Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 155 of 228
Found at i:46648315 original size:58 final size:59
Alignment explanation
Indices: 46648184--46648330 Score: 201
Period size: 58 Copynumber: 2.5 Consensus size: 59
46648174 TATACAGAAT
* * *
46648184 AGGGGCACTAAAGTGCGAACA-GGGCACAAACGTGCAAACGGGGACACTGAATTGTATAC
1 AGGGGCACCAAAGTGCGAACAGGGGCACAAACGTGCAAAC-GGGACACTAAAGTGTATAC
* **
46648243 AAGGGCA-CGTAGTGCGAACAGGGGCACAAACGTGCAAA-GGGACACTAAAGTGTATAC
1 AGGGGCACCAAAGTGCGAACAGGGGCACAAACGTGCAAACGGGACACTAAAGTGTATAC
*
46648300 AGGGGTACCAAAGTGCGAACAGGGGCACAAA
1 AGGGGCACCAAAGTGCGAACAGGGGCACAAA
46648331 TGTGTGTTCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
57 22 0.29
58 31 0.41
59 23 0.30
ACGTcount: A:0.37, C:0.20, G:0.32, T:0.12
Consensus pattern (59 bp):
AGGGGCACCAAAGTGCGAACAGGGGCACAAACGTGCAAACGGGACACTAAAGTGTATAC
Found at i:46648366 original size:20 final size:20
Alignment explanation
Indices: 46648322--46648399 Score: 54
Period size: 20 Copynumber: 3.9 Consensus size: 20
46648312 GTGCGAACAG
*
46648322 GGGCACAAATGTG--TGTTCA
1 GGGCACAAATGTGCAT-TTAA
46648341 GTGGCACAAATGTGCATTTAA
1 G-GGCACAAATGTGCATTTAA
*** *
46648362 GGGCACCAAA-GTGCAAACAG
1 GGGCA-CAAATGTGCATTTAA
*
46648382 GGGCACTAATGTGCATTT
1 GGGCACAAATGTGCATTT
46648400 CAGGAACACT
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
19 4 0.09
20 32 0.71
21 8 0.18
22 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (20 bp):
GGGCACAAATGTGCATTTAA
Found at i:46653248 original size:24 final size:21
Alignment explanation
Indices: 46653195--46653240 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
46653185 TTGCTATTAA
46653195 TTATTTATTACATTATTATTT
1 TTATTTATTACATTATTATTT
*
46653216 TTA-TTATTACATGA-TA-TT
1 TTATTTATTACATTATTATTT
46653234 TTATTTA
1 TTATTTA
46653241 ATTTATTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 5 0.22
20 10 0.43
21 3 0.13
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTTATTACATTATTATTT
Found at i:46664910 original size:44 final size:43
Alignment explanation
Indices: 46664849--46665232 Score: 192
Period size: 44 Copynumber: 8.7 Consensus size: 43
46664839 GATCCTGGCG
* * *
46664849 AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCCAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAA
* * *
46664892 TAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTAC-A
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--ACAA
* * * * *
46664937 AGTCTTATCTCCCTGAAGTTGCAATGGAGTAGATT-AAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA--A
* * *
46664981 AATCTTATCT-CCTGAAGTTGCAGTGGAGCAAATTGAAGTTGC-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--ACAA
* * * **
46665024 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGA-TG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAA-GACAA
* * * * * *
46665068 AATCCTATGC-CTCTAAAGTTGCAGTAGG-TCGGATTAAATCTACCATA
1 AATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATTAAA--GA-CA-A
* * **
46665115 GCAAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TGA
1 --AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAA
* * * * * *
46665160 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATATCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA--A
*
46665205 AATCTTAT-TCCCCTGAAGTTACAGTGGA
1 AATCTTATCT-CCCTGAAGTTGCAGTGGA
46665233 ACAGGTTGAA
Statistics
Matches: 259, Mismatches: 54, Indels: 53
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.00
42 34 0.13
43 38 0.15
44 125 0.48
45 30 0.12
46 2 0.01
49 5 0.02
50 24 0.09
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAA
Found at i:46665028 original size:131 final size:128
Alignment explanation
Indices: 46664593--46665061 Score: 396
Period size: 129 Copynumber: 3.5 Consensus size: 128
46664583 TCCTATACCA
* * * *
46664593 CTGAAGTGGCAGTGGAATAGATTGAAGAAGATGACAAATCTTATCTCCCTGAAGTTGTAGTAGAG
1 CTGAAGTTGCAGTGGAGTAGATT---GAAG-TG-CAAATCCTATCTCCCTGAAGTTGTAGTGGAG
* ** * * * *
46664658 TAGATTAAAGCCA-ATAATAC-TATCTCCCT-AAGTTGCAATGAGTGGATTGA-AATGAAGTCTT
61 CAGATTAAAGTTACACAGT-CTTATCTCCCTGAAGTTGCAATGAGTAGATTGATAGTGAA-TCTT
46664719 ATCTCC
124 ATCT-C
* * * * * *
46664725 CTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATTTTCCTAAAGTTGTAGTGGAACAG
1 CTGAAGTTGCAGTGGAGTAGATTGAAG-T-GCAAATCCTATCTCCCTGAAGTTGTAGTGGAGCAG
* * * ** * *
46664790 ATTAAAGCTATAAATCACAGATCTTATCT-TCTGAAGTTGTAGTAGAGTAGA-TCCTGGCGAATC
64 ATTAAAG-T-T--A-CACAG-TCTTATCTCCCTGAAGTTGCAAT-GAGTAGATTGATAGTGAATC
46664853 TTATCTC
122 TTATCTC
* *
46664860 TCTGAAGTTGCAGTGGAGTAGATTAAAG-CCAATAATCCTATCTCCCTGAAGTTGTAGTGGAGCA
1 -CTGAAGTTGCAGTGGAGTAGATTGAAGTGC-A-AATCCTATCTCCCTGAAGTTGTAGTGGAGCA
*
46664924 GATTGAAGTTACA-AGTCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAGATAGTGAATCTTA
63 GATTAAAGTTACACAGTCTTATCTCCCTGAAGTTGCAAT-GAGTAGATT--GATAGTGAATCTTA
46664988 TCTC
125 TCTC
* * *
46664992 CTGAAGTTGCAGTGGAGCAAATTGAAGTTGCAAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGA
1 CTGAAGTTGCAGTGGAGTAGATTGAAG-TGCAAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGA
46665057 TTAAA
65 TTAAA
46665062 ATGATGAATC
Statistics
Matches: 271, Mismatches: 45, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
128 8 0.03
129 61 0.23
130 4 0.01
131 61 0.23
132 35 0.13
133 4 0.01
134 2 0.01
135 39 0.14
136 48 0.18
137 9 0.03
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (128 bp):
CTGAAGTTGCAGTGGAGTAGATTGAAGTGCAAATCCTATCTCCCTGAAGTTGTAGTGGAGCAGAT
TAAAGTTACACAGTCTTATCTCCCTGAAGTTGCAATGAGTAGATTGATAGTGAATCTTATCTC
Found at i:46665070 original size:87 final size:87
Alignment explanation
Indices: 46664849--46665232 Score: 291
Period size: 87 Copynumber: 4.3 Consensus size: 87
46664839 GATCCTGGCG
*
46664849 AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCCA-AT-AATCCTATCTCCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAA---ATATGAATCCTATCTCCCTGAAGT
* *
46664912 TGTAGTGGAGCAGATTGAAGTTACA
63 TGCAGTGGAGCAAATTGAAGTTACA
* * * *
46664937 AGTCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAGATAGTGAATCTTATCT-CCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAATA-TGAATCCTATCTCCCTGAAGTTG
*
46665001 CAGTGGAGCAAATTGAAGTTGCA
65 CAGTGGAGCAAATTGAAGTTACA
* * ** * *
46665024 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATGAATCCTATGC-CTCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAAT-ATGAATCCTAT-CTCCCTGAAGTT
* ** *
46665088 GCAGTAGG-TCGGATT-AAATCTACCATA
64 GCAGT-GGAGCAAATTGAAGT-TA-C--A
* * * * * *
46665115 GCAAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GAA-GTGAAGTCTTATCTCCCTAAAG
1 --AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAATATGAA-TCCTATCTCCCTGAAG
* * * *
46665178 TTGCAGTGGAGCAGACTGAAGATATCG
62 TTGCAGTGGAGCAAATTGAAGTTA-CA
*
46665205 AATCTTAT-TCCCCTGAAGTTACAGTGGA
1 AATCTTATCT-CCCTGAAGTTGCAGTGGA
46665233 ACAGGTTGAA
Statistics
Matches: 237, Mismatches: 40, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
85 1 0.00
86 2 0.01
87 98 0.41
88 64 0.27
89 3 0.01
91 8 0.03
92 26 0.11
93 6 0.03
94 29 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (87 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAATATGAATCCTATCTCCCTGAAGTTGC
AGTGGAGCAAATTGAAGTTACA
Found at i:46665103 original size:131 final size:132
Alignment explanation
Indices: 46664848--46665192 Score: 328
Period size: 131 Copynumber: 2.6 Consensus size: 132
46664838 AGATCCTGGC
* * *
46664848 GAATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAG-CCAATAATCCTATCTCCCTGAAGT
1 GAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTGAAGTGC-A-AATCCTATCTCCCTGAAGT
* * * * * *
46664912 TGTAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAGA-
63 TGTAGTGGAGCAGATTAAAATGACAAGTCCTATCTCCCTAAAGTTGCAATAGAGTAGATTAA-AC
*
46664976 TA-GT-
127 TACATA
*
46664980 GAATCTTATCTCCTGAAGTTGCAGTGGAGCAAATTGAAGTTGCAAATCCTATCTCCCTGAAGTTG
1 GAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTGAAG-TGCAAATCCTATCTCCCTGAAGTTG
* * * * *
46665045 TAGTGGAGCGGATTAAAATGATGAA-TCCTATGC-CTCTAAAGTTGCAGTAG-GTCGGATTAAAT
65 TAGTGGAGCAGATTAAAATGA-CAAGTCCTAT-CTCCCTAAAGTTGCAATAGAGT-AGATTAAA-
46665107 CTACCATA
126 CTA-CATA
* * * *
46665115 GCAAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTG-AAGTCTTATCTCCCTAAAGT
1 G-AA-TCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGTGCAAATCCTATCTCCCTGAAGT
*
46665179 TGCAGTGGAGCAGA
63 TGTAGTGGAGCAGA
46665193 CTGAAGATAT
Statistics
Matches: 177, Mismatches: 23, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
130 3 0.02
131 86 0.49
132 18 0.10
133 1 0.01
134 1 0.01
135 1 0.01
136 31 0.18
137 9 0.05
138 27 0.15
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (132 bp):
GAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTGAAGTGCAAATCCTATCTCCCTGAAGTTGT
AGTGGAGCAGATTAAAATGACAAGTCCTATCTCCCTAAAGTTGCAATAGAGTAGATTAAACTACA
TA
Found at i:46665230 original size:45 final size:42
Alignment explanation
Indices: 46665117--46665232 Score: 137
Period size: 42 Copynumber: 2.7 Consensus size: 42
46665107 CTACCATAGC
* *
46665117 AAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTG
*
46665159 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATATCG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG---T-G
*
46665205 AA-TCTTAT-TCCCCTGAAGTTACAGTGGA
1 AAGTCTTATCT-CCCTGAAGTTGCAGTGGA
46665233 ACAGGTTGAA
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
42 37 0.58
44 1 0.02
45 23 0.36
46 3 0.05
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (42 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTG
Found at i:46669230 original size:41 final size:41
Alignment explanation
Indices: 46669159--46669352 Score: 255
Period size: 41 Copynumber: 4.8 Consensus size: 41
46669149 GTTTTGGGGA
* * * **
46669159 TTTAGTGGC-TTTTTTAAGAAGCGCTGCTAATGCTCTATTC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTGGTC
* * * *
46669199 TTTAACGGCGTTTTTAAATAAGCGCCACTAATACTCTGGTC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTGGTC
*
46669240 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTGGTC
* * *
46669281 TTTAGCGGTGTTTTTGAATAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTGGTC
*
46669322 TTTAGCGGCATTTTTAAAGAAGCGCCGCTAA
1 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAA
46669353 AAACATTTTA
Statistics
Matches: 133, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 7 0.05
41 126 0.95
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTGGTC
Found at i:46669681 original size:21 final size:21
Alignment explanation
Indices: 46669656--46669700 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
46669646 GAGTATGGGT
*
46669656 TTAGGGA-TTATGGTTTAAGGG
1 TTAGGGATTTAAGGTTT-AGGG
46669677 TTA-GGATTTAAGGTTTAGGG
1 TTAGGGATTTAAGGTTTAGGG
46669697 TTAG
1 TTAG
46669701 AAGGTTAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.24, C:0.00, G:0.36, T:0.40
Consensus pattern (21 bp):
TTAGGGATTTAAGGTTTAGGG
Found at i:46669987 original size:49 final size:49
Alignment explanation
Indices: 46669889--46670001 Score: 151
Period size: 49 Copynumber: 2.3 Consensus size: 49
46669879 GAGTTCATAT
* *
46669889 TTTAAGGTTTAGGGAGTATGGATTAGTGATTATGGTTTAAGGGTTGGGA
1 TTTAAGGTTTAGGGAGTATGGATTAGTGATTAGGGTTTAAGAGTTGGGA
*
46669938 TTTAAGGTTTAGGG-GT-TAGGGTTAGATG-TTAGGGTTTAAGAGTTAGGGA
1 TTTAAGGTTTAGGGAGTAT-GGATTAG-TGATTAGGGTTTAAGAGTT-GGGA
46669987 TTTAAGGTTTAGGGA
1 TTTAAGGTTTAGGGA
46670002 TTCAGGGGTC
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
47 1 0.02
48 22 0.39
49 34 0.60
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (49 bp):
TTTAAGGTTTAGGGAGTATGGATTAGTGATTAGGGTTTAAGAGTTGGGA
Found at i:46669992 original size:15 final size:14
Alignment explanation
Indices: 46669965--46670003 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
46669955 AGGGTTAGAT
46669965 GTTAGGG-TTTAAG
1 GTTAGGGATTTAAG
46669978 AGTTAGGGATTTAAG
1 -GTTAGGGATTTAAG
46669993 GTTTAGGGATT
1 G-TTAGGGATT
46670004 CAGGGGTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (14 bp):
GTTAGGGATTTAAG
Found at i:46670023 original size:49 final size:48
Alignment explanation
Indices: 46669889--46670023 Score: 128
Period size: 49 Copynumber: 2.8 Consensus size: 48
46669879 GAGTTCATAT
* ** * * * *
46669889 TTTAAGGTTTAGGGAGTATGGATTAGTGATTATGGTTTAAGGGTTGGGA
1 TTTAAGGTTTAGGGATTA-GGGGTAGAGGTTAAGGTTTAAGAGTTGGGA
* * * *
46669938 TTTAAGGTTTAGGGGTTAGGGTTAGATGTTAGGGTTTAAGAGTTAGGGA
1 TTTAAGGTTTAGGGATTAGGGGTAGAGGTTAAGGTTTAAGAGTT-GGGA
*
46669987 TTTAAGGTTTAGGGATTCAGGGGTCG-GGTTAAGGTTT
1 TTTAAGGTTTAGGGATT-AGGGGTAGAGGTTAAGGTTT
46670024 TGAGTTTAGA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
48 20 0.28
49 45 0.63
50 6 0.08
ACGTcount: A:0.23, C:0.01, G:0.38, T:0.38
Consensus pattern (48 bp):
TTTAAGGTTTAGGGATTAGGGGTAGAGGTTAAGGTTTAAGAGTTGGGA
Found at i:46671791 original size:12 final size:12
Alignment explanation
Indices: 46671770--46671804 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
46671760 TTTTGCTTAA
*
46671770 ACTGGATTGTAG
1 ACTGGTTTGTAG
46671782 ACTGGTTTGTAG
1 ACTGGTTTGTAG
*
46671794 ATTGGTTTGTA
1 ACTGGTTTGTA
46671805 TACTCTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.20, C:0.06, G:0.31, T:0.43
Consensus pattern (12 bp):
ACTGGTTTGTAG
Found at i:46687730 original size:40 final size:40
Alignment explanation
Indices: 46687578--46687750 Score: 167
Period size: 40 Copynumber: 4.4 Consensus size: 40
46687568 TCGAATGATG
* * *
46687578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * ** *
46687618 TCCGGACAAAGAT-CTGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
* *
46687658 TCC-GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
*
46687696 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
*
46687737 -CCGGGCTATGTCCC
1 TCCGGGCTAAGTCCC
46687751 CGACCCAAGG
Statistics
Matches: 107, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 26 0.24
39 11 0.10
40 61 0.57
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:46695880 original size:79 final size:81
Alignment explanation
Indices: 46695744--46695926 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
46695734 TCGAATGATG
* *
46695744 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
46695808 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
46695823 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
46695885 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
46695903 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
46695927 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:46695942 original size:40 final size:40
Alignment explanation
Indices: 46695745--46695928 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
46695735 CGAATGATGT
* * * *
46695745 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
46695785 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
46695825 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46695863 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46695904 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46695929 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:46695950 original size:79 final size:79
Alignment explanation
Indices: 46695797--46695961 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
46695787 GGACTAAGAT
* **
46695797 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
46695862 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
46695876 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
46695939 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46695955 CCGAAGG
1 CCGAAGG
46695962 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46701517 original size:18 final size:18
Alignment explanation
Indices: 46701493--46701562 Score: 90
Period size: 18 Copynumber: 3.9 Consensus size: 18
46701483 AGTAAAACCT
*
46701493 AATATAAATAATAAT-GTA
1 AATAT-AATAATAATAATA
*
46701511 CATATAATAATAATAATA
1 AATATAATAATAATAATA
46701529 AATATAATAATAATAAT-
1 AATATAATAATAATAATA
46701546 AATAATAATAATAATAA
1 AAT-ATAATAATAATAA
46701563 ACCAATTAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
17 12 0.26
18 35 0.74
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (18 bp):
AATATAATAATAATAATA
Found at i:46701520 original size:3 final size:3
Alignment explanation
Indices: 46701514--46701562 Score: 82
Period size: 3 Copynumber: 16.3 Consensus size: 3
46701504 TAATGTACAT
46701514 ATA ATA ATA ATA ATA A-A TATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
46701559 ATA A
1 ATA A
46701563 ACCAATTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 1 0.02
3 42 0.95
4 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:46702623 original size:16 final size:16
Alignment explanation
Indices: 46702554--46702621 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
46702544 TTTGGTTCGC
46702554 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
46702570 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
46702586 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
46702602 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
46702618 TGTA
1 TGTA
46702622 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:46702656 original size:45 final size:44
Alignment explanation
Indices: 46702602--46702696 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
46702592 GGATTAGAGG
* *
46702602 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
46702647 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
46702691 TGTAAT
1 TGTAAT
46702697 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:46702879 original size:18 final size:17
Alignment explanation
Indices: 46702858--46702892 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
46702848 TTATTATTTA
46702858 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
46702876 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
46702893 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:46703061 original size:47 final size:46
Alignment explanation
Indices: 46702995--46703161 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 46
46702985 TTAATTAAAA
*
46702995 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTATCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTATCT
* * * * * *
46703042 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
* * * *
46703087 TA-AT-AATAATATATAATTTCATAA-AATTCTTAATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTATCT
*
46703133 TATATGAATTTATACAATTTAAAATAATT
1 TATATGAATTTATATAATTTAAAATAATT
46703162 CGGATCAATC
Statistics
Matches: 92, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
43 3 0.03
44 15 0.16
45 14 0.15
46 13 0.14
47 40 0.43
48 7 0.08
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
Found at i:46703083 original size:26 final size:28
Alignment explanation
Indices: 46703054--46703125 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
46703044 TATGAATTTG
*
46703054 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
46703080 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
46703108 TAAAATTCTTAATAATAA
1 TATAA-T-TTAATAATAA
46703126 ATTTTCTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 10 0.26
27 6 0.15
28 12 0.31
29 1 0.03
30 10 0.26
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:46703321 original size:22 final size:22
Alignment explanation
Indices: 46703293--46703337 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
46703283 ACTAAGCTTG
46703293 AATTTCATTAAATTACTTTCAA
1 AATTTCATTAAATTACTTTCAA
46703315 AATTTCATTAAATTACTTTCAA
1 AATTTCATTAAATTACTTTCAA
46703337 A
1 A
46703338 GTTAAGGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTTCATTAAATTACTTTCAA
Found at i:46719326 original size:156 final size:157
Alignment explanation
Indices: 46719040--46719361 Score: 574
Period size: 156 Copynumber: 2.1 Consensus size: 157
46719030 TCTAAGTCTT
* *
46719040 AGAAATTAGAAATCATGCATGTTGGTAAGTTTTGCAATTTCTCTGCATTAGTAAATTCAAAAAAA
1 AGAAATTAGAAATCATGCATGTTGGTAAGTTTTGCAATTTCTCTACATTAGCAAATTC-AAAAAA
46719105 AAAGAAGGTAGTTAAGGATTTCAGTTAATTATTGGTCCTGTTTTGTTTTAAGGTAAAGTGGTAGA
65 AAAGAAGGTAGTTAAGGATTTCAGTTAATTATTGGTCCTGTTTTGTTTTAAGGTAAAGTGGTAGA
46719170 TAATCATTCAAATGGTCTTTGCATGCAA
130 TAATCATTCAAATGGTCTTTGCATGCAA
* * *
46719198 AGAAATTAGAAATCATGCATGTTGGTAAGTTTTGTAATTTTTCTACATTAGCAAATTC-AAGAAA
1 AGAAATTAGAAATCATGCATGTTGGTAAGTTTTGCAATTTCTCTACATTAGCAAATTCAAAAAAA
46719262 AAGAAGGTAGTTAAGGATTTCAGTTAATTATTGGTCCTGTTTTGTTTTAAGGTAAAGTGGTAGAT
66 AAGAAGGTAGTTAAGGATTTCAGTTAATTATTGGTCCTGTTTTGTTTTAAGGTAAAGTGGTAGAT
*
46719327 AATTATTCAAATGGTCTTTGCATGCAA
131 AATCATTCAAATGGTCTTTGCATGCAA
46719354 AGAAATTA
1 AGAAATTA
46719362 TGGTTTTTAT
Statistics
Matches: 158, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
156 104 0.66
158 54 0.34
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (157 bp):
AGAAATTAGAAATCATGCATGTTGGTAAGTTTTGCAATTTCTCTACATTAGCAAATTCAAAAAAA
AAGAAGGTAGTTAAGGATTTCAGTTAATTATTGGTCCTGTTTTGTTTTAAGGTAAAGTGGTAGAT
AATCATTCAAATGGTCTTTGCATGCAA
Found at i:46720178 original size:55 final size:53
Alignment explanation
Indices: 46720117--46720307 Score: 168
Period size: 55 Copynumber: 3.5 Consensus size: 53
46720107 TGTAACTGTG
* * * *
46720117 GAAGTCCGTCAAGACAATCTTAA-ATGTGGGAAGTCCACCAGGATTATCTTATGT
1 GAAGTCCGT-AAGACTATC-TAATATGTGGGAAGTCCACCAAGACTATCTTATAT
* **
46720171 CGAAGTCCGTAAGGACTATCTAATATGTAGGAAGTCTGCCAAGACTATCTTATAT
1 -GAAGTCCGTAA-GACTATCTAATATGTGGGAAGTCCACCAAGACTATCTTATAT
* ** * * *
46720226 GAAATCCTGTAAAGACTATCTAATATGTGGGAAGTCTGCCAATACTATCGTATGT
1 GAAGTCC-GT-AAGACTATCTAATATGTGGGAAGTCCACCAAGACTATCTTATAT
* *
46720281 GGAAATTCGTAAGGACTATCTAATATG
1 -GAAGTCCGTAA-GACTATCTAATATG
46720308 GCGAAGTTCG
Statistics
Matches: 117, Mismatches: 13, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
54 13 0.11
55 96 0.82
56 8 0.07
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (53 bp):
GAAGTCCGTAAGACTATCTAATATGTGGGAAGTCCACCAAGACTATCTTATAT
Found at i:46720216 original size:29 final size:29
Alignment explanation
Indices: 46720184--46720274 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 29
46720174 AGTCCGTAAG
46720184 GACTATCTAATATGTAGGAAGTCTGCCAA
1 GACTATCTAATATGTAGGAAGTCTGCCAA
* **
46720213 GACTATCTTATATG-A--AA-TCCTGTAAA
1 GACTATCTAATATGTAGGAAGT-CTGCCAA
*
46720239 GACTATCTAATATGTGGGAAGTCTGCCAA
1 GACTATCTAATATGTAGGAAGTCTGCCAA
*
46720268 TACTATC
1 GACTATC
46720275 GTATGTGGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
25 1 0.02
26 20 0.41
28 1 0.02
29 26 0.53
30 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (29 bp):
GACTATCTAATATGTAGGAAGTCTGCCAA
Found at i:46723290 original size:26 final size:26
Alignment explanation
Indices: 46723263--46723313 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
46723253 GTTGTAAATA
46723263 AAAAAAATATCTCTAG-AAATTTTCT
1 AAAAAAATATCTCTAGAAAATTTTCT
* * *
46723288 AAAATAATTTCTTTAGAAAATTTTCT
1 AAAAAAATATCTCTAGAAAATTTTCT
46723314 CTCTACACCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (26 bp):
AAAAAAATATCTCTAGAAAATTTTCT
Found at i:46723463 original size:17 final size:17
Alignment explanation
Indices: 46723419--46723476 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
46723409 TAATCACTTT
*
46723419 AATATTAAATT-AATAA
1 AATATTAAATTAAATTA
*
46723435 AATACT--ATTAAATTA
1 AATATTAAATTAAATTA
*
46723450 AGTATTAAATTAAATTA
1 AATATTAAATTAAATTA
46723467 AATATTAAAT
1 AATATTAAAT
46723477 CTATTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
14 3 0.09
15 8 0.24
16 5 0.15
17 18 0.53
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:46729474 original size:23 final size:21
Alignment explanation
Indices: 46729443--46729488 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
46729433 AATTTTAAAA
*
46729443 ATTTAGAAAAGTATATAAAAATT
1 ATTTAGAAAA-AAT-TAAAAATT
*
46729466 ATTTTGAAAAAATTAAAAATT
1 ATTTAGAAAAAATTAAAAATT
46729487 AT
1 AT
46729489 ATAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 2 0.10
23 9 0.43
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (21 bp):
ATTTAGAAAAAATTAAAAATT
Found at i:46729490 original size:32 final size:32
Alignment explanation
Indices: 46729434--46729494 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
46729424 ACTTTTTAAA
*
46729434 ATTTTAAAAATTTAGAAAAGTATATAAAAATT
1 ATTTTAAAAAATTAGAAAAGTATATAAAAATT
*
46729466 ATTTTGAAAAAATTA-AAAATTATATAAAA
1 ATTTT-AAAAAATTAGAAAAGTATATAAAA
46729495 TATAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 18 0.69
33 8 0.31
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (32 bp):
ATTTTAAAAAATTAGAAAAGTATATAAAAATT
Found at i:46734580 original size:5 final size:5
Alignment explanation
Indices: 46734570--46734594 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
46734560 ACGAAGAAGG
46734570 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
46734595 TCTAAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:46735472 original size:44 final size:44
Alignment explanation
Indices: 46735375--46736097 Score: 364
Period size: 44 Copynumber: 16.7 Consensus size: 44
46735365 TCTGATGCGA
* * * **
46735375 TCTGCTCTACTGCAACTTCAGAGAGATGAGATTCATCG-TTT-TG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGT-GTTTTCTG
* * *
46735418 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTCTG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTTTTCTG
* * * * *
46735463 TCTGTTCCACTGTAACTTTAGAGAGATAAGACTGGATG----C-G
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TGTTTTCTG
* * * **
46735503 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATAT-GTGGTTTT-AA
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGT-GTTTTCTG
* * *
46735548 TCTACTCCACTGCAATTTTAGGGAGATAAGATTGGT-TTCTTCTG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTT-TTCTG
* * * * **
46735592 TCTTCTCCACTGTAACTTCAGAGAGATAAGACTGGATGTAATCTG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TGTTTTCTG
* * * * **
46735637 -CT-AT--ACCGCAACTTCAGAGAGATAATATCT-GTGGTTTT-AA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGT-GTTTTCTG
* * *
46735677 TCTGCTCCACTGTAACTTCAGGCAGATAGGATTGGT-TTCTTCTG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTT-TTCTG
* * *
46735721 TCTGCTCCACTGCAACTTTAGGGGGATAAGACTGGATG----C-G
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGG-TGTTTTCTG
* * * * *
46735761 ATCTGCTCTACTGCAACTTCAGAGAGGTAAGGTCT-GTGGTTT-TG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGTGTTTTCTG
* * * *
46735805 ATCCGTTCCACTGCAACTTCAGGGAGATAGGATTGAT-TTCTTCTG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTT-TTCTG
* * *
46735850 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CGG-G-ATGC-G
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTTTTCTG
* ** * **
46735890 ATCTGCTCTACTGCAACTTCAAAGAGGTAAGATCT-GTGGTTTT-AA
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGT-GTTTTCTG
* * * *
46735935 TCTGCTCCACTGTAACTTCAAGGAGATAGGATTGGT-TTCTTCTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTT-TTCTG
* * * **
46735979 TCTGCTCCACTGCAACTTTAGAGAAATAAGATCT-GTGGTTTT-AA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGT-GTTTTCTG
** *
46736023 TCCACTCCACTGCAACTTCAGGGAGATAGGATTGGT-TTCTTCTG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTT-TTCTG
*
46736067 TCTGCTCCACTGTAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
46736098 CTGGATGTGA
Statistics
Matches: 508, Mismatches: 117, Indels: 108
0.69 0.16 0.15
Matches are distributed among these distances:
40 7 0.01
41 113 0.22
42 13 0.03
43 16 0.03
44 341 0.67
45 15 0.03
46 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTGTTTTCTG
Found at i:46735530 original size:129 final size:130
Alignment explanation
Indices: 46735358--46736009 Score: 884
Period size: 129 Copynumber: 5.1 Consensus size: 130
46735348 TGTAACTTAA
* * * * *
46735358 AGATAAGTCT-GATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATTC-ATCGTTTTGATC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCTGTGGTTTTAATC
* * * *
46735421 CGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTCTGTCTGTTCCACTGTAACTTTAGAG
66 TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* *
46735486 AGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGA-TATGTGGTTTTAATC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCTGTGGTTTTAATC
* * * * * * *
46735550 TACTCCACTGCAATTTTAGGGAGATAAGATTGGTTTCTTCTGTCTTCTCCACTGTAACTTCAGAG
66 TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
** * * *
46735615 AGATAAGACTGGATGTAATCTGCTATACCGCAACTTCAGAGAGATAATA-TCTGTGGTTTTAATC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCTGTGGTTTTAATC
* * *
46735679 TGCTCCACTGTAACTTCAGGCAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGG
66 TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* * * *
46735744 GGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGGTAAG-GTCTGTGGTTTTGATC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCTGTGGTTTTAATC
* * * * *
46735808 CGTTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
66 TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* * *
46735873 AGATAAGACGGGATGCGATCTGCTCTACTGCAACTTCAAAGAGGTAAGA-TCTGTGGTTTTAATC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCTGTGGTTTTAATC
* * *
46735937 TGCTCCACTGTAACTTCAAGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAACTTTAGAG
66 TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
*
46736002 AAATAAGA
1 AGATAAGA
46736010 TCTGTGGTTT
Statistics
Matches: 460, Mismatches: 60, Indels: 7
0.87 0.11 0.01
Matches are distributed among these distances:
128 10 0.02
129 450 0.98
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (130 bp):
AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCTGTGGTTTTAATC
TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
Found at i:46735558 original size:85 final size:85
Alignment explanation
Indices: 46735463--46735833 Score: 270
Period size: 85 Copynumber: 4.3 Consensus size: 85
46735453 GTTTTTTCTG
* *
46735463 TCTGTTCCACTGTAACTTTAGAGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGA
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGA
46735528 GATAAGATATGTGGTTTTAA
66 GATAAGATATGTGGTTTTAA
* * * * * * *
46735548 TCTACTCCACTGCAATTTTAGGGAGATAAGATTGGTTTC-TTCTGTCTTCTCCACTGTAACTTCA
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTGGATGCGATCTG-C-TCT--ACTGTAACTTCA
* * *
46735612 GAGAGATAAG--A-CTGGATGTAA
62 GAGAGATAAGATATGTGGTTTTAA
** * * * * *** *
46735633 TCTGCTATACCGCAACTTCAGAGAGATAATATCTGTGGTTTTAATCTGCTCCACTGTAACTTCAG
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGA-C--TGGATGCGATCTGCTCTACTGTAACTTCAG
* * **
46735698 -GCAGATAGGAT-TG-GTTTCTTCTG
63 AG-AGATAAGATATGTGGTT-TT-AA
* * *
46735721 TCTGCTCCACTGCAACTTTAGGGGGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGA
* * * *
46735786 GGTAAGGTCTGTGGTTTTGA
66 GATAAGATATGTGGTTTTAA
* * * *
46735806 TCCGTTCCACTGCAACTTCAGGGAGATA
1 TCTGCTCCACTGCAACTTTAGAGAGATA
46735834 GGATTGATTT
Statistics
Matches: 215, Mismatches: 54, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
84 5 0.02
85 135 0.63
86 11 0.05
87 7 0.03
88 53 0.25
89 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (85 bp):
TCTGCTCCACTGCAACTTTAGAGAGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGA
GATAAGATATGTGGTTTTAA
Found at i:46736059 original size:129 final size:127
Alignment explanation
Indices: 46735358--46736094 Score: 814
Period size: 129 Copynumber: 5.7 Consensus size: 127
46735348 TGTAACTTAA
* * * *
46735358 AGATAAGTCT-GATGCGATCTGCTCTACTGCAACTTCAGAGAGAT-GAGATTCATCGTTTTGATC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAG-GA-T-GTGGTTTTAATC
* * * *
46735421 CGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTCTGTCTGTTCCACTGTAACTTTAGAG
63 TGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* *
46735486 AGATAAGACTGGATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATATGTGGTTTTAATCT
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT-AG-GATGTGGTTTTAATCT
* * * * * * *
46735551 ACTCCACTGCAATTTTAGGGAGATAAGATTGGTTTCTTCTGTCTTCTCCACTGTAACTTCAGAG
64 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
** * * **
46735615 AGATAAGACTGGATGTAATCTGCTATACCGCAACTTCAGAGAGATAATATCTGTGGTTTTAATCT
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGA--TGTGGTTTTAATCT
* * *
46735680 GCTCCACTGTAACTTCAGGCAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGG
64 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* * * * *
46735744 GGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGGTAAGGTCTGTGGTTTTGATCC
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT-AGG-ATGTGGTTTTAATCT
* * * *
46735809 GTTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGGG
64 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* * * *
46735873 AGATAAGACGGGATGCGATCTGCTCTACTGCAACTTCAAAGAGGTAAGATCTGTGGTTTTAATCT
1 AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGA--TGTGGTTTTAATCT
* * *
46735938 GCTCCACTGTAACTTCAAGGAGATAGGATTGGTTTCTTCTATCTGCTCCACTGCAACTTTAGAG
64 GCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
* * *** ** * * *
46736002 AAATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTCT
1 AGATAAGA-C--TGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGATGTGG-TT-TT-A
* *
46736066 GTCTGCTCCACTGTAACTTCAGGGAGATA
60 ATCTGCTCCACTGCAACTTCAGGGAGATA
46736095 AGACTGGATG
Statistics
Matches: 517, Mismatches: 77, Indels: 26
0.83 0.12 0.04
Matches are distributed among these distances:
127 2 0.00
128 12 0.02
129 437 0.85
130 6 0.01
131 5 0.01
132 55 0.11
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (127 bp):
AGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAGGATGTGGTTTTAATCTGC
TCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGAG
Found at i:46736351 original size:44 final size:44
Alignment explanation
Indices: 46736303--46736459 Score: 194
Period size: 44 Copynumber: 3.6 Consensus size: 44
46736293 TTTGATCTGC
* *
46736303 TCCACTACTG-CTTAGGGTGACAGGA-TCTACAA-CTTTCAACCTAT
1 TCCACTACTGTC-TAGGGAGATAGGACT-TACAATC-TTCAACCTAT
* * *
46736347 TCCACTGCTGTCCAGGGAGATATGACTTACAATCTTCAACCTAT
1 TCCACTACTGTCTAGGGAGATAGGACTTACAATCTTCAACCTAT
*
46736391 TCCACTACTATCTAGGGAGATAGGACTTACAATCTTCAACCTAT
1 TCCACTACTGTCTAGGGAGATAGGACTTACAATCTTCAACCTAT
* *
46736435 TCCACTGCTGTCCAGGGAGATAGGA
1 TCCACTACTGTCTAGGGAGATAGGA
46736460 TTTATGGTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
44 95 0.97
45 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
TCCACTACTGTCTAGGGAGATAGGACTTACAATCTTCAACCTAT
Found at i:46744055 original size:20 final size:22
Alignment explanation
Indices: 46744025--46744068 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
46744015 TTTGGTGTTT
46744025 AGGGCTTAGGTG-ATTTGGGCC
1 AGGGCTTAGGTGAATTTGGGCC
46744046 AGGG-TTAGGTGATATTTGGGCC
1 AGGGCTTAGGTGA-ATTTGGGCC
46744068 A
1 A
46744069 AATTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 4 0.19
22 10 0.48
ACGTcount: A:0.18, C:0.11, G:0.41, T:0.30
Consensus pattern (22 bp):
AGGGCTTAGGTGAATTTGGGCC
Found at i:46758952 original size:20 final size:21
Alignment explanation
Indices: 46758917--46758955 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
46758907 TTTATGGTTT
*
46758917 TAAATAATTTTTGGGTAAAAA
1 TAAATAATTTTGGGGTAAAAA
46758938 TAAAT-ATTTTGGGGTAAA
1 TAAATAATTTTGGGGTAAA
46758956 TTGAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (21 bp):
TAAATAATTTTGGGGTAAAAA
Found at i:46762983 original size:49 final size:49
Alignment explanation
Indices: 46762805--46762996 Score: 131
Period size: 49 Copynumber: 3.9 Consensus size: 49
46762795 TTGGTGTCCA
* * * * *
46762805 GAATGATGGATCACTGGTAGGGTATGTTAGTTGCTAACCAGAATGGCA-
1 GAATGATGGATCACTAGTAAGGCATCTTAGTTGCTAACCAGATTGGCAG
* * * * *
46762853 G-ATGTACTGGATGACTGGTAAGGCCTGC-TAGTTGCTAACCAG-GTGGGAG
1 GAATG-A-TGGATCACTAGTAAGGCAT-CTTAGTTGCTAACCAGATTGGCAG
* ** * *
46762902 GATAAGATGGGCCAGTAGTAAGGCATGTTAGTTGCTAACCAGATTGGCAG
1 GA-ATGATGGATCACTAGTAAGGCATCTTAGTTGCTAACCAGATTGGCAG
* * * * * *
46762952 GAATGATGGGTCACTAGTAGGGTATCATAGTTACTAACTAGATTG
1 GAATGATGGATCACTAGTAAGGCATCTTAGTTGCTAACCAGATTG
46762997 ACGTGAGTGC
Statistics
Matches: 110, Mismatches: 26, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
47 3 0.03
48 6 0.05
49 91 0.83
50 8 0.07
51 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.27
Consensus pattern (49 bp):
GAATGATGGATCACTAGTAAGGCATCTTAGTTGCTAACCAGATTGGCAG
Found at i:46764168 original size:14 final size:15
Alignment explanation
Indices: 46764146--46764174 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46764136 TTCTTATTGG
46764146 TTATCTTTTATTTTT
1 TTATCTTTTATTTTT
46764161 TTAT-TTTTATTTTT
1 TTATCTTTTATTTTT
46764175 GCATACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTATCTTTTATTTTT
Found at i:46764994 original size:26 final size:26
Alignment explanation
Indices: 46764965--46765018 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
46764955 TATTAGATTG
* * *
46764965 TTTTATATTATTTTAGATATTATGTA
1 TTTTAAATCATTTCAGATATTATGTA
* *
46764991 TTTTAAATCATTTCATATATTATTTA
1 TTTTAAATCATTTCAGATATTATGTA
46765017 TT
1 TT
46765019 ATGAATGGCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
TTTTAAATCATTTCAGATATTATGTA
Found at i:46771325 original size:44 final size:44
Alignment explanation
Indices: 46771267--46771620 Score: 161
Period size: 44 Copynumber: 7.5 Consensus size: 44
46771257 TATCTTCTTG
*
46771267 AAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTA
* * * ** * *
46771311 AAGTTGCAGCGGAGCAGATTGAAGACAACGAATCTTATTTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAG-CCACCAGCCTTATCTCCCTA
** ** * ** *
46771356 GCGTTGCAGTGGAATAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA--GC----CTTATCTCCCTA
* *
46771410 AAGTTGCAGTCGAGCAAATTGAAGCCACCAGCCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTA
* * * * * * * * *
46771454 AAGTTACAGCGGAGCAGACTGAAGACAGCAGATCTTATTTCCTTGG
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAG-CCTTATCTCCCT-A
* * * ** *
46771500 CA-TTGCAGTGGAACAGATTAAAGCTACAAATTATGGCTGATCTTATCTTCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA--GC----CTTATCTCCCTA
* *
46771553 AAGTTGCAGTAGAGGAGATTGAAGCCACCAGCCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTA
* *
46771597 AAGTTGCAGTAGAGCAGACTGAAG
1 AAGTTGCAGTGGAGCAGATTGAAG
46771621 ACAGCGAATC
Statistics
Matches: 219, Mismatches: 67, Indels: 48
0.66 0.20 0.14
Matches are distributed among these distances:
44 91 0.42
45 57 0.26
46 1 0.00
47 1 0.00
48 6 0.03
49 2 0.01
50 4 0.02
51 1 0.00
52 2 0.01
53 1 0.00
54 53 0.24
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTA
Found at i:46771506 original size:143 final size:143
Alignment explanation
Indices: 46771241--46772579 Score: 1802
Period size: 143 Copynumber: 9.4 Consensus size: 143
46771231 GATGGATTGA
* *
46771241 AAATTATGGCAGATCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * * * *
46771306 CCCTAAAGTTGCAGCGGAGCAGATTGAAGACAACGAATCTTATTTCCCTGGCGTTGCAGTGGAAT
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
46771371 AGATTAAAGCTAC
131 AGATTAAAGCTAC
* * * *
46771384 AAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTCGAGCAAATTGAAGCCACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * * * *
46771449 CCCTAAAGTTACAGCGGAGCAGACTGAAGACAGC-AGATCTTATTTCCTTGGCATTGCAGTGGAA
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA-ATCTTATTTCCCTGGCGTTGCAGTGGAA
46771513 CAGATTAAAGCTAC
130 CAGATTAAAGCTAC
* * * *
46771527 AAATTATGGCTGATCTTATCTTCCTAAAGTTGCAGTAGAGGAGATTGAAGCCACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* ** * * * *
46771592 CCCTAAAGTTGCAGTAGAGCAGACTGAAGACAGCGAATCTTATTTCTCTGGCGTTGTAGTGGAAT
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
46771657 AGATTAAAGCTAC
131 AGATTAAAGCTAC
* * * *
46771670 AAATTATGACGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCTACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * * * *
46771735 CCTTGAAGTTGCAGCGGAGCAGACTAAAGACAACAAATCTTATTTCCTTGGCATTGCAGTGGAAC
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
46771800 AGATTAAAGCTAC
131 AGATTAAAGCTAC
* *
46771813 AAATTATGGCGGATATTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * * * *
46771878 CCCTGAAGTTGTAGCAGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGTACTGGAAT
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
46771943 AGATTAAAGCTAC
131 AGATTAAAGCTAC
46771956 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * ** * * *
46772021 CCTTGACGTTATAGCGGAGCTGACTAAAGACAGTGAATCTTATTTCCCTGGCGTTGTAGTGGAAC
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
*
46772086 AGATTAAAGTTAC
131 AGATTAAAGCTAC
* * * *
46772099 AAACTATGGTAGATCTTATCTTCCTGCAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * * *
46772164 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGAAAT
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
*
46772229 AGATTAAAACTAC
131 AGATTAAAGCTAC
* * * * * * *
46772242 AAATTATGGAAAATCTTATCTTCCTAAAGTTGCAATGGAGCATATTGAAGCCACCAGCCTAATTT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * * * * * *
46772307 CCCTAAAGTTGCAGCAGAGCAGACAAAAGACAGCAAATCTTATTTCCCTAGCATTACAGTGGAAC
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
*
46772372 AGATTAAGGCTAC
131 AGATTAAAGCTAC
* *
46772385 AAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGCCTTATCT
1 AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
* * ** * ** * *
46772450 CCCTGAACTTGTAGATGAGCAGACTGAAGACAATGAATCTTATTTCTCTGGCGCTGCAGTGGAAC
66 CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
46772515 AGATTAAAGCTAC
131 AGATTAAAGCTAC
* * * * *
46772528 CAATTATGGCCA-ATTTTTATC-TCCTTGAAGTTACAGTGGAGTAGATCGAAGC
1 AAATTATGG-CAGA-TCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAGC
46772580 TACAAATCTC
Statistics
Matches: 1054, Mismatches: 137, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
142 1 0.00
143 1021 0.97
144 32 0.03
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (143 bp):
AAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT
CCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAAC
AGATTAAAGCTAC
Found at i:46772612 original size:44 final size:44
Alignment explanation
Indices: 46772544--46772658 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 44
46772534 TGGCCAATTT
* * * * *
46772544 TTATCTCCTTGAAGTTACAGTGGAGTAGATCGAAGCTACAAAT-C
1 TTATCTCCCTAAAATTACAGTGGAGCAGATCGAAGCCAC-AATCC
*
46772588 TCT-TCTCCCTAAAATTACATTGGAGCAGATCGAAGCCACAATCC
1 T-TATCTCCCTAAAATTACAGTGGAGCAGATCGAAGCCACAATCC
*
46772632 TTATCTCCCTAAAGTTACAGTGGAGCA
1 TTATCTCCCTAAAATTACAGTGGAGCA
46772659 TGATAAAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 4 0.07
44 55 0.92
45 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (44 bp):
TTATCTCCCTAAAATTACAGTGGAGCAGATCGAAGCCACAATCC
Found at i:46773440 original size:30 final size:31
Alignment explanation
Indices: 46773416--46773474 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
46773406 GTAAATACTC
* **
46773416 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACCAATAGTGTAAATATGA
46773446 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAATAGTGTAAATAT
46773475 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACCAATAGTGTAAATATGA
Found at i:46776509 original size:13 final size:14
Alignment explanation
Indices: 46776493--46776522 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
46776483 ATAATGTTAT
46776493 ATTTTAA-TAATTC
1 ATTTTAAGTAATTC
46776506 ATTTTAAGTAATTC
1 ATTTTAAGTAATTC
46776520 ATT
1 ATT
46776523 AATAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (14 bp):
ATTTTAAGTAATTC
Found at i:46778446 original size:24 final size:23
Alignment explanation
Indices: 46778386--46778448 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
46778376 TTTTTAGCAG
* *
46778386 TTTTATATTTTTATTTATTTTAAA
1 TTTTATA-TATTATTTATATTAAA
*
46778410 TTTTATATATTATTTATATTAGA
1 TTTTATATATTATTTATATTAAA
*
46778433 TTGTTTTATATTATTT
1 TT-TTATATATTATTT
46778449 TAGATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 15 0.44
24 19 0.56
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (23 bp):
TTTTATATATTATTTATATTAAA
Found at i:46784764 original size:26 final size:26
Alignment explanation
Indices: 46784690--46784765 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
46784680 CCTAAAATTT
*
46784690 TATACTAATAATTTTATACATTTTTTAA
1 TATA-TAATAATTTTATACA-ATTTTAA
* * **
46784718 TATAT-CT-ATATTATATTATTTTAA
1 TATATAATAATTTTATACAATTTTAA
*
46784742 TATTTAATAATTTTATACAATTTT
1 TATATAATAATTTTATACAATTTT
46784766 TATTGAATTT
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
24 10 0.28
25 8 0.22
26 13 0.36
27 1 0.03
28 4 0.11
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (26 bp):
TATATAATAATTTTATACAATTTTAA
Found at i:46786882 original size:17 final size:17
Alignment explanation
Indices: 46786860--46786896 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
46786850 TACTACAATA
46786860 ATAATAATAAT-ATAATC
1 ATAATAATAATCAT-ATC
46786877 ATAATAATAATCATATC
1 ATAATAATAATCATATC
46786894 ATA
1 ATA
46786897 GGAATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATAATAATCATATC
Found at i:46787001 original size:19 final size:20
Alignment explanation
Indices: 46786979--46787023 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
46786969 AATAGTAAAA
46786979 AATAAAAAATAACAATG-G-C
1 AATAAAAAATAA-AATGTGCC
*
46786998 AAT-AATAATAAAATGTGCC
1 AATAAAAAATAAAATGTGCC
46787017 AATAAAA
1 AATAAAA
46787024 GCATGTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
17 4 0.19
18 8 0.38
19 7 0.33
20 2 0.10
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.20
Consensus pattern (20 bp):
AATAAAAAATAAAATGTGCC
Found at i:46787083 original size:3 final size:3
Alignment explanation
Indices: 46787077--46787110 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
46787067 ATGATAATCA
*
46787077 AAT AAT AAT AAT AAT AAT AAT -AT AAT AGT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
46787111 AGGCAAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46788707 original size:44 final size:44
Alignment explanation
Indices: 46788626--46789054 Score: 299
Period size: 44 Copynumber: 9.5 Consensus size: 44
46788616 TCGTTCTAAC
* * * * * *
46788626 CCACTGCGACTTCAGGGATATAGGAATTGTTGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGTTTCAATCTGCT
* * *
46788670 CCACTGCAACTTTAGGGAGATAAAATTAGTAGTTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGTTTCAATCTGCT
** * *
46788714 CCACTGCAACTTCAAAGAGATAAGATTTATAACTCGTAGCTTT-AATTTGTT
1 CCACTGCAACTTCAGGGAGATAAGA--T-T---T-GTAG-TTTCAATCTGCT
* * * * *
46788765 CCATTACAACTTCAGGGAAATAAGATTCTCTA-TCTTCCATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATT-TGTAGT-TTCAATCTGCT
* * * * *
46788810 CCACTGCAACTTCAGGAAGATAAGATATGTGGCTTCAATGTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGTTTCAATCTGCT
* * * **
46788854 CTACTACAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGTTTCAATCTGCT
* * * * **
46788898 CTACTGTAACTTCAGAGAGATAAGATTTGTAGCTTCAATCTATT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAGTTTCAATCTGCT
** ** * *
46788942 TTACTGCAACTTCAAAGAGATAAAATTTGTTA-TCTTCAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGT-TTCAATCTGCT
* * * *
46788987 CTACTGTAACTTTAGGGAGATAATATTTGTAGCTTT-AATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGTAG-TTTCAATCTGCT
* *
46789031 CCTCTGCAACTTCAGGGAGTTAAG
1 CCACTGCAACTTCAGGGAGATAAG
46789055 GTTCGCCACG
Statistics
Matches: 303, Mismatches: 67, Indels: 30
0.76 0.17 0.08
Matches are distributed among these distances:
43 1 0.00
44 196 0.65
45 66 0.22
46 4 0.01
47 1 0.00
48 1 0.00
49 1 0.00
51 30 0.10
52 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTAGTTTCAATCTGCT
Found at i:46789891 original size:27 final size:27
Alignment explanation
Indices: 46789829--46789892 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
46789819 AAAAAATATT
*
46789829 ATAAAAATTATTAAATTTTAATAAAAA
1 ATAAAAATTATTAAAATTTAATAAAAA
* *
46789856 ATAAAAAATATTTAAAATTTATTAAAAA
1 ATAAAAATTA-TTAAAATTTAATAAAAA
46789884 ATAAAAATT
1 ATAAAAATT
46789893 TGTATAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (27 bp):
ATAAAAATTATTAAAATTTAATAAAAA
Found at i:46792008 original size:24 final size:23
Alignment explanation
Indices: 46791980--46792032 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
46791970 GTACACATAT
46791980 ATATTTTTTTAAACGAATATTTTC
1 ATATTTTTTT-AACGAATATTTTC
* *
46792004 CTATTTTTTTAATGAATATTTTC
1 ATATTTTTTTAACGAATATTTTC
46792027 ATATTT
1 ATATTT
46792033 ATATGTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (23 bp):
ATATTTTTTTAACGAATATTTTC
Found at i:46796084 original size:30 final size:30
Alignment explanation
Indices: 46796050--46796111 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
46796040 TTTTTTAAGC
46796050 TAATATTCTTTCATTCTTTTCGAATAATTA
1 TAATATTCTTTCATTCTTTTCGAATAATTA
46796080 TAATATTCTTTCATTCTTTTCGAATAATTA
1 TAATATTCTTTCATTCTTTTCGAATAATTA
46796110 TA
1 TA
46796112 CTTTCATTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.53
Consensus pattern (30 bp):
TAATATTCTTTCATTCTTTTCGAATAATTA
Found at i:46796833 original size:7 final size:7
Alignment explanation
Indices: 46796821--46796861 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
46796811 TTCAGATTAA
46796821 AAAAAAC
1 AAAAAAC
46796828 AAAAAAC
1 AAAAAAC
46796835 AAAAAA-
1 AAAAAAC
*
46796841 AAACAAAA
1 AAA-AAAC
46796849 AAAAAAC
1 AAAAAAC
46796856 AAAAAA
1 AAAAAA
46796862 TGAAAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 3 0.10
7 25 0.81
8 3 0.10
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:46796841 original size:10 final size:10
Alignment explanation
Indices: 46796819--46796861 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
46796809 AGTTCAGATT
*
46796819 AAAAAA-AAC
1 AAAAAACAAA
46796828 AAAAAACAAA
1 AAAAAACAAA
46796838 AAAAAACAAAA
1 AAAAAAC-AAA
46796849 AAAAAACAAA
1 AAAAAACAAA
46796859 AAA
1 AAA
46796862 TGAAAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
9 6 0.19
10 15 0.48
11 10 0.32
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAACAAA
Found at i:46796842 original size:11 final size:11
Alignment explanation
Indices: 46796819--46796861 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
46796809 AGTTCAGATT
*
46796819 AAAAA-AAACA
1 AAAAACAAAAA
46796829 AAAAAC-AAAA
1 AAAAACAAAAA
46796839 AAAAACAAAAA
1 AAAAACAAAAA
46796850 AAAAACAAAAA
1 AAAAACAAAAA
46796861 A
1 A
46796862 TGAAAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 14 0.47
11 16 0.53
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAACAAAAA
Found at i:46796868 original size:17 final size:17
Alignment explanation
Indices: 46796819--46796861 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
46796809 AGTTCAGATT
*
46796819 AAAAAAAACAAAAAACA
1 AAAAAAAACAAAAAAAA
46796836 AAAAAAAACAAAAAAAA
1 AAAAAAAACAAAAAAAA
46796853 AACAAAAAA
1 AA-AAAAAA
46796862 TGAAAAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAACAAAAAAAA
Found at i:46796877 original size:10 final size:9
Alignment explanation
Indices: 46796818--46796883 Score: 50
Period size: 9 Copynumber: 7.6 Consensus size: 9
46796808 GAGTTCAGAT
46796818 TAAAAAAAA
1 TAAAAAAAA
* *
46796827 CAAAAAACA
1 TAAAAAAAA
46796836 -AAAAAAAA
1 TAAAAAAAA
*
46796844 CAAAAAAAA
1 TAAAAAAAA
46796853 -AACAAAAAA
1 TAA-AAAAAA
*
46796862 T--GAAAAA
1 TAAAAAAAA
46796869 TGAAAAAAAA
1 T-AAAAAAAA
46796879 TAAAA
1 TAAAA
46796884 GGAAAAATGG
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
7 6 0.13
8 9 0.20
9 25 0.54
10 6 0.13
ACGTcount: A:0.85, C:0.06, G:0.03, T:0.06
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:46796878 original size:1 final size:1
Alignment explanation
Indices: 46796819--46796861 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
46796809 AGTTCAGATT
* * * *
46796819 AAAAAAAACAAAAAACAAAAAAAAACAAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
46796862 TGAAAAATGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:46798586 original size:41 final size:42
Alignment explanation
Indices: 46798479--46798586 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 42
46798469 AAGATGGCAA
*
46798479 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCAATG
1 ATCTTATCTCTCTGAAGTTGCAGTGGAACAGATTAAAGCC-A-G
* * *
46798523 ATCCTATCTCTCTGAAGCTGCAGTGGAGC-GAATTAAAGCC-G
1 ATCTTATCTCTCTGAAGTTGCAGTGGAACAG-ATTAAAGCCAG
46798564 ATCTTATCTCTCTGAAGTTGCAG
1 ATCTTATCTCTCTGAAGTTGCAG
46798587 AGAGCAGATC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 22 0.39
43 1 0.02
44 34 0.60
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
ATCTTATCTCTCTGAAGTTGCAGTGGAACAGATTAAAGCCAG
Found at i:46798944 original size:132 final size:132
Alignment explanation
Indices: 46798777--46799318 Score: 820
Period size: 132 Copynumber: 4.1 Consensus size: 132
46798767 GGTTAAAACC
*
46798777 GATCTTATCTCCCTAAGCAGTAGTAGG-GCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTT
1 GATCTTATCTCCCTAAGCAGTAGT-GGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTT
* * * *
46798841 ATAGTGGAGTACATTAAAGCCAGTAATTCTATTTCCCTGGACAACAGTGGAATAGATTGAAGATT
65 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATT
46798906 TCA
130 TCA
* *
46798909 GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTA
1 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA
*
46798974 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTT
46799039 CA
131 CA
*
46799041 GATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA
1 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA
* *
46799106 CAATGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAATATTT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTT
46799171 CA
131 CA
* * * * *
46799173 GATCTTATATCCCTAAGCAGTAGTGGAACAGATCAAAGATGGCGGATTTTACCTCCTTGTGGTTA
1 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA
* * * * * *
46799238 CAGTGGAGTACATTGAAGCTAGTAATCCTA-TCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATT
66 CAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAACAGTGGAATAGATTGAAGATT
*
46799302 GTAA
130 -TCA
*
46799306 G-TTTTATCTCCCT
1 GATCTTATCTCCCT
46799319 GCAGTTGCAG
Statistics
Matches: 376, Mismatches: 31, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
131 3 0.01
132 370 0.98
133 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (132 bp):
GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA
CAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTT
CA
Found at i:46799165 original size:43 final size:44
Alignment explanation
Indices: 46798843--46799165 Score: 119
Period size: 44 Copynumber: 7.4 Consensus size: 44
46798833 CTGTGGTTAT
* * * *
46798843 AGTGGAGTACATTAAAGCCAGTA-ATTCTATTTCCCTGGACAAC
1 AGTGGAGTAGATTGAAGCCAGTAGATTCTACTTCCCTGGGCAAC
* * ** **
46798886 AGTGGAATAGATTGAAG--ATTTCAGA-TCTTA-TCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGCCA-GT-AGATTC-TACT-TCCCTGGGCAAC
* *** * * * * **
46798930 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTAC
1 AGTGGAGTAGATTGAAGCCAGTAGATTCTACTTCCCTG-GGCAAC
* *
46798975 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAGC
1 AGTGGAGTAGATTGAAGCCAGTAGATTCTACTTCCCTGGGCAAC
* * ** *
46799018 AGTGGAATAGATTGAAG--ATTTCAGA-TCTTA-TCTCCCTAAGCAAT
1 AGTGGAGTAGATTGAAGCCA-GT-AGATTC-TACT-TCCCTGGGCAAC
* * *** * * * **
46799062 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTAC
1 AGTGGAGTAGATTGAAGCCAGTAGATTCTACTTCCCTG-GGCAAC
* *
46799107 AATGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGCCAGTAGATTCTACTTCCCTGGGCAAC
*
46799150 AGTGGAATAGATTGAA
1 AGTGGAGTAGATTGAA
46799166 TATTTCAGAT
Statistics
Matches: 190, Mismatches: 70, Indels: 40
0.63 0.23 0.13
Matches are distributed among these distances:
41 2 0.01
42 2 0.01
43 57 0.30
44 92 0.48
45 37 0.19
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGCCAGTAGATTCTACTTCCCTGGGCAAC
Found at i:46800755 original size:22 final size:23
Alignment explanation
Indices: 46800720--46800767 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
46800710 AAATATATAT
*
46800720 TTTTTTAAACGAATATTTTCCTA
1 TTTTTTAAACGAATATTTTCATA
*
46800743 TTTTTT-AATGAATATTTTCATA
1 TTTTTTAAACGAATATTTTCATA
46800765 TTT
1 TTT
46800768 ATATGTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.74
23 6 0.26
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTTTTAAACGAATATTTTCATA
Found at i:46802286 original size:199 final size:199
Alignment explanation
Indices: 46801940--46802339 Score: 755
Period size: 199 Copynumber: 2.0 Consensus size: 199
46801930 AATTTCACTG
46801940 TTATTGTTATTTTTATATTAACCTTAAATAAATGCACTGCCCATCCAAAACCTTATTAAAGTAAA
1 TTATTGTTATTTTTATATTAACCTTAAATAAATGCACTGCCCATCCAAAACCTTATTAAAGTAAA
* *
46802005 AAGTTAGTCACCAAATGTGTTTTGTTTTCATGAGTAGGAATTCAACTTTTAACTTAGTGATTAAA
66 AAGTTAGTCACCAAATATGTTTTATTTTCATGAGTAGGAATTCAACTTTTAACTTAGTGATTAAA
*
46802070 GGATGATATGAATAACAGTCACAACACATTTTCTATTAAATTTATTAAAGGAATTATGATAAATT
131 GGATGATATGAATAACAGTCACAACACATTTTCTATTAAATTTATTAAAAGAATTATGATAAATT
46802135 TAAT
196 TAAT
* *
46802139 TTATTTTTATTTTTATATTAACCTTAAATATATGCACTGCCCATCCAAAACCTTATTAAAGTAAA
1 TTATTGTTATTTTTATATTAACCTTAAATAAATGCACTGCCCATCCAAAACCTTATTAAAGTAAA
46802204 AAGTTAGTCACCAAATATGTTTTATTTTCATGAGTAGGAATTCAACTTTTAACTTAGTGATTAAA
66 AAGTTAGTCACCAAATATGTTTTATTTTCATGAGTAGGAATTCAACTTTTAACTTAGTGATTAAA
46802269 GGATGATATGAATAACAGTCACAACACATTTTCTATTAAATTTATTAAAAGAATTATGATAAATT
131 GGATGATATGAATAACAGTCACAACACATTTTCTATTAAATTTATTAAAAGAATTATGATAAATT
46802334 TAAT
196 TAAT
46802338 TT
1 TT
46802340 TCAACGTTTA
Statistics
Matches: 196, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
199 196 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (199 bp):
TTATTGTTATTTTTATATTAACCTTAAATAAATGCACTGCCCATCCAAAACCTTATTAAAGTAAA
AAGTTAGTCACCAAATATGTTTTATTTTCATGAGTAGGAATTCAACTTTTAACTTAGTGATTAAA
GGATGATATGAATAACAGTCACAACACATTTTCTATTAAATTTATTAAAAGAATTATGATAAATT
TAAT
Found at i:46807232 original size:40 final size:40
Alignment explanation
Indices: 46807135--46807318 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
46807125 TTGAATGCTG
* * * *
46807135 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
46807174 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
46807215 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
46807255 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
46807295 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
46807319 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:46807275 original size:80 final size:81
Alignment explanation
Indices: 46807135--46807315 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
46807125 TTGAATGCTG
* *
46807135 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
46807199 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* **
46807215 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
46807276 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
46807295 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
46807316 ATTGTATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:46807339 original size:39 final size:38
Alignment explanation
Indices: 46807136--46807355 Score: 165
Period size: 40 Copynumber: 5.6 Consensus size: 38
46807126 TGAATGCTGT
* * * * *
46807136 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * *
46807176 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * * *
46807216 TCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
46807256 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
46807295 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
46807335 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
46807356 CTTGAACGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.22
40 108 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:46810386 original size:141 final size:141
Alignment explanation
Indices: 46810128--46810411 Score: 498
Period size: 141 Copynumber: 2.0 Consensus size: 141
46810118 TCAAATGATG
46810128 AATGAATGGTTTACAGAATTTGTAAAAACAAATCCGGCAGTACAACAACCTCTACCCCCTCCTAT
1 AATGAATGGTTTACAGAATTTGTAAAAACAAATCCGGCAGTACAACAACCTCTACCCCCTCCTAT
* *
46810193 TTCTTAACCGATTCCCGATATGCCTCAAGGTATATAACTTGTTAGAATTGGTAAACCTCCTT-TA
66 TTCTTAACCGATTCCCGATATGCCTCAAGGTATAGAACTTGTTAGAACTGGTAAACCT-CTTGTA
46810257 GATAAAATTCAT
130 GATAAAATTCAT
* * *
46810269 AATGAATGGTTTACAGAATTTGTAAAAACAAATTCGGCTGTACAACAACCTCTACCTCCTCCTAT
1 AATGAATGGTTTACAGAATTTGTAAAAACAAATCCGGCAGTACAACAACCTCTACCCCCTCCTAT
*
46810334 TTCTTAACCGATTCCCGATATGCCTCAAGGTATAGAACTTGTTAGAACTGGTAAGCCTCTTGTAG
66 TTCTTAACCGATTCCCGATATGCCTCAAGGTATAGAACTTGTTAGAACTGGTAAACCTCTTGTAG
46810399 ATAAAATTCAT
131 ATAAAATTCAT
46810410 AA
1 AA
46810412 ATATGGGGCA
Statistics
Matches: 136, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
140 3 0.02
141 133 0.98
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (141 bp):
AATGAATGGTTTACAGAATTTGTAAAAACAAATCCGGCAGTACAACAACCTCTACCCCCTCCTAT
TTCTTAACCGATTCCCGATATGCCTCAAGGTATAGAACTTGTTAGAACTGGTAAACCTCTTGTAG
ATAAAATTCAT
Found at i:46816159 original size:27 final size:25
Alignment explanation
Indices: 46816119--46816186 Score: 91
Period size: 27 Copynumber: 2.6 Consensus size: 25
46816109 TGATATATGT
46816119 CTCTTTAGAGCTTCCCAATTAAAGG
1 CTCTTTAGAGCTTCCCAATTAAAGG
* *
46816144 CTCTTTAATGAGCTTCCTAATTAATGG
1 CTCTTT-A-GAGCTTCCCAATTAAAGG
*
46816171 CTCTCTAGAGCTTCCC
1 CTCTTTAGAGCTTCCC
46816187 TGATATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 14 0.38
26 2 0.05
27 21 0.57
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (25 bp):
CTCTTTAGAGCTTCCCAATTAAAGG
Found at i:46822235 original size:41 final size:41
Alignment explanation
Indices: 46822190--46822377 Score: 286
Period size: 41 Copynumber: 4.6 Consensus size: 41
46822180 GGTTTTAAAA
* *
46822190 CCTAGCAGGCTAAATTCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
46822231 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46822272 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46822313 CCTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46822354 CCTAACAGGGCTAAGTGCCAGTGA
1 CCTAGCA-GGCTAAGTGCCGGTGA
46822378 ATTTGTTTAA
Statistics
Matches: 133, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 119 0.89
42 14 0.11
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:46829207 original size:41 final size:41
Alignment explanation
Indices: 46829162--46829390 Score: 359
Period size: 41 Copynumber: 5.6 Consensus size: 41
46829152 GGTTTTAAAA
* *
46829162 CCTAGAAGGCTAAGTTCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
46829203 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
46829244 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46829285 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46829326 CCTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
46829367 CCTAACAGGGCTAAGTGCCAGTGA
1 CCTAGCA-GGCTAAGTGCCGGTGA
46829391 GTTTGTTTAA
Statistics
Matches: 174, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
41 160 0.92
42 14 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:46830578 original size:17 final size:16
Alignment explanation
Indices: 46830556--46830609 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
46830546 AATCGCCACC
46830556 AATATTATTTGGTTTGT
1 AATATTATTTGGTTT-T
46830573 AATATTCCATTT-GTTTT
1 AATATT--ATTTGGTTTT
*
46830590 TATATTATTTGGTATTT
1 AATATTATTTGGT-TTT
46830607 AAT
1 AAT
46830610 CGTCACTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
15 4 0.13
16 2 0.06
17 17 0.55
18 4 0.13
19 4 0.13
ACGTcount: A:0.26, C:0.04, G:0.11, T:0.59
Consensus pattern (16 bp):
AATATTATTTGGTTTT
Found at i:46833887 original size:18 final size:19
Alignment explanation
Indices: 46833864--46833906 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
46833854 GAAAATATTA
46833864 ATAAAAAATAGAA-TTTAG
1 ATAAAAAATAGAATTTTAG
46833882 AT-AAAAATAGAATTTTAG
1 ATAAAAAATAGAATTTTAG
46833900 -TAAAAAA
1 ATAAAAAA
46833907 ATTAATAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (19 bp):
ATAAAAAATAGAATTTTAG
Found at i:46833889 original size:17 final size:17
Alignment explanation
Indices: 46833867--46833905 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
46833857 AATATTAATA
46833867 AAAAATAGAA-TTTAGAT
1 AAAAATAGAATTTTAG-T
46833884 AAAAATAGAATTTTAGT
1 AAAAATAGAATTTTAGT
46833901 AAAAA
1 AAAAA
46833906 AATTAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (17 bp):
AAAAATAGAATTTTAGT
Found at i:46839575 original size:29 final size:29
Alignment explanation
Indices: 46839543--46839607 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
46839533 CAAAATTATA
46839543 TATATATAAAT-TTAAAAAAACTT-AAATAT
1 TATATA-AAATATTAAAAAAACTTGAAA-AT
*
46839572 TATATAAAATATTAAAAAATCTTGAAAAT
1 TATATAAAATATTAAAAAAACTTGAAAAT
46839601 TATATAA
1 TATATAA
46839608 TAATGCTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 4 0.12
29 26 0.79
30 3 0.09
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (29 bp):
TATATAAAATATTAAAAAAACTTGAAAAT
Found at i:46839755 original size:669 final size:663
Alignment explanation
Indices: 46838230--46839857 Score: 1714
Period size: 669 Copynumber: 2.4 Consensus size: 663
46838220 AAATTAAATA
* *
46838230 AAAATTATTAAAAATATTGAAAATTATGTAATAATGCTAAATT-ATTGTTTAAAA---AAATG-T
1 AAAATTATTAAAAATATTGAAAATTATATAATAATGCTAAATTAATTTTTTAAAATTCAAATGAT
** *
46838290 ACAATTATGTAATCTTAAATAAGTAAACTATCAATTCAAGTCTATCATTCTAATTATCTTGG-TT
66 A-AATT-TGTAGCCTTAAACAAGTAAACTATCAATTCAAGTCTATCATTCTAATTATCTTGGTTT
* * * * *
46838354 TTTACTCTTATTTTGTTTTCGAAAGAGTTGTTAAATTTATATGGTATTTATATTAATTAACTTGG
129 TTTTCTCTTATTTTGTTTT-AAAAGAGTTCTTAAATTT-TATGGTATTTATGTTATTTAACTTGG
* ** ** *
46838419 AATTTAGTC--CTTGCCAACAAGATGATT--ATATGACTGGTTT-TTTTTTTTAATTTGACTCAA
192 AATTTAGTCATATTGTAAACAAGAT--TTCAATATGACCAGTTTAATTTTTTT-ATTTGACTCAA
* * **
46838479 ACAAATTTATTTGATTATACTTT-TGGATTCTATTAATTAGAGGTAAAGTAATTATCTTATCCCC
254 ACAAATTTATTCGATTATA-TTTGTGGATTCTATTAATTAAAGGTAAAGTAACAATCTTATCCCC
** *** * *
46838543 ATTTTTAGATTTCTAAGTAATCAATTCATCATAAGCTACATACTTTTGGCTAGAGGAGAGCAAAA
318 ATTTAAAGAAAACTAAGTAATCAACTCATCAGAAGCTACATACTTTTGGCTAGAGGAGAGCAAAA
* * *
46838608 CTCAATTTGATTTGAAGAATAGAAATTTTCTTCGAATTTTAAGTTAATGATTTTTTTTGAATCAA
383 CTCAATTTGATTTGAAGAATAGAAAATTTCTTCAAATTTTAAGTTAATGATTTTTTTTAAATCAA
* *
46838673 CTTGATTCAGTTTTTCGAGTTTCAAGTTGAGTTGAATTTCACAACTTGAATAATAAATTGATGTA
448 CTTGATTCAGTTTTTCGAGTTTCAAGTTGAGTTGAATTTCACAACTTGAATAACAAATTGAGGTA
** * * * *
46838738 CGTAATCATTAGGTCCCTGGCAGTTTGAAAAATGTACAAATTAGTCCCTCTCAAAAAATTTCCAA
513 AATAACCATTAGGTCCCTGACAGTTTGAAAAATGTACAAATAAG--CCTCTC-----ATGT-C-A
* *
46838803 AAAAAATTCAAATAATCTTCTAAAATTCAAAATATTTATAATGTTTTCCCCAAAATTTATAAATA
569 AAAAAATTCAAATAATCTTCAAAAATTCAAAATATTTATAATGTTTTCCACAAAATTTAT-AATA
*
46838868 CATATAAATGAAAACAATTAAATATCATATT
633 CATATAAATGAAAAAAATTAAATATCATATT
46838899 AAAATTATTAAAAATATTGAAAATTATATAATAATGCTAAATTATTATTATTTTTTTAAAAAAAT
1 AAAATTATTAAAAATATTGAAAATTATATAATAATGCT-AA--ATTA--A-TTTTTT---AAAAT
** * * * *
46838964 TCTAAAACAATAAATTTGAAGCCTTAAACAAGTAAACTATCCATTTAAGTCTATCATT-TGATTT
57 TC--AAATGATAAATTTGTAGCCTTAAACAAGTAAACTATCAATTCAAGTCTATCATTCT-AATT
** * * *
46839028 ATCTTTATTTTTTTCTCTTATTTTGTTTTATAAAAAGTTCTTAGACTTTTATGGTATTTATGTTC
119 ATCTTGGTTTTTTTCTCTTATTTTGTTTTA-AAAGAGTTCTTA-AATTTTATGGTATTTATGTTA
* * * *
46839093 TTTAACTTAGAATTTAATCATATTGTTAACAAAATTTCAATATGACCAGTTTAATTTCTTTTATT
182 TTTAACTTGGAATTTAGTCATATTGTAAACAAGATTTCAATATGACCAGTTTAATTT-TTTTATT
* * * * *
46839158 CGACTCTAACAAATTT-TTCGATTATATTTGTGGATTTTGTTAATTAAAGGTAAAGTAGCAATCT
246 TGACTCAAACAAATTTATTCGATTATATTTGTGGATTCTATTAATTAAAGGTAAAGTAACAATCT
* * * * *
46839222 TATTCCCATTTAAAGAAAAC-ATAGTAATCAACTCATC-GAAGCTACATTCTTTTGGTTAGTGGT
311 TATCCCCATTTAAAGAAAACTA-AGTAATCAACTCATCAGAAGCTACATACTTTTGGCTAGAGGA
* *
46839285 GAGCAAAACTCAATTTGATTTGAAGAATGGAAAATTTCTTTAAATTTCT-AGTTAATCGATTTTT
375 GAGCAAAACTCAATTTGATTTGAAGAATAGAAAATTTCTTCAAATTT-TAAGTTAAT-GATTTTT
* *
46839349 TTGAATAAACTCGAA-TAAGTGATTCATTTTTTCGAGTTT-GAGTT-AGTTGAATTTCACAACTT
438 TT---TAAA-TC-AACT---TGATTCAGTTTTTCGAGTTTCAAGTTGAGTTGAATTTCACAACTT
* * * ** * *
46839411 GAATAACAAATTGAGGTAAATACCCCTTGGGTTGCTGATAGTTTTG-AAAATGTGCAAATAAG-C
495 GAATAACAAATTGAGGTAAATAACCATTAGGTCCCTGACAG-TTTGAAAAATGTACAAATAAGCC
* *
46839474 -CTC-TGT-AAAAAAATTCAAATAATCTTCAAAAATTCAAAATTTTTATAAAATGTTTTTCACAA
559 TCTCATGTCAAAAAAATTCAAATAATCTTCAAAAATTCAAAATATTTAT--AATGTTTTCCACAA
* * *
46839536 AA-TTAT-ATATATATAAATTTAAAAAAACTTAAATATTATA-T
622 AATTTATAATACATATAAA-TGAAAAAAA-TTAAATATCATATT
*
46839577 AAAA-TATTAAAAAATCTTGAAAATTATATAATAATGCTAAATTAATTTTTTAAAATTTCAGAAT
1 AAAATTATT-AAAAATATTGAAAATTATATAATAATGCTAAATTAATTTTTTAAAA-TTCA-AAT
* * *
46839641 GATAAATTTGTAGCCTTAAACAAGTAAACCATCAATTCAAGTTTACCATTCTAATTATCTTGGTT
63 GATAAATTTGTAGCCTTAAACAAGTAAACTATCAATTCAAGTCTATCATTCTAATTATCTTGGTT
46839706 TTTTTCTCTTATTTTGTTTTAAAATGAGTTCTTAAATTCTTATGGTATTTATGTTATTTAACTTG
128 TTTTTCTCTTATTTTGTTTTAAAA-GAGTTCTTAAATT-TTATGGTATTTATGTTATTTAACTTG
* * * * *
46839771 GAA-TTAGTCATATTGTAAACAAGTTTTCAATAGGGCCAGTTTAATTTTTTAAATTTGACTCGAA
191 GAATTTAGTCATATTGTAAACAAGATTTCAATATGACCAGTTTAATTTTTT-TATTTGACTCAAA
* *
46839835 TAAATTTATTCAATTATATTTGT
255 CAAATTTATTCGATTATATTTGT
46839858 TGTAACAACC
Statistics
Matches: 800, Mismatches: 108, Indels: 102
0.79 0.11 0.10
Matches are distributed among these distances:
667 3 0.00
668 61 0.08
669 166 0.21
670 6 0.01
672 9 0.01
673 1 0.00
675 5 0.01
676 5 0.01
677 16 0.02
678 78 0.10
679 19 0.02
680 14 0.02
681 2 0.00
682 1 0.00
683 44 0.05
684 69 0.09
685 81 0.10
686 96 0.12
687 23 0.03
688 5 0.01
689 3 0.00
690 3 0.00
691 63 0.08
692 8 0.01
693 19 0.02
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (663 bp):
AAAATTATTAAAAATATTGAAAATTATATAATAATGCTAAATTAATTTTTTAAAATTCAAATGAT
AAATTTGTAGCCTTAAACAAGTAAACTATCAATTCAAGTCTATCATTCTAATTATCTTGGTTTTT
TTCTCTTATTTTGTTTTAAAAGAGTTCTTAAATTTTATGGTATTTATGTTATTTAACTTGGAATT
TAGTCATATTGTAAACAAGATTTCAATATGACCAGTTTAATTTTTTTATTTGACTCAAACAAATT
TATTCGATTATATTTGTGGATTCTATTAATTAAAGGTAAAGTAACAATCTTATCCCCATTTAAAG
AAAACTAAGTAATCAACTCATCAGAAGCTACATACTTTTGGCTAGAGGAGAGCAAAACTCAATTT
GATTTGAAGAATAGAAAATTTCTTCAAATTTTAAGTTAATGATTTTTTTTAAATCAACTTGATTC
AGTTTTTCGAGTTTCAAGTTGAGTTGAATTTCACAACTTGAATAACAAATTGAGGTAAATAACCA
TTAGGTCCCTGACAGTTTGAAAAATGTACAAATAAGCCTCTCATGTCAAAAAAATTCAAATAATC
TTCAAAAATTCAAAATATTTATAATGTTTTCCACAAAATTTATAATACATATAAATGAAAAAAAT
TAAATATCATATT
Found at i:46843954 original size:53 final size:53
Alignment explanation
Indices: 46843870--46843975 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
46843860 TTTTATAGTG
* * * ** ** *
46843870 CCAATTACTTGAATAAAAGAGATTTTTTGTAGAATTTATTTGCTCCATTTGAT
1 CCAATCACATGAATAAAAGAGAGTTCATGTAGAATTTAACTACTCCATTTGAT
46843923 CCAATCACATGAATAAAAGAGAGTTCATGTAGAATTTAACTACTCCATTTGAT
1 CCAATCACATGAATAAAAGAGAGTTCATGTAGAATTTAACTACTCCATTTGAT
46843976 TGTTCTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (53 bp):
CCAATCACATGAATAAAAGAGAGTTCATGTAGAATTTAACTACTCCATTTGAT
Found at i:46845090 original size:18 final size:19
Alignment explanation
Indices: 46845040--46845092 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
46845030 TTAGAAGAGC
*
46845040 TTATCTTTATTTATTTCACT
1 TTATTTTTATTT-TTTCACT
*
46845060 TGATTTTGT-TTTTTTC-CT
1 TTATTTT-TATTTTTTCACT
46845078 TTATTTTTATTTTTT
1 TTATTTTTATTTTTT
46845093 ATTTTAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 1 0.04
18 14 0.50
19 4 0.14
20 8 0.29
21 1 0.04
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (19 bp):
TTATTTTTATTTTTTCACT
Found at i:46849843 original size:30 final size:31
Alignment explanation
Indices: 46849809--46849868 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 31
46849799 CATATTATGG
46849809 AAAGTCAAAGATATGGGTATC-AAATATTGA
1 AAAGTCAAAGATATGGGTATCGAAATATTGA
46849839 AAAGTCAAAGATATGGGTATCGAAATATTG
1 AAAGTCAAAGATATGGGTATCGAAATATTG
46849869 GCATAAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 21 0.72
31 8 0.28
ACGTcount: A:0.45, C:0.07, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGTCAAAGATATGGGTATCGAAATATTGA
Found at i:46854476 original size:30 final size:31
Alignment explanation
Indices: 46854442--46854505 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 31
46854432 ATCCATATTA
46854442 TGGAAAGTCAAAGATATGGGTA-TCAAATAT
1 TGGAAAGTCAAAGATATGGGTATTCAAATAT
*
46854472 TGGAAAGTCAAAGATATGGGTATTGAAATAT
1 TGGAAAGTCAAAGATATGGGTATTCAAATAT
46854503 TGG
1 TGG
46854506 CATAAGAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.41, C:0.05, G:0.27, T:0.28
Consensus pattern (31 bp):
TGGAAAGTCAAAGATATGGGTATTCAAATAT
Found at i:46854482 original size:15 final size:16
Alignment explanation
Indices: 46854440--46854490 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 16
46854430 GCATCCATAT
46854440 TATGGAAAGTCAAAGA
1 TATGGAAAGTCAAAGA
** *
46854456 TATGGGTA-TCAAATA
1 TATGGAAAGTCAAAGA
46854471 T-TGGAAAGTCAAAGA
1 TATGGAAAGTCAAAGA
46854486 TATGG
1 TATGG
46854491 GTATTGAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 4 0.15
15 14 0.52
16 9 0.33
ACGTcount: A:0.43, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
TATGGAAAGTCAAAGA
Found at i:46860057 original size:21 final size:19
Alignment explanation
Indices: 46860014--46860086 Score: 75
Period size: 18 Copynumber: 3.9 Consensus size: 19
46860004 ATTTGTCCTA
*
46860014 TTATTAT-TACTATTATAAC
1 TTATTATATA-TATTATATC
46860033 -TA-TATATATA-TATCATC
1 TTATTATATATATTAT-ATC
46860050 TTATTATATAT-TTATATC
1 TTATTATATATATTATATC
46860068 TTATTATATATATCTATAT
1 TTATTATATATAT-TATAT
46860087 ATCTCTTTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
16 3 0.07
17 7 0.15
18 20 0.43
19 11 0.24
20 5 0.11
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (19 bp):
TTATTATATATATTATATC
Found at i:46860070 original size:18 final size:19
Alignment explanation
Indices: 46860035--46860080 Score: 76
Period size: 18 Copynumber: 2.5 Consensus size: 19
46860025 ATTATAACTA
46860035 TATATATATATCATCTTAT
1 TATATATATATCATCTTAT
*
46860054 TATATATTTAT-ATCTTAT
1 TATATATATATCATCTTAT
46860072 TATATATAT
1 TATATATAT
46860081 CTATATATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (19 bp):
TATATATATATCATCTTAT
Found at i:46860248 original size:30 final size:29
Alignment explanation
Indices: 46860214--46860270 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
46860204 TTATATATAT
*
46860214 ATATACATACTTACACTGTTTTATTTTACG
1 ATATACATACTTACA-TCTTTTATTTTACG
*
46860244 ATATACATACTTATATCTTTTATTTTA
1 ATATACATACTTACATCTTTTATTTTA
46860271 TGTAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.32, C:0.14, G:0.04, T:0.51
Consensus pattern (29 bp):
ATATACATACTTACATCTTTTATTTTACG
Found at i:46864068 original size:12 final size:11
Alignment explanation
Indices: 46864043--46864129 Score: 77
Period size: 12 Copynumber: 7.5 Consensus size: 11
46864033 AAAAATTGTT
46864043 AAAAAGAAGAAG
1 AAAAA-AAGAAG
46864055 AAAAAAAGAGAG
1 AAAAAAAGA-AG
46864067 AAAAAAAGAA-
1 AAAAAAAGAAG
* * *
46864077 AAAGAAGGAAA
1 AAAAAAAGAAG
46864088 AAGAAAAAGAAG
1 AA-AAAAAGAAG
*
46864100 AAAAAAGAAAAG
1 AAAAAA-AGAAG
*
46864112 AAAAAAGAAAAG
1 AAAAAA-AGAAG
46864124 AAAAAA
1 AAAAAA
46864130 GGAGAGGCCA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
10 8 0.12
11 11 0.17
12 46 0.71
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAG
Found at i:46864081 original size:26 final size:24
Alignment explanation
Indices: 46864043--46864128 Score: 84
Period size: 26 Copynumber: 3.5 Consensus size: 24
46864033 AAAAATTGTT
*
46864043 AAAAAGAAGAAGAAAAAAAGAGAGAA
1 AAAAAGAAAAAGAAAAAAA-AGA-AA
*
46864069 AAAAAGAAAAAGAAGGAAAAAGAAA
1 AAAAAGAAAAAGAA-AAAAAAGAAA
* *
46864094 AAGAAGAAAAAAGAAAAGAAA-AAA
1 AAAAAG-AAAAAGAAAAAAAAGAAA
*
46864118 GAAAAGAAAAA
1 AAAAAGAAAAA
46864129 AGGAGAGGCC
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.10
24 7 0.14
25 11 0.22
26 24 0.47
27 4 0.08
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (24 bp):
AAAAAGAAAAAGAAAAAAAAGAAA
Found at i:46864090 original size:16 final size:16
Alignment explanation
Indices: 46864043--46864128 Score: 88
Period size: 16 Copynumber: 5.3 Consensus size: 16
46864033 AAAAATTGTT
*
46864043 AAAAAGAAG-AAGAA-
1 AAAAAGAAGAAAAAAG
46864057 AAAAAGAGAGAAAAAAAG
1 AAAAAGA-AG-AAAAAAG
*
46864075 AAAAAGAAGGAAAAAG
1 AAAAAGAAGAAAAAAG
46864091 AAAAAGAAGAAAAAAG
1 AAAAAGAAGAAAAAAG
*
46864107 -AAAAGAAAAAAGAAAAG
1 AAAAAG-AAGAA-AAAAG
46864124 AAAAA
1 AAAAA
46864129 AGGAGAGGCC
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
14 7 0.11
15 7 0.11
16 25 0.41
17 11 0.18
18 11 0.18
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAAAGAAGAAAAAAG
Found at i:46864095 original size:7 final size:7
Alignment explanation
Indices: 46864068--46864130 Score: 53
Period size: 7 Copynumber: 9.0 Consensus size: 7
46864058 AAAAGAGAGA
46864068 AAAAAAG
1 AAAAAAG
46864075 AAAAAGAAG
1 -AAAA-AAG
*
46864084 GAAAAAG
1 AAAAAAG
46864091 -AAAAAG
1 AAAAAAG
46864097 AAGAAAA-
1 AA-AAAAG
46864104 AAGAAAAG
1 AA-AAAAG
46864112 AAAAAAG
1 AAAAAAG
46864119 --AAAAG
1 AAAAAAG
46864124 AAAAAAG
1 AAAAAAG
46864131 GAGAGGCCAA
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
5 5 0.10
6 6 0.12
7 21 0.44
8 13 0.27
9 3 0.06
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:46864129 original size:26 final size:27
Alignment explanation
Indices: 46864043--46864129 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 27
46864033 AAAAATTGTT
46864043 AAAAAGAAGAAGAAAAAAAGAGAGAA-AAA
1 AAAAAGAAGAAG-AAAAAAGA-A-AAGAAA
*
46864072 AAGAAA-AAGAAGGAAAAAGAAAAAGAAGA
1 AA-AAAGAAGAAGAAAAAAG-AAAAGAA-A
46864101 AAAAAGAA-AAGAAAAAAGAAAAGAAA
1 AAAAAGAAGAAGAAAAAAGAAAAGAAA
46864127 AAA
1 AAA
46864130 GGAGAGGCCA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
26 4 0.08
27 9 0.18
28 21 0.41
29 14 0.27
30 3 0.06
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (27 bp):
AAAAAGAAGAAGAAAAAAGAAAAGAAA
Found at i:46865517 original size:50 final size:50
Alignment explanation
Indices: 46865444--46866216 Score: 319
Period size: 50 Copynumber: 15.5 Consensus size: 50
46865434 GAAATTCAAA
* * * *
46865444 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCCATGCAACGGAGC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGACATGCAACGGAAC
* * * *** *
46865494 AGGTTGAAGCTACGACGGTGAATCTCACTTCCCCA--ACATTGCAATTTAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTT-CCCAGGACA-TGCAACGGAAC
* * ** * * *
46865544 AGATTGAAACCACAACGGTGAATCTTACTTCCCAGGTGATGTAGCAGAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGACATGCAACGGAAC
* * * * *** *
46865594 AAATTGAAGCTACGACGGTGAGTCTCACTTCCCCA--ACATTGCAATTTAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTT-CCCAGGACA-TGCAACGGAAC
* * *
46865644 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAGG-CGATGCAGCGAAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGAC-ATGCAACGGAAC
* * * * *** *
46865694 ATATTGAAGCTACGACGGCGAATCTCACTT-CC-GTGACATTGCAATTCAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAG-GACA-TGCAACGGAAC
* * *
46865744 AGATTGAAGCCACAACGGTGAATCTTACTTCCCAAG-CGATGCAGCGGAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGAC-ATGCAACGGAAC
* * * *** *
46865794 AAATTGAAGCTACGACGGTGAATCTCACTT-CC-GCGACATTGCAATTCAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAG-GACA-TGCAACGGAAC
* * * * * *
46865844 AGATTGAAGCCACAATGGCGAATCTTACTTCCCAAG-CGATGCAGCAGAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGAC-ATGCAACGGAAC
* * ** *** *
46865894 AGATTGAAGCGACGACGGCAAATCTCACTT-CC-GCGACATTGCAATTCAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAG-GACA-TGCAACGGAAC
** *
46865944 AGATTGAAGCCACAATAGTGAATCTTACTTCCCAGG-CGATGC-ACGGAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGAC-ATGCAACGGAAC
* * ** *** *
46865993 ATATTGAAGCTACAACGGCAAATCTCACTTCCTC--GACATTGCAATTTAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTTCC-CAGGACA-TGCAACGGAAC
* * * * * * * * *
46866043 ATATTTAAGCCATAACAGCGAATCTTACTTCCCAGG-CGATGTAGCAGAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGAC-ATGCAACGGAAC
* * * * * * ** *
46866093 AAATTGAAGCTACGACGGCGAATCTCATTTCCC-CGACATTGCAA-TTAAA
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGACA-TGCAACGGAAC
* * * * * ** *
46866142 AGATTGAAACGACAACGGTGAATCTTATTTTCCA-GAGGGTGCAGCGGAAC
1 AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGA-CATGCAACGGAAC
* **
46866192 AGATTGAAGCTACAACAATGAATCT
1 AGATTGAAGCCACAACGGTGAATCT
46866217 TGTTTCCCCG
Statistics
Matches: 517, Mismatches: 167, Indels: 78
0.68 0.22 0.10
Matches are distributed among these distances:
48 3 0.01
49 92 0.18
50 397 0.77
51 24 0.05
52 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGTGAATCTCACTTCCCAGGACATGCAACGGAAC
Found at i:46865614 original size:100 final size:100
Alignment explanation
Indices: 46865436--46866656 Score: 1264
Period size: 100 Copynumber: 12.3 Consensus size: 100
46865426 CATAGTTTGA
* * * * **
46865436 AATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCCATGCAACGGAGCAGGTTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
* *
46865501 AGCTACGACGGTGAATCTCACTTCCCCAACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * * * *
46865536 AATTTAAAAGATTGAAACCACAACGGTGAATCTTACTTCCCAGGTGATGTAGCAGAACAAATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
* * *
46865601 AGCTACGACGGTGAGTCTCACTTCCCCAACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * *
46865636 AATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGAAACATATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
**
46865701 AGCTACGACGGCGAATCTCACTTCCGTGACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * *
46865736 AATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAAGCGATGCAGCGGAACAAATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
* *
46865801 AGCTACGACGGTGAATCTCACTTCCGCGACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * * * *
46865836 AATTCAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCAAGCGATGCAGCAGAACAGATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
* * *
46865901 AGCGACGACGGCAAATCTCACTTCCGCGACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* ** * *
46865936 AATTCAAAAGATTGAAGCCACAATAGTGAATCTTACTTCCCAGGCGATGCA-CGGAACATATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
* * *
46866000 AGCTACAACGGCAAATCTCACTTCCTCGACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * * * * *
46866035 AATTTAAAATATTTAAGCCATAACAGCGAATCTTACTTCCCAGGCGATGTAGCAGAACAAATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
*
46866100 AGCTACGACGGCGAATCTCATTTCCCCGACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * * * * * *
46866135 AA-TTAAAAGATTGAAACGACAACGGTGAATCTTATTTTCCAGAG-GGTGCAGCGGAACAGATTG
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAG-GCGATGCAGCGGAACAAATTG
* *** *** *
46866198 AAGCTACAACAATGAATCTTGTTTCCCCGACATTGT
65 AAGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * *** * * *
46866234 AATTAAAAAGATTGAAGCTACAACGGCGAATCTTACTTTTTAGGC-AGTACAGCGAAACAGATTG
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGA-TGCAGCGGAACAAATTG
* * ** *
46866298 AAGCTATGACGGCAAATCTTGCTTCCCCGACAATGC
65 AAGCTACGACGGCGAATCTCACTTCCCCGACATTGC
** * ** * * * * *
46866334 AA-TTAAAAGATTGGGGCCAAAACAACGAATCTTACTT-CCAGGCGGTGTAGCGAAATAGATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
* * ** * *
46866397 AGCTAGGACGGGGAATCTTGCTTACCCGACATTAC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * * *
46866432 AA-TTAAAAGATTGAGGCCACAACGACGAATCTTACTT-CCAGGCGGTGCAGTGGAA-AAGATTG
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAA-ATTG
* * ** * * *
46866494 AAGCTACAACGACGAATCTTGCTTCCCCAATATTGT
65 AAGCTACGACGGCGAATCTCACTTCCCCGACATTGC
* * * * * * * *
46866530 AA-TTAAAAGATTGAGGCCACAACAGCGAATCTTACTT-CCAGGTGGTACAGCGAAATAGATTGA
1 AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
** * *
46866593 AGCTACGA---CGAATCTTGCTTTCTCGACATTGC
66 AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
*
46866625 AATTTAAAAGATTGAAGTCACAACGGCGAATC
1 AATTTAAAAGATTGAAGCCACAACGGCGAATC
46866657 ACGCTTCCCC
Statistics
Matches: 965, Mismatches: 147, Indels: 22
0.85 0.13 0.02
Matches are distributed among these distances:
95 21 0.02
96 26 0.03
97 1 0.00
98 189 0.20
99 194 0.20
100 534 0.55
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (100 bp):
AATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAAATTGA
AGCTACGACGGCGAATCTCACTTCCCCGACATTGC
Found at i:46866462 original size:49 final size:48
Alignment explanation
Indices: 46866409--46866707 Score: 210
Period size: 49 Copynumber: 6.1 Consensus size: 48
46866399 CTAGGACGGG
*
46866409 GAATCTTGCTTACCCGACATTACAATTAAAAGATTGAGGCCACAACGAC
1 GAATCTTGCTT-CCCGACATTACAATTAAAAGATTGAAGCCACAACGAC
* * * ** * * * *
46866458 GAATCTTACTTCCAGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGAC
1 GAATCTTGCTTCCCGACATTACAAT-TAAAAGATTGAAGCCACAACGAC
* * ** *
46866507 GAATCTTGCTTCCCCAATATTGTAATTAAAAGATTGAGGCCACAAC-AGC
1 GAATCTTGCTT-CCCGACATTACAATTAAAAGATTGAAGCCACAACGA-C
* * **** *** *
46866556 GAATCTTACTTCCAGGTGGTACAGCGAAATAGATTGAAG---CTACGAC
1 GAATCTTGCTTCCCGACATTACAATTAAA-AGATTGAAGCCACAACGAC
* * * *
46866602 GAATCTTGCTTTCTCGACATTGCAATTTAAAAGATTGAAGTCACAACGGC
1 GAATCTTGC-TTCCCGACATTACAA-TTAAAAGATTGAAGCCACAACGAC
** *
46866652 GAATCACGCTTCCCCGACATTACAATTAAAAGATTGAGGCCACAACGAC
1 GAATCTTGCTT-CCCGACATTACAATTAAAAGATTGAAGCCACAACGAC
46866701 GAATCTT
1 GAATCTT
46866708 ACCTTCCCAG
Statistics
Matches: 182, Mismatches: 57, Indels: 22
0.70 0.22 0.08
Matches are distributed among these distances:
46 12 0.07
47 17 0.09
48 20 0.11
49 104 0.57
50 29 0.16
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (48 bp):
GAATCTTGCTTCCCGACATTACAATTAAAAGATTGAAGCCACAACGAC
Found at i:46866663 original size:145 final size:148
Alignment explanation
Indices: 46866485--46866777 Score: 362
Period size: 145 Copynumber: 2.0 Consensus size: 148
46866475 GGTGCAGTGG
** * **
46866485 AAAAGATTGAAGCTACAACGACGAATCTTGCTTCCCCAATATTGTAATTAAAAGATTGAGGCCAC
1 AAAAGATTGAAGCTACAACGACGAATCACGCTTCCCCAACATTACAATTAAAAGATTGAGGCCAC
* * *
46866550 AAC-AGCGAATCTTA-CTT-CCAGGTGGTACAGCGAAATAGATTGAAGCT-ACGACGAATCTTGC
66 AACGA-CGAATCTTACCTTCCCAGGCGGTACAGCGAAAGAGATTGAAGCTAACGACGAATCTTCC
* *
46866611 TTTCTCGACATTGCAATTT
130 TTCCCCGACATTGCAATTT
* *
46866630 AAAAGATTGAAG-TCACAACGGCGAATCACGCTTCCCCGACATTACAATTAAAAGATTGAGGCCA
1 AAAAGATTGAAGCT-ACAACGACGAATCACGCTTCCCCAACATTACAATTAAAAGATTGAGGCCA
** * * *
46866694 CAACGACGAATCTTACCTTCCCAGGCGGTGTAGTGGAAGAGATTGAAGCTACAACGGCGAATCTT
65 CAACGACGAATCTTACCTTCCCAGGCGGTACAGCGAAAGAGATTGAAGCT--AACGACGAATCTT
46866759 CCTTCCCCGACATTGCAAT
128 CCTTCCCCGACATTGCAAT
46866778 CTCATTTCCC
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
144 1 0.01
145 68 0.55
146 4 0.03
147 24 0.19
150 27 0.22
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (148 bp):
AAAAGATTGAAGCTACAACGACGAATCACGCTTCCCCAACATTACAATTAAAAGATTGAGGCCAC
AACGACGAATCTTACCTTCCCAGGCGGTACAGCGAAAGAGATTGAAGCTAACGACGAATCTTCCT
TCCCCGACATTGCAATTT
Found at i:46866739 original size:196 final size:194
Alignment explanation
Indices: 46865741--46866764 Score: 464
Period size: 199 Copynumber: 5.2 Consensus size: 194
46865731 ATTGCAATTC
* * * * * * * * *
46865741 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAAGCGATGCAGCGGAACAAATTGAAGCTA
1 AAAAGATTGAGGCCACAACAGCGAATCTTACTT-CCAGGCGGTACAGCGAAATAGATTGAAGCTA
** * * * **
46865806 CGACGGTGAATCTCACTT-CCGCGACATTGCAATTCAAAAGATTGAAGCCACAATGGCGAATCTT
65 CGAC-G-GAATCTTGCTTACC-CGACATTACAATT-AAAAGATTGAAGCCACAACGACGAATCAC
* *** * * * * * * *
46865870 ACTTCCCA-AGC-GATGCAGCAGAACAGATTGAAGCGACGACGGCAAATC-TCACTTCCGCGACA
126 ACTT-CCAGA-CAG-TACAATGGAAAAGATTGAAGCCACAACGACGAATCTTC-CTTCCCCAACA
* * *
46865932 TTGCAATTC
187 GTGTAA-TG
* * * * * * * *
46865941 AAAAGATTGAAGCCACAATAGTGAATCTTACTTCCCAGGCGATGCA-CGGAACATATTGAAGCTA
1 AAAAGATTGAGGCCACAACAGCGAATCTTACTT-CCAGGCGGTACAGCGAAATAGATTGAAGCTA
* ** * * * * *
46866005 CAACGGCAAATCTCACTT-CCTCGACATTGCAATTTAAAATATTTAAGCCATAAC-AGCGAATCT
65 CGACGG--AATCTTGCTTACC-CGACATTACAA-TTAAAAGATTGAAGCCACAACGA-CGAATCA
* * * * * * *
46866068 TACTTCCCAGGCGATGTAGC-A--GAACAA-ATTGAAGCTACGACGGCGAATC-TCATTTCCCCG
125 CACTT-CCAGAC-A-GTA-CAATGGAA-AAGATTGAAGCCACAACGACGAATCTTC-CTTCCCCA
* * *
46866128 ACATTGCAATT
184 ACAGTGTAATG
** * * * * * * *
46866139 AAAAGATTGAAACGACAACGGTGAATCTTATTTTCCAGAG-GGTGCAGCGGAACAGATTGAAGCT
1 AAAAGATTGAGGCCACAACAGCGAATCTTA-CTTCCAG-GCGGTACAGCGAAATAGATTGAAGCT
* * * * ** * * **
46866203 ACAACAATGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCTACAACGGCGAATCTT
64 ACGAC--GGAATCTTGCTTACCCGACATTACAATT-AAAAGATTGAAGCCACAACGACGAATCAC
** * * ** * * * * *
46866268 ACTTTTTAGGCAGTAC-A-GCGAAACAGATTGAAGCTATGACGGCAAATCTTGCTTCCCCGACAA
126 AC-TTCCAGACAGTACAATG-GAAA-AGATTGAAGCCACAACGACGAATCTTCCTTCCCCAACAG
* *
46866331 TGCAATT
188 TGTAATG
* * * ** *
46866338 AAAAGATTGGGGCCAAAACAACGAATCTTACTTCCAGGCGGTGTAGCGAAATAGATTGAAGCTAG
1 AAAAGATTGAGGCCACAACAGCGAATCTTACTTCCAGGCGGTACAGCGAAATAGATTGAAGCTAC
* **
46866403 GACGGGGAATCTTGCTTACCCGACATTACAATTAAAAGATTGAGGCCACAACGACGAATCTTACT
66 GAC--GGAATCTTGCTTACCCGACATTACAATTAAAAGATTGAAGCCACAACGACGAATCACACT
* * * * * * * *
46866468 TCCAGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGACGAATCTTGCTTCCCCAATATTGTAAT
129 TCCAGACAGTACAATGGAAAAGATTGAAGCCACAACGACGAATCTTCCTTCCCCAACAGTGTAAT
*
46866533 T
194 G
*
46866534 AAAAGATTGAGGCCACAACAGCGAATCTTACTTCCAGGTGGTACAGCGAAATAGATTGAAGCTAC
1 AAAAGATTGAGGCCACAACAGCGAATCTTACTTCCAGGCGGTACAGCGAAATAGATTGAAGCTAC
* * * * * *
46866599 GAC-GAATCTTGCTTTCTCGACATTGCAATTTAAAAGATTGAAGTCACAACGGCGAATCACGCTT
66 GACGGAATCTTGCTTACCCGACATTACAA-TTAAAAGATTGAAGCCACAACGACGAATCACACTT
* * * * * *
46866663 CCCCGACATTACAAT-TAAAAGATTGAGGCCACAACGACGAATCTTACCTT-CCCAGGCGGTGTA
130 -CCAGACAGTACAATGGAAAAGATTGAAGCCACAACGACGAATCTT-CCTTCCCCA-ACAGTGTA
*
46866726 GTGG
192 AT-G
* * * * *
46866730 AAGAGATTGAAGCTACAACGGCGAATCTTCCTTCC
1 AAAAGATTGAGGCCACAACAGCGAATCTTACTTCC
46866765 CCGACATTGC
Statistics
Matches: 674, Mismatches: 118, Indels: 68
0.78 0.14 0.08
Matches are distributed among these distances:
193 22 0.03
194 60 0.09
195 16 0.02
196 140 0.21
197 38 0.06
198 98 0.15
199 245 0.36
200 51 0.08
201 2 0.00
202 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (194 bp):
AAAAGATTGAGGCCACAACAGCGAATCTTACTTCCAGGCGGTACAGCGAAATAGATTGAAGCTAC
GACGGAATCTTGCTTACCCGACATTACAATTAAAAGATTGAAGCCACAACGACGAATCACACTTC
CAGACAGTACAATGGAAAAGATTGAAGCCACAACGACGAATCTTCCTTCCCCAACAGTGTAATG
Found at i:46867137 original size:85 final size:84
Alignment explanation
Indices: 46866977--46867159 Score: 348
Period size: 85 Copynumber: 2.2 Consensus size: 84
46866967 TATCTCTCTG
46866977 AAGTTGCAGTAGAGTAGATCGCATCAGACTTTATTTCTTAAAGATGCAGTAAAACAGGTTGAAGA
1 AAGTTGCAGTAGAGTAGATCGCATCAGACTTTATTTCTTAAAGATGCAGTAAAACAGGTTGAAGA
*
46867042 TACAAGTCTTATCCCCCTA
66 TACAAGTCTTATACCCCTA
46867061 AAGTTGCAGTAGAGTAGATCGCATCAGACTTTATTTTCTTAAAGATGCAGTAAAACAGGTTGAAG
1 AAGTTGCAGTAGAGTAGATCGCATCAGACTTTA-TTTCTTAAAGATGCAGTAAAACAGGTTGAAG
46867126 ATACAAGTCTTATACCCCTA
65 ATACAAGTCTTATACCCCTA
46867146 AAGTTGCAGTAGAG
1 AAGTTGCAGTAGAG
46867160 CAGACTGAGC
Statistics
Matches: 97, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 33 0.34
85 64 0.66
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (84 bp):
AAGTTGCAGTAGAGTAGATCGCATCAGACTTTATTTCTTAAAGATGCAGTAAAACAGGTTGAAGA
TACAAGTCTTATACCCCTA
Found at i:46867746 original size:13 final size:13
Alignment explanation
Indices: 46867728--46867754 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46867718 GAAACAAAGA
46867728 AACCCTAGCCTCT
1 AACCCTAGCCTCT
46867741 AACCCTAGCCTCT
1 AACCCTAGCCTCT
46867754 A
1 A
46867755 CCGCCGCACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.44, G:0.07, T:0.22
Consensus pattern (13 bp):
AACCCTAGCCTCT
Found at i:46868941 original size:18 final size:19
Alignment explanation
Indices: 46868905--46868951 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
46868895 TTATAACTAT
46868905 TTATATATATATCATCTTA
1 TTATATATATATCATCTTA
*
46868924 TTATATATTTAT-ATCTTA
1 TTATATATATATCATCTTA
46868942 TTATATATAT
1 TTATATATAT
46868952 CTATATATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATATATATCATCTTA
Found at i:46869142 original size:29 final size:30
Alignment explanation
Indices: 46869087--46869143 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
46869077 ATATATATAT
*
46869087 ATATACATACTTACACTGTTTTATTTTACG
1 ATATACATACTTACACTCTTTTATTTTACG
* *
46869117 ATATACATTCTTATA-TCTTTTATTTTA
1 ATATACATACTTACACTCTTTTATTTTA
46869144 TGTAATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.30, C:0.14, G:0.04, T:0.53
Consensus pattern (30 bp):
ATATACATACTTACACTCTTTTATTTTACG
Found at i:46872179 original size:4 final size:4
Alignment explanation
Indices: 46872170--46872196 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
46872160 AAGAATGCAA
46872170 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
46872197 AGATACCGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:46873983 original size:100 final size:100
Alignment explanation
Indices: 46873810--46875038 Score: 1540
Period size: 100 Copynumber: 12.4 Consensus size: 100
46873800 AAACCATAGT
* *
46873810 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAGCAGG
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
*
46873875 TTGAAGCTACGACGGCGAATCTCACTTCCCTGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
** * * *
46873910 TTGCAATTTAAAAGATTGAAGCCACAACGTTGAATCTTACTTCCCAGGTGATGTAGCAGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* *
46873975 TTGAAGCTACGACGGTGAATCTCACTTCCCCAACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * *
46874010 TTGCAATTTAAAAGATTGAAGCCATAAC-GCTGAATCTTACTTCCTAGGCGATGTAGCGGAACAG
1 TTGCAATTTAAAAGATTGAAGCCACAACGGC-GAATCTTACTTCCCAGGCGATGCAGCGGAACAG
*
46874074 ATTGAAGCTACGACGGCGAATCTCACTTCCGCGACA
65 ATTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * *
46874110 TTGCAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTGGAATAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* **
46874175 TTGAAGCTACGACGGTGAATCTCACTTCCGTGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * *
46874210 TTGCAATTCAAAAGAGTGAAGCCACAACAGCGAATCTTACTTCCCAGGCGATGCAGCAGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* * * *
46874275 TTTAAGCGACGACGGTGAATCTCACTTCCGCGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * *
46874310 TTGCAATTCAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAACGGAACATA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* *
46874375 TTGAAGCTACAACGGCGAATCTCACTTCCTCGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * * *
46874410 TTGCAGTTTAAAAGATTTAAGCCACAACAGCGAATCTTACTTCCCAGGCGATGTAGCGGAACAAA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* *
46874475 TTGAAGCTACGACGGTGAATCTCATTTCCCCGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * *
46874510 TTGCAA-TTAAAAGATTGAAGCCACAATGGTGAATCTTACTTTCCAGGCGGTGCAGCGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* * ***
46874574 TTGAAGCTACAACGACGAATCTTGTTTCCCCGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * * *** * *
46874609 TTGTAATTAAAAAGATTGAAGCTACAATGGCGAATCTTACTTTTTAGGC-AGTACAGCGAAACAG
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGA-TGCAGCGGAACAG
* **
46874673 ATTGAAGCTATGACGGCGAATCTTGCTTCCCCGACA
65 ATTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
** * ** * * *
46874709 TTGCAA-TTAAAAGATTGGGGCCAAAACAACGAATCTTACTT-CCAGGCGGTGTAGCGAAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* ** *
46874772 TTGAAGCTACGACGGTGAATCTTGCTTACCCGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * ** * *
46874807 TTACAA-TTAAAAGATTGAGGCCACAACAACGAATCTTACTT-CCAGGCGGTGCAGTGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* ** *
46874870 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGGCA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
* * * *
46874905 TTGTAA-TTAAAAGATTGAGGCCACAACGGCGAATCTTACTT-CCAGGCGGTGCAGCGAAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
** * *
46874968 TTGAAGCTACGACGGCGAATCTTGCTTTCTCGACA
66 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
46875003 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATC
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATC
46875039 ACGCTTCCCC
Statistics
Matches: 997, Mismatches: 126, Indels: 13
0.88 0.11 0.01
Matches are distributed among these distances:
98 229 0.23
99 140 0.14
100 627 0.63
101 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (100 bp):
TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
Found at i:46874594 original size:50 final size:50
Alignment explanation
Indices: 46873819--46875140 Score: 563
Period size: 50 Copynumber: 26.6 Consensus size: 50
46873809 TTTGCAATTT
* * *
46873819 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGA-TGCAGCGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGC-ATTGCAGCTG
** * * * * * * ** *
46873869 AGCAGGTTGAAGCTACGACGGCGAATCTCACTTCCCTGACATTGCAATTT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* ** * * * *
46873919 AAAAGATTGAAGCCACAACGTTGAATCTTACTTCCCAGGTGA-TGTAGCAG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGG-CATTGCAGCTG
* * * * * * ** *
46873969 AACAGATTGAAGCTACGACGGTGAATCTCACTTCCCCA-ACATTGCAATTT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTT-TCCAGGCATTGCAGCTG
* * * *
46874019 AAAAGATTGAAGCCATAAC-GCTGAATCTTAC-TTCCTAGGCGA-TGTAGCGG
1 AAAAGATTGAAGCTACAACGGC-GAATCTTACTTTCC-AGGC-ATTGCAGCTG
* * * ** *
46874069 AACAGATTGAAGCTACGACGGCGAATCTCAC-TTCC-GCGACATTGCAATTC
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAG-G-CATTGCAGCTG
* * *
46874119 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGA-TGCAG-TGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGC-ATTGCAGCT-G
* * * * ** *
46874169 AATAGATTGAAGCTACGACGGTGAATCTCAC-TTCC-GTGACATTGCAATTC
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAG-G-CATTGCAGCTG
* * * * *
46874219 AAAAGAGTGAAGCCACAACAGCGAATCTTACTTCCCAGGCGA-TGCAGCAG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGC-ATTGCAGCTG
* * * * * * ** *
46874269 AACAGATTTAAGCGACGACGGTGAATCTCAC-TTCC-GCGACATTGCAATTC
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAG-G-CATTGCAGCTG
* * * * *
46874319 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCAGGCGA-TGCAACGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGC-ATTGCAGCTG
* * * * * * *
46874369 AACATATTGAAGCTACAACGGCGAATCTCAC-TTCCTCGACATTGCAGTTT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCC-AGGCATTGCAGCTG
* * * * * *
46874419 AAAAGATTTAAGCCACAACAGCGAATCTTACTTCCCAGGCGA-TGTAGCGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGC-ATTGCAGCTG
* * * * * * *
46874469 AACAA-ATTGAAGCTACGACGGTGAATCTCA-TTTCCCCGACATTGCA-ATT
1 AA-AAGATTGAAGCTACAACGGCGAATCTTACTTT-CCAGGCATTGCAGCTG
* * * ** *
46874518 AAAAGATTGAAGCCACAATGGTGAATCTTACTTTCCAGGCGGTGCAGCGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* * * * * * ** *
46874568 AACAGATTGAAGCTACAACGACGAATCTT-GTTTCCCCGACATTGTAATTA
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTT-CCAGGCATTGCAGCTG
* ** * *
46874618 AAAAGATTGAAGCTACAATGGCGAATCTTACTTTTTAGGCAGTACAGC-G
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
** * * * * * *
46874667 AAACAGATTGAAGCTATGACGGCGAATCTTGCTTCCCCGACATTGCA-ATT
1 AAA-AGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
** * * ** ** *
46874717 AAAAGATTGGGGCCAAAACAACGAATCTTAC-TTCCAGGCGGTGTAGC-G
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* * * * * * * * *
46874765 AAACAGATTGAAGCTACGACGGTGAATCTTGCTTACCCGACATTACA-ATT
1 AAA-AGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* * ** **
46874815 AAAAGATTGAGGCCACAACAACGAATCTTAC-TTCCAGGCGGTGCAG-TGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCT-G
* * * * * * *
46874864 AACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGGCATTGTA-ATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* * **
46874913 AAAAGATTGAGGCCACAACGGCGAATCTTAC-TTCCAGGCGGTGCAGC-G
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* * * ** *
46874961 AAACAGATTGAAGCTACGACGGCGAATCTTGCTTTCTC-GACATTGCAATTT
1 AAA-AGATTGAAGCTACAACGGCGAATCTTACTTTC-CAGGCATTGCAGCTG
* *** * * * * * *
46875012 AAAAGATTGAAGCCACAACGGCGAATCACGCTTCCCCGACATTACA-ATT
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
* * * * **
46875061 AAAAGATTGAGGCCACAATGGCGAATCTTACCTTCCCAGGCGGTGCAG-TGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTA-CTTTCCAGGCATTGCAGCT-G
* *
46875112 AATAGATTGAAGCTACAGCGGCGAATCTT
1 AAAAGATTGAAGCTACAACGGCGAATCTT
46875141 CCTTCCTCGA
Statistics
Matches: 905, Mismatches: 307, Indels: 119
0.68 0.23 0.09
Matches are distributed among these distances:
48 39 0.04
49 226 0.25
50 576 0.64
51 61 0.07
52 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (50 bp):
AAAAGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCATTGCAGCTG
Found at i:46876428 original size:26 final size:26
Alignment explanation
Indices: 46876385--46876436 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
46876375 TTGATTTGTA
* ** *
46876385 ATAATATATATATTATAAATATATAC
1 ATAATATATAAAAAATAAAAATATAC
46876411 ATAATATATAAAAAATAAAAATATAC
1 ATAATATATAAAAAATAAAAATATAC
46876437 CTTTTCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
ATAATATATAAAAAATAAAAATATAC
Found at i:46877216 original size:21 final size:19
Alignment explanation
Indices: 46877192--46877245 Score: 74
Period size: 18 Copynumber: 2.7 Consensus size: 19
46877182 TAACTATTTA
46877192 TATATATATATATCATCTTAT
1 TATATATAT-TAT-ATCTTAT
46877213 TATATAT-TTATATCTTAT
1 TATATATATTATATCTTAT
46877231 TATATATATCTATAT
1 TATATATAT-TATAT
46877246 ATCTCTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 14 0.45
19 4 0.13
20 6 0.19
21 7 0.23
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATATATTATATCTTAT
Found at i:46877229 original size:18 final size:19
Alignment explanation
Indices: 46877189--46877239 Score: 77
Period size: 18 Copynumber: 2.7 Consensus size: 19
46877179 TAATAACTAT
46877189 TTATATATATATATATCATC
1 TTAT-TATATATATATCATC
*
46877209 TTATTATATATTTAT-ATC
1 TTATTATATATATATCATC
46877227 TTATTATATATAT
1 TTATTATATATAT
46877240 CTATATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 15 0.52
19 10 0.34
20 4 0.14
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATTATATATATATCATC
Found at i:46877416 original size:29 final size:30
Alignment explanation
Indices: 46877365--46877421 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
46877355 TCTATTATAT
*
46877365 ATATACATACTTACACTGTTTTATTTTACG
1 ATATACATACTTACACTCTTTTATTTTACG
*
46877395 ATATACATACTTATA-TCTTTTATTTTA
1 ATATACATACTTACACTCTTTTATTTTA
46877422 TGTAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.32, C:0.14, G:0.04, T:0.51
Consensus pattern (30 bp):
ATATACATACTTACACTCTTTTATTTTACG
Found at i:46883996 original size:36 final size:37
Alignment explanation
Indices: 46883913--46884003 Score: 114
Period size: 36 Copynumber: 2.5 Consensus size: 37
46883903 TCTAATGGAG
*
46883913 GACATGGCTTTT-AAGCTACACATAGAACAAATGAAAA
1 GACATGCCTTTTCAA-CTACACATAGAACAAATGAAAA
** * *
46883950 GACATGCCTTTTCAACTACACAT-GGTCAAGTGAAGA
1 GACATGCCTTTTCAACTACACATAGAACAAATGAAAA
46883986 GACATGCCTTTTCAACTA
1 GACATGCCTTTTCAACTA
46884004 TACACCATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
36 27 0.56
37 19 0.40
38 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.25
Consensus pattern (37 bp):
GACATGCCTTTTCAACTACACATAGAACAAATGAAAA
Found at i:46885855 original size:98 final size:98
Alignment explanation
Indices: 46885734--46885931 Score: 333
Period size: 98 Copynumber: 2.0 Consensus size: 98
46885724 AAAAACCCTA
* *
46885734 AGGTAAGAAATTGTTACCAACATTAACAACGAAAAGGAAAAGAAAACTAGGTTTAGCAGCCGCAT
1 AGGTAAGAAAGTGTTACCAACATTAACAACAAAAAGGAAAAGAAAACTAGGTTTAGCAGCCGCAT
*
46885799 TTTTTTCAAAAAAAAACTCTTTGAAACATTCAG
66 TTTTTTCAAAAAAAAACTCTCTGAAACATTCAG
* * *
46885832 AGGTAAGAGAGTGTTACCGACATTAACAACAAAAAGGAAAAGAAAACTAGGTTTAGTAGCCGCAT
1 AGGTAAGAAAGTGTTACCAACATTAACAACAAAAAGGAAAAGAAAACTAGGTTTAGCAGCCGCAT
*
46885897 TTTTTTCGAAAAAAAACTCTCTGAAACATTCAG
66 TTTTTTCAAAAAAAAACTCTCTGAAACATTCAG
46885930 AG
1 AG
46885932 AGAGTTTTTG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (98 bp):
AGGTAAGAAAGTGTTACCAACATTAACAACAAAAAGGAAAAGAAAACTAGGTTTAGCAGCCGCAT
TTTTTTCAAAAAAAAACTCTCTGAAACATTCAG
Found at i:46891495 original size:22 final size:21
Alignment explanation
Indices: 46891465--46891506 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
46891455 TCTCCCAATG
46891465 ATACAGTTATGCCAAGTATGT
1 ATACAGTTATGCCAAGTATGT
46891486 ATACAAGTTATGCCAAGTATG
1 ATAC-AGTTATGCCAAGTATG
46891507 CTTACCTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (21 bp):
ATACAGTTATGCCAAGTATGT
Found at i:46894294 original size:27 final size:27
Alignment explanation
Indices: 46894225--46894298 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
46894215 TTCTCATCCT
* *
46894225 ATTTTACCTCTAGT-TAATTTTTGATG
1 ATTTTACCCCTAGTAAAATTTTTGATG
* *
46894251 ATTTTACCCC-CGATAAAATTTTTTATG
1 ATTTTACCCCTAG-TAAAATTTTTGATG
46894278 ATTTTACCCCTAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
46894299 CAAGATAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 10 0.25
27 28 0.70
28 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.47
Consensus pattern (27 bp):
ATTTTACCCCTAGTAAAATTTTTGATG
Found at i:46896500 original size:27 final size:27
Alignment explanation
Indices: 46896470--46896526 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
46896460 TGTCATTGAG
46896470 TTAGTATTAAAGTTTCGTTAGAAAATT
1 TTAGTATTAAAGTTTCGTTAGAAAATT
46896497 TTAGTATTAAAGTTTCGTTAGAAAATT
1 TTAGTATTAAAGTTTCGTTAGAAAATT
46896524 TTA
1 TTA
46896527 ACGTTTTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.46
Consensus pattern (27 bp):
TTAGTATTAAAGTTTCGTTAGAAAATT
Found at i:46897777 original size:42 final size:42
Alignment explanation
Indices: 46897704--46897830 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 42
46897694 TCTTACGAGC
* * * *
46897704 TTCAGTT-AACTCATATGAGTTTCAGTTTAACCCTAATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
* *
46897745 TTCAGTTCAGCTCTT-TCGAGCTTCATTTTAACCCTTATGAGT
1 TTCAGTTCAGCTCTTAT-GAGCTTCAGTTTAACCCTTATGGGT
* * *
46897787 TTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
46897829 TT
1 TT
46897831 TCGTTTAGCA
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 8 0.11
42 63 0.88
43 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.41
Consensus pattern (42 bp):
TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
Found at i:46897804 original size:21 final size:21
Alignment explanation
Indices: 46897774--46897835 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
46897764 GCTTCATTTT
46897774 AACCCTTATGAGTTTCCGTTC
1 AACCCTTATGAGTTTCCGTTC
* * *
46897795 AGCTCTTATGAGCTTCCGTTC
1 AACCCTTATGAGTTTCCGTTC
* *
46897816 AACCCTTATGGGTTTTCGTT
1 AACCCTTATGAGTTTCCGTT
46897836 TAGCACTTGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
AACCCTTATGAGTTTCCGTTC
Found at i:46897816 original size:63 final size:62
Alignment explanation
Indices: 46897683--46897816 Score: 142
Period size: 63 Copynumber: 2.1 Consensus size: 62
46897673 CATGTTTACT
* * * * *
46897683 TTCCGTTTAGCTCTTACGAGCTTCAGTTAACTCATATGAGTTTCAGTTTAACCCTAATGGGT
1 TTCCGTTCAGCTCTTACGAGCTTCAGTTAACCCATATGAGTTTCAGTTCAACCCTAATGAGC
* * * * * * * *
46897745 TTCAGTTCAGCTCTTTCGAGCTTCATTTTAACCCTTATGAGTTTCCGTTCAGCTCTTATGAGC
1 TTCCGTTCAGCTCTTACGAGCTTCA-GTTAACCCATATGAGTTTCAGTTCAACCCTAATGAGC
46897808 TTCCGTTCA
1 TTCCGTTCA
46897817 ACCCTTATGG
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
62 22 0.39
63 35 0.61
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.40
Consensus pattern (62 bp):
TTCCGTTCAGCTCTTACGAGCTTCAGTTAACCCATATGAGTTTCAGTTCAACCCTAATGAGC
Found at i:46914910 original size:22 final size:22
Alignment explanation
Indices: 46914884--46914925 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
46914874 AATACCTGGT
*
46914884 AAAAGGTATCAATACTTTTTTG
1 AAAAGGTATCAATACATTTTTG
*
46914906 AAAAGGTATCGATACATTTT
1 AAAAGGTATCAATACATTTT
46914926 GTAATTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (22 bp):
AAAAGGTATCAATACATTTTTG
Found at i:46915160 original size:23 final size:22
Alignment explanation
Indices: 46915118--46915162 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
46915108 TTTTTTCAAC
46915118 TTTAACTTTTATTCAGAAACAT
1 TTTAACTTTTATTCAGAAACAT
*
46915140 TTTAATTTATTATATCA-AAACAT
1 TTTAACTT-TTAT-TCAGAAACAT
46915163 ATTATCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 10 0.50
24 3 0.15
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (22 bp):
TTTAACTTTTATTCAGAAACAT
Done.