATAATGCATAAAAATATACGGTGTCACT-T-TATT
** *
44216245 ACTTGATTTTAGTGGATAAAAATATTAAAAACTTCACCTCCAAAAAAGCACTAATGTTGGAGAAT
63 --TTGATTTTAGTAAATAAAAATATGAAAAACTTCACCTCCAAAAAAGCACTAATGTTGGAGAAT
*
44216310 TTTAGG-CC-AGTCAAAGTTGAGGCCCAAAACCA
126 CTTAGGACCTAGTCAAAGTTGAGGCCCAAAACCA
44216342 CATCTGGTTC
Statistics
Matches: 139, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
169 4 0.03
170 70 0.50
171 3 0.02
172 3 0.02
174 59 0.42
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (167 bp):
TTCTTAACGACAAATTATCTAGTTCACTGATAATGCATAAAAATATACGGTGTCACTTTATTTTG
ATTTTAGTAAATAAAAATATGAAAAACTTCACCTCCAAAAAAGCACTAATGTTGGAGAATCTTAG
GACCTAGTCAAAGTTGAGGCCCAAAACCATTTTTGAT
Found at i:44227504 original size:21 final size:21
Alignment explanation
Indices: 44227462--44227510 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
44227452 CCTTGGCCTC
*
44227462 TCCTTTTCTTTTTTTCTTTTT
1 TCCTTTTCTTTTTTTCTGTTT
44227483 TCCTTTTCTCTTTTTT-TGTTT
1 TCCTTTTCT-TTTTTTCTGTTT
*
44227504 TCATTTT
1 TCCTTTT
44227511 GACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (21 bp):
TCCTTTTCTTTTTTTCTGTTT
Found at i:44227505 original size:15 final size:15
Alignment explanation
Indices: 44227465--44227498 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
44227455 TGGCCTCTCC
* *
44227465 TTTTCTTTTTTTCTT
1 TTTTCCTTTTCTCTT
44227480 TTTTCCTTTTCTCTT
1 TTTTCCTTTTCTCTT
44227495 TTTT
1 TTTT
44227499 TGTTTTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTCCTTTTCTCTT
Found at i:44227510 original size:6 final size:6
Alignment explanation
Indices: 44227496--44227534 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
44227486 TTTTCTCTTT
* *
44227496 TTTTG- TTTTCA TTTTGA CTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
44227535 TCTTCTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.13, C:0.05, G:0.13, T:0.69
Consensus pattern (6 bp):
TTTTGA
Done.