Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 147 of 228
Found at i:44232533 original size:3 final size:3
Alignment explanation
Indices: 44232518--44232683 Score: 56
Period size: 3 Copynumber: 56.0 Consensus size: 3
44232508 GATAGCAGTG
* * * *
44232518 ATA ATA TTA ATA ATA A-A AGTA ATA CTA ATA ATA ATA TTA GTA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
44232563 ACA AAA ATA ATA GTA ATA A-A AGTA ACA A-A GATA ATA ATA CT- ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA -ATA ATA ATA ATA ATA
* * * ** * * * * *
44232607 GTA ATG ATG ACG TTA ATA ATA ATA ATA CTA AAA ATA AAA ATA ACA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
44232654 ACTA CTA ATA ATA AAA ATA ATT ATA A-A ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
44232684 GCAAAGATAT
Statistics
Matches: 117, Mismatches: 36, Indels: 20
0.68 0.21 0.12
Matches are distributed among these distances:
2 10 0.09
3 101 0.86
4 6 0.05
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:44232573 original size:27 final size:26
Alignment explanation
Indices: 44232543--44232611 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 26
44232533 AAAGTAATAC
44232543 TAATAATAATATTAGTAATAACAAAAA
1 TAATAATAATA-TAGTAATAACAAAAA
* *
44232570 TAATAGTAATA-A--AAGTAACAAAGA
1 TAATAATAATATAGTAA-TAACAAAAA
*
44232594 TAATAATACTATAGTAAT
1 TAATAATAATATAGTAAT
44232612 GATGACGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.06
24 17 0.50
25 2 0.06
26 1 0.03
27 12 0.35
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.29
Consensus pattern (26 bp):
TAATAATAATATAGTAATAACAAAAA
Found at i:44234145 original size:50 final size:50
Alignment explanation
Indices: 44234091--44234349 Score: 257
Period size: 50 Copynumber: 5.2 Consensus size: 50
44234081 TGTGATGTCG
* * * **
44234091 GGGAAGCAAGATTCGCCGTTGTGTCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCT
* * * * ** ** * *
44234141 GGGAAGTAAGATTCACCATTGTGGCTTTATTCTTTTTAACTATAATGTCA
1 GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCT
* * *
44234191 GGGAAGTAAGATTCGCTGTTGTGGCTTTAATCTGTTCCACTGCAGTGCAT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCT
* * * ** * *
44234241 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCT
* * * *
44234291 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATTGCCT
1 GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCT
44234341 GGGAAGTAA
1 GGGAAGTAA
44234350 AATTGGTATT
Statistics
Matches: 161, Mismatches: 48, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
50 161 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCAATGCCT
Found at i:44234268 original size:100 final size:100
Alignment explanation
Indices: 44234085--44234349 Score: 368
Period size: 100 Copynumber: 2.6 Consensus size: 100
44234075 TTTGACTGTG
* * *
44234085 ATGTCGGGGAAGCAAGATTCGCCGTTGTGTCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAA
1 ATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAA
* * *
44234150 GATTCACCATTGTGGCTTTATTCTTTTTAACTATA
66 GATTCACCATTGTAGCTTTAATCTTTTTAACTACA
* * * * *
44234185 ATGTCAGGGAAGTAAGATTCGCTGTTGTGGCTTTAATCTGTTCCACTGCAGTGCATGGGAAGTAA
1 ATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAA
* ** *
44234250 GATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCA
66 GATTCACCATTGTAGCTTTAATCTTTTTAACTACA
* * *
44234285 ATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATTGCCTGGGAAGTAA
1 ATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAA
44234350 AATTGGTATT
Statistics
Matches: 143, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 143 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (100 bp):
ATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAA
GATTCACCATTGTAGCTTTAATCTTTTTAACTACA
Found at i:44235628 original size:14 final size:14
Alignment explanation
Indices: 44235609--44235643 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
44235599 ACCCTCTCCA
*
44235609 TCATTTTGTATTTT
1 TCATTTTCTATTTT
*
44235623 TCATTTTCTCTTTT
1 TCATTTTCTATTTT
44235637 TCATTTT
1 TCATTTT
44235644 TCACATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.14, G:0.03, T:0.71
Consensus pattern (14 bp):
TCATTTTCTATTTT
Found at i:44241424 original size:14 final size:15
Alignment explanation
Indices: 44241405--44241434 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
44241395 AGGCACACAC
44241405 ACAAAAAA-AAAAAA
1 ACAAAAAACAAAAAA
44241419 ACAAAAAACAAAAAA
1 ACAAAAAACAAAAAA
44241434 A
1 A
44241435 TGAATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (15 bp):
ACAAAAAACAAAAAA
Found at i:44242559 original size:18 final size:18
Alignment explanation
Indices: 44242536--44242573 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
44242526 CCTTACTAAC
44242536 GTTTATATATTTTATTGG
1 GTTTATATATTTTATTGG
44242554 GTTTATATATTTTATTGG
1 GTTTATATATTTTATTGG
44242572 GT
1 GT
44242574 AAATTATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (18 bp):
GTTTATATATTTTATTGG
Found at i:44251611 original size:17 final size:17
Alignment explanation
Indices: 44251574--44251615 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
44251564 TTTAAATATC
*
44251574 AAAATTCAATAAATTAAT
1 AAAATT-AATAAATAAAT
*
44251592 AAAATTAATGAATAAAT
1 AAAATTAATAAATAAAT
44251609 AAAATTA
1 AAAATTA
44251616 TGACCTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAATTAATAAATAAAT
Found at i:44253533 original size:12 final size:10
Alignment explanation
Indices: 44253503--44253545 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
44253493 AATATGGACA
*
44253503 TAATGAATTT
1 TAATTAATTT
44253513 TAATTAATTT
1 TAATTAATTT
44253523 TATAGTTAATTT
1 TA-A-TTAATTT
*
44253535 TGATTAATTT
1 TAATTAATTT
44253545 T
1 T
44253546 GACTATTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (10 bp):
TAATTAATTT
Found at i:44261059 original size:23 final size:24
Alignment explanation
Indices: 44261028--44261078 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 24
44261018 ACTTTGAAAA
44261028 CATGATTGAGTAGTTAAGTTTTAG
1 CATGATTGAGTAGTTAAGTTTTAG
44261052 CATG-TTGAGTAGTTAAGTTTTAG
1 CATGATTGAGTAGTTAAGTTTTAG
44261075 CATG
1 CATG
44261079 CCTTGCTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.27, C:0.06, G:0.25, T:0.41
Consensus pattern (24 bp):
CATGATTGAGTAGTTAAGTTTTAG
Found at i:44264904 original size:48 final size:47
Alignment explanation
Indices: 44264852--44264984 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 47
44264842 TGATTTGTAC
* *
44264852 AAAAATGAACAGCATTTAAGCACCAATTTGGACAACATTAATATGCTA
1 AAAAATGAACAGCATTTAAACAAC-ATTTGGACAACATTAATATGCTA
* * * * * *
44264900 AAAAACGAACAGCATTTAACCAACATTCGAACAACATCAGTATGCTA
1 AAAAATGAACAGCATTTAAACAACATTTGGACAACATTAATATGCTA
*
44264947 AAAAATGGACAGCATTTAAACAACATTTGGACAACATT
1 AAAAATGAACAGCATTTAAACAACATTTGGACAACATT
44264985 TAATCAACAT
Statistics
Matches: 72, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 51 0.71
48 21 0.29
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.23
Consensus pattern (47 bp):
AAAAATGAACAGCATTTAAACAACATTTGGACAACATTAATATGCTA
Found at i:44264984 original size:22 final size:22
Alignment explanation
Indices: 44264952--44265189 Score: 120
Period size: 22 Copynumber: 10.5 Consensus size: 22
44264942 TGCTAAAAAA
44264952 TGGACAGCATTTAAACAACATT
1 TGGACAGCATTTAAACAACATT
* *
44264974 TGGACAACATTTAATCAACATT
1 TGGACAGCATTTAAACAACATT
* * ** **
44264996 CGGACATCATTAGTATGCTAA-AAA
1 TGGACAGCATT--TAAAC-AACATT
*
44265020 TGGACAGTATTTAAACAACATT
1 TGGACAGCATTTAAACAACATT
** * *
44265042 CAGACAACATTTAACCAACATT
1 TGGACAGCATTTAAACAACATT
* ** * **
44265064 TGGACAACATTAGTATGCTAAAAAA
1 TGGACAGCATT--TAAAC-AACATT
*
44265089 TGGACAGCATTTAAACAACAGT
1 TGGACAGCATTTAAACAACATT
* * *
44265111 CGGACAGCATTTAACCAATATT
1 TGGACAGCATTTAAACAACATT
* * **
44265133 TGGACAGCA-TTAGCATGCTAAAAAA
1 TGGACAGCATTTA--A-AC-AACATT
44265158 TGGACAGCATTTAAACAACATT
1 TGGACAGCATTTAAACAACATT
*
44265180 CGGACAGCAT
1 TGGACAGCAT
44265190 CTTGTCATAA
Statistics
Matches: 157, Mismatches: 47, Indels: 24
0.69 0.21 0.11
Matches are distributed among these distances:
21 5 0.03
22 100 0.64
23 5 0.03
24 17 0.11
25 27 0.17
26 3 0.02
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (22 bp):
TGGACAGCATTTAAACAACATT
Found at i:44265050 original size:11 final size:11
Alignment explanation
Indices: 44265028--44265074 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
44265018 AATGGACAGT
*
44265028 ATTTAAACAAC
1 ATTTAGACAAC
*
44265039 ATTCAGACAAC
1 ATTTAGACAAC
44265050 ATTTA-ACCAAC
1 ATTTAGA-CAAC
*
44265061 ATTTGGACAAC
1 ATTTAGACAAC
44265072 ATT
1 ATT
44265075 AGTATGCTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
10 1 0.03
11 28 0.93
12 1 0.03
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (11 bp):
ATTTAGACAAC
Found at i:44265186 original size:69 final size:69
Alignment explanation
Indices: 44264908--44265189 Score: 422
Period size: 69 Copynumber: 4.1 Consensus size: 69
44264898 TAAAAAACGA
* *
44264908 ACAGCATTTAACCAACATTCGAACAACATCAGTATGCTAAAAAATGGACAGCATTTAAACAACAT
1 ACAGCATTTAACCAACATTCGGACAACATTAGTATGCTAAAAAATGGACAGCATTTAAACAACAT
*
44264973 TTGG
66 TCGG
* * * *
44264977 ACAACATTTAATCAACATTCGGACATCATTAGTATGCT-AAAAATGGACAGTATTTAAACAACAT
1 ACAGCATTTAACCAACATTCGGACAACATTAGTATGCTAAAAAATGGACAGCATTTAAACAACAT
*
44265041 TCAG
66 TCGG
* * *
44265045 ACAACATTTAACCAACATTTGGACAACATTAGTATGCTAAAAAATGGACAGCATTTAAACAACAG
1 ACAGCATTTAACCAACATTCGGACAACATTAGTATGCTAAAAAATGGACAGCATTTAAACAACAT
44265110 TCGG
66 TCGG
* * * *
44265114 ACAGCATTTAACCAATATTTGGACAGCATTAGCATGCTAAAAAATGGACAGCATTTAAACAACAT
1 ACAGCATTTAACCAACATTCGGACAACATTAGTATGCTAAAAAATGGACAGCATTTAAACAACAT
44265179 TCGG
66 TCGG
44265183 ACAGCAT
1 ACAGCAT
44265190 CTTGTCATAA
Statistics
Matches: 193, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
68 62 0.32
69 131 0.68
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (69 bp):
ACAGCATTTAACCAACATTCGGACAACATTAGTATGCTAAAAAATGGACAGCATTTAAACAACAT
TCGG
Found at i:44265898 original size:42 final size:42
Alignment explanation
Indices: 44265831--44265910 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
44265821 TATAATATAT
*
44265831 CGATGCCACTATCCCAGACAGGGTCTTACACGAAATCATCTA
1 CGATGCCACTATCCCAAACAGGGTCTTACACGAAATCATCTA
* * *
44265873 CGATGCCAGTGTCCCAAACATGGTCTTACACGAAATCA
1 CGATGCCACTATCCCAAACAGGGTCTTACACGAAATCA
44265911 CACCTTGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (42 bp):
CGATGCCACTATCCCAAACAGGGTCTTACACGAAATCATCTA
Found at i:44274142 original size:5 final size:5
Alignment explanation
Indices: 44274132--44274156 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
44274122 TCTTTTTCTA
44274132 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
44274157 TATAAGACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:44288508 original size:29 final size:29
Alignment explanation
Indices: 44288454--44288512 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
44288444 AGCCCATATA
*
44288454 TTTCACAATTTCTCACATTTGACCCACAAT
1 TTTCACAATTTCTCACATTTAACCCA-AAT
*
44288484 TTTCAC-ATTTCTCA-TTTTAACCCCAAAT
1 TTTCACAATTTCTCACATTTAA-CCCAAAT
44288512 T
1 T
44288513 GACATTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 8 0.31
29 12 0.46
30 6 0.23
ACGTcount: A:0.29, C:0.29, G:0.02, T:0.41
Consensus pattern (29 bp):
TTTCACAATTTCTCACATTTAACCCAAAT
Found at i:44292912 original size:37 final size:37
Alignment explanation
Indices: 44292862--44292940 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
44292852 TTATTACGAA
* *
44292862 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
44292899 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
44292936 GTCTT
1 GTCTT
44292941 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:44293162 original size:46 final size:48
Alignment explanation
Indices: 44293110--44293209 Score: 177
Period size: 46 Copynumber: 2.1 Consensus size: 48
44293100 CTCGGCCCTG
*
44293110 TCACATATATACACTTTCACATTCA-CACATCGGCCGTTAGGCCTTA-
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
44293156 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
44293204 TCACAT
1 TCACAT
44293210 TCATCACATC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 25 0.49
47 20 0.39
48 6 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (48 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:44293212 original size:32 final size:32
Alignment explanation
Indices: 44293171--44293240 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
44293161 TATATACACT
44293171 TTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTCACATTCATCACATCGGCCATTAGGCCTTA
*
44293203 TTCACATTCATCACATCGGCTATTAGGCCTTA
1 TTCACATTCATCACATCGGCCATTAGGCCTTA
44293235 -TCACAT
1 TTCACAT
44293241 ATATACACTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 6 0.16
32 31 0.84
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (32 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:44293255 original size:79 final size:78
Alignment explanation
Indices: 44293125--44293287 Score: 283
Period size: 79 Copynumber: 2.1 Consensus size: 78
44293115 TATATACACT
*
44293125 TTCACATTCACACATCGGCCGTTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 TTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
44293190 CCATTAGGCCTTA
66 CCATTAGGCCTTA
*
44293203 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 TTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
44293268 GCTATTAGGCCTTA
65 GCCATTAGGCCTTA
44293282 -TCACAT
1 TTCACAT
44293288 ATATACATTT
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
78 16 0.20
79 65 0.80
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (78 bp):
TTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTA
Found at i:44293256 original size:47 final size:47
Alignment explanation
Indices: 44293203--44293516 Score: 565
Period size: 47 Copynumber: 6.7 Consensus size: 47
44293193 TTAGGCCTTA
*
44293203 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
1 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
* *
44293250 TTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACATT
1 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
*
44293297 TTCACATTCATCACATCGACTATTAGGCCTTATCACACATATACACT
1 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
44293344 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
1 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
44293391 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
1 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
* *
44293438 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
*
44293485 TTCACATTCATCACATCGGCCATTAGGCCTTA
1 TTCACATTCATCACATCGGCTATTAGGCCTTA
44293517 CTATCATTTC
Statistics
Matches: 260, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 260 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
TTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
Found at i:44297166 original size:40 final size:40
Alignment explanation
Indices: 44297109--44297291 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
44297099 CCAGCATGAT
* *
44297109 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
44297149 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * ** *
44297189 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCCCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
44297230 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
44297270 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
44297292 CATCATTCGA
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.82
41 18 0.15
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:44297635 original size:29 final size:29
Alignment explanation
Indices: 44297596--44297674 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
44297586 CTTAATAATC
*
44297596 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
44297626 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
44297655 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
44297675 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:44297764 original size:45 final size:43
Alignment explanation
Indices: 44297656--44297803 Score: 260
Period size: 43 Copynumber: 3.4 Consensus size: 43
44297646 TGCATTTCAA
*
44297656 GCCCGCACACTTAGTGCCAATCTCACAACTGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
44297699 GCCCGCACAATTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
44297742 GCCCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 G--CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
44297787 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
44297804 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
43 58 0.58
45 42 0.42
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:44299707 original size:37 final size:37
Alignment explanation
Indices: 44299657--44299735 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
44299647 TTATTACGAA
* *
44299657 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
44299694 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
44299731 GTCTT
1 GTCTT
44299736 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:44299920 original size:47 final size:47
Alignment explanation
Indices: 44299854--44300279 Score: 647
Period size: 47 Copynumber: 9.1 Consensus size: 47
44299844 CCCTTCGGGA
* * * * * * * * *
44299854 CTTATCACATTTATGCACTTTCGCATCCATCACGTTGCCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
44299901 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44299947 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44299994 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44300041 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
44300088 CTTATCACACATATACATTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44300135 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44300182 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44300229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44300276 CTTA
1 CTTA
44300280 CTATCATTTC
Statistics
Matches: 355, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 38 0.11
47 317 0.89
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44303210 original size:25 final size:25
Alignment explanation
Indices: 44303153--44303204 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
44303143 CTCATGAGTG
* *
44303153 TCCTGATATTTGGTTCTTACGAGCT
1 TCCTGTTATATGGTTCTTACGAGCT
* *
44303178 TCCTGTTATATGGTTTTTCCGAGCT
1 TCCTGTTATATGGTTCTTACGAGCT
44303203 TC
1 TC
44303205 TCGTTAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.46
Consensus pattern (25 bp):
TCCTGTTATATGGTTCTTACGAGCT
Found at i:44314038 original size:32 final size:34
Alignment explanation
Indices: 44313969--44314038 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
44313959 ATTTATTTGA
*
44313969 AATTTTATATAATTTAATAAAATTATTTGAATGT
1 AATTTTATATAATTTAATAAAATTATTTGAATAT
44314003 AATTTTA-AT-ATTTAAATAAAAATTA-TT-AATAT
1 AATTTTATATAATTT-AAT-AAAATTATTTGAATAT
44314035 AATT
1 AATT
44314039 AAAATAAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 12 0.36
33 7 0.21
34 14 0.42
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (34 bp):
AATTTTATATAATTTAATAAAATTATTTGAATAT
Found at i:44314060 original size:24 final size:25
Alignment explanation
Indices: 44314008--44314062 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
44313998 AATGTAATTT
*
44314008 TAAT-ATTTAAATAAAAATTATTAA
1 TAATAATTAAAATAAAAATTATTAA
* *
44314032 T-ATAATTAAAAT-AAAATTGTTTA
1 TAATAATTAAAATAAAAATTATTAA
44314055 TAATAATT
1 TAATAATT
44314063 TTAAAACCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
TAATAATTAAAATAAAAATTATTAA
Found at i:44320388 original size:30 final size:31
Alignment explanation
Indices: 44320339--44320396 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
44320329 ATTATTGAAC
*
44320339 TATTCAAAAGTTTTCATTTAAGTCATTAAAT
1 TATTCAAAAGTTTTCATTTAAATCATTAAAT
* *
44320370 TATTCGAAA-TTTTTATTTAAATCATTA
1 TATTCAAAAGTTTTCATTTAAATCATTA
44320397 GGCTGCTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (31 bp):
TATTCAAAAGTTTTCATTTAAATCATTAAAT
Found at i:44321192 original size:30 final size:29
Alignment explanation
Indices: 44321129--44321192 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
44321119 GTTTAATGTA
* * *
44321129 CAATTTTATACATGAACTTTGATTTTGTG
1 CAATTTTATACATAAAATTTGATTTTGTC
44321158 CAATTTTATACATAAAAATTTGA-TTTGATC
1 CAATTTTATACAT-AAAATTTGATTTTG-TC
44321188 CAATT
1 CAATT
44321193 CTCACAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (29 bp):
CAATTTTATACATAAAATTTGATTTTGTC
Found at i:44321350 original size:31 final size:31
Alignment explanation
Indices: 44321315--44321437 Score: 94
Period size: 31 Copynumber: 4.1 Consensus size: 31
44321305 ATGTGTATGA
*
44321315 TTGAATAACAATCAAAGTTTCATGTATATAT
1 TTGAACAACAATCAAAGTTTCATGTATATAT
* * * *
44321346 TTGAACCACAATCAAAGTTTTATGTGTATAA
1 TTGAACAACAATCAAAGTTTCATGTATATAT
* * *
44321377 TTGTACCA-AATCAAAGTTT-ATATATCA-AT
1 TTGAACAACAATCAAAGTTTCATGTAT-ATAT
* **
44321406 TTGCACATTGAATCAAAG-TTCATGTATA-AT
1 TTGAACA-ACAATCAAAGTTTCATGTATATAT
44321436 TT
1 TT
44321438 TAAAATTTAT
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
29 10 0.13
30 19 0.25
31 46 0.61
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (31 bp):
TTGAACAACAATCAAAGTTTCATGTATATAT
Found at i:44321391 original size:30 final size:31
Alignment explanation
Indices: 44321322--44321395 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
44321312 TGATTGAATA
*
44321322 ACAATCAAAGTTTCATGTATATATTTGAACC
1 ACAATCAAAGTTTCATGTATATAATTGAACC
* * *
44321353 ACAATCAAAGTTTTATGTGTATAATTGTACC
1 ACAATCAAAGTTTCATGTATATAATTGAACC
44321384 A-AATCAAAGTTT
1 ACAATCAAAGTTT
44321396 ATATATCAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 11 0.28
31 28 0.72
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (31 bp):
ACAATCAAAGTTTCATGTATATAATTGAACC
Found at i:44327110 original size:15 final size:15
Alignment explanation
Indices: 44327090--44327121 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
44327080 CATTTCACTA
*
44327090 TTATGTCTTTTATAT
1 TTATGTATTTTATAT
44327105 TTATGTATTTTATAT
1 TTATGTATTTTATAT
44327120 TT
1 TT
44327122 TACATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATGTATTTTATAT
Found at i:44328846 original size:12 final size:12
Alignment explanation
Indices: 44328829--44328876 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
44328819 TTTTAATAAG
44328829 ATTTAATATTAA
1 ATTTAATATTAA
44328841 ATTTAATCA-TAA
1 ATTTAAT-ATTAA
44328853 ATATT-ATATT-A
1 AT-TTAATATTAA
44328864 ATTTAATATTAA
1 ATTTAATATTAA
44328876 A
1 A
44328877 GTAATTAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 2 0.06
11 9 0.29
12 17 0.55
13 3 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:44331041 original size:26 final size:27
Alignment explanation
Indices: 44331005--44331077 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
44330995 TATTTTCTTG
*
44331005 AAATTTTACCAGGGGTAAAATTG-TTA
1 AAATTTTACCAGGGGTAAAATTGATCA
44331031 AAATTTTACCAGGGGTAAAA-TGATCA
1 AAATTTTACCAGGGGTAAAATTGATCA
***
44331057 AAATTTTGTTAGGGGTAAAAT
1 AAATTTTACCAGGGGTAAAAT
44331078 AGGGATGAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
25 2 0.05
26 39 0.95
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (27 bp):
AAATTTTACCAGGGGTAAAATTGATCA
Found at i:44340893 original size:29 final size:28
Alignment explanation
Indices: 44340861--44340922 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
44340851 AAAAAGTCGT
*
44340861 TTTTTTCAAAATTTACTGAAATGGGCCGA
1 TTTTTTCAAAATTTACCGAAATGGGCC-A
* ** *
44340890 TTTTTTGATTATTTACCGGAATGGGCCA
1 TTTTTTCAAAATTTACCGAAATGGGCCA
44340918 TTTTT
1 TTTTT
44340923 CGCGAAATCG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (28 bp):
TTTTTTCAAAATTTACCGAAATGGGCCA
Found at i:44349032 original size:3 final size:3
Alignment explanation
Indices: 44349024--44349059 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
44349014 GTTTTCTCCC
44349024 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
44349060 GTTGTTTTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:44350267 original size:74 final size:74
Alignment explanation
Indices: 44350146--44350306 Score: 313
Period size: 74 Copynumber: 2.2 Consensus size: 74
44350136 TGACCAAATT
44350146 AACTAAAAAATATTTGAGTGGCCAAAATAGATCATTATTTAGAGTGACTAACAAGATAGTTGACC
1 AACTAAAAAATATTTGAGTGGCCAAAATAGATCATTATTTAGAGTGACTAACAAGATAGTTGACC
44350211 CTATTTAAA
66 CTATTTAAA
44350220 AACTAAAAAATATTTGAGTGGCCAAAATAGATCATTATTTAGAGTGACTAACAAGATAGTTGACC
1 AACTAAAAAATATTTGAGTGGCCAAAATAGATCATTATTTAGAGTGACTAACAAGATAGTTGACC
44350285 CTATTTAAA
66 CTATTTAAA
*
44350294 AATTAAAAAATAT
1 AACTAAAAAATAT
44350307 ATATGACATG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 86 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (74 bp):
AACTAAAAAATATTTGAGTGGCCAAAATAGATCATTATTTAGAGTGACTAACAAGATAGTTGACC
CTATTTAAA
Found at i:44359509 original size:17 final size:17
Alignment explanation
Indices: 44359487--44359519 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
44359477 AATGGATCAT
44359487 GGTTTATCTTTAGTTCC
1 GGTTTATCTTTAGTTCC
44359504 GGTTTATCTTTAGTTC
1 GGTTTATCTTTAGTTC
44359520 TCAATTTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.15, G:0.18, T:0.55
Consensus pattern (17 bp):
GGTTTATCTTTAGTTCC
Found at i:44360335 original size:43 final size:43
Alignment explanation
Indices: 44360238--44360336 Score: 137
Period size: 43 Copynumber: 2.3 Consensus size: 43
44360228 TAGCTCTCTC
*
44360238 TTATAACTACCATTAGTGTGCCTTAATTGGACATTTAGCGTGG
1 TTATAACTACCATTAGTGTGCCTTAATTGGACATTTAACGTGG
*** *
44360281 TTATGGTTACCATTAGTGTTG-CTTAATTGGACATTTAACGTTG
1 TTATAACTACCATTAGTG-TGCCTTAATTGGACATTTAACGTGG
44360324 TTATAACTACCAT
1 TTATAACTACCAT
44360337 CAAACTTTCC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 45 0.96
44 2 0.04
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (43 bp):
TTATAACTACCATTAGTGTGCCTTAATTGGACATTTAACGTGG
Found at i:44360939 original size:47 final size:47
Alignment explanation
Indices: 44360888--44361031 Score: 131
Period size: 47 Copynumber: 3.1 Consensus size: 47
44360878 ATTATTAAGA
*
44360888 ATTTTATGAAATTATATATCATTATTAAATTATATTTAATATAAATT
1 ATTTTATGAAATTATATATAATTATTAAATTATATTTAATATAAATT
* * * * **
44360935 A-TTT-T-AAATTATACA-AATTCATATAAGA-CA-ATTTATTATCAAGA
1 ATTTTATGAAATTATATATAATT-AT-TAA-ATTATATTTAATATAAATT
*
44360979 ATTTTATGAAATTATATATTATTATTAAATTATATTTAATA-ATAATT
1 ATTTTATGAAATTATATATAATTATTAAATTATATTTAATATA-AATT
44361026 ATTTTA
1 ATTTTA
44361032 AATTATACAA
Statistics
Matches: 73, Mismatches: 14, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
43 3 0.04
44 22 0.30
45 9 0.12
46 9 0.12
47 27 0.37
48 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (47 bp):
ATTTTATGAAATTATATATAATTATTAAATTATATTTAATATAAATT
Found at i:44361082 original size:91 final size:90
Alignment explanation
Indices: 44360858--44361072 Score: 342
Period size: 91 Copynumber: 2.4 Consensus size: 90
44360848 TGGTTTTAGT
*
44360858 AAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
1 AAATTCATATAAGAAAATTTATTA-TAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
44360923 TTAATATAAATTATTTTAAATTATAC
65 TTAATATAAATTATTTTAAATTATAC
* *
44360949 AAATTCATATAAGACAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATAT
1 AAATTCATATAAGAAAATTTATTAT-AAGAATTTTATGAAATTATATATCATTATTAAATTATAT
44361014 TTAATA-ATAATTATTTTAAATTATAC
65 TTAATATA-AATTATTTTAAATTATAC
* *
44361040 AAATTCATATAACAAAATTTATTAGTAATAATT
1 AAATTCATATAAGAAAATTTATTA-TAAGAATT
44361073 ATTTTAAATT
Statistics
Matches: 115, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
90 2 0.02
91 112 0.97
92 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
AAATTCATATAAGAAAATTTATTATAAGAATTTTATGAAATTATATATCATTATTAAATTATATT
TAATATAAATTATTTTAAATTATAC
Found at i:44361158 original size:59 final size:58
Alignment explanation
Indices: 44361065--44361278 Score: 197
Period size: 59 Copynumber: 3.7 Consensus size: 58
44361055 AATTTATTAG
* *
44361065 TAATAATTATTTTAAATT-T-TATTA-A-ATCATATATTTTAATTAAAATATATTTAA
1 TAATAATTATTTCAAATTATATTTTATATATCATATATTTTAATTAAAATATATTTAA
* * ** * * *
44361119 TAATAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATA
1 TAATAATTATTTCAAATTATATTTTATA-TATCATATATTTTAATTAAAATATATTTA-A
* * * * *
44361179 TAAGAA-TATTT-ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
1 TAATAATTATTTCA-AATT-A-TATTTTA-TATATCATATATTTTAATTAAAATATATTTAA
44361239 TAATAATTATTTCAAATTATATTTTATAATATCATATATT
1 TAATAATTATTTCAAATTATATTTTAT-ATATCATATATT
44361279 ATGATTTTAG
Statistics
Matches: 121, Mismatches: 26, Indels: 21
0.72 0.15 0.12
Matches are distributed among these distances:
54 17 0.14
55 1 0.01
56 4 0.03
57 1 0.01
58 2 0.02
59 45 0.37
60 14 0.12
61 34 0.28
62 3 0.02
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (58 bp):
TAATAATTATTTCAAATTATATTTTATATATCATATATTTTAATTAAAATATATTTAA
Found at i:44361207 original size:15 final size:16
Alignment explanation
Indices: 44361179--44361208 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
44361169 TAAATTCATA
44361179 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
44361195 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
44361209 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:44361210 original size:120 final size:120
Alignment explanation
Indices: 44361079--44361368 Score: 544
Period size: 120 Copynumber: 2.4 Consensus size: 120
44361069 AATTATTTTA
*
44361079 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
* *
44361144 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAG
66 ATAATATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
44361199 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
44361264 ATAATATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAATATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
*
44361319 AAATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
44361369 GTTAAAATAT
Statistics
Matches: 166, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 166 1.00
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
ATAATATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:44361211 original size:130 final size:127
Alignment explanation
Indices: 44361040--44361368 Score: 454
Period size: 120 Copynumber: 2.7 Consensus size: 127
44361030 TAAATTATAC
* * * *
44361040 AAATTCATATAACAAAATTTATTAGTAATAATTATTTTAAATTTTATTAAATCATATATTTTAAT
1 AAATTCATATAAGAATATTTATTATTAAGAATT-TTTTAAA-TTTATTAAAT-ATATATTTTAAT
*
44361105 TAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGT
63 TAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAATATCATATATTATGATTTTAGT
*
44361170 AAATTCATATAAGAATATTTATTATTAAGAA--TTTT--A-TTA--AATTATATATTTTAATTAA
1 AAATTCATATAAGAATATTTATTATTAAGAATTTTTTAAATTTATTAAATATATATTTTAATTAA
44361228 AATATATTTAATAATAATTATTTCAAATTATATTTTATAATATCATATATTATGATTTTAGT
66 AATATATTTAATAATAATTATTTCAAATTATATTTTATAATATCATATATTATGATTTTAGT
*
44361290 AAATTCATATAAGAATATTGATTATTAAG--------AAATTTATTAAATTATATATTTTAATTA
1 AAATTCATATAAGAATATTTATTATTAAGAATTTTTTAAATTTATTAAA-TATATATTTTAATTA
44361347 AAATATATTTAATAATAATTAT
65 AAATATATTTAATAATAATTAT
44361369 GTTAAAATAT
Statistics
Matches: 185, Mismatches: 8, Indels: 22
0.86 0.04 0.10
Matches are distributed among these distances:
116 1 0.01
117 3 0.02
119 2 0.01
120 141 0.76
121 3 0.02
123 3 0.02
125 1 0.01
127 4 0.02
130 27 0.15
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (127 bp):
AAATTCATATAAGAATATTTATTATTAAGAATTTTTTAAATTTATTAAATATATATTTTAATTAA
AATATATTTAATAATAATTATTTCAAATTATATTTTATAATATCATATATTATGATTTTAGT
Found at i:44361217 original size:61 final size:61
Alignment explanation
Indices: 44361152--44361339 Score: 197
Period size: 61 Copynumber: 3.1 Consensus size: 61
44361142 TTATAGTATC
44361152 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATT
* * ** * * * * * * *
44361213 ATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAATATC
1 ATATATTATGATTTTAGTAAATTCATATAAGAA-TATTT-ATTATTAAGAATTTTATTAA-ATT
* *
44361272 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAAATTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATT
44361333 ATATATT
1 ATATATT
44361340 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
58 4 0.04
59 33 0.35
60 14 0.15
61 40 0.42
62 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATT
Found at i:44361228 original size:18 final size:17
Alignment explanation
Indices: 44361200--44361234 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44361190 ATTATTAAGA
*
44361200 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44361217 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44361235 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44361280 original size:22 final size:24
Alignment explanation
Indices: 44361254--44361300 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
44361244 ATTATTTCAA
44361254 ATTAT-ATTTTA-T-AATATCATAT
1 ATTATGATTTTAGTAAAT-TCATAT
44361276 ATTATGATTTTAGTAAATTCATAT
1 ATTATGATTTTAGTAAATTCATAT
44361300 A
1 A
44361301 AGAATATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 8 0.36
25 3 0.14
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (24 bp):
ATTATGATTTTAGTAAATTCATAT
Found at i:44361336 original size:59 final size:58
Alignment explanation
Indices: 44361153--44361336 Score: 157
Period size: 57 Copynumber: 3.1 Consensus size: 58
44361143 TATAGTATCA
*
44361153 TATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTTAGTAAATTCATATAAGAATA-TTATTATTAAGAAATTTATTAAAT
* * * * *
44361212 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATTATT-TCAA-ATTATATTT-TATAATA
1 TATATTATGATTTTAGT-AAAT-TCATATAAGAAT-ATTATTATTAAGA--A-ATTTAT-TAA-A
44361270 T
58 T
44361271 CATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAAATTTATTAAAT
1 --TATATTATGATTTTAGTAAATTCATATAAGAATATT-ATTATTAAGAAATTTATTAAAT
44361332 TATAT
1 TATAT
44361337 ATTTTAATTA
Statistics
Matches: 96, Mismatches: 11, Indels: 36
0.67 0.08 0.25
Matches are distributed among these distances:
55 1 0.01
56 8 0.08
57 19 0.20
58 11 0.11
59 11 0.11
61 6 0.06
62 14 0.15
63 17 0.18
64 8 0.08
65 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTTAGTAAATTCATATAAGAATATTATTATTAAGAAATTTATTAAAT
Found at i:44361574 original size:44 final size:45
Alignment explanation
Indices: 44361510--44361607 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
44361500 CTATTACACC
* *
44361510 TCCATTCCACTCAACTAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACACTCAACCAAACA-ATAGAATTACTATTACGCCTCTAT
* * *
44361554 TCCATTACATTCAACCAAACAATTGAATTGCTATTACGCCTCTAT
1 TCCATTACACTCAACCAAACAATAGAATTACTATTACGCCTCTAT
44361599 TCCATTACA
1 TCCATTACA
44361608 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 21 0.45
45 25 0.53
ACGTcount: A:0.35, C:0.30, G:0.05, T:0.31
Consensus pattern (45 bp):
TCCATTACACTCAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:44367728 original size:14 final size:15
Alignment explanation
Indices: 44367706--44367782 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
44367696 CAATCAAACA
44367706 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
44367720 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
44367735 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
44367755 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
**
44367769 CTGGAAAA-CATTTT
1 CCAGAAAATCATTTT
44367783 ACTGCCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:44367747 original size:20 final size:20
Alignment explanation
Indices: 44367722--44367761 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
44367712 AATATTTTCC
*
44367722 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
44367742 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
44367762 TCATTTTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:44368197 original size:18 final size:16
Alignment explanation
Indices: 44368187--44368231 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
44368177 TTTGAGTTGA
44368187 GAAAATTATTTAATTG
1 GAAAATTATTTAATTG
*
44368203 GAAAATTAATTAATT-
1 GAAAATTATTTAATTG
44368218 -AAAATTAATTTAAT
1 GAAAATT-ATTTAAT
44368232 AAATAATGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 6 0.23
15 6 0.23
16 14 0.54
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (16 bp):
GAAAATTATTTAATTG
Found at i:44373856 original size:20 final size:20
Alignment explanation
Indices: 44373818--44373856 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
44373808 TATAGTTGAA
*
44373818 ATAGTATTTTATGCTTTTTC
1 ATAGTATTTTATGATTTTTC
44373838 ATAGT-TTTTATGATATTTT
1 ATAGTATTTTATGAT-TTTT
44373857 GATACTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (20 bp):
ATAGTATTTTATGATTTTTC
Found at i:44375237 original size:9 final size:9
Alignment explanation
Indices: 44375220--44375256 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
44375210 TGAGTTTTCG
44375220 AATTCGAAT
1 AATTCGAAT
*
44375229 AACTCGAAT
1 AATTCGAAT
*
44375238 AATTCAAAT
1 AATTCGAAT
44375247 AATTCGAAT
1 AATTCGAAT
44375256 A
1 A
44375257 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:44375510 original size:30 final size:31
Alignment explanation
Indices: 44375476--44375535 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
44375466 AAACCTTTTA
*
44375476 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCATCCCAC
* *
44375506 TTTTCCCCTAAAACTTTTATTCCCATCCCA
1 TTTTCCCCCAAAACTTTTACTCCCATCCCA
44375536 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.22, C:0.40, G:0.00, T:0.38
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCATCCCAC
Found at i:44379987 original size:12 final size:13
Alignment explanation
Indices: 44379972--44380000 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
44379962 TTTTATAAGA
44379972 AAATAAAT-AAAT
1 AAATAAATAAAAT
44379984 AAATAAATAAAAT
1 AAATAAATAAAAT
44379997 AAAT
1 AAAT
44380001 CAAACACGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:44383606 original size:39 final size:40
Alignment explanation
Indices: 44383563--44383730 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
44383553 CTCGTTCAAG
* * * *
44383563 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
44383602 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
44383642 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
44383682 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
44383722 TGCCTTCGG
1 TGCCTTCGG
44383731 ATCTTAGTCT
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:44383652 original size:40 final size:39
Alignment explanation
Indices: 44383600--44383730 Score: 190
Period size: 40 Copynumber: 3.3 Consensus size: 39
44383590 TAACTCATAC
* *
44383600 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
44383640 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
44383680 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
44383720 AATGCCTTCGG
1 AATGCCTTCGG
44383731 ATCTTAGTCT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:44383767 original size:80 final size:79
Alignment explanation
Indices: 44383598--44383783 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 79
44383588 AGTAACTCAT
* * *
44383598 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
44383663 AATTAGTATCTCGC
66 AATTAGTATCTAGC
**
44383677 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACC
*
44383740 TGG-ATATAGTCA-CTTAGC
63 CGGAAT-TAGT-ATC-TAGC
*
44383758 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
44383784 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 13 0.14
80 71 0.76
81 9 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTATCTAGC
Found at i:44401023 original size:21 final size:22
Alignment explanation
Indices: 44400999--44401043 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
44400989 AGAAAAAGAG
44400999 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
44401020 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
44401042 AA
1 AA
44401044 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:44403558 original size:40 final size:41
Alignment explanation
Indices: 44403502--44403713 Score: 265
Period size: 40 Copynumber: 5.3 Consensus size: 41
44403492 CATTTGAATG
* *
44403502 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * * *
44403542 TTATCCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
44403582 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
44403622 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
44403662 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTAG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
44403702 ATATCC-GGCTAA
1 ATATCCGGGCTAA
44403714 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 22, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
39 8 0.05
40 133 0.91
41 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:44403709 original size:80 final size:80
Alignment explanation
Indices: 44403502--44403694 Score: 341
Period size: 80 Copynumber: 2.4 Consensus size: 80
44403492 CATTTGAATG
44403502 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAAGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAAGCA
*
44403567 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
44403582 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAAGCA
44403647 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* *
44403662 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
44403695 TGTAGTTATA
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 107 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAAGCA
TTTGTGCGAGTTGAT
Found at i:44407206 original size:35 final size:34
Alignment explanation
Indices: 44407136--44407397 Score: 293
Period size: 35 Copynumber: 7.8 Consensus size: 34
44407126 AATAATACAT
* * * *
44407136 AACAGGAGAGATTCCTTGCAA-GAAATGAT-GTG
1 AACAGGAAAGATTCCCTGCAACAAAATAATGGTG
* *
44407168 AACAGGAAAGATTCCCTACAACAAAATAATCCGTG
1 AACAGGAAAGATTCCCTGCAACAAAATAAT-GGTG
* * *
44407203 AACAGGAGAGATTCCCTGCAA-GAAATGAT-GTG
1 AACAGGAAAGATTCCCTGCAACAAAATAATGGTG
44407235 AACAGGAAAGATTCCCTGCAACAAAATAATGTGTG
1 AACAGGAAAGATTCCCTGCAACAAAATAATG-GTG
*
44407270 AACAGGAGAGATTCCCTGCAACAAAATAATGTGTG
1 AACAGGAAAGATTCCCTGCAACAAAATAATG-GTG
* * * *
44407305 AAGAGGAGAGATTCCCTGCAA-GAAATGAT-GTG
1 AACAGGAAAGATTCCCTGCAACAAAATAATGGTG
*
44407337 AACAGGAAAGATTCCCTGCAACAGAATAATGCGTG
1 AACAGGAAAGATTCCCTGCAACAAAATAATG-GTG
* *
44407372 AACAGGAAATATTCCCTGCAAGAAAA
1 AACAGGAAAGATTCCCTGCAACAAAA
44407398 GACAAGTGAA
Statistics
Matches: 197, Mismatches: 24, Indels: 15
0.83 0.10 0.06
Matches are distributed among these distances:
32 63 0.32
33 17 0.09
34 12 0.06
35 105 0.53
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (34 bp):
AACAGGAAAGATTCCCTGCAACAAAATAATGGTG
Found at i:44407209 original size:67 final size:65
Alignment explanation
Indices: 44407136--44407397 Score: 310
Period size: 67 Copynumber: 3.9 Consensus size: 65
44407126 AATAATACAT
* * *
44407136 AACAGGAGAGATTCCTTGCAAGAAATGATGTGAACAGGAAAGATTCCCTACAACAAAATAATCCG
1 AACAGGAGAGATTCCCTGCAAGAAATAATGTGAACAGGAAAGATTCCCTGCAACAAAATAAT--G
44407201 TG
64 TG
*
44407203 AACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAACAAAATAATGTG
1 AACAGGAGAGATTCCCTGCAAGAAATAATGTGAACAGGAAAGATTCCCTGCAACAAAATAA--TG
44407268 TG
64 TG
* * * * *
44407270 AACAGGAGAGATTCCCTGCAACAAAATAATGTGTGAAGAGGAGAGATTCCCTGCAA-GAAATGAT
1 AACAGGAGAGATTCCCTGCAA-GAAATAA--TGTGAACAGGAAAGATTCCCTGCAACAAAATAAT
44407334 GTG
63 GTG
* * * *
44407337 AACAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAAA
1 AACAGGAGAGATTCCCTGCAAGA-AATAAT--GTGAACAGGAAAGATTCCCTGCAACAAAA
44407398 GACAAGTGAA
Statistics
Matches: 172, Mismatches: 14, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
65 1 0.01
66 1 0.01
67 133 0.77
68 8 0.05
69 6 0.03
70 23 0.13
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (65 bp):
AACAGGAGAGATTCCCTGCAAGAAATAATGTGAACAGGAAAGATTCCCTGCAACAAAATAATGTG
Found at i:44407296 original size:102 final size:102
Alignment explanation
Indices: 44407159--44407397 Score: 388
Period size: 102 Copynumber: 2.3 Consensus size: 102
44407149 CCTTGCAAGA
*
44407159 AATGATGTGAACAGGAAAGATTCCCTACAACAAAATAATCCGTGAACAGGAGAGATTCCCTGCAA
1 AATG-TGTGAACAGGAAAGATTCCCTGCAACAAAATAATCCGTGAACAGGAGAGATTCCCTGCAA
44407224 GAAATGATGTGAACAGGAAAGATTCCCTGCAACAAAAT
65 GAAATGATGTGAACAGGAAAGATTCCCTGCAACAAAAT
* ** *
44407262 AATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGTGTGAAGAGGAGAGATTCCCTGCAAG
1 AATGTGTGAACAGGAAAGATTCCCTGCAACAAAATAATCCGTGAACAGGAGAGATTCCCTGCAAG
*
44407327 AAATGATGTGAACAGGAAAGATTCCCTGCAACAGAAT
66 AAATGATGTGAACAGGAAAGATTCCCTGCAACAAAAT
* * *
44407364 AATGCGTGAACAGGAAATATTCCCTGCAAGAAAA
1 AATGTGTGAACAGGAAAGATTCCCTGCAACAAAA
44407398 GACAAGTGAA
Statistics
Matches: 126, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
102 122 0.97
103 4 0.03
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (102 bp):
AATGTGTGAACAGGAAAGATTCCCTGCAACAAAATAATCCGTGAACAGGAGAGATTCCCTGCAAG
AAATGATGTGAACAGGAAAGATTCCCTGCAACAAAAT
Found at i:44407707 original size:13 final size:13
Alignment explanation
Indices: 44407691--44407724 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
44407681 TGCATTTACA
44407691 AAATTAAGTTTTC
1 AAATTAAGTTTTC
44407704 AAATTAAGTTTTC
1 AAATTAAGTTTTC
44407717 AAACTTAA
1 AAA-TTAA
44407725 ACTATTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (13 bp):
AAATTAAGTTTTC
Found at i:44407849 original size:35 final size:33
Alignment explanation
Indices: 44407801--44407974 Score: 208
Period size: 32 Copynumber: 5.2 Consensus size: 33
44407791 TCACTTGTCT
* *
44407801 TTTCTTGCCGGGAATATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTTTCCTGTTCA-GCATTA
* *
44407835 TTCTGTTGCAGGGAATCTTTCCTGTTCA-CATCA
1 TT-TCTTGCAGGGAATCTTTCCTGTTCAGCATTA
*
44407868 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTTTCCTGTTCA-GCATTA
* *
44407902 TTTTGTTGCAGGGAATCTTTCCTGTTCA-CATCA
1 -TTTCTTGCAGGGAATCTTTCCTGTTCAGCATTA
* *
44407935 TTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
1 TTTCTTGCAGGGAATCTTTCCTGTTCA-GCATTA
44407969 TTTCTT
1 TTTCTT
44407975 TTTGGACCTG
Statistics
Matches: 120, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
32 48 0.40
33 10 0.08
34 15 0.12
35 47 0.39
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (33 bp):
TTTCTTGCAGGGAATCTTTCCTGTTCAGCATTA
Found at i:44407909 original size:67 final size:67
Alignment explanation
Indices: 44407801--44407971 Score: 288
Period size: 67 Copynumber: 2.6 Consensus size: 67
44407791 TCACTTGTCT
* * * *
44407801 TTTCTTGCCGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
44407866 CA
66 CA
44407868 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
44407933 CA
66 CA
* *
44407935 TTTCTTGCAGGGAATCTCTCCTGTTCATGTATTATTT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTT
44407972 CTTTTTGGAC
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 98 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.42
Consensus pattern (67 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
CA
Found at i:44410792 original size:21 final size:22
Alignment explanation
Indices: 44410762--44410806 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
44410752 GAGCAAATTG
44410762 TTGATTCTATTTCCTTTTTG-AT
1 TTGATTCTA-TTCCTTTTTGTAT
*
44410784 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCCTTTTTGTAT
44410805 TT
1 TT
44410807 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCCTTTTTGTAT
Found at i:44415157 original size:14 final size:13
Alignment explanation
Indices: 44415122--44415155 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
44415112 AGAAAATAGT
44415122 TTAAGTTTGAAAAC
1 TTAA-TTTGAAAAC
44415136 TTAATTTGAAAAC
1 TTAATTTGAAAAC
44415149 TTAATTT
1 TTAATTT
44415156 TGTAAATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTAATTTGAAAAC
Found at i:44415493 original size:35 final size:34
Alignment explanation
Indices: 44415454--44415722 Score: 298
Period size: 35 Copynumber: 8.0 Consensus size: 34
44415444 TTGTCTTTTC
* *
44415454 TTGCAGGGAATATTTCCTGTTCACGCATTATTCTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATT-TG
* * *
44415489 TTGCAGGGAATCTTTCCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
44415521 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTA-TTTG
*
44415556 TTGCAGGGAATCTCTCCTGTTCACACATTATTTTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTA-TTTG
* * *
44415591 TTGCAGGGAATCTTTCCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
* *
44415623 TTGCAGGAAATCTCTCCTGTTCACGGATTATTTTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTA-TTTG
* * * * *
44415658 TTGCGGGGAATATTTCCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
* *
44415690 TTGCAGGGAATCTCTCCTGTTCATGTATTATTT
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTT
44415723 CTTTTTGGAC
Statistics
Matches: 199, Mismatches: 27, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
32 70 0.35
33 13 0.07
34 13 0.07
35 103 0.52
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.41
Consensus pattern (34 bp):
TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
Found at i:44415635 original size:102 final size:102
Alignment explanation
Indices: 44415449--44415712 Score: 408
Period size: 102 Copynumber: 2.6 Consensus size: 102
44415439 TTCACTTGTC
* * *
44415449 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTTCACA
1 TTTTGTTGCAGGGAATATTTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTCCTGTTCACA
*
44415514 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
66 TCATTTCTTGCAGGAAATCTCTCCTGTTCACGCATTA
* *
44415551 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTCCTGTTCACA
1 TTTTGTTGCAGGGAATATTTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTCCTGTTCACA
*
44415616 TCATTTCTTGCAGGAAATCTCTCCTGTTCACGGATTA
66 TCATTTCTTGCAGGAAATCTCTCCTGTTCACGCATTA
* * * *
44415653 TTTTGTTGCGGGGAATATTTCCTGTT--CACATCA-TTTCTTGCAGGGAATCTCTCCTGTTCA
1 TTTTGTTGCAGGGAATATTTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTCCTGTTCA
44415713 TGTATTATTT
Statistics
Matches: 149, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
99 25 0.17
100 6 0.04
102 118 0.79
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (102 bp):
TTTTGTTGCAGGGAATATTTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTCCTGTTCACA
TCATTTCTTGCAGGAAATCTCTCCTGTTCACGCATTA
Found at i:44415720 original size:67 final size:68
Alignment explanation
Indices: 44415449--44415722 Score: 324
Period size: 67 Copynumber: 4.0 Consensus size: 68
44415439 TTCACTTGTC
* * *
44415449 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTTCA--
1 TTTTCTTGCAGGGAATATTTCCTGTTCAC-CATCATT-TCTTGCAGGGAATCTCTCCTGTTCACG
*
44415512 CATCA
64 CATTA
* * * * *
44415517 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGGAATATTTCCTGTTCAC-CATCA-TTTCTTGCAGGGAATCTCTCCTGTTCACG
44415581 CATTA
64 CATTA
* * * *
44415586 TTTTGTTGCAGGGAATCTTTCCTGTTCA-CATCATTTCTTGCAGGAAATCTCTCCTGTTCACGGA
1 TTTTCTTGCAGGGAATATTTCCTGTTCACCATCATTTCTTGCAGGGAATCTCTCCTGTTCACGCA
44415650 TTA
66 TTA
* * * *
44415653 TTTTGTTGCGGGGAATATTTCCTGTTCA-CATCATTTCTTGCAGGGAATCTCTCCTGTTCATGTA
1 TTTTCTTGCAGGGAATATTTCCTGTTCACCATCATTTCTTGCAGGGAATCTCTCCTGTTCACGCA
44415717 TTA
66 TTA
44415720 TTT
1 TTT
44415723 CTTTTTGGAC
Statistics
Matches: 186, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
67 151 0.81
68 6 0.03
69 4 0.02
70 25 0.13
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.42
Consensus pattern (68 bp):
TTTTCTTGCAGGGAATATTTCCTGTTCACCATCATTTCTTGCAGGGAATCTCTCCTGTTCACGCA
TTA
Found at i:44421021 original size:14 final size:13
Alignment explanation
Indices: 44420986--44421019 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
44420976 AGAAAATAGT
44420986 TTAAGTTTGAAAAC
1 TTAA-TTTGAAAAC
44421000 TTAATTTGAAAAC
1 TTAATTTGAAAAC
44421013 TTAATTT
1 TTAATTT
44421020 TGTAAATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTAATTTGAAAAC
Found at i:44421357 original size:35 final size:34
Alignment explanation
Indices: 44421318--44421519 Score: 241
Period size: 35 Copynumber: 6.0 Consensus size: 34
44421308 TTGTCTTTTC
* *
44421318 TTGCAGGGAATATTTCCTGTTCACGCATTATTCTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATT-TG
* * *
44421353 TTGCAGGGAATCTTTCCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
44421385 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTA-TTTG
*
44421420 TTGCAGGGAATCTCTCCTGTTCACACATTATTTTG
1 TTGCAGGGAATCTCTCCTGTTCACGCATTA-TTTG
* * * *
44421455 TTGCAGGGAATCTTTTCTGTTCA--CATCATTTC
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
* *
44421487 TTGCAGGGAATCTCTCCTGTTCATGTATTATTT
1 TTGCAGGGAATCTCTCCTGTTCACGCATTATTT
44421520 CTTTTTGGAC
Statistics
Matches: 147, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
32 47 0.32
33 10 0.07
34 10 0.07
35 80 0.54
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.42
Consensus pattern (34 bp):
TTGCAGGGAATCTCTCCTGTTCACGCATTATTTG
Found at i:44421422 original size:67 final size:68
Alignment explanation
Indices: 44421313--44421509 Score: 267
Period size: 67 Copynumber: 2.9 Consensus size: 68
44421303 TTCACTTGTC
* * *
44421313 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTTCACA
1 TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
44421378 TCA
66 TCA
*
44421381 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTT--CA
*
44421445 CATTA
64 CATCA
* * * *
44421450 TTTTGTTGCAGGGAATCTTTTCTGTTCA--CATCA-TTTCTTGCAGGGAATCTCTCCTGTTCA
1 TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCA
44421510 TGTATTATTT
Statistics
Matches: 116, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
65 2 0.02
67 80 0.69
68 4 0.03
69 6 0.05
70 24 0.21
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (68 bp):
TTTTCTTGCAGGGAATCTTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
TCA
Found at i:44421494 original size:102 final size:102
Alignment explanation
Indices: 44421313--44421519 Score: 342
Period size: 102 Copynumber: 2.0 Consensus size: 102
44421303 TTCACTTGTC
* *
44421313 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTGCAGGGAATCTTTCCTGTTCACA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATTATTCTGTTGCAGGGAATCTTTCCTGTTCACA
44421378 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
66 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
* * * *
44421415 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATTATTTTGTTGCAGGGAATCTTTTCTGTTCACA
1 TTTTCTTGCAGGGAATATCTCCTGTTCACACATTATTCTGTTGCAGGGAATCTTTCCTGTTCACA
* *
44421480 TCATTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
66 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
44421517 TTT
1 TTT
44421520 CTTTTTGGAC
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (102 bp):
TTTTCTTGCAGGGAATATCTCCTGTTCACACATTATTCTGTTGCAGGGAATCTTTCCTGTTCACA
TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
Found at i:44423133 original size:29 final size:29
Alignment explanation
Indices: 44423091--44423253 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
44423081 TCATTGACTA
*
44423091 ATGAAAAGGGATAGCTTCAGTTATCAAAT
1 ATGAAAAGGGATAGCTTCAGCTATCAAAT
* * *
44423120 ATGAAAAAGGATAGCTTCAGCTATCGATT
1 ATGAAAAGGGATAGCTTCAGCTATCAAAT
* * * *
44423149 ATGAAAAGGGAT-G-GTGACGACCATCAATT
1 ATGAAAAGGGATAGCTTCA-G-CTATCAAAT
* * * * *
44423178 ATGAAAAGGGAT-GGTGACAACCATCGAAT
1 ATGAAAAGGGATAGCT-TCAGCTATCAAAT
* * * **
44423207 ATGAAAAGGGATCGCTTCGGTTATTGAAT
1 ATGAAAAGGGATAGCTTCAGCTATCAAAT
44423236 ATGAAAAGGGGATAGCTT
1 ATGAAAA-GGGATAGCTT
44423254 TGGCTATTGA
Statistics
Matches: 105, Mismatches: 23, Indels: 11
0.76 0.17 0.08
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 89 0.85
30 11 0.10
31 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCAGCTATCAAAT
Found at i:44423262 original size:30 final size:30
Alignment explanation
Indices: 44423203--44423275 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
44423193 GACAACCATC
* *
44423203 GAATATGAAAA-GGGATCGCTTCGGTTATT
1 GAATATGAAAAGGGGATAGCTTCGGCTATT
*
44423232 GAATATGAAAAGGGGATAGCTTTGGCTATT
1 GAATATGAAAAGGGGATAGCTTCGGCTATT
44423262 G-ATAATGAAAAGGG
1 GAAT-ATGAAAAGGG
44423276 ATGGTGACGA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
29 13 0.33
30 26 0.67
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (30 bp):
GAATATGAAAAGGGGATAGCTTCGGCTATT
Found at i:44423298 original size:29 final size:29
Alignment explanation
Indices: 44423266--44423379 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
44423256 GCTATTGATA
* *
44423266 ATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTTACGACCATCAAAT
* ** *
44423295 ATGAAAAGGGATGGTTTCGACCATTGATT
1 ATGAAAAGGGATGGTTACGACCATCAAAT
* *
44423324 AAAGAAAAGGGATGGTTTCGACCATCAAAT
1 -ATGAAAAGGGATGGTTACGACCATCAAAT
* *
44423354 ATGAAAAGGAACGGTTACGACCATCA
1 ATGAAAAGGGATGGTTACGACCATCA
44423380 TTTAGCACAT
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
29 46 0.65
30 25 0.35
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTACGACCATCAAAT
Found at i:44423298 original size:59 final size:60
Alignment explanation
Indices: 44423233--44423362 Score: 167
Period size: 59 Copynumber: 2.2 Consensus size: 60
44423223 TCGGTTATTG
* * *
44423233 AATATGAAAAGGGGATAGCTTT-GGCTATTGA-TAATGAAAAGGGATGGTGACGACCATCA
1 AATATGAAAAGGGGAT-GCTTTCGACCATTGATTAAAGAAAAGGGATGGTGACGACCATCA
* * **
44423292 ACTATGAAAA-GGGATGGTTTCGACCATTGATTAAAGAAAAGGGATGGTTTCGACCATCA
1 AATATGAAAAGGGGATGCTTTCGACCATTGATTAAAGAAAAGGGATGGTGACGACCATCA
44423351 AATATGAAAAGG
1 AATATGAAAAGG
44423363 AACGGTTACG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 4 0.07
58 12 0.20
59 43 0.72
60 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.24
Consensus pattern (60 bp):
AATATGAAAAGGGGATGCTTTCGACCATTGATTAAAGAAAAGGGATGGTGACGACCATCA
Found at i:44423298 original size:117 final size:116
Alignment explanation
Indices: 44423091--44423309 Score: 339
Period size: 117 Copynumber: 1.9 Consensus size: 116
44423081 TCATTGACTA
*
44423091 ATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAAAGGATAGCTTCAGCTATCGATTATGAAAA
1 ATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAAAGGATAGCTTCAGCTATCGATAATGAAAA
*
44423156 GGGATGGTGACGACCATCAATTATGAAAAGGGATGGTGACAACCATCGAAT
66 GGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGAAT
* * ** * ** *
44423207 ATGAAAAGGGATCGCTTCGGTTATTGAATATGAAAAGGGGATAGCTTTGGCTATTGATAATGAAA
1 ATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAA-AGGATAGCTTCAGCTATCGATAATGAAA
44423272 AGGGATGGTGACGACCATCAACTATGAAAAGGGATGGT
65 AGGGATGGTGACGACCATCAACTATGAAAAGGGATGGT
44423310 TTCGACCATT
Statistics
Matches: 92, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
116 32 0.35
117 60 0.65
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.24
Consensus pattern (116 bp):
ATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAAAGGATAGCTTCAGCTATCGATAATGAAAA
GGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGAAT
Found at i:44423318 original size:117 final size:117
Alignment explanation
Indices: 44423089--44423336 Score: 336
Period size: 117 Copynumber: 2.1 Consensus size: 117
44423079 GATCATTGAC
*
44423089 TAATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAAAGGATAGCTTCAGCTATCGATTATGAA
1 TAATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAAAGGATAGCTTCAGCTATCGATAATGAA
*
44423154 AAGGGATGGTGACGACCATCAATTATGAAAAGGGATGGTGACAACCATCGAA
66 AAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGAA
* * ** * ** *
44423206 T-ATGAAAAGGGATCGCTTCGGTTATTGAATATGAAAAGGGGATAGCTTTGGCTATTGATAATGA
1 TAATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAA-AGGATAGCTTCAGCTATCGATAATGA
** * * *
44423270 AAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTTTCGACCATTGAT
65 AAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGAA
*
44423323 TAAAGAAAAGGGAT
1 TAATGAAAAGGGAT
44423337 GGTTTCGACC
Statistics
Matches: 113, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
116 32 0.28
117 70 0.62
118 11 0.10
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25
Consensus pattern (117 bp):
TAATGAAAAGGGATAGCTTCAGTTATCAAATATGAAAAAGGATAGCTTCAGCTATCGATAATGAA
AAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGAA
Found at i:44423358 original size:88 final size:86
Alignment explanation
Indices: 44423151--44423379 Score: 219
Period size: 88 Copynumber: 2.6 Consensus size: 86
44423141 TATCGATTAT
** * *
44423151 GAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATGGTGACAACCATCGAATATGAAAAGG
1 GAAAAGGGATGGTTTCGACCATCAAATATGAAAAGGGATGGTGACGACCATC-AATATGAAAAGG
*** *
44423216 GATCGCTTCGGTTATTGAATAT
65 GATCGCTTCGACCATTGAATAA
* * * **
44423238 GAAAAGGGGATAGCTTT-GGCTAT-TGATAATGAAAAGGGATGGTGACGACCATCAACTATGAAA
1 GAAAA-GGGAT-GGTTTCGACCATCAAAT-ATGAAAAGGGATGGTGACGACCATCAA-TATGAAA
* * *
44423301 AGGGATGGTTTCGACCATTGATTAAA
62 AGGGATCGCTTCGACCATTGAAT-AA
* * *
44423327 GAAAAGGGATGGTTTCGACCATCAAATATGAAAAGGAACGGTTACGACCATCA
1 GAAAAGGGATGGTTTCGACCATCAAATATGAAAAGGGATGGTGACGACCATCA
44423380 TTTAGCACAT
Statistics
Matches: 111, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
87 12 0.11
88 89 0.80
89 10 0.09
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (86 bp):
GAAAAGGGATGGTTTCGACCATCAAATATGAAAAGGGATGGTGACGACCATCAATATGAAAAGGG
ATCGCTTCGACCATTGAATAA
Found at i:44423375 original size:59 final size:58
Alignment explanation
Indices: 44423259--44423377 Score: 166
Period size: 59 Copynumber: 2.0 Consensus size: 58
44423249 AGCTTTGGCT
* * * * *
44423259 ATTGATAATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTTTCGACC
1 ATTGATAAAGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGAACGGTTACGACC
**
44423317 ATTGATTAAAGAAAAGGGATGGTTTCGACCATCAAATATGAAAAGGAACGGTTACGACC
1 ATTGA-TAAAGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGAACGGTTACGACC
44423376 AT
1 AT
44423378 CATTTAGCAC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 5 0.09
59 48 0.91
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (58 bp):
ATTGATAAAGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGAACGGTTACGACC
Found at i:44427008 original size:32 final size:32
Alignment explanation
Indices: 44426972--44427036 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
44426962 AATAAAAATG
* *
44426972 ATAAATTAAATTAAAAATACTTTTTAAAATAA
1 ATAAATAAAACTAAAAATACTTTTTAAAATAA
44427004 ATAAATAAAACTAAAAATACTTTTTAAAATAA
1 ATAAATAAAACTAAAAATACTTTTTAAAATAA
44427036 A
1 A
44427037 AAGTCTGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (32 bp):
ATAAATAAAACTAAAAATACTTTTTAAAATAA
Found at i:44427402 original size:22 final size:22
Alignment explanation
Indices: 44427377--44427447 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
44427367 CATATTTGTA
*
44427377 GATAAATTGCTAGAAATATGTG
1 GATAAACTGCTAGAAATATGTG
** * **
44427399 GATAAACCACCAG-AAT-TGCA
1 GATAAACTGCTAGAAATATGTG
44427419 GATAAACTGCTAGAAATATGTG
1 GATAAACTGCTAGAAATATGTG
44427441 GATAAAC
1 GATAAAC
44427448 CATCAGAATT
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
20 12 0.33
21 6 0.17
22 18 0.50
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.24
Consensus pattern (22 bp):
GATAAACTGCTAGAAATATGTG
Found at i:44427422 original size:42 final size:42
Alignment explanation
Indices: 44427376--44427475 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
44427366 CCATATTTGT
*
44427376 AGATAAATTGCTAGAAATATGTGGATAAACCACCAGAATTGC
1 AGATAAACTGCTAGAAATATGTGGATAAACCACCAGAATTGC
*
44427418 AGATAAACTGCTAGAAATATGTGGATAAACCATCAGAATTGC
1 AGATAAACTGCTAGAAATATGTGGATAAACCACCAGAATTGC
* *
44427460 AAATAAACTGCCAGAA
1 AGATAAACTGCTAGAA
44427476 CTTCCTCCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (42 bp):
AGATAAACTGCTAGAAATATGTGGATAAACCACCAGAATTGC
Found at i:44427424 original size:20 final size:20
Alignment explanation
Indices: 44427399--44427467 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
44427389 GAAATATGTG
44427399 GATAAACCACCAGAATTGCA
1 GATAAACCACCAGAATTGCA
** * **
44427419 GATAAACTGCTAGAAATATGTG
1 GATAAACCACCAG-AAT-TGCA
*
44427441 GATAAACCATCAGAATTGCA
1 GATAAACCACCAGAATTGCA
*
44427461 AATAAAC
1 GATAAAC
44427468 TGCCAGAACT
Statistics
Matches: 35, Mismatches: 12, Indels: 4
0.69 0.24 0.08
Matches are distributed among these distances:
20 18 0.51
21 6 0.17
22 11 0.31
ACGTcount: A:0.46, C:0.17, G:0.16, T:0.20
Consensus pattern (20 bp):
GATAAACCACCAGAATTGCA
Found at i:44427455 original size:22 final size:22
Alignment explanation
Indices: 44427388--44427455 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
44427378 ATAAATTGCT
*
44427388 AGAAATATGTGGATAAACCACC
1 AGAAATATGTGGATAAACCATC
**
44427410 AG-AAT-TGCAGATAAA-C-TGC
1 AGAAATATGTGGATAAACCAT-C
44427429 TAGAAATATGTGGATAAACCATC
1 -AGAAATATGTGGATAAACCATC
44427452 AGAA
1 AGAA
44427456 TTGCAAATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 12
0.67 0.10 0.23
Matches are distributed among these distances:
19 2 0.06
20 10 0.29
21 6 0.17
22 14 0.40
23 2 0.06
24 1 0.03
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (22 bp):
AGAAATATGTGGATAAACCATC
Found at i:44436198 original size:25 final size:25
Alignment explanation
Indices: 44436124--44436247 Score: 87
Period size: 25 Copynumber: 5.0 Consensus size: 25
44436114 GTACATGTAT
*
44436124 GCTCATACGAGCT-ATGAATCGGTAT
1 GCTCATACGAGCTGA-GAATCGGTAA
* **
44436149 GCTC-TCTCGAGCTGTAG-ATTAGTAA
1 GCTCAT-ACGAGCTG-AGAATCGGTAA
* *
44436174 GCTCATATGAGATGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
* * * *
44436199 ACTC-TCACAAGCT-ACAATCAGTAA
1 GCTCAT-ACGAGCTGAGAATCGGTAA
44436223 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
44436248 TCCTTAATGA
Statistics
Matches: 72, Mismatches: 19, Indels: 16
0.67 0.18 0.15
Matches are distributed among these distances:
24 22 0.31
25 47 0.65
26 2 0.03
27 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGGTAA
Found at i:44436239 original size:49 final size:50
Alignment explanation
Indices: 44436124--44436247 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 50
44436114 GTACATGTAT
** * * ** *
44436124 GCTCATACGAGCT-ATGAATCGGTATGCTCTCTCGAGCTGTAGATTAGTAA
1 GCTCATACGAGCTGA-GAATCGGTAAACTCTCACAAGCTACAGATCAGTAA
* *
44436174 GCTCATATGAGATGAGAATCGGTAAACTCTCACAAGCTACA-ATCAGTAA
1 GCTCATACGAGCTGAGAATCGGTAAACTCTCACAAGCTACAGATCAGTAA
44436223 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
44436248 TCCTTAATGA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 30 0.48
50 31 0.50
51 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (50 bp):
GCTCATACGAGCTGAGAATCGGTAAACTCTCACAAGCTACAGATCAGTAA
Found at i:44442205 original size:20 final size:19
Alignment explanation
Indices: 44442180--44442253 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
44442170 TACCTCTGAA
*
44442180 TTGCACATTGGTGCCCTTG
1 TTGCACATTTGTGCCCTTG
* *
44442199 TTTGCAC-TTCAGTGCCCCTG
1 -TTGCACATT-TGTGCCCTTG
**
44442219 AAGCACATTTGTGCCCTTG
1 TTGCACATTTGTGCCCTTG
44442238 ATTGCACATTTGTGCC
1 -TTGCACATTTGTGCC
44442254 TTTATAAGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
19 14 0.33
20 29 0.67
ACGTcount: A:0.15, C:0.28, G:0.22, T:0.35
Consensus pattern (19 bp):
TTGCACATTTGTGCCCTTG
Found at i:44442264 original size:20 final size:21
Alignment explanation
Indices: 44442219--44442264 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
44442209 AGTGCCCCTG
44442219 AAGCACATTTGTGCCCTTGAT
1 AAGCACATTTGTGCCCTTGAT
* *
44442240 -TGCACATTTGTG-CCTTTAT
1 AAGCACATTTGTGCCCTTGAT
44442259 AAGCAC
1 AAGCAC
44442265 TTCGGTGCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (21 bp):
AAGCACATTTGTGCCCTTGAT
Found at i:44443190 original size:17 final size:18
Alignment explanation
Indices: 44443168--44443201 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
44443158 ATGTGACCCC
*
44443168 TATTTT-CCAAATTTTCA
1 TATTTTACCAAAATTTCA
44443185 TATTTTACCAAAATTTC
1 TATTTTACCAAAATTTC
44443202 TTAATTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTTTACCAAAATTTCA
Found at i:44447404 original size:21 final size:21
Alignment explanation
Indices: 44447359--44447404 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
44447349 ATGGGCTGCT
* ** *
44447359 CACACAGGCGTGTGTGGCCTT
1 CACACAGGCATGTGTCACCTC
44447380 CACACAGGCATGTGTCACCTC
1 CACACAGGCATGTGTCACCTC
44447401 CACA
1 CACA
44447405 TGGACGTGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.35, G:0.24, T:0.20
Consensus pattern (21 bp):
CACACAGGCATGTGTCACCTC
Found at i:44450007 original size:25 final size:25
Alignment explanation
Indices: 44449978--44450029 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
44449968 CAAATTGAGC
44449978 TTATTTTTTTTGTAATTTTTATCTT
1 TTATTTTTTTTGTAATTTTTATCTT
44450003 TTATTTTTTTTGTAATTTTTATCTT
1 TTATTTTTTTTGTAATTTTTATCTT
44450028 TT
1 TT
44450030 GAGGTCGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (25 bp):
TTATTTTTTTTGTAATTTTTATCTT
Found at i:44456643 original size:22 final size:21
Alignment explanation
Indices: 44456601--44456643 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
44456591 TACATTTTTT
*
44456601 TAATTTAAAATGTTAAAATAA
1 TAATTTAAAATGTAAAAATAA
44456622 TAATATTAAAA-GTAAAACATAA
1 TAAT-TTAAAATGTAAAA-ATAA
44456644 GTTAAGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (21 bp):
TAATTTAAAATGTAAAAATAA
Found at i:44457678 original size:45 final size:46
Alignment explanation
Indices: 44457522--44457691 Score: 127
Period size: 45 Copynumber: 3.8 Consensus size: 46
44457512 CATGATTCAA
* * * * *
44457522 ACGACTAAGACCATAGCTAAAAGATACTATGGCATCGT-GATAAA-
1 ACGACTAAGACCATAGATGAAAGATGCTATGGCATCATGGAGAAAT
* * * * * * *
44457566 ATGAGTAAGACCATAGTTGAAAAACGTTATGGCATCATGGCAGAAGT
1 ACGACTAAGACCATAGATGAAAGATGCTATGGCATCATGG-AGAAAT
* * *
44457613 --GAGTAAGACCAT-GGTAGAAAGATGCTATGACATCATGGA-AAAT
1 ACGACTAAGACCATAGAT-GAAAGATGCTATGGCATCATGGAGAAAT
**
44457656 ACGACTAAGACCATAGATGAAAGACACTATGGCATC
1 ACGACTAAGACCATAGATGAAAGATGCTATGGCATC
44457692 CTTTGACAGT
Statistics
Matches: 97, Mismatches: 22, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
43 3 0.03
44 32 0.33
45 57 0.59
46 5 0.05
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (46 bp):
ACGACTAAGACCATAGATGAAAGATGCTATGGCATCATGGAGAAAT
Found at i:44457847 original size:44 final size:44
Alignment explanation
Indices: 44457780--44457881 Score: 150
Period size: 44 Copynumber: 2.3 Consensus size: 44
44457770 TATTCTCTGA
* * *
44457780 AGCTTATGTGAGTAGCATCGTGTATCCGTTAATGTCCTTTTGTT
1 AGCTTGTGTGAGCAACATCGTGTATCCGTTAATGTCCTTTTGTT
*
44457824 AGCTTGTGTGAGCAACATTGTGTATCCGTTAATGTCCTTTTGTT
1 AGCTTGTGTGAGCAACATCGTGTATCCGTTAATGTCCTTTTGTT
* *
44457868 ATCTTGTGTAAGCA
1 AGCTTGTGTGAGCA
44457882 TTACCCTCTT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.42
Consensus pattern (44 bp):
AGCTTGTGTGAGCAACATCGTGTATCCGTTAATGTCCTTTTGTT
Found at i:44459071 original size:19 final size:23
Alignment explanation
Indices: 44459047--44459092 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 23
44459037 GCTTGAGGTC
44459047 ACACGGCC-TG-G-CCTCT-TTT
1 ACACGGCCGTGTGACCTCTGTTT
44459066 ACACGGCCGTGTGACCTCTGTTT
1 ACACGGCCGTGTGACCTCTGTTT
44459089 ACAC
1 ACAC
44459093 TTTGTTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.35
20 2 0.09
21 1 0.04
22 5 0.22
23 7 0.30
ACGTcount: A:0.15, C:0.35, G:0.22, T:0.28
Consensus pattern (23 bp):
ACACGGCCGTGTGACCTCTGTTT
Found at i:44461174 original size:11 final size:11
Alignment explanation
Indices: 44461158--44461200 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
44461148 ATTTTGCATA
44461158 AAAATGATTTT
1 AAAATGATTTT
44461169 AAAATGATTTT
1 AAAATGATTTT
* *
44461180 AAACTTATTTT
1 AAAATGATTTT
*
44461191 AACATGATTT
1 AAAATGATTT
44461201 AGAGGTTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.47
Consensus pattern (11 bp):
AAAATGATTTT
Found at i:44468499 original size:60 final size:60
Alignment explanation
Indices: 44468433--44468809 Score: 373
Period size: 60 Copynumber: 6.3 Consensus size: 60
44468423 ACAAGGAATG
* * ** * *
44468433 CCAAGGCCTCCATTTGGTGTGGGTAGCTCCTCAAATGTTGTTGCTAATGGCTTGGGGTTG
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTGATCACTTGGGGCTA
* * * * * * *
44468493 CCAAGGCCTCCATTTAGTAAGGGCAACTCCTCAAATGTTGCTGCTTATGTA-TTGGGGCTA
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTGAT-CACTTGGGGCTA
* ** * **
44468553 CC-AGGCCCTCTAGCTGGTGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTCAGGGCTA
1 CCAAGG-CCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTGATCACTTGGGGCTA
* * * * **
44468613 CCAATGCCTTCATTTGGTGAGGGTAGCTCCTTAAATGTTGCTT-CTGATCACTTAGGATTA
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTG-TTGCTGATCACTTGGGGCTA
* * * * * *
44468673 CCAAGGCTTCCATTTGGTGAAGGTCGCTCCTCAAATATTGTTGTTGATCATTTGGGGCTA
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTGATCACTTGGGGCTA
* * *
44468733 CCAAGGCCTCCGTTTGGGGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTTGGGGCTA
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTGATCACTTGGGGCTA
* * *
44468793 CAAAGACCACCATTTGG
1 CCAAGGCCTCCATTTGG
44468810 CAGTAGTTCA
Statistics
Matches: 254, Mismatches: 57, Indels: 12
0.79 0.18 0.04
Matches are distributed among these distances:
59 6 0.02
60 244 0.96
61 4 0.02
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (60 bp):
CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTGATCACTTGGGGCTA
Found at i:44468730 original size:180 final size:180
Alignment explanation
Indices: 44468433--44468809 Score: 433
Period size: 180 Copynumber: 2.1 Consensus size: 180
44468423 ACAAGGAATG
* ** * * *
44468433 CCAAGGCCTCCATTTGGTGTGGGTAGCTCCTCAAATGTTGTTGCTAATGGCTTGGGGTTGCCAAG
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTAATCACTTAGGATTACCAAG
* *
44468498 GCCTCCATTTAGTAAGGGCAACTCCTCAAATGTTGCTGCTTATGTATTGGGGCTACC-AGGCCCT
66 GCCTCCATTTAGTAAGGGCAACTCCTCAAATATTGCTGCTTATATATTGGGGCTACCAAGG-CCT
*
44468562 CTAG-CTGGTGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTCAGGGCTA
130 C-AGTCTGGGGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTCAGGGCTA
* * * *
44468613 CCAATGCCTTCATTTGGTGAGGGTAGCTCCTTAAATGTTGCTT-CTGATCACTTAGGATTACCAA
1 CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTG-TTGCTAATCACTTAGGATTACCAA
* * * * *
44468677 GGCTTCCATTTGGTGAAGGTC-GCTCCTCAAATATTGTTG-TTGATCAT-TTGGGGCTACCAAGG
65 GGCCTCCATTTAGT-AAGGGCAACTCCTCAAATATTGCTGCTT-AT-ATATTGGGGCTACCAAGG
* * **
44468739 CCTCCGTTTGGGGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTTGGGGCTA
127 CCTCAGTCTGGGGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTCAGGGCTA
* * *
44468793 CAAAGACCACCATTTGG
1 CCAAGGCCTCCATTTGG
44468810 CAGTAGTTCA
Statistics
Matches: 164, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
179 3 0.02
180 150 0.91
181 11 0.07
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (180 bp):
CCAAGGCCTCCATTTGGTGAGGGTAGCTCCTCAAATGTTGTTGCTAATCACTTAGGATTACCAAG
GCCTCCATTTAGTAAGGGCAACTCCTCAAATATTGCTGCTTATATATTGGGGCTACCAAGGCCTC
AGTCTGGGGAGGGTAGCTCCTCAAATGTTGTTGTTGATCACTCAGGGCTA
Found at i:44487082 original size:63 final size:62
Alignment explanation
Indices: 44486945--44487129 Score: 244
Period size: 63 Copynumber: 3.0 Consensus size: 62
44486935 TGCAGGGTTC
* * * *
44486945 ACACGGGCGTGTGTCCAGGCCATGTGACTCACTGTTGTGATTAGAGATCACACGGGACAAGG
1 ACACGGGCGTGTGTCCAGGCCATGTGACTCACTGTTGTGTTTAGAGAACACACGGGCCAAAG
* * * *
44487007 ACACGGGCGTGTGTCCAGGCCATGCGAATCACTATCGTGTTTTAGAGAACACACGGGCCAAAG
1 ACACGGGCGTGTGTCCAGGCCATGTGACTCACTGTTGTG-TTTAGAGAACACACGGGCCAAAG
* * * *
44487070 ACACGGGCGTGTGTCCGGGCCATGTGACTCACTGTTATGATTTAGAGACCACATGGGCCA
1 ACACGGGCGTGTGTCCAGGCCATGTGACTCACTGTTGTG-TTTAGAGAACACACGGGCCA
44487130 GTGACACAAG
Statistics
Matches: 105, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
62 35 0.33
63 70 0.67
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.21
Consensus pattern (62 bp):
ACACGGGCGTGTGTCCAGGCCATGTGACTCACTGTTGTGTTTAGAGAACACACGGGCCAAAG
Found at i:44492744 original size:63 final size:63
Alignment explanation
Indices: 44492672--44492908 Score: 255
Period size: 63 Copynumber: 3.8 Consensus size: 63
44492662 CCATTGTTTT
* * *
44492672 TCCAGGCCGTGTGAATCACTATTGTGATTTAGAGACCACACGGGCCA-AGGAAACTGGCGTGTG
1 TCCAGGCCGTGTGACTCACTATTGTGATTTAGAGACCACACGGGCCAGA-GACACTGGCATGTG
* * ** * * *
44492735 TCCAGGCCGTGTGACTCACTGTTGTGATTCAGAGACCACACAAGCTAGAGACACGGGCATGTT
1 TCCAGGCCGTGTGACTCACTATTGTGATTTAGAGACCACACGGGCCAGAGACACTGGCATGTG
* * ** * * *
44492798 TACAAGCCGTGTGACTCACTGCTATGATTTAAAGGCCACACGGGCCAGAGACACTGGCATGTG
1 TCCAGGCCGTGTGACTCACTATTGTGATTTAGAGACCACACGGGCCAGAGACACTGGCATGTG
* **
44492861 TCCGGGCTATGTGACTCACTATTTGTGATTTAG-GACCACAC-GGCCAGA
1 TCCAGGCCGTGTGACTCACTA-TTGTGATTTAGAGACCACACGGGCCAGA
44492909 CAACACGGGT
Statistics
Matches: 140, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
62 7 0.05
63 124 0.89
64 9 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (63 bp):
TCCAGGCCGTGTGACTCACTATTGTGATTTAGAGACCACACGGGCCAGAGACACTGGCATGTG
Found at i:44492915 original size:126 final size:126
Alignment explanation
Indices: 44492677--44492922 Score: 291
Period size: 126 Copynumber: 2.0 Consensus size: 126
44492667 GTTTTTCCAG
* * * *
44492677 GCCGTGTGAATCACTATTGTGATTTAGAGACCACACGGGCCAAGGAAACTGGCGTGTGTCCAGGC
1 GCCGTGTGAATCACTACTATGATTTAAAGACCACACGGGCCAAGGAAACTGGCATGTGTCCAGGC
* * *
44492742 CGTGTGACTCACTGTTGTGATTCAGAGACCACACAAGCTAGAGACACGGGCATGTTTACAA
66 CATGTGACTCACTGTTGTGATTCAGAGACCACACAAGCCAGAAACACGGGCATGTTTACAA
* * * * *
44492803 GCCGTGTGACTCACTGCTATGATTTAAAGGCCACACGGGCC-AGAGACACTGGCATGTGTCCGGG
1 GCCGTGTGAATCACTACTATGATTTAAAGACCACACGGGCCAAG-GAAACTGGCATGTGTCCAGG
* * * * *
44492867 CTATGTGACTCACTATTTGTGATTTAG-GACCACAC-GGCCAGACAACACGGGTATGT
65 CCATGTGACTCACT-GTTGTGATTCAGAGACCACACAAGCCAGA-AACACGGGCATGT
44492923 AGGTCAGGGT
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
125 7 0.07
126 83 0.83
127 10 0.10
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (126 bp):
GCCGTGTGAATCACTACTATGATTTAAAGACCACACGGGCCAAGGAAACTGGCATGTGTCCAGGC
CATGTGACTCACTGTTGTGATTCAGAGACCACACAAGCCAGAAACACGGGCATGTTTACAA
Found at i:44500033 original size:3 final size:3
Alignment explanation
Indices: 44500025--44500049 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
44500015 TTGATGTAAA
44500025 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
44500050 TGGTAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:44506263 original size:31 final size:32
Alignment explanation
Indices: 44506223--44506292 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
44506213 TTAATTAAGT
* *
44506223 ATTTATTAATTATTTATTGGT-TTTGGCTT-GTA
1 ATTT-TTAATTAGTT-TTGGTCTGTGGCTTGGTA
44506255 ATTTTTAATTAGTTTTGGTCTGTGGCTTGGTA
1 ATTTTTAATTAGTTTTGGTCTGTGGCTTGGTA
*
44506287 ACTTTT
1 ATTTTT
44506293 CTTTTGGGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 5 0.15
31 16 0.48
32 12 0.36
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.57
Consensus pattern (32 bp):
ATTTTTAATTAGTTTTGGTCTGTGGCTTGGTA
Found at i:44507288 original size:15 final size:15
Alignment explanation
Indices: 44507268--44507324 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
44507258 TAGGCGAGAT
44507268 AATTAAATAATTAAG
1 AATTAAATAATTAAG
* * *
44507283 AATTAATTAAATAAA
1 AATTAAATAATTAAG
44507298 ATATTAAAATAATT-AG
1 A-ATT-AAATAATTAAG
44507314 AATTAAA-AATT
1 AATTAAATAATT
44507325 CTATTTTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
13 4 0.12
14 3 0.09
15 16 0.47
16 5 0.15
17 6 0.18
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (15 bp):
AATTAAATAATTAAG
Found at i:44507303 original size:23 final size:24
Alignment explanation
Indices: 44507268--44507321 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 24
44507258 TAGGCGAGAT
44507268 AATT-AAATAATTAAGAATTAATTA-
1 AATTAAAATAATTAA-AA-TAATTAG
44507292 AA-TAAAAT-ATTAAAATAATTAG
1 AATTAAAATAATTAAAATAATTAG
44507314 AATTAAAA
1 AATTAAAA
44507322 ATTCTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
21 6 0.22
22 4 0.15
23 11 0.41
24 6 0.22
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (24 bp):
AATTAAAATAATTAAAATAATTAG
Found at i:44508570 original size:43 final size:43
Alignment explanation
Indices: 44508457--44508580 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 43
44508447 GCCCTACAGT
44508457 ATGTTATGCAAACCATGTTATAATTTCA-GCAAGCTTTGCAAC
1 ATGTTATGCAAACCATGTTATAATTTCATGCAAGCTTTGCAAC
** * * *
44508499 ATGTTATGTGAACCATGTTATAAATTCATGCTAGCTTTGCAGC
1 ATGTTATGCAAACCATGTTATAATTTCATGCAAGCTTTGCAAC
* * *
44508542 ATGTTATGCAAATCATGTTATATTTTCATTCAAGCTTTG
1 ATGTTATGCAAACCATGTTATAATTTCATGCAAGCTTTG
44508581 TGGTATGATG
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 25 0.36
43 44 0.64
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (43 bp):
ATGTTATGCAAACCATGTTATAATTTCATGCAAGCTTTGCAAC
Found at i:44508756 original size:25 final size:25
Alignment explanation
Indices: 44508729--44508857 Score: 150
Period size: 25 Copynumber: 5.2 Consensus size: 25
44508719 TCTACCTTGT
* * * *
44508729 TGATATGCGAATATGTTATGTTGAT
1 TGATATGTGAACATGCTATGTTGAA
*
44508754 TGATATGTGAACATGTTATGTTGAA
1 TGATATGTGAACATGCTATGTTGAA
* * * *
44508779 TGATGTATGAACATGATAGGTTGAA
1 TGATATGTGAACATGCTATGTTGAA
*
44508804 TGATATGTGAACATGCTAGGTTGAA
1 TGATATGTGAACATGCTATGTTGAA
**
44508829 TGATATGCAAACATGCTATGTTGAA
1 TGATATGTGAACATGCTATGTTGAA
44508854 TGAT
1 TGAT
44508858 GTACGAACAT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 91 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATATGTGAACATGCTATGTTGAA
Found at i:44508833 original size:75 final size:72
Alignment explanation
Indices: 44508729--44508887 Score: 201
Period size: 75 Copynumber: 2.2 Consensus size: 72
44508719 TCTACCTTGT
* * * * ** * *
44508729 TGATATGCGAATATGTTATGTTGATTGATATGTGAACATGTTATGTTGAATGATGTATGAACATG
1 TGATATGCGAACATGCTAGGTTGAATGATATGCAAACATGCTATGTTGAATGATGTACGAACAT-
*
44508794 ATAGGTTGAA
65 ATA--TTAAA
*
44508804 TGATATGTGAACATGCTAGGTTGAATGATATGCAAACATGCTATGTTGAATGATGTACGAACATA
1 TGATATGCGAACATGCTAGGTTGAATGATATGCAAACATGCTATGTTGAATGATGTACGAACATA
44508869 TATTAAA
66 TATTAAA
44508876 TGATATGCGAAC
1 TGATATGCGAAC
44508888 CCTCACATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
72 15 0.21
74 3 0.04
75 55 0.75
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (72 bp):
TGATATGCGAACATGCTAGGTTGAATGATATGCAAACATGCTATGTTGAATGATGTACGAACATA
TATTAAA
Found at i:44509076 original size:16 final size:16
Alignment explanation
Indices: 44509055--44509086 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
44509045 GTGAACCTGC
44509055 CCATAGTGCGAACCCT
1 CCATAGTGCGAACCCT
*
44509071 CCATAGTGTGAACCCT
1 CCATAGTGCGAACCCT
44509087 TTGTGCGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.22
Consensus pattern (16 bp):
CCATAGTGCGAACCCT
Found at i:44509385 original size:45 final size:45
Alignment explanation
Indices: 44509313--44509466 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 45
44509303 TTTGACTTCC
* ** * * *
44509313 ATGTGATATGCGAACTTACATTAAAGTGACATGTGAACCTATGCT
1 ATGTGATATGCGAACCTATGTTAAAGTGATATGTGAACCTAAGTT
* ** *
44509358 ATGTGATATGCGAACCTATGTTTAAGTGATATGCAAATCTAAGTT
1 ATGTGATATGCGAACCTATGTTAAAGTGATATGTGAACCTAAGTT
* * * * *
44509403 ATATGGTATGCAAACTTATGCTAAAGTGATATGTGAACCTAAGTT
1 ATGTGATATGCGAACCTATGTTAAAGTGATATGTGAACCTAAGTT
* *
44509448 ATGTGGTATGAGAA-CTATG
1 ATGTGATATGCGAACCTATG
44509467 ACTTATGTGA
Statistics
Matches: 86, Mismatches: 23, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
44 4 0.05
45 82 0.95
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (45 bp):
ATGTGATATGCGAACCTATGTTAAAGTGATATGTGAACCTAAGTT
Done.