Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 157 of 228
Found at i:47130925 original size:13 final size:13
Alignment explanation
Indices: 47130907--47130932 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47130897 GAACCTGTTT
47130907 GAACAACTTATAC
1 GAACAACTTATAC
47130920 GAACAACTTATAC
1 GAACAACTTATAC
47130933 CGAGATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
GAACAACTTATAC
Found at i:47133158 original size:3 final size:3
Alignment explanation
Indices: 47133150--47133175 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
47133140 CATTTAAATA
47133150 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
47133176 AAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:47150282 original size:21 final size:21
Alignment explanation
Indices: 47150253--47150309 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
47150243 ATTTTCGAGG
47150253 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
47150274 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
47150295 ATATACAATCTTAGA
1 ATATACAATCTTAGA
47150310 AGATAAGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:47155024 original size:24 final size:24
Alignment explanation
Indices: 47154997--47155042 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
47154987 AGAACAATCC
* *
47154997 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
47155021 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
47155043 AAAAGATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:47158839 original size:44 final size:44
Alignment explanation
Indices: 47158791--47159117 Score: 125
Period size: 44 Copynumber: 7.4 Consensus size: 44
47158781 GAGTAGGCTG
*
47158791 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
1 AAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * * **
47158835 AAGA-TGAAAAATCTTATCTTTCC-AAG-A-TAGTGAGAAGAAGATTT
1 AAGATTG-TAAATCTTATC-TCCCTAAGCAGTAGTG-G-AGCAGATCA
*** ** * * * * * * *
47158879 AAGACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAG-GCTG
1 AAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-A
* *
47158923 AAGATTGTAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCA
1 AAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * **
47158967 AAGA-TGACAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTT
1 AAGATTG-TAAATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCA
*** ** * * * * * * *
47159011 AAGACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAG-CCTG
1 AAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-A
* * *
47159055 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGTAGCCGATCA
1 AAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* *
47159099 AAGATGGCAAATCTTATCT
1 AAGATTGTAAATCTTATCT
47159118 TTCCAAGATA
Statistics
Matches: 191, Mismatches: 72, Indels: 40
0.63 0.24 0.13
Matches are distributed among these distances:
42 9 0.05
43 15 0.08
44 150 0.79
45 12 0.06
46 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
AAGATTGTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
Found at i:47158987 original size:132 final size:132
Alignment explanation
Indices: 47158750--47159405 Score: 1060
Period size: 132 Copynumber: 5.0 Consensus size: 132
47158740 AACCGGTGAA
* *
47158750 ACACTAAGCCTTGTCTCCCTGAGTACCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
1 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
* * *
47158815 AGCAGTAGTGGAGCAGATCAAAGATGAAAAATCTTATCTTTCCAAGATAGTGAGAAGAAGATTTA
66 AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
47158880 AG
131 AG
*
47158882 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCTTA
1 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
47158947 AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
66 AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
47159012 AG
131 AG
*
47159014 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGCCTGAAGATTGTAGATCTTATCTCCCTA
1 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
* * * *
47159079 AGCAGTAGTGTAGCCGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAACCAGATTTA
66 AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
47159144 AG
131 AG
* * * * * * * **
47159146 CCACCAAGCATTGTCTCCCTGAGCAGCAACGGAATAGGTTGAAAATTGTAGATCTTATCTCTTTA
1 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
* *
47159211 AGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
66 AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
47159276 AG
131 AG
* * * *
47159278 CCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTA
1 ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
* *
47159343 AGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
66 AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
47159406 AAAGCCAATA
Statistics
Matches: 491, Mismatches: 33, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 491 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (132 bp):
ACACTAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTA
AGCAGTAGTGGAGCAGATCAAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
AG
Found at i:47159515 original size:40 final size:40
Alignment explanation
Indices: 47159463--47159603 Score: 149
Period size: 40 Copynumber: 3.4 Consensus size: 40
47159453 ACTTTGGATT
*
47159463 TTATCTCTCTGAAGTTGTAGAGAGCAAATCGCATCTAGTC
1 TTATCTCCCTGAAGTTGTAGAGAGCAAATCGCATCTAGTC
* * * * * * * *
47159503 TTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTG
1 TTATCTCCCTGAAGTTGTAG-AGAGCA-AAT-CG-CATCTAGTC
47159547 TTATC-CTCCTGAAGTTGTAGAGAGCAAATCGCATCTAGTC
1 TTATCTC-CCTGAAGTTGTAGAGAGCAAATCGCATCTAGTC
47159587 TTATCTCCCTGAAGTTG
1 TTATCTCCCTGAAGTTG
47159604 CAGTGGAGCA
Statistics
Matches: 78, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
40 38 0.49
41 7 0.09
42 4 0.05
43 7 0.09
44 22 0.28
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (40 bp):
TTATCTCCCTGAAGTTGTAGAGAGCAAATCGCATCTAGTC
Found at i:47159516 original size:84 final size:83
Alignment explanation
Indices: 47159420--47159647 Score: 318
Period size: 84 Copynumber: 2.7 Consensus size: 83
47159410 CCAATAATCC
* * ** *
47159420 TATCTCCCTGAAGTTACAGTGGAGCAGATTAA-AA-CTTTGGATTTTAT-CTCTCTGAAGTTGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC--AAG-TGTTATCCTC-CTGAAGTTGTA
47159482 GAGAGCAAATCGCATCTAGTCT
62 GAGAGCAAATCGCATCTAGTCT
*
47159504 TATCTCCCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTGTTATCCTCCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTGTTATCCTCCTGAAGTTGTAGAG
47159569 AGCAAATCGCATCTAGTCT
65 AGCAAATCGCATCTAGTCT
*
47159588 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTGTTATCCTCCTGAAGTTG
47159648 CAGTGAGGCA
Statistics
Matches: 132, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
84 125 0.95
85 4 0.03
86 2 0.02
87 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (83 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTGTTATCCTCCTGAAGTTGTAGAGA
GCAAATCGCATCTAGTCT
Found at i:47159558 original size:44 final size:41
Alignment explanation
Indices: 47159499--47160097 Score: 245
Period size: 44 Copynumber: 13.9 Consensus size: 41
47159489 AATCGCATCT
47159499 AGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCA
1 AGTCTTATCT-CCTGAAGTTGCAG-GGAGCAGACTAAG-AAGCA
* * * * * * * *
47159543 AGTGTTATCCTCCTGAAGTTGTAGAGAGCA-AAT-CGCATCT
1 AGTCTTAT-CTCCTGAAGTTGCAGGGAGCAGACTAAGAAGCA
47159583 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCT-CCTGAAGTTGCAG-GGAGCAGACTAAG-AAGCA
* *
47159627 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTCA
1 AGTCTTAT-CTCCTGAAGTTGCAGGGA-GCAGACT-AAGAAG-CA
* *
47159672 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGA-TTA-AAGTCGA
1 AGTCTTATCTCC-TGAAGTTGCAG-GGAGCAGACTAAGAAG-C-A
* * * * * * * *
47159715 TAATCCTATCTTCTTGAAGTTGCAGTTGAGCGGATTAA-AACCTT
1 -AGTCTTATC-TCCTGAAGTTGCAG-GGAGCAGACTAAGAAGC-A
* * * * * *
47159759 GGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA-T-CGCATCT
1 AG-TCTTATCTC-CTGAAGTTGCAGGGAGCAGACTAAGAAGCA
* *
47159800 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTCAGCAAGCA
1 AGTCTTATCT-CCTGAAGTTGCAG-GGAGCAGACTAAG-AAGCA
* * * *
47159844 AGTCTTATCCTCCTGAAGTTGTAGTGAGGTAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCAGGGA-GCAGACT-AAGA-AGCA
* * * *
47159889 AATCTTATCTCCCTGACGTTGTAGTGGAGCAGA-TTAG-AGTCGA
1 AGTCTTATCT-CCTGAAGTTGCAG-GGAGCAGACTAAGAAG-C-A
* * * * *
47159932 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGA-TCAA-AACCTT
1 -AGTCTTATCT-CCTGAAGTTGCAG-GGAGCAGACT-AAGAAGC-A
* * * * * *
47159976 GGATCTTATCTCTCTGAAGTTGCAGAGAACAGA-T-CG-CGTCT
1 AG-TCTTATCTC-CTGAAGTTGCAGGGAGCAGACTAAGAAG-CA
* *
47160017 AGTCTTATCTCCCTGAAGTTTCAGTGGAGCAGACTAAGTAAACA
1 AGTCTTATCT-CCTGAAGTTGCAG-GGAGCAGACTAAG-AAGCA
*
47160061 AGTCTTATCCTCCTGAAGTTGCAGTGAGACAGACTAA
1 AGTCTTAT-CTCCTGAAGTTGCAGGGAG-CAGACTAA
47160098 ATAAACAAAT
Statistics
Matches: 425, Mismatches: 83, Indels: 94
0.71 0.14 0.16
Matches are distributed among these distances:
39 2 0.00
40 60 0.14
41 25 0.06
42 15 0.04
43 35 0.08
44 212 0.50
45 72 0.17
46 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (41 bp):
AGTCTTATCTCCTGAAGTTGCAGGGAGCAGACTAAGAAGCA
Found at i:47159893 original size:217 final size:217
Alignment explanation
Indices: 47159547--47160095 Score: 893
Period size: 217 Copynumber: 2.5 Consensus size: 217
47159537 TAAGCAAGTG
* *
47159547 TTATC-CTCCTGAAGTTGTAGAGAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
1 TTATCTCT-CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
*
47159611 GCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTCAAATC
65 GCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATC
* * *
47159676 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTTCTTGAAGTTGCAGT
130 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGT
* *
47159741 TGAGCGGATTAAAACCTTGGATC
195 GGAGCGGATCAAAACCTTGGATC
47159764 TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
1 TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * *
47159829 TAGACTCAGCAAGCAAGTCTTATCCTCCTGAAGTTGTAGTGAGGTAGACTGAAGATGGCAAATCT
66 CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCT
* * *
47159894 TATCTCCCTGACGTTGTAGTGGAGCAGATTAGAGTCGATAATCCTATCTCCCTGAAGTTGCAGTG
131 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGTG
47159959 GAGCGGATCAAAACCTTGGATC
196 GAGCGGATCAAAACCTTGGATC
* * *
47159981 TTATCTCTCTGAAGTTGCAGAGAACAGATCGCGTCTAGTCTTATCTCCCTGAAGTTTCAGTGGAG
1 TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* *
47160046 CAGACTAAGTAAACAAGTCTTATCCTCCTGAAGTTGCAGTGAGACAGACT
66 CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACT
47160096 AAATAAACAA
Statistics
Matches: 305, Mismatches: 26, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
217 303 0.99
218 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (217 bp):
TTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCT
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGTG
GAGCGGATCAAAACCTTGGATC
Found at i:47160067 original size:84 final size:85
Alignment explanation
Indices: 47159463--47160095 Score: 354
Period size: 84 Copynumber: 7.4 Consensus size: 85
47159453 ACTTTGGATT
* * * *
47159463 TTATCTCTCTGAAGTTGTAGAGAGCA-AATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGCGGA
1 TTATCTCTCTGAAGTTGCAGAGAGCAGACTCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
*
47159527 GCAGACTAAGTAAGCAAGTG
66 GCAGACTAAGTAAGCAAGTC
* * *
47159547 TTATC-CTCCTGAAGTTGTAGAGAGCA-AATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGG
1 TTATCTCT-CTGAAGTTGCAGAGAGCAGACTCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGG
47159610 AGCAGACTAAGTAAGCAAGTC
65 AGCAGACTAAGTAAGCAAGTC
* * * * * *
47159631 TTATC-CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGTCAAATCTTATCTCCTTGAAGTTGCA
1 TTATCTCT-CTGAAGTTGCAGAGA-GCAGACT--CG-CGTCTAGTCTTATCTCCCTGAAGTTGCA
* * *
47159695 GTGGAGCAGATTAAAGT-CG-ATAATC
61 GTGGAGCAGACT-AAGTAAGCA-AGTC
* * * * ** * * *
47159720 CTATCT-TCTTGAAGTTGCAGTTGAGCGGATTAAAACCT-TGGATCTTATCTCTCTGAAGTTGCA
1 TTATCTCTC-TGAAGTTGCAG-AGAGCAGACT--CGCGTCTAG-TCTTATCTCCCTGAAGTTGCA
* * * * *
47159783 G-AGAGCAGA-T-CG-CATCTAGTC
61 GTGGAGCAGACTAAGTAAGCAAGTC
* * * * *
47159804 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTCAGCAAG-CAAGTCTTATC-CTCCTGAAGTTGTA
1 TTATCTCTCTGAAGTTGCAG-AGAGCAGACTC-GC--GTCTAGTCTTATCTC-CCTGAAGTTGCA
* * *
47159867 GT-GAGGTAGACTGAAG-ATGGCAAATC
61 GTGGA-GCAGACT-AAGTA-AGCAAGTC
* * * * * * * * *
47159893 TTATCTCCCTGACGTTGTAGTGGAGCAGATTAGAGTCGATAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCTCTGAAGTTGCAG-AGAGCAGACTCGCGTC--TAGTCTTATCTCCCTGAAGTTGCAGT
* * **
47159958 GGAGCGGA-TCAA--AACCTTGGATC
63 GGAGCAGACT-AAGTAAGC-AAG-TC
* *
47159981 TTATCTCTCTGAAGTTGCAGAGAACAGA-TCGCGTCTAGTCTTATCTCCCTGAAGTTTCAGTGGA
1 TTATCTCTCTGAAGTTGCAGAGAGCAGACTCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
*
47160045 GCAGACTAAGTAAACAAGTC
66 GCAGACTAAGTAAGCAAGTC
*
47160065 TTATC-CTCCTGAAGTTGCAGTGAGACAGACT
1 TTATCTCT-CTGAAGTTGCAGAGAG-CAGACT
47160096 AAATAAACAA
Statistics
Matches: 424, Mismatches: 86, Indels: 76
0.72 0.15 0.13
Matches are distributed among these distances:
83 6 0.01
84 200 0.47
85 15 0.04
86 15 0.04
87 15 0.04
88 48 0.11
89 115 0.27
90 10 0.02
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (85 bp):
TTATCTCTCTGAAGTTGCAGAGAGCAGACTCGCGTCTAGTCTTATCTCCCTGAAGTTGCAGTGGA
GCAGACTAAGTAAGCAAGTC
Found at i:47160276 original size:44 final size:43
Alignment explanation
Indices: 47160190--47160276 Score: 97
Period size: 44 Copynumber: 2.0 Consensus size: 43
47160180 TTAAAAGTTA
* * * *
47160190 CGAGTCACCAATCCTATCTCTCTGATGTTGCGGTGGAGTGGAT
1 CGAGACACCAATCCTATCTCTCTGAAGGTGCAGTGGAGTGGAT
47160233 CGAGACACCAATTCCTATAC-CTCTGAAGGTGCAGTAGGA-TGGAT
1 CGAGACACCAA-TCCTAT-CTCTCTGAAGGTGCAGT-GGAGTGGAT
47160277 GTGGCTGCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
43 10 0.27
44 23 0.62
45 4 0.11
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (43 bp):
CGAGACACCAATCCTATCTCTCTGAAGGTGCAGTGGAGTGGAT
Found at i:47160471 original size:21 final size:21
Alignment explanation
Indices: 47160442--47160498 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
47160432 ATTTTCGAGG
47160442 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
47160463 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
47160484 ATATACAATATTAGA
1 ATATACAATCTTAGA
47160499 AAATGTGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.37
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:47160932 original size:14 final size:15
Alignment explanation
Indices: 47160903--47160931 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47160893 AATTTTTAGG
47160903 ATGTAATTATTTTTT
1 ATGTAATTATTTTTT
47160918 ATGTAATTATTTTT
1 ATGTAATTATTTTT
47160932 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (15 bp):
ATGTAATTATTTTTT
Found at i:47164464 original size:50 final size:49
Alignment explanation
Indices: 47164404--47164516 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 49
47164394 AAAGCCTGAG
* * * *
47164404 GTCTCGAGACAATGATCCTTTAAAGCAAACCTTAGCTTTGCTGTTGGCTA
1 GTCTCGAGACAAGGATCCCTTAAAGC-AACCTTAGCTTTGATGTAGGCTA
* * ** * *
47164454 GTCTCGAGACAAGGTTCCCTTGAAGCAATTTTAGCTTTGATGTAGGTTT
1 GTCTCGAGACAAGGATCCCTTAAAGCAACCTTAGCTTTGATGTAGGCTA
47164503 GTCTCGAGACAAGG
1 GTCTCGAGACAAGG
47164517 TTGGGAACCT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
49 31 0.58
50 22 0.42
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (49 bp):
GTCTCGAGACAAGGATCCCTTAAAGCAACCTTAGCTTTGATGTAGGCTA
Found at i:47172597 original size:13 final size:13
Alignment explanation
Indices: 47172579--47172603 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47172569 ATGTCCATTT
47172579 CAGATACAAATAA
1 CAGATACAAATAA
47172592 CAGATACAAATA
1 CAGATACAAATA
47172604 TGCAGATCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (13 bp):
CAGATACAAATAA
Found at i:47175769 original size:18 final size:18
Alignment explanation
Indices: 47175746--47175781 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
47175736 CGAAAAATAC
47175746 AGAAAAAATATGAAAAAA
1 AGAAAAAATATGAAAAAA
*
47175764 AGAAAAAATATTAAAAAA
1 AGAAAAAATATGAAAAAA
47175782 TTATGTGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (18 bp):
AGAAAAAATATGAAAAAA
Found at i:47180999 original size:20 final size:20
Alignment explanation
Indices: 47180974--47181011 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47180964 GTCTATTTAT
47180974 TTATTT-TTATATTGTTATTA
1 TTATTTGTTATA-TGTTATTA
47180994 TTATTTGTTATATGTTAT
1 TTATTTGTTATATGTTAT
47181012 CAAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (20 bp):
TTATTTGTTATATGTTATTA
Found at i:47187028 original size:21 final size:21
Alignment explanation
Indices: 47187004--47187043 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
47186994 CCCTAAGTCA
*
47187004 TAAAACATAAACCTTAACCTT
1 TAAAACATAAACCCTAACCTT
* *
47187025 TAAACCTTAAACCCTAACC
1 TAAAACATAAACCCTAACC
47187044 CCTAACCCTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAAACATAAACCCTAACCTT
Found at i:47187128 original size:14 final size:14
Alignment explanation
Indices: 47187109--47187162 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
47187099 AATAGTAACT
*
47187109 CCTAAACTTTAAAC
1 CCTAAACTATAAAC
*
47187123 CCTAAACTATATAC
1 CCTAAACTATAAAC
47187137 CCTAAA-TCATAAAC
1 CCTAAACT-ATAAAC
*
47187151 CTTAAACTATAA
1 CCTAAACTATAA
47187163 TGATAATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 1 0.03
14 32 0.94
15 1 0.03
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (14 bp):
CCTAAACTATAAAC
Found at i:47187529 original size:40 final size:40
Alignment explanation
Indices: 47187479--47187647 Score: 202
Period size: 40 Copynumber: 4.3 Consensus size: 40
47187469 CATTTTTGGT
* *
47187479 AAAGCACCGCTAAAGCTCGATCTATAGTGGCGTTTTTCAA
1 AAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAA
*
47187519 AAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAA
1 AAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAA
* * * * *
47187559 AAATCGCCGCTAATGCTTGATCTATAGCAGCATTTTTCAA
1 AAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAA
* * * *
47187599 AAATCG-CGCT--A-CTCGATTTATAGTGGCGTTTTTCGA
1 AAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAA
47187635 AAAGCGCCGCTAA
1 AAAGCGCCGCTAA
47187648 TGCTACTAAA
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
36 24 0.22
37 4 0.04
39 4 0.04
40 79 0.71
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (40 bp):
AAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAA
Found at i:47187644 original size:76 final size:79
Alignment explanation
Indices: 47187479--47187651 Score: 217
Period size: 76 Copynumber: 2.2 Consensus size: 79
47187469 CATTTTTGGT
* * ** *
47187479 AAAGCACCGCTAAAGCTCGATCTATAGTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTAT
1 AAAGCGCCGCTAATGCTCGATCTATAGCAGCATTTTTCAAAAAGCGCCGCTAA-GCTCGATCTAT
47187544 AGCGGCGTTTTTCAA
65 AGCGGCGTTTTTCAA
* * * *
47187559 AAATCGCCGCTAATGCTTGATCTATAGCAGCATTTTTCAAAAATCG-CGCT-A-CTCGATTTATA
1 AAAGCGCCGCTAATGCTCGATCTATAGCAGCATTTTTCAAAAAGCGCCGCTAAGCTCGATCTATA
* *
47187621 GTGGCGTTTTTCGA
66 GCGGCGTTTTTCAA
47187635 AAAGCGCCGCTAATGCT
1 AAAGCGCCGCTAATGCT
47187652 ACTAAAGCTC
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
76 38 0.47
78 1 0.01
79 4 0.05
80 38 0.47
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (79 bp):
AAAGCGCCGCTAATGCTCGATCTATAGCAGCATTTTTCAAAAAGCGCCGCTAAGCTCGATCTATA
GCGGCGTTTTTCAA
Found at i:47187802 original size:40 final size:40
Alignment explanation
Indices: 47187704--47187824 Score: 156
Period size: 39 Copynumber: 3.1 Consensus size: 40
47187694 TTGCAGCATA
* * *
47187704 TTTCAAGAAGCGCCGCTAATGGTCGACCTATAGCGGCGTT
1 TTTCAAAAAGCGCCGCTAATGATCGATCTATAGCGGCGTT
* *
47187744 TTT-AAAAAGCGCTGCTAATGATCGATCTATAGCGGTGTT
1 TTTCAAAAAGCGCCGCTAATGATCGATCTATAGCGGCGTT
* * *
47187783 TTTCAAAAAGCGCCGCTAATGCT-TATCTATAGCGGCATT
1 TTTCAAAAAGCGCCGCTAATGATCGATCTATAGCGGCGTT
47187822 TTT
1 TTT
47187825 TATCCAAACG
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 50 0.71
40 20 0.29
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTCAAAAAGCGCCGCTAATGATCGATCTATAGCGGCGTT
Found at i:47188792 original size:19 final size:19
Alignment explanation
Indices: 47188770--47188806 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47188760 CCAATGTCCT
47188770 CCACCGTAATCAAATTTGC
1 CCACCGTAATCAAATTTGC
*
47188789 CCACGGTAATCAAATTTG
1 CCACCGTAATCAAATTTG
47188807 TTATTAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (19 bp):
CCACCGTAATCAAATTTGC
Found at i:47198701 original size:109 final size:108
Alignment explanation
Indices: 47198507--47199044 Score: 807
Period size: 108 Copynumber: 5.0 Consensus size: 108
47198497 AAAATTCAAG
* * * * * *
47198507 AGGATATTTAGCAATTTGG-CTAAACGTGAAACCGAAACCCAGCACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
47198571 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAA-TTTTTGAAA
* *
47198616 AGGATATTCAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTACGGCACGTTCCTCGAA
1 AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
47198681 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
* * *
47198724 AGGATATTAAG-TCATTTGGTGGAACGAGAAGTCGAAACCCAGTACCTTAGGGCACGTTCGTCGA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
47198788 ATTTCCAAACGCAAAACATTACCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAA-TTTTTGAAA
*
47198833 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
47198898 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
*
47198941 AGGATATTAAG-TCATTTGGTCGAACGAGAAATCGAAATCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
47199005 ATTTCCAAACGCTACATATTGCCTTATTTTGAAATATTTT
65 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAA-ATTTT
47199045 CCTTTTTTTA
Statistics
Matches: 395, Mismatches: 25, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
107 12 0.03
108 197 0.50
109 179 0.45
110 7 0.02
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (108 bp):
AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
Found at i:47198889 original size:217 final size:217
Alignment explanation
Indices: 47198529--47199038 Score: 896
Period size: 217 Copynumber: 2.4 Consensus size: 217
47198519 AATTTGGCTA
* * *
47198529 AACGTGAAACCGAAACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
47198594 TTATTTTTGAAAAGTTTTTAAAAGGATATTCAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTCAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
47198659 ACCTTACGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
131 ACCTTACGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
*
47198724 AGGATATTAAGTCATTTGGTGG
196 AGGATATTAAGTCATTTGGTCG
* * *
47198746 AACGAGAAGTCGAAACCCAGTACCTTAGGGCACGTTCGTCGAATTTCCAAACGCAAAACATTACC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
*
47198811 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTCAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
*
47198876 ACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
131 ACCTTACGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
47198941 AGGATATTAAGTCATTTGGTCG
196 AGGATATTAAGTCATTTGGTCG
* * * *
47198963 AACGAGAAATCGAAATCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCTACATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
47199028 TTA-TTTTGAAA
66 TTATTTTTGAAA
47199039 TATTTTCCTT
Statistics
Matches: 277, Mismatches: 16, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
216 8 0.03
217 269 0.97
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (217 bp):
AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTTGAAAAGTTTTTAAAAGGATATTCAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
ACCTTACGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
AGGATATTAAGTCATTTGGTCG
Found at i:47199228 original size:20 final size:18
Alignment explanation
Indices: 47199205--47199249 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
47199195 ATAAATGAAC
47199205 ATAAAAATAAAGAAAATTAT
1 ATAAAAAT-AAGAAAA-TAT
* *
47199225 ATAAAAATCATAAAATAT
1 ATAAAAATAAGAAAATAT
47199243 ATAAAAA
1 ATAAAAA
47199250 AACGTATGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 5 0.22
20 8 0.35
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
ATAAAAATAAGAAAATAT
Found at i:47199533 original size:3 final size:3
Alignment explanation
Indices: 47199459--47199514 Score: 58
Period size: 3 Copynumber: 17.7 Consensus size: 3
47199449 TTAATATTAC
* * *
47199459 ATA ATA ATTA TTA ATGA ATA TATA ATG ATA ATA ATA ATA ATA ATA ATG
1 ATA ATA A-TA ATA AT-A ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
47199507 ATA ATA AT
1 ATA ATA AT
47199515 GGTAACGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
3 36 0.82
4 8 0.18
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:47201447 original size:170 final size:170
Alignment explanation
Indices: 47201142--47202163 Score: 1609
Period size: 170 Copynumber: 6.0 Consensus size: 170
47201132 TGGCTTCAAT
* *
47201142 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTCAATCCGCTCCACTG
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCC----TTT-AATCCGCTCCACTG
* ** *
47201207 TAA-CTTC-AGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGA
61 TAATC-TCAAG-GAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
* * * *
47201270 TCTGCAATTCTTCGGTCTGCTCCGCTGTAATCTCAGGGAGATAAGAC
124 TCTGCAATTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
* * * * * *
47201317 CTGACGCAATCTATTCTGCTGTAACTTCAGAGAGATAAGATCCTTTAATTCGCTCCACTGTAATC
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
47201382 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAA
66 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAA
47201447 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
131 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
47201487 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
*
47201552 TCAAGGAGATAGGATTACTATCTTTGATCTGCTTCGCTGTAATCTCAGGGAGATAAGATCTGCAA
66 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAA
47201617 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
131 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
* *
47201657 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCTGCTCCACTGTAATA
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
* *
47201722 TCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTGCAA
66 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAA
* * * * *
47201787 TTCTTCGGTCTGCTCCGCTGTAATCTCAAGGAGATAAGAC
131 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
* * * **
47201827 CTGACGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTAATTTGCTCCACTGTAATC
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
* *
47201892 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGTAA
66 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAA
47201957 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
131 TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
47201997 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
* * *
47202062 TC-AGAGAGATATGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGAA
66 TCAAG-GAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCA
* *
47202126 ATTCTTCAATCTGTTCCACTGTAATCTCAGAGAAATAA
130 ATTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAA
47202164 TACTTGTATA
Statistics
Matches: 788, Mismatches: 56, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
169 2 0.00
170 742 0.94
171 6 0.01
175 38 0.05
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (170 bp):
CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAA
TTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
Found at i:47202155 original size:46 final size:44
Alignment explanation
Indices: 47201150--47202163 Score: 220
Period size: 44 Copynumber: 23.7 Consensus size: 44
47201140 ATCTGATGTG
* * *
47201150 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTAT-TTCA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGAT--TAATATCTTCA
* * * *
47201194 ATCCGCTCCACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTCA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATTAATATCTTCA
* * * *
47201238 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGCAAT-TCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGAT-T--AATATCTTCA
* * * * * *
47201284 GTCTGCTCCGCTGTAATCTCAGGGAGATAAGACCT--GA-C-GCA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGA-TTAATATCTTCA
** ** * *
47201325 ATCTATTCTGCTGTAA-CTTCAGAGAGATAAG----AT-CCTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATTAATATCTTCA
* * **
47201364 AT-TCGCTCCACTGTAATCTCA-AGGAGATAGGATTACTATCTTTG
1 ATCT-GCTCCACTGTAATCTCAGA-GAGATAAGATTAATATCTTCA
* * *
47201408 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAAT-TCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGAT-T--AATATCTTCA
* * * * * * * *
47201454 ATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGAT-GCGATCC
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGA-TTAATATC-TTCA
* *
47201499 A-CT-CT--ACTGTAA-CTTCAGAGAGATAAG----AT-CCTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATTAATATCTTCA
* * * **
47201534 ATCCGCTCCACTGTAATCTCA-AGGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGA-GAGATAAGATTAATATCTTCA
* * * *
47201578 ATCTGCTTCGCTGTAATCTCAGGGAGATAAGATCTGCAAT-TCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGAT-T--AATATCTTCA
* * * * * * * *
47201624 ATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGAT-GCGATCC
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGA-TTAATATC-TTCA
* *
47201669 A-CT-CT--ACTGTAA-CTTCAGAGAGATAAG----AT-CCTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATTAATATCTTCA
* * * * **
47201704 ATCTGCTCCACTGTAATATCAGGGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATTAATATCTTCA
* * * *
47201748 ATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTGCAAT-TCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGAT-T--AATATCTTCA
* * * * * *
47201794 GTCTGCTCCGCTGTAATCTCA-AGGAGATAAGACCT--GA-C-GCG
1 ATCTGCTCCACTGTAATCTCAGA-GAGATAAGA-TTAATATCTTCA
* ** * *
47201835 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAG----AT-CCTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATTAATATCTTCA
* * * **
47201874 ATTTGCTCCACTGTAATCTCA-AGGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGA-GAGATAAGATTAATATCTTCA
* * * *
47201918 ATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGTAAT-TCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGA--T-TAATATCTTCA
* * * * * * * *
47201964 ATCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGAT-GCGATCC
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGA-TTAATATC-TTCA
* *
47202009 A-CT-CT--ACTGTAA-CTTCAGAGAGATAAG----AT-CCTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATTAATATCTTCA
* * * **
47202044 ATCCGCTCCACTGTAATCTCAGAGAGATATGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATTAATATCTTCA
* *
47202088 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGAA-ATTCTTCA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGA-TT-AATA-TCTTCA
* *
47202134 ATCTGTTCCACTGTAATCTCAGAGAAATAA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAA
47202164 TACTTGTATA
Statistics
Matches: 721, Mismatches: 156, Indels: 184
0.68 0.15 0.17
Matches are distributed among these distances:
35 6 0.01
36 13 0.02
37 6 0.01
38 6 0.01
39 97 0.13
40 9 0.01
41 105 0.15
42 4 0.01
43 10 0.01
44 232 0.32
45 19 0.03
46 203 0.28
47 11 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGTAATCTCAGAGAGATAAGATTAATATCTTCA
Found at i:47202163 original size:510 final size:512
Alignment explanation
Indices: 47201142--47202163 Score: 1782
Period size: 510 Copynumber: 2.0 Consensus size: 512
47201132 TGGCTTCAAT
* *
47201142 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTCAATCCGCTCCACTG
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCC--T-TTTCAATCCGCTCCACTG
47201207 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATC
63 TAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATC
* *
47201272 TGCAATTCTTCGGTCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGACGCAATCTATTCTGCT
128 TGCAATTCTTCGGTCTGCTCCGCTGTAATCTCAAGGAGATAAGACCTGACGCAATCTACTCTGCT
47201337 GTAACTTCAGAGAGATAAGATCCTTTAATTCGCTCCACTGTAATCTCAAGGAGATAGGATTACTA
193 GTAACTTCAGAGAGATAAGATCCTTTAATTCGCTCCACTGTAATCTCAAGGAGATAGGATTACTA
47201402 TCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGATCTGTTCCACTG
258 TCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGATCTGTTCCACTG
47201467 TAATCTCAGGGAAATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTT
323 TAATCTCAGGGAAATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTT
*
47201532 TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTTCGCTGTAATCT
388 TAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCT
* * *
47201597 CAGGGAGATAAGATCTGCAATTCTTCGATCTGTTCCACTGTAATCTCAGGGAAATAAGAC
453 CAGGGAGATAAGATCTGAAATTCTTCAATCTGTTCCACTGTAATCTCAGAGAAATAAGAC
*
47201657 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCC-TTT-AATCTGCTCCACTGTAA
1 CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTTCAATCCGCTCCACTGTAA
* * ** * *
47201720 -TATCAGGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTG
66 CT-TCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTG
*
47201784 CAATTCTTCGGTCTGCTCCGCTGTAATCTCAAGGAGATAAGACCTGACGCGATCTACTCTGCTGT
130 CAATTCTTCGGTCTGCTCCGCTGTAATCTCAAGGAGATAAGACCTGACGCAATCTACTCTGCTGT
*
47201849 AACTTCAGAGAGATAAGATCCTTTAATTTGCTCCACTGTAATCTCAAGGAGATAGGATTACTATC
195 AACTTCAGAGAGATAAGATCCTTTAATTCGCTCCACTGTAATCTCAAGGAGATAGGATTACTATC
* *
47201914 TTTGATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTGTAATTCTTCGATCTGTTCCACTGTA
260 TTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGATCTGTTCCACTGTA
47201979 ATCTCAGGGAAATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
325 ATCTCAGGGAAATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
*
47202044 ATCCGCTCCACTGTAATCTC-AGAGAGATATGATTACTATCTTTGATCTGCTCCGCTGTAATCTC
390 ATCCGCTCCACTGTAATCTCAAG-GAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTC
*
47202108 AGGGAGATAAGATTTGAAATTCTTCAATCTGTTCCACTGTAATCTCAGAGAAATAA
454 AGGGAGATAAGATCTGAAATTCTTCAATCTGTTCCACTGTAATCTCAGAGAAATAA
47202164 TACTTGTATA
Statistics
Matches: 484, Mismatches: 21, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
509 3 0.01
510 437 0.90
511 3 0.01
515 41 0.08
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (512 bp):
CTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTTCAATCCGCTCCACTGTAA
CTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGC
AATTCTTCGGTCTGCTCCGCTGTAATCTCAAGGAGATAAGACCTGACGCAATCTACTCTGCTGTA
ACTTCAGAGAGATAAGATCCTTTAATTCGCTCCACTGTAATCTCAAGGAGATAGGATTACTATCT
TTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGATCTGTTCCACTGTAA
TCTCAGGGAAATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAA
TCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATCTGAAATTCTTCAATCTGTTCCACTGTAATCTCAGAGAAATAAGAC
Found at i:47213799 original size:109 final size:108
Alignment explanation
Indices: 47213605--47214359 Score: 1110
Period size: 108 Copynumber: 7.0 Consensus size: 108
47213595 AAAATTCAAG
* * * * * *
47213605 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGA
1 AGGATATTAAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
47213669 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAA-TTTTTGAAA
* * *
47213714 AGGATATTCAGCTATTTGGTCGAACGGGAAATTGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* * *
47213779 TTTTCAAACGTAAAATATTGCCTTATTTTGGAAATTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
* *
47213822 AGGATATTAAG-TCATTTGGTGGAACGAGAAGTCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
47213886 ATTTCCAAACGCAAAACATTTCCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAA-TTTTTGAAA
*
47213931 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
47213996 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
* *
47214039 AGGATATTAAG-TCATTTGGTGGAACGAGAAGTCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
47214103 ATTTCCAAATGCAAAACATTGCCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAA-TTTTTGAAA
*
47214148 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
47214213 TTTCCAAACACAAAATATTGCCTTATTTTGAAAATTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
* *
47214256 AGGATATTAAG-TCATTTGGTCGAACGAGAAATTGAAACCTAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
47214320 ATTTCCAAACGCTACATATTGCCTTATTTTGAAATATTTT
65 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAA-ATTTT
47214360 CCTTTTTTTA
Statistics
Matches: 589, Mismatches: 43, Indels: 28
0.89 0.07 0.04
Matches are distributed among these distances:
107 18 0.03
108 287 0.49
109 271 0.46
110 13 0.02
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (108 bp):
AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
Found at i:47213980 original size:217 final size:217
Alignment explanation
Indices: 47213627--47214353 Score: 1267
Period size: 217 Copynumber: 3.4 Consensus size: 217
47213617 AATTTGGCTA
* * *
47213627 AACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
* * *
47213692 TTATTTTTGAAAAGTTTTTAAAAGGATATTCAGCTATTTGGTCGAACGGGAAATTGAAACCCAGT
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
* * *
47213757 ACCTTAGGGCACGTTCCTCGAATTTTCAAACGTAAAATATTGCCTTATTTTGGAAATTTTTGAAA
131 ACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
47213822 AGGATATTAAGTCATTTGGTGG
196 AGGATATTAAGTCATTTGGTGG
* *
47213844 AACGAGAAGTCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTTCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
47213909 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
47213974 ACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
131 ACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
47214039 AGGATATTAAGTCATTTGGTGG
196 AGGATATTAAGTCATTTGGTGG
* *
47214061 AACGAGAAGTCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAATGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
47214126 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
*
47214191 ACCTTAGGGCACGTTCCTCGAATTTCCAAACACAAAATATTGCCTTATTTTGAAAATTTTTGAAA
131 ACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
*
47214256 AGGATATTAAGTCATTTGGTCG
196 AGGATATTAAGTCATTTGGTGG
* * * * *
47214278 AACGAGAAATTGAAACCTAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCTACATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
47214343 TTA-TTTTGAAA
66 TTATTTTTGAAA
47214354 TATTTTCCTT
Statistics
Matches: 488, Mismatches: 22, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
216 8 0.02
217 480 0.98
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (217 bp):
AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGT
ACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
AGGATATTAAGTCATTTGGTGG
Found at i:47214543 original size:20 final size:18
Alignment explanation
Indices: 47214520--47214564 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
47214510 ATAAATGAAC
47214520 ATAAAAATAAAGAAAATTAT
1 ATAAAAAT-AAGAAAA-TAT
* *
47214540 ATAAAAATCATAAAATAT
1 ATAAAAATAAGAAAATAT
47214558 ATAAAAA
1 ATAAAAA
47214565 ACGTATGTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 5 0.22
20 8 0.35
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
ATAAAAATAAGAAAATAT
Found at i:47214811 original size:3 final size:3
Alignment explanation
Indices: 47214776--47214824 Score: 53
Period size: 3 Copynumber: 15.3 Consensus size: 3
47214766 TTAATATTAC
* *
47214776 ATA ATA ATTA TTA ATGA ATA TATA ATG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA A-TA ATA AT-A ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
47214824 A
1 A
47214825 AGTTAACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 31 0.79
4 8 0.21
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:47216332 original size:31 final size:31
Alignment explanation
Indices: 47216296--47216357 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
47216286 AGATAATTTT
47216296 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
47216327 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
47216358 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:47216666 original size:3 final size:3
Alignment explanation
Indices: 47216658--47216686 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
47216648 ATCTATCCTT
47216658 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
47216687 TAACTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:47218730 original size:11 final size:11
Alignment explanation
Indices: 47218698--47218740 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
47218688 TTAACTCCCT
47218698 TTTTTTAAATAA
1 TTTTTTAAAT-A
**
47218710 TTTTAAAAATA
1 TTTTTTAAATA
*
47218721 TTTTTTAAATT
1 TTTTTTAAATA
47218732 TTTTTTAAA
1 TTTTTTAAA
47218741 CCGTAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTTTAAATA
Found at i:47221278 original size:124 final size:125
Alignment explanation
Indices: 47221120--47221371 Score: 391
Period size: 124 Copynumber: 2.0 Consensus size: 125
47221110 CCCAAACATG
*
47221120 CTACTGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCACAAATTCTTCTTAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
47221185 TAGAAGCAATTTTATACTATTT-ACTCAAAAACGT-AAAAAAAAATTATTTCTTCCATGAC
66 TAGAAGCAATTTTATACTATTTGA-TCAAAAACGTCAAAAAAAAATTATTTCTTCCAGGAC
*
47221244 CTACTGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGT
1 CTACTGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * * ***
47221309 TAGAAGCGATTTTGTATTATTTGATCACAAACGTCAACTCAAAATTATTTCTTCCAGGAC
66 TAGAAGCAATTTTATACTATTTGATCAAAAACGTCAAAAAAAAATTATTTCTTCCAGGAC
47221369 CTA
1 CTA
47221372 AAAACCCTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
124 91 0.78
125 25 0.22
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCAATTTTATACTATTTGATCAAAAACGTCAAAAAAAAATTATTTCTTCCAGGAC
Found at i:47224637 original size:256 final size:255
Alignment explanation
Indices: 47224183--47224692 Score: 894
Period size: 256 Copynumber: 2.0 Consensus size: 255
47224173 AAACTATCAT
* *
47224183 TTCATATCTTTCAGTGATTTTTTACAATCTTTGGATTTTGCAGAGTTAGTGCTTGGAAAATCAAA
1 TTCATATCTTTCAGTGATTTTTTACAATATTTGGATTTTCCAGAGTTAGTGCTTGGAAAATCAAA
* *
47224248 GATAGAAATGGTAAGAAGTTTCTATGTTGGATCTGATGCCCTGAGTGTAGTATTTTTGTTTGTAA
66 GATAGAAATGGTAAGAAGTTTCTATGTTGGATCTAATGCCCTGAGTGTAGTATTTTCGTTTGTAA
*
47224313 ACTTGTAATTTTTTTGAATATATTGATTAATAAAATAATTCATGGATTACATTAATTATACTTTA
131 ACTTGTAATTTTTTTGAATAGATTGATTAATAAAATAATTCATGGATTACATTAATTATACTTTA
* * *
47224378 TATAATTGTCCTTATGTGGTTTTTGCATGCAAAGCAAAATAGAAGTAAATGTTGGCTTAC
196 TATAATTGTCCTCATGTGGTTTTTGCATGCAAAGCAAAATAGAAGCAAATATTGGCTTAC
*
47224438 TTCATATTTTTCAGTGATTTTTTACAATATTTGGATTTTCCAGAGTTAGTGCTTGGAAAATCAAA
1 TTCATATCTTTCAGTGATTTTTTACAATATTTGGATTTTCCAGAGTTAGTGCTTGGAAAATCAAA
* *
47224503 TATAGAAATGGTAAGAGGTTTCTAGTGTTGGATCTAATGCCCTGAGTGTAGTATTTTCGTTTGTA
66 GATAGAAATGGTAAGAAGTTTCTA-TGTTGGATCTAATGCCCTGAGTGTAGTATTTTCGTTTGTA
* *
47224568 AACTTGTAATTTTTTTGAATAGGTTGGTTAATAAAATAATTCATGGATTACATTAATTATACTTT
130 AACTTGTAATTTTTTTGAATAGATTGATTAATAAAATAATTCATGGATTACATTAATTATACTTT
47224633 ATATAATTGTCCTCATGTGGTTTTTGCATGCAAAGCAAAATAGAAGCAAATATTGGCTTA
195 ATATAATTGTCCTCATGTGGTTTTTGCATGCAAAGCAAAATAGAAGCAAATATTGGCTTA
47224693 TTGGTTGTCT
Statistics
Matches: 241, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
255 84 0.35
256 157 0.65
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.42
Consensus pattern (255 bp):
TTCATATCTTTCAGTGATTTTTTACAATATTTGGATTTTCCAGAGTTAGTGCTTGGAAAATCAAA
GATAGAAATGGTAAGAAGTTTCTATGTTGGATCTAATGCCCTGAGTGTAGTATTTTCGTTTGTAA
ACTTGTAATTTTTTTGAATAGATTGATTAATAAAATAATTCATGGATTACATTAATTATACTTTA
TATAATTGTCCTCATGTGGTTTTTGCATGCAAAGCAAAATAGAAGCAAATATTGGCTTAC
Found at i:47225916 original size:13 final size:13
Alignment explanation
Indices: 47225894--47225957 Score: 67
Period size: 13 Copynumber: 5.0 Consensus size: 13
47225884 CATTTCAAAC
47225894 ATAA-CATTTCAT
1 ATAACCATTTCAT
* *
47225906 GTAATCATTTCAT
1 ATAACCATTTCAT
**
47225919 ATAACCATTTTGT
1 ATAACCATTTCAT
47225932 ATAACCATTTCAT
1 ATAACCATTTCAT
* *
47225945 CTAAACATTTCAT
1 ATAACCATTTCAT
47225958 TTTATCATTT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
12 3 0.07
13 39 0.93
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (13 bp):
ATAACCATTTCAT
Found at i:47225966 original size:26 final size:26
Alignment explanation
Indices: 47225896--47225980 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 26
47225886 TTTCAAACAT
*
47225896 AACATTTCATGTAATCATTTCATATA
1 AACATTTCATATAATCATTTCATATA
* ** * *
47225922 ACCATTTTGTATAACCATTTCATCTA
1 AACATTTCATATAATCATTTCATATA
* * *
47225948 AACATTTCATTTTATCATTTCATTTA
1 AACATTTCATATAATCATTTCATATA
*
47225974 CACATTT
1 AACATTT
47225981 AGCACAGAAT
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTTCATATAATCATTTCATATA
Found at i:47225979 original size:13 final size:12
Alignment explanation
Indices: 47225895--47225980 Score: 55
Period size: 13 Copynumber: 6.7 Consensus size: 12
47225885 ATTTCAAACA
*
47225895 TAACATTTCATG
1 TAACATTTCATT
*
47225907 TAATCATTTCATA
1 TAA-CATTTCATT
** *
47225920 TAACCATTTTGTA
1 TAA-CATTTCATT
47225933 TAACCATTTCATCT
1 TAA-CATTTCAT-T
*
47225947 AAACATTTCATTT
1 TAACATTTCA-TT
*
47225960 TATCATTTCATT
1 TAACATTTCATT
47225972 TACACATTT
1 TA-ACATTT
47225981 AGCACAGAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
12 7 0.12
13 49 0.83
14 3 0.05
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (12 bp):
TAACATTTCATT
Found at i:47226204 original size:25 final size:25
Alignment explanation
Indices: 47226143--47226204 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 25
47226133 GGGAAAGATT
* *
47226143 CTCACACAAGCTGTAACTGTAATTG
1 CTCACACAAGCTATAACTGTAAATG
* ** **
47226168 CTCTCATGAGCTATATTTGTAAATG
1 CTCACACAAGCTATAACTGTAAATG
47226193 CTCACACAAGCT
1 CTCACACAAGCT
47226205 GTGAAATGGG
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (25 bp):
CTCACACAAGCTATAACTGTAAATG
Found at i:47227554 original size:14 final size:14
Alignment explanation
Indices: 47227537--47227568 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
47227527 TATGGACCAA
47227537 ATTTAAATAAAAAT
1 ATTTAAATAAAAAT
47227551 ATTT-AATAAAAAT
1 ATTTAAATAAAAAT
47227564 ATTTA
1 ATTTA
47227569 CGGGCTCTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTTAAATAAAAAT
Found at i:47234719 original size:25 final size:25
Alignment explanation
Indices: 47234691--47234738 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47234681 ATAGTCTATC
*
47234691 TATAGTAGTCTCAGCATATACTACA
1 TATAGCAGTCTCAGCATATACTACA
* *
47234716 TATAGCAGTTTCAGGATATACTA
1 TATAGCAGTCTCAGCATATACTA
47234739 TCAAAGAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (25 bp):
TATAGCAGTCTCAGCATATACTACA
Found at i:47240043 original size:21 final size:22
Alignment explanation
Indices: 47240002--47240044 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
47239992 GCTTGGAGCT
* *
47240002 ATTTTGACTTATTTTAAAAAAA
1 ATTTTGACTTAGTTGAAAAAAA
47240024 ATTTTGAC-TAGTTGAAAAAAA
1 ATTTTGACTTAGTTGAAAAAAA
47240045 TTCGTACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (22 bp):
ATTTTGACTTAGTTGAAAAAAA
Found at i:47256881 original size:43 final size:43
Alignment explanation
Indices: 47256649--47256878 Score: 257
Period size: 43 Copynumber: 5.3 Consensus size: 43
47256639 TATGAGAAAA
* * *
47256649 AAACGTCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATAAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCAC
* * * * * *
47256692 AAACACTGCTAAATAACATGACCTTTAGCGACGCTTTTTTCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCAC
* * * *
47256735 AAACGCCGCTAAAGATCGTGATCTTTAGCGGCACTTTAGAT-AC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTG-TCAC
* * * *
47256778 AAACGCCGCTAAAGATCGTGAGCTTTAGCGGCGCTTTAGCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCAC
* *
47256821 AAACGCCGCTAAAGAAT-ATGATCTTTAACGGCGCTTTTGTCAC
1 AAACGCCGCTAAAG-ATCATGACCTTTAGCGGCGCTTTTGTCAC
47256864 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
47256879 ATAAACCTTT
Statistics
Matches: 158, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 154 0.97
44 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTGTCAC
Found at i:47260111 original size:19 final size:19
Alignment explanation
Indices: 47260085--47260131 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
47260075 CTGAAACCAA
47260085 AATTTATAATAGGCATTCT
1 AATTTATAATAGGCATTCT
*
47260104 AGTTTATAATAGGCATTCT
1 AATTTATAATAGGCATTCT
47260123 AATTTATAA
1 AATTTATAA
47260132 CAGATTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (19 bp):
AATTTATAATAGGCATTCT
Found at i:47261544 original size:29 final size:29
Alignment explanation
Indices: 47261502--47261560 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
47261492 TGGAATAAAA
*
47261502 CGACACTGTTTTGCTGTGATAAAAAGGTG
1 CGACACTGTTTTGCTGTGATAAAAAAGTG
47261531 CGACACTGTTTTGCTGTGATAAAAAAGTG
1 CGACACTGTTTTGCTGTGATAAAAAAGTG
47261560 C
1 C
47261561 TATTTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (29 bp):
CGACACTGTTTTGCTGTGATAAAAAAGTG
Found at i:47262331 original size:89 final size:89
Alignment explanation
Indices: 47262230--47262394 Score: 242
Period size: 89 Copynumber: 1.9 Consensus size: 89
47262220 ACCCTAAACT
* * * *
47262230 CCTAACCACTAACCCTTAAACCCTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCC
1 CCTAACCACTAACCCCTAAACACTATTCAATATATAAATTAAAAAACACTAATCAATCTAAA-CC
47262295 -TAAACCCTAACCCAACCCCAAATC
65 ATAAACCCTAACCCAACCCCAAATC
* * * *
47262319 CCTAACCCCTAACCCCTAAACATTATTCAATATATAAATTAAAACACACTAATCAATTTAAACCA
1 CCTAACCACTAACCCCTAAACACTATTCAATATATAAATTAAAAAACACTAATCAATCTAAACCA
47262384 TAAACCCTAAC
66 TAAACCCTAAC
47262395 TAGACATCGG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
88 2 0.03
89 65 0.97
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.25
Consensus pattern (89 bp):
CCTAACCACTAACCCCTAAACACTATTCAATATATAAATTAAAAAACACTAATCAATCTAAACCA
TAAACCCTAACCCAACCCCAAATC
Found at i:47262886 original size:20 final size:19
Alignment explanation
Indices: 47262853--47262898 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
47262843 ATTGAATTTT
47262853 AATT-AATATAAATAAACA
1 AATTAAATATAAATAAACA
*
47262871 AATTAAATAGTAAATAGACA
1 AATTAAATA-TAAATAAACA
*
47262891 AATAAAAT
1 AATTAAAT
47262899 GTTTTTGCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 16 0.67
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (19 bp):
AATTAAATATAAATAAACA
Found at i:47262971 original size:41 final size:41
Alignment explanation
Indices: 47262926--47263168 Score: 312
Period size: 41 Copynumber: 5.9 Consensus size: 41
47262916 CAAAAAACCC
*
47262926 GAGCATTAGCGGCG-TTTTCCAAGAAACGCCGCTAAAGATCT
1 GAGCATTAGCGGCGCTTTTCTAA-AAACGCCGCTAAAGATCT
*
47262967 GAGCATTAGCGACGCTTTTCTAAAAACGCCGCTAAAGATCT
1 GAGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGATCT
* * *
47263008 GAGCATTAGCGACGCTTTTCCAAAAACACCGCTAAAGATCT
1 GAGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGATCT
* * *
47263049 GAGAATTAGCGGCACGTTTT-AAAAAACGCCGCTAAAGATCT
1 GAGCATTAGCGGCGC-TTTTCTAAAAACGCCGCTAAAGATCT
** *
47263090 GATAATTAGCGGCGCTTTT-TAAAAAACGCCGCTAAAGAACT
1 GAGCATTAGCGGCGCTTTTCT-AAAAACGCCGCTAAAGATCT
* *
47263131 GAGCATTAGTGGCGCTTTTCTTAAAATCGCCGCTAAAG
1 GAGCATTAGCGGCGCTTTTC-TAAAAACGCCGCTAAAG
47263169 CCCCGAAAGG
Statistics
Matches: 180, Mismatches: 17, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
40 4 0.02
41 149 0.83
42 26 0.14
43 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTTTCTAAAAACGCCGCTAAAGATCT
Found at i:47264167 original size:20 final size:20
Alignment explanation
Indices: 47264144--47264190 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
47264134 TTTTAAAATT
47264144 AAATATTATTGAAAAATATA
1 AAATATTATTGAAAAATATA
* * * *
47264164 AAATTTTTTTTAAAAATTTA
1 AAATATTATTGAAAAATATA
47264184 AAA-ATTA
1 AAATATTA
47264191 ATTAATTGTT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
AAATATTATTGAAAAATATA
Found at i:47266175 original size:5 final size:5
Alignment explanation
Indices: 47266159--47266198 Score: 57
Period size: 5 Copynumber: 8.4 Consensus size: 5
47266149 TGTATTAAGG
*
47266159 ATATA ATGTA ATATA ATATA ATATA ATATA A-A-A ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
47266199 TAAATTGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 27 0.87
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:47266196 original size:13 final size:14
Alignment explanation
Indices: 47266161--47266203 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
47266151 TATTAAGGAT
*
47266161 ATAATGTAATATAA
1 ATAATATAATATAA
47266175 TATAATATAATATAA
1 -ATAATATAATATAA
47266190 A-AATATAAT-TAA
1 ATAATATAATATAA
47266202 AT
1 AT
47266204 TGATAATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 4 0.15
13 8 0.31
14 1 0.04
15 13 0.50
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (14 bp):
ATAATATAATATAA
Found at i:47266357 original size:14 final size:14
Alignment explanation
Indices: 47266338--47266377 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
47266328 TTGATTGGCA
47266338 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
47266352 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
47266366 GGAAAATGTTTT
1 GTAAAATGTTTT
47266378 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:47266386 original size:20 final size:20
Alignment explanation
Indices: 47266361--47266400 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
47266351 CGTAAAATGA
*
47266361 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
* *
47266381 TTTCTGTAAGATGATTTACT
1 TTTCTGGAAAATGATTTACT
47266401 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:47266395 original size:34 final size:35
Alignment explanation
Indices: 47266346--47266412 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
47266336 CAGTAAAATG
*
47266346 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
* *
47266380 TTTTCTGTAAGATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
47266413 CTAGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:47266524 original size:20 final size:20
Alignment explanation
Indices: 47266499--47266537 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
47266489 GTTTTTACAT
47266499 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
47266519 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
47266538 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:47269980 original size:25 final size:26
Alignment explanation
Indices: 47269952--47270000 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
47269942 AGAAGAGAAG
*
47269952 ATGAAGAACAGAAAAAGAA-AAAGGA
1 ATGAAAAACAGAAAAAGAAGAAAGGA
* *
47269977 ATGAAAAACGGAAGAAGAAGAAAG
1 ATGAAAAACAGAAAAAGAAGAAAG
47270001 AGCCTTACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.65, C:0.04, G:0.27, T:0.04
Consensus pattern (26 bp):
ATGAAAAACAGAAAAAGAAGAAAGGA
Found at i:47270084 original size:18 final size:18
Alignment explanation
Indices: 47270061--47270098 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
47270051 TTTGCAATCC
47270061 AAGGGGAAGGGAAAAGGG
1 AAGGGGAAGGGAAAAGGG
*
47270079 AAGGGGAAGGGAAAGGGG
1 AAGGGGAAGGGAAAAGGG
47270097 AA
1 AA
47270099 AGGGTAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (18 bp):
AAGGGGAAGGGAAAAGGG
Found at i:47270111 original size:24 final size:24
Alignment explanation
Indices: 47270061--47270112 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
47270051 TTTGCAATCC
* **
47270061 AAGGGGAAGGGAAAAGGGAAGGGG
1 AAGGGAAAGGGAAAAGGGAAGAAG
* *
47270085 AAGGGAAAGGGGAAAGGGTAGAAG
1 AAGGGAAAGGGAAAAGGGAAGAAG
47270109 AAGG
1 AAGG
47270113 CATCATTTTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.54, T:0.02
Consensus pattern (24 bp):
AAGGGAAAGGGAAAAGGGAAGAAG
Found at i:47279009 original size:42 final size:43
Alignment explanation
Indices: 47278804--47279033 Score: 250
Period size: 43 Copynumber: 5.3 Consensus size: 43
47278794 ACGTCGCTAA
* * * *
47278804 CTTTTGCGGCGCTTACAGAAAAAAACGTCGCTAAAGGTCATGTT
1 CTTTAGCGGCGCTTA-GGAAAAAAACGCCGCTAAAAGTCATGTT
* *
47278848 CTTTAGCGGCGCTTAGGAAAAAGACGCCGCTAATTA-TCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAA-AAGTCATGTT
* ** *
47278891 CTTTAGCAGCGCTTAGGAAAAAAACATCGCT-AATGATCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAG-TCATGTT
* * *
47278934 CTTTAGCAGTGCTTAGGAAAAAAACGCCGCTAAAAGTAATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAGTCATGTT
* * *
47278977 CTATAGCGGCGCTT-GGTAAAAAACGCCGCTAAAAGTAATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAGTCATGTT
* *
47279019 TTTTAACGGCGCTTA
1 CTTTAGCGGCGCTTA
47279034 TTTCACAAAC
Statistics
Matches: 157, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
42 39 0.25
43 101 0.64
44 17 0.11
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAAGTCATGTT
Found at i:47279492 original size:21 final size:21
Alignment explanation
Indices: 47279466--47279505 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
47279456 TTCTTTTGAA
*
47279466 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
47279487 CCTCTGCTTCCCTCGCTGC
1 CCTCTGCTTCCCTCGCTGC
47279506 TGCCACTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.47, G:0.17, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:47285004 original size:9 final size:9
Alignment explanation
Indices: 47284955--47285289 Score: 211
Period size: 9 Copynumber: 39.8 Consensus size: 9
47284945 AATTGCATGG
47284955 GTAAGTTAT
1 GTAAGTTAT
47284964 GT-A-TTAT
1 GTAAGTTAT
*
47284971 GTAAGCTAT
1 GTAAGTTAT
*
47284980 GTAAGTTGT
1 GTAAGTTAT
47284989 GT-A-TTAT
1 GTAAGTTAT
47284996 GTAAGTTAT
1 GTAAGTTAT
47285005 -T-A-TTAT
1 GTAAGTTAT
47285011 GTAAGTTAT
1 GTAAGTTAT
*
47285020 GTAAGTAAT
1 GTAAGTTAT
47285029 GT-A-TTAT
1 GTAAGTTAT
*
47285036 GTAAGTTGT
1 GTAAGTTAT
*
47285045 GT-A-TAAT
1 GTAAGTTAT
*
47285052 GTTAGTTAT
1 GTAAGTTAT
**
47285061 CAAAGTTAT
1 GTAAGTTAT
47285070 GT-A-TTAT
1 GTAAGTTAT
47285077 GTAAGTTAT
1 GTAAGTTAT
*
47285086 TTAAGTTAT
1 GTAAGTTAT
*
47285095 GTAAGTTGT
1 GTAAGTTAT
47285104 GT-A-TTAT
1 GTAAGTTAT
47285111 GTAAGTTAT
1 GTAAGTTAT
* *
47285120 GTAGGCTAT
1 GTAAGTTAT
* *
47285129 GTATGTTAA
1 GTAAGTTAT
47285138 GTAAG-TAGT
1 GTAAGTTA-T
47285147 GT-A-TTAT
1 GTAAGTTAT
*
47285154 GTAAGTTGT
1 GTAAGTTAT
*
47285163 GT-A-TAAT
1 GTAAGTTAT
*
47285170 GTTAGTTAT
1 GTAAGTTAT
**
47285179 CAAAGTTAT
1 GTAAGTTAT
47285188 GT-A-TTAT
1 GTAAGTTAT
47285195 GTAAGTTAT
1 GTAAGTTAT
*
47285204 TTAAGTTAT
1 GTAAGTTAT
*
47285213 GTAAGTTGT
1 GTAAGTTAT
47285222 GT-A-TTAT
1 GTAAGTTAT
47285229 GTAAGTTAT
1 GTAAGTTAT
* * *
47285238 GTAGGCTAC
1 GTAAGTTAT
47285247 GT-A-TTAT
1 GTAAGTTAT
47285254 GTAAGTTAT
1 GTAAGTTAT
*
47285263 -TATGTTATTAT
1 GTAAG---TTAT
47285274 GTAAGTTAT
1 GTAAGTTAT
*
47285283 GCAAGTT
1 GTAAGTT
47285290 TATATATAAG
Statistics
Matches: 247, Mismatches: 48, Indels: 62
0.69 0.13 0.17
Matches are distributed among these distances:
6 4 0.02
7 55 0.22
8 30 0.12
9 151 0.61
11 4 0.02
12 3 0.01
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:47285010 original size:15 final size:16
Alignment explanation
Indices: 47284977--47285240 Score: 141
Period size: 16 Copynumber: 15.9 Consensus size: 16
47284967 TTATGTAAGC
*
47284977 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
47284993 TATGTAAGTTAT-TAT
1 TATGTAAGTTATGTAT
47285008 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
47285026 AATGT-A-TTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
47285042 TGTGT-A-TAATGTTAGT
1 TATGTAAGTTATG-TA-T
**
47285058 TATCAAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
47285074 TATGTAAGTTATTTAAGT
1 TATGTAAGTTATGT-A-T
*
47285092 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
*
47285108 TATGTAAGTTATGTAGGC
1 TATGTAAGTTATGTA--T
* * *
47285126 TATGTATGTTAAGTAAG
1 TATGTAAGTTATGT-AT
47285143 TAGTGT-A-TTATGTAAGT
1 TA-TGTAAGTTATGT-A-T
* *
47285160 TGTGT-A-TAATGTTAGT
1 TATGTAAGTTATG-TA-T
**
47285176 TATCAAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
47285192 TATGTAAGTTATTTAAGT
1 TATGTAAGTTATGT-A-T
*
47285210 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
47285226 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
47285241 GGCTACGTAT
Statistics
Matches: 196, Mismatches: 34, Indels: 36
0.74 0.13 0.14
Matches are distributed among these distances:
15 15 0.08
16 109 0.56
17 17 0.09
18 54 0.28
19 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:47285039 original size:25 final size:25
Alignment explanation
Indices: 47284961--47285289 Score: 134
Period size: 25 Copynumber: 13.0 Consensus size: 25
47284951 ATGGGTAAGT
*
47284961 TATGTATTATGTAAGCTATGTAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
47284986 TGTGTATTATGTAAGTTAT-T-A-T
1 TATGTATTATGTAAGTTATGTAAGT
*
47285008 TATGTAAGTTATGTAAGTAATGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * *
47285033 TATGTAAGTTGTGT-A-TAATGTTAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
**
47285058 TATCAAAGTTATGT-A-TTATGTAAGT
1 TAT-GTA-TTATGTAAGTTATGTAAGT
* *
47285083 TATTTAAGTTATGTAAGTTGTGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * *
47285108 TATGTAAGTTATGTAGGCTATGTATGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
* *
47285135 TAAGTAAGTAGTGT-A-TTATGTAAGT
1 TATGT-ATTA-TGTAAGTTATGTAAGT
* * * **
47285160 TGTGTATAATGTTAGTTATCAAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
47285185 TATGTATTATGTAAGTTATTTAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
47285210 TATGTAAGTTGTGT-A-TTATGTAAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
* *
47285235 TATGTAGGCTACGT-A-TTATGTAAGTTAT
1 TATGTA--TTATGTAAGTTATGTAAG---T
*
47285263 TATGTTATTATGTAAGTTATGCAAGT
1 TATG-TATTATGTAAGTTATGTAAGT
47285289 T
1 T
47285290 TATATATAAG
Statistics
Matches: 239, Mismatches: 42, Indels: 45
0.73 0.13 0.14
Matches are distributed among these distances:
22 5 0.02
23 11 0.05
24 19 0.08
25 156 0.65
26 8 0.03
27 24 0.10
28 6 0.03
29 10 0.04
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (25 bp):
TATGTATTATGTAAGTTATGTAAGT
Found at i:47285093 original size:34 final size:34
Alignment explanation
Indices: 47285055--47285119 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
47285045 GTATAATGTT
47285055 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
1 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
** *
47285089 AGTTATGTAAGTTGTGTATTATGTAAGTTAT
1 AGTTATCAAAGTTATGTATTATGTAAGTTAT
47285120 GTAGGCTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (34 bp):
AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
Found at i:47285130 original size:34 final size:33
Alignment explanation
Indices: 47285063--47285241 Score: 122
Period size: 34 Copynumber: 5.8 Consensus size: 33
47285053 TTAGTTATCA
* * *
47285063 AAGTTATGTATTATGTAAGTTATTTAAGTTATGT
1 AAGTTGTGTATTATGTAAGTTATGT-AGCTATGT
47285097 AAGTTGTGTATTATGTAAGTTATGTAGGCTATGT
1 AAGTTGTGTATTATGTAAGTTATGTA-GCTATGT
*
47285131 -A--TGT-TA--A-GTAAG-TAGTGTA-TTATGT
1 AAGTTGTGTATTATGTAAGTTA-TGTAGCTATGT
* *
47285156 AAGTTGTGTATAATGTTAGTTA--T--C-A---
1 AAGTTGTGTATTATGTAAGTTATGTAGCTATGT
* * *
47285181 AAGTTATGTATTATGTAAGTTATTTAAGTTATGT
1 AAGTTGTGTATTATGTAAGTTATGT-AGCTATGT
47285215 AAGTTGTGTATTATGTAAGTTATGTAG
1 AAGTTGTGTATTATGTAAGTTATGTAG
47285242 GCTACGTATT
Statistics
Matches: 114, Mismatches: 12, Indels: 39
0.69 0.07 0.24
Matches are distributed among these distances:
25 24 0.21
26 3 0.03
27 10 0.09
28 5 0.04
29 2 0.02
30 3 0.03
31 5 0.04
32 4 0.04
33 6 0.05
34 52 0.46
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (33 bp):
AAGTTGTGTATTATGTAAGTTATGTAGCTATGT
Found at i:47285163 original size:118 final size:118
Alignment explanation
Indices: 47284960--47285280 Score: 485
Period size: 118 Copynumber: 2.7 Consensus size: 118
47284950 CATGGGTAAG
* * * * *
47284960 TTATGT-A-TTATGTAAGCTATGTAAGTTGTGTATTATGTAAGTTAT-TA--TTATGTAAGTTAT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
47285020 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
47285073 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
*
47285138 GTAAGTAGTGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
* *
47285191 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTACGTA--TTAT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
47285254 GTAAGTTATTATGTTATTATGTAAGTT
66 GTAAG-TA--ATG-TATTATGTAAGTT
47285281 ATGCAAGTTT
Statistics
Matches: 190, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
113 6 0.03
114 1 0.01
115 36 0.19
116 10 0.05
117 2 0.01
118 120 0.63
119 2 0.01
120 13 0.07
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (118 bp):
TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
Found at i:47285478 original size:121 final size:121
Alignment explanation
Indices: 47285336--47285653 Score: 568
Period size: 121 Copynumber: 2.6 Consensus size: 121
47285326 TATGTATCTT
* * * *
47285336 ATTTATAATTATTTTTAAAATTATAAAATTCATT-ACTAATAAAATTGAAATGTAGGATATATAT
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGAC-AATAAAATTGAAATATAGGTTATATAT
47285400 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
65 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
*
47285457 ATTTAGAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATAGGTTATATATC
47285522 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
47285578 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATA-GTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATAGGTTATATATC
47285642 CATACCATATAT
66 CATACCATATAT
47285654 ATAAATTTTA
Statistics
Matches: 191, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
120 22 0.12
121 167 0.87
122 2 0.01
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (121 bp):
ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATAGGTTATATATC
CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
Found at i:47285674 original size:2 final size:2
Alignment explanation
Indices: 47285669--47285695 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
47285659 TTTTAAATAA
47285669 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
47285696 AATTTTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47285722 original size:18 final size:18
Alignment explanation
Indices: 47285699--47285787 Score: 101
Period size: 18 Copynumber: 4.8 Consensus size: 18
47285689 ATATATAAAT
47285699 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
47285717 TTTAAGTAATGTAAGTTATAAA
1 TTTAAGTAATGTAA--TAT--A
**
47285739 TTTTTGTAA-GTAATATA
1 TTTAAGTAATGTAATATA
47285756 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
*
47285774 TTTTAGTAA-GTAAT
1 TTTAAGTAATGTAAT
47285788 GTAAGTAATG
Statistics
Matches: 61, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
17 13 0.21
18 30 0.49
19 3 0.05
20 3 0.05
21 4 0.07
22 8 0.13
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:47285752 original size:39 final size:38
Alignment explanation
Indices: 47285683--47285882 Score: 176
Period size: 39 Copynumber: 5.1 Consensus size: 38
47285673 ATATATATAT
*
47285683 ATATATATATATAAATTTTAAGTAATGTAATATATTTAAGTA
1 ATATA-AT-TATAAATTTT-AGTAA-GTAATGTATTTAAGTA
* * *
47285725 ATGTAAGTTATAAATTTTTGTAAGTAATATATTTAAGTA
1 ATATAA-TTATAAATTTTAGTAAGTAATGTATTTAAGTA
* **
47285764 ATGTAA-TAT--ATTTTAGTAAGTAATGTAAGTAATGTA
1 ATATAATTATAAATTTTAGTAAGTAATGTATTTAA-GTA
*
47285800 ATATATACTT-T-AATTTTAGTAAGTCATGTATTTAAGTA
1 ATATA-A-TTATAAATTTTAGTAAGTAATGTATTTAAGTA
* * *
47285838 ATATATTTAAGTAAATTCTAGTAAGTAATGTATTTAATTA
1 ATATAATT-A-TAAATTTTAGTAAGTAATGTATTTAAGTA
47285878 ATATA
1 ATATA
47285883 TTTAAGTAAT
Statistics
Matches: 134, Mismatches: 14, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
35 19 0.14
36 9 0.07
37 4 0.03
38 9 0.07
39 44 0.33
40 33 0.25
41 11 0.08
42 5 0.04
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.45
Consensus pattern (38 bp):
ATATAATTATAAATTTTAGTAAGTAATGTATTTAAGTA
Found at i:47285782 original size:31 final size:31
Alignment explanation
Indices: 47285701--47285805 Score: 100
Period size: 31 Copynumber: 3.5 Consensus size: 31
47285691 ATATAAATTT
47285701 TAAGTAATGTAATATA--TT--TAAGTAATG
1 TAAGTAATGTAATATATTTTAGTAAGTAATG
* * *
47285728 TAAGT--TATAA-ATTTTTGTAAGTAA-TATATT
1 TAAGTAATGTAATATATTT-T-AGTAAGTA-ATG
47285758 TAAGTAATGTAATATATTTTAGTAAGTAATG
1 TAAGTAATGTAATATATTTTAGTAAGTAATG
47285789 TAAGTAATGTAATATAT
1 TAAGTAATGTAATATAT
47285806 ACTTTAATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
24 2 0.03
25 4 0.07
26 1 0.02
27 6 0.10
29 2 0.03
30 10 0.16
31 24 0.39
32 7 0.11
33 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.44
Consensus pattern (31 bp):
TAAGTAATGTAATATATTTTAGTAAGTAATG
Found at i:47285844 original size:13 final size:13
Alignment explanation
Indices: 47285828--47285892 Score: 71
Period size: 13 Copynumber: 4.9 Consensus size: 13
47285818 GTAAGTCATG
47285828 TATTTAAGTAATA
1 TATTTAAGTAATA
47285841 TATTTAAGTAA-A
1 TATTTAAGTAATA
*
47285853 T-TCTAGTAAGTAATG
1 TAT-T--TAAGTAATA
*
47285868 TATTTAATTAATA
1 TATTTAAGTAATA
47285881 TATTTAAGTAAT
1 TATTTAAGTAAT
47285893 GTAAGTTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 3 0.07
13 29 0.67
14 7 0.16
15 2 0.05
16 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:47285869 original size:40 final size:39
Alignment explanation
Indices: 47285683--47285887 Score: 165
Period size: 40 Copynumber: 5.3 Consensus size: 39
47285673 ATATATATAT
* *
47285683 ATATATATATATAAATTTTAAGTAATGTAATATATTTAAGTA
1 ATATATTTA-ATAAATTTT-AGTAA-GTAATGTATTTAAGTA
* * * *
47285725 ATGTAAGTT-ATAAATTTTTGTAAGTAATATATTTAAG--
1 ATAT-ATTTAATAAATTTTAGTAAGTAATGTATTTAAGTA
* * **
47285762 -TA-ATGTAATATATTTTAGTAAGTAATGTAAGTAATGTA
1 ATATATTTAATAAATTTTAGTAAGTAATGTATTTAA-GTA
*
47285800 ATATATACTT--T-AATTTTAGTAAGTCATGTATTTAAGTA
1 ATATAT--TTAATAAATTTTAGTAAGTAATGTATTTAAGTA
* *
47285838 ATATATTTAAGTAAATTCTAGTAAGTAATGTATTTAATTA
1 ATATATTTAA-TAAATTTTAGTAAGTAATGTATTTAAGTA
47285878 ATATATTTAA
1 ATATATTTAA
47285888 GTAATGTAAG
Statistics
Matches: 130, Mismatches: 20, Indels: 28
0.73 0.11 0.16
Matches are distributed among these distances:
34 2 0.02
35 22 0.17
36 4 0.03
38 9 0.07
39 37 0.28
40 41 0.32
41 9 0.07
42 4 0.03
43 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.11, T:0.45
Consensus pattern (39 bp):
ATATATTTAATAAATTTTAGTAAGTAATGTATTTAAGTA
Found at i:47286760 original size:13 final size:13
Alignment explanation
Indices: 47286742--47286771 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
47286732 TTCACTTCAT
47286742 TATTAATACCAAA
1 TATTAATACCAAA
*
47286755 TATTAATATCAAA
1 TATTAATACCAAA
47286768 TATT
1 TATT
47286772 TAACAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (13 bp):
TATTAATACCAAA
Found at i:47289527 original size:15 final size:15
Alignment explanation
Indices: 47289509--47289684 Score: 98
Period size: 15 Copynumber: 11.9 Consensus size: 15
47289499 ACCCTTGACA
*
47289509 CCCTAAACCTTAAAT
1 CCCTAAACCCTAAAT
*
47289524 CCCTAACCCCTAAAT
1 CCCTAAACCCTAAAT
* **
47289539 CTCTTAGCCCCTAAAT
1 C-CCTAAACCCTAAAT
* * *
47289555 TCCTAACCCCT-AAC
1 CCCTAAACCCTAAAT
* *
47289569 CCCT-AACCCTTAAC
1 CCCTAAACCCTAAAT
47289583 CCCTAAATCCCT-AA-
1 CCCTAAA-CCCTAAAT
*
47289597 CACCTAACCCCTAAAT
1 C-CCTAAACCCTAAAT
* *
47289613 CCCTAATCCCT-AAC
1 CCCTAAACCCTAAAT
* *
47289627 CCCTAAACCTTATAT
1 CCCTAAACCCTAAAT
*
47289642 CCC-AAACACCT-AAC
1 CCCTAAAC-CCTAAAT
47289656 CCCTAAATCCCT-AAT
1 CCCTAAA-CCCTAAAT
*
47289671 CCCTAACCCCTAAA
1 CCCTAAACCCTAAA
47289685 CCTTATATCC
Statistics
Matches: 127, Mismatches: 22, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
13 5 0.04
14 40 0.31
15 64 0.50
16 18 0.14
ACGTcount: A:0.34, C:0.44, G:0.01, T:0.22
Consensus pattern (15 bp):
CCCTAAACCCTAAAT
Found at i:47289536 original size:22 final size:22
Alignment explanation
Indices: 47289509--47289633 Score: 90
Period size: 22 Copynumber: 5.6 Consensus size: 22
47289499 ACCCTTGACA
*
47289509 CCCTAAACCTTAAATCCCTAAC
1 CCCTAAACCCTAAATCCCTAAC
* * ** *
47289531 CCCTAAATCTCTTAGCCCCTAAAT
1 CCCTAAA-CCCTAAATCCCT-AAC
* * *
47289555 TCCTAACCCCT-AACCCCTAAC
1 CCCTAAACCCTAAATCCCTAAC
* *
47289576 CCTTAACCCCTAAATCCCTAAC
1 CCCTAAACCCTAAATCCCTAAC
* * *
47289598 ACCTAACCCCTAAATCCCTAAT
1 CCCTAAACCCTAAATCCCTAAC
*
47289620 CCCTAACCCCTAAA
1 CCCTAAACCCTAAA
47289634 CCTTATATCC
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
21 11 0.13
22 54 0.66
23 10 0.12
24 7 0.09
ACGTcount: A:0.33, C:0.44, G:0.01, T:0.22
Consensus pattern (22 bp):
CCCTAAACCCTAAATCCCTAAC
Found at i:47289568 original size:7 final size:7
Alignment explanation
Indices: 47289556--47289683 Score: 112
Period size: 7 Copynumber: 17.7 Consensus size: 7
47289546 CCCCTAAATT
47289556 CCTAACC
1 CCTAACC
47289563 CCTAACC
1 CCTAACC
47289570 CCTAACC
1 CCTAACC
*
47289577 CTTAACC
1 CCTAACC
*
47289584 CCTAAATC
1 CCT-AACC
*
47289592 CCTAACA
1 CCTAACC
47289599 CCTAACC
1 CCTAACC
*
47289606 CCTAAATC
1 CCT-AACC
*
47289614 CCTAATC
1 CCTAACC
47289621 CCTAACC
1 CCTAACC
*
47289628 CCTAAAC
1 CCTAACC
* *
47289635 CTTATATC
1 CCTA-ACC
* *
47289643 CCAAACA
1 CCTAACC
47289650 CCTAACC
1 CCTAACC
*
47289657 CCTAAATC
1 CCT-AACC
*
47289665 CCTAATC
1 CCTAACC
47289672 CCTAACC
1 CCTAACC
47289679 CCTAA
1 CCTAA
47289684 ACCTTATATC
Statistics
Matches: 98, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
7 76 0.78
8 22 0.22
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.20
Consensus pattern (7 bp):
CCTAACC
Found at i:47289602 original size:29 final size:28
Alignment explanation
Indices: 47289556--47289689 Score: 109
Period size: 29 Copynumber: 4.9 Consensus size: 28
47289546 CCCCTAAATT
*
47289556 CCTAACCCCTAACCCCTAACCCTTAACC
1 CCTAATCCCTAACCCCTAACCCTTAACC
* * *
47289584 CCTAAATCCCTAACACCTAACCCCTAAATC
1 CCT-AATCCCTAACCCCTAA-CCCTTAACC
*
47289614 CCTAATCCCTAACCCCTAAACCTT-A--
1 CCTAATCCCTAACCCCTAACCCTTAACC
* * * *
47289639 --T-ATCCCAAACACCTAACCCCTAAATC
1 CCTAATCCCTAACCCCTAA-CCCTTAACC
*
47289665 CCTAATCCCTAACCCCTAAACCTTA
1 CCTAATCCCTAACCCCTAACCCTTA
47289690 TATCCCAAAC
Statistics
Matches: 82, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
22 13 0.16
23 4 0.05
24 1 0.01
27 1 0.01
28 11 0.13
29 42 0.51
30 10 0.12
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.21
Consensus pattern (28 bp):
CCTAATCCCTAACCCCTAACCCTTAACC
Found at i:47289624 original size:51 final size:51
Alignment explanation
Indices: 47289562--47289704 Score: 207
Period size: 51 Copynumber: 2.8 Consensus size: 51
47289552 AATTCCTAAC
* * * *
47289562 CCCTAACCCCTAACCCTTAACCCCTAAATCCCTAACACCTAACCCCTAAAT
1 CCCTAATCCCTAACCCCTAAACCCTAAATCCCAAACACCTAACCCCTAAAT
* *
47289613 CCCTAATCCCTAACCCCTAAACCTTATATCCCAAACACCTAACCCCTAAAT
1 CCCTAATCCCTAACCCCTAAACCCTAAATCCCAAACACCTAACCCCTAAAT
* *
47289664 CCCTAATCCCTAACCCCTAAACCTTATATCCCAAAC-CCTAA
1 CCCTAATCCCTAACCCCTAAACCCTAAATCCCAAACACCTAA
47289705 TAGAGTACAT
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
50 5 0.06
51 81 0.94
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (51 bp):
CCCTAATCCCTAACCCCTAAACCCTAAATCCCAAACACCTAACCCCTAAAT
Found at i:47289643 original size:22 final size:22
Alignment explanation
Indices: 47289547--47289684 Score: 124
Period size: 22 Copynumber: 6.3 Consensus size: 22
47289537 ATCTCTTAGC
* *
47289547 CCCTAAATTCCTAACCCCTAAC
1 CCCTAAATCCCTAACCCCTAAA
47289569 CCCT-AA-CCCTTAACCCCTAAA
1 CCCTAAATCCC-TAACCCCTAAA
47289590 TCCCT-AA-CACCTAACCCCTAAA
1 -CCCTAAATC-CCTAACCCCTAAA
47289612 TCCCT-AATCCCTAACCCCTAAA
1 -CCCTAAATCCCTAACCCCTAAA
* * * * *
47289634 CCTTATATCCCAAACACCTAAC
1 CCCTAAATCCCTAACCCCTAAA
* *
47289656 CCCTAAATCCCTAATCCCTAAC
1 CCCTAAATCCCTAACCCCTAAA
47289678 CCCTAAA
1 CCCTAAA
47289685 CCTTATATCC
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.02
21 15 0.15
22 79 0.80
23 3 0.03
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.21
Consensus pattern (22 bp):
CCCTAAATCCCTAACCCCTAAA
Found at i:47290893 original size:14 final size:14
Alignment explanation
Indices: 47290874--47290941 Score: 52
Period size: 15 Copynumber: 4.9 Consensus size: 14
47290864 ATGGCCGTTG
47290874 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
47290888 AAACCCCTAAACCTC
1 AAA-CCCTAAATCTC
*
47290903 TAACCCCTAAAT-T-
1 -AAACCCTAAATCTC
* *
47290916 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
47290929 AAACCTTAAATCT
1 AAACCCTAAATCT
47290942 ATACCCCGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
11 8 0.19
14 15 0.36
15 17 0.40
16 2 0.05
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:47290897 original size:15 final size:15
Alignment explanation
Indices: 47290877--47290914 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
47290867 GCCGTTGAAA
47290877 CCCTAAATCTCAAAC
1 CCCTAAATCTCAAAC
* *
47290892 CCCTAAACCTCTAAC
1 CCCTAAATCTCAAAC
47290907 CCCTAAAT
1 CCCTAAAT
47290915 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCTCAAAC
Found at i:47291494 original size:41 final size:41
Alignment explanation
Indices: 47291432--47291586 Score: 188
Period size: 41 Copynumber: 3.8 Consensus size: 41
47291422 TTTTGTTACT
** * *
47291432 ATTAGCGGCGCTTC-GGCAAAAATGCCGCTAAAGGCCAGAGT
1 ATTAGCGGCGC-TCAGATAAAAACGCCGCTAAAGGCCAGAGA
* * *
47291473 ATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATCC-GAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAG-GCCAGAGA
* *
47291514 ATTAGCGGCGCTTAGATAAAAATGCCGCTAAAGGCCAGAGA
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGA
*
47291555 ATTAGCGACGCTCAGATAAAAACGCCGCTAAA
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAA
47291587 TATCCGAGCA
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 4 0.04
41 91 0.94
42 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGCCAGAGA
Found at i:47291569 original size:82 final size:82
Alignment explanation
Indices: 47291432--47291601 Score: 277
Period size: 82 Copynumber: 2.1 Consensus size: 82
47291422 TTTTGTTACT
* * * * *
47291432 ATTAGCGGCGCTTCGGCAAAAATGCCGCTAAAGGCCAGAGTATTAGTGGCGCTCAGATAAAAACG
1 ATTAGCGGCGCTTAGACAAAAATGCCGCTAAAGGCCAGAGAATTAGCGACGCTCAGATAAAAACG
47291497 CCGCTAAAGATCCGAGC
66 CCGCTAAAGATCCGAGC
*
47291514 ATTAGCGGCGCTTAGATAAAAATGCCGCTAAAGGCCAGAGAATTAGCGACGCTCAGATAAAAACG
1 ATTAGCGGCGCTTAGACAAAAATGCCGCTAAAGGCCAGAGAATTAGCGACGCTCAGATAAAAACG
*
47291579 CCGCTAAATATCCGAGC
66 CCGCTAAAGATCCGAGC
47291596 ATTAGC
1 ATTAGC
47291602 TGTAACAACC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.18
Consensus pattern (82 bp):
ATTAGCGGCGCTTAGACAAAAATGCCGCTAAAGGCCAGAGAATTAGCGACGCTCAGATAAAAACG
CCGCTAAAGATCCGAGC
Found at i:47293088 original size:42 final size:42
Alignment explanation
Indices: 47293041--47293219 Score: 279
Period size: 42 Copynumber: 4.3 Consensus size: 42
47293031 AGTGCCTATT
47293041 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
* *
47293083 AGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
**
47293125 AGAATTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
* * *
47293167 AGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
*
47293208 AGGCTAAATGCC
1 AGGCTTAATGCC
47293220 AGTGTATTGA
Statistics
Matches: 125, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
41 29 0.23
42 96 0.77
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (42 bp):
AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
Found at i:47298719 original size:13 final size:13
Alignment explanation
Indices: 47298701--47298735 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
47298691 TTACTATGTG
47298701 TAAAAATTTTGTA
1 TAAAAATTTTGTA
47298714 TAAAAATTTTGTA
1 TAAAAATTTTGTA
47298727 TAAAAATTT
1 TAAAAATTT
47298736 GATCGTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (13 bp):
TAAAAATTTTGTA
Found at i:47300078 original size:42 final size:42
Alignment explanation
Indices: 47300030--47300255 Score: 280
Period size: 42 Copynumber: 5.4 Consensus size: 42
47300020 AGTGCCTATT
*
47300030 AGGCTTAATGCCTGTGAAACAATATCAGACTTTACGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
* *
47300072 AGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
*
47300114 AGACTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
* * *
47300156 AGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAGC
1 AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
* * * * * *
47300197 AGGCTAAATGCCAGTG-TACTGA-ATCAGGCTTTAAGTCTAGC
1 AGGCTTAATGCCGGTGAAAC-AATATCAGACTTTACGTCTAGC
*
47300238 AGGC-TAAGTGCCAGTGAA
1 AGGCTTAA-TGCCGGTGAA
47300256 TCTGTTTAAA
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
40 4 0.02
41 59 0.37
42 98 0.61
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
AGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAGC
Found at i:47300924 original size:12 final size:12
Alignment explanation
Indices: 47300907--47300933 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
47300897 CAAGCTCGGG
47300907 GATCGTCAACAA
1 GATCGTCAACAA
47300919 GATCGTCAACAA
1 GATCGTCAACAA
47300931 GAT
1 GAT
47300934 TATCACTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (12 bp):
GATCGTCAACAA
Found at i:47301445 original size:40 final size:41
Alignment explanation
Indices: 47301349--47301446 Score: 96
Period size: 40 Copynumber: 2.5 Consensus size: 41
47301339 GCGCTTTATA
* * **
47301349 TAAAACGCCGCTAATTC-CTATTTTTAGCGGCGCTTCTTGG
1 TAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCTTGG
* * *
47301389 -AAATCACTGCTGATGCTCTACCTTTAGCGGCGC-T-TTGG
1 TAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCTTGG
47301427 CTAAATCGCCGCTAATGCTC
1 -TAAATCGCCGCTAATGCTC
47301447 GATTTTTTGT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
38 4 0.09
39 12 0.27
40 29 0.64
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.32
Consensus pattern (41 bp):
TAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCTTGG
Found at i:47304696 original size:382 final size:382
Alignment explanation
Indices: 47303990--47304754 Score: 1476
Period size: 382 Copynumber: 2.0 Consensus size: 382
47303980 CTCACTAGCT
47303990 TTATACCTTTAGATATTTGGACTAATGGTCCAAACACTCCACGAATTTAATTATACTTAAGTTCC
1 TTATACCTTTAGATATTTGGACTAATGGTCCAAACACTCCACGAATTTAATTATACTTAAGTTCC
*
47304055 GTCTTTCTATTTTGATCAGTTTATTCCATATCTATATTTCTCAATAAATTTATTCAAGATCATCC
66 GTCTTTCTATTTTGATCAGTTTATTCCATATCCATATTTCTCAATAAATTTATTCAAGATCATCC
47304120 TTTTATTTCGTTATTTCAACAATAATATTGCATGCAAAACCATTGTCAACCACTTTTATTATCAA
131 TTTTATTTCGTTATTTCAACAATAATATTGCATGCAAAACCATTGTCAACCACTTTTATTATCAA
47304185 TTCCATATTTTCTTGAATTGACATAACTTATCGAGATATCTTATTTTCACTATTTTAATATTCAG
196 TTCCATATTTTCTTGAATTGACATAACTTATCGAGATATCTTATTTTCACTATTTTAATATTCAG
47304250 TTTTAGGTACTTGAATCTCTTCTATAGTTTTACTTATTAGTTATGCCTTGGGTCTCTTCTGGAGC
261 TTTTAGGTACTTGAATCTCTTCTATAGTTTTACTTATTAGTTATGCCTTGGGTCTCTTCTGGAGC
*
47304315 ACCCACCTTCACTATATGATCATCTAAATTTATTGTTTTCTTGTATGAGAAATTTCA
326 ACCCACCTTCACTATATGACCATCTAAATTTATTGTTTTCTTGTATGAGAAATTTCA
* *
47304372 TTATACCTTTAGATATTTGGACTAATGGTCCAAACACTCTACGAATTTAATTATACTTAAGTTTC
1 TTATACCTTTAGATATTTGGACTAATGGTCCAAACACTCCACGAATTTAATTATACTTAAGTTCC
47304437 GTCTTTCTATTTTGATCAGTTTATTCCATATCCATATTTCTCAATAAATTTATTCAAGATCATCC
66 GTCTTTCTATTTTGATCAGTTTATTCCATATCCATATTTCTCAATAAATTTATTCAAGATCATCC
47304502 TTTTATTTCGTTATTTCAACAATAATATTGCATGCAAAACCATTGTCAACCACTTTTATTATCAA
131 TTTTATTTCGTTATTTCAACAATAATATTGCATGCAAAACCATTGTCAACCACTTTTATTATCAA
47304567 TTCCATATTTTCTTGAATTGACATAACTTATCGAGATATCTTATTTTCACTATTTTAATATTCAG
196 TTCCATATTTTCTTGAATTGACATAACTTATCGAGATATCTTATTTTCACTATTTTAATATTCAG
47304632 TTTTAGGTACTTGAATCTCTTCTATAGTTTTACTTATTAGTTATGCCTTGGGTCTCTTCTGGAGC
261 TTTTAGGTACTTGAATCTCTTCTATAGTTTTACTTATTAGTTATGCCTTGGGTCTCTTCTGGAGC
* *
47304697 ACCCACCTTCACTATATGGCCATCTAAATTTATTGTTTTCTTGTATGAGAATTTTCA
326 ACCCACCTTCACTATATGACCATCTAAATTTATTGTTTTCTTGTATGAGAAATTTCA
47304754 T
1 T
47304755 ATTTGGAACT
Statistics
Matches: 377, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
382 377 1.00
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (382 bp):
TTATACCTTTAGATATTTGGACTAATGGTCCAAACACTCCACGAATTTAATTATACTTAAGTTCC
GTCTTTCTATTTTGATCAGTTTATTCCATATCCATATTTCTCAATAAATTTATTCAAGATCATCC
TTTTATTTCGTTATTTCAACAATAATATTGCATGCAAAACCATTGTCAACCACTTTTATTATCAA
TTCCATATTTTCTTGAATTGACATAACTTATCGAGATATCTTATTTTCACTATTTTAATATTCAG
TTTTAGGTACTTGAATCTCTTCTATAGTTTTACTTATTAGTTATGCCTTGGGTCTCTTCTGGAGC
ACCCACCTTCACTATATGACCATCTAAATTTATTGTTTTCTTGTATGAGAAATTTCA
Found at i:47309369 original size:20 final size:20
Alignment explanation
Indices: 47309346--47309385 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
47309336 GTAGTAACTG
*
47309346 TTTTAACTAAATC-TTAACAA
1 TTTTAA-TAAAACTTTAACAA
47309366 TTTTAATAAAACTTTAACAA
1 TTTTAATAAAACTTTAACAA
47309386 ACTTAACAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTTAATAAAACTTTAACAA
Found at i:47309834 original size:18 final size:18
Alignment explanation
Indices: 47309804--47309841 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
47309794 AATTCATAAA
47309804 GTTATTATCTTTCAAAAC
1 GTTATTATCTTTCAAAAC
47309822 GTTATTAAT-TTTCAAAAC
1 GTTATT-ATCTTTCAAAAC
47309840 GT
1 GT
47309842 CACTTATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (18 bp):
GTTATTATCTTTCAAAAC
Found at i:47323172 original size:22 final size:21
Alignment explanation
Indices: 47323146--47323197 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
47323136 GGGGGTCAAT
*
47323146 ACGCCCGTGTGGGAGGAGGTAC
1 ACGCCCGTGT-GGAGGAGGCAC
* *
47323168 ACGCCTGTGTGGATGAGGCAC
1 ACGCCCGTGTGGAGGAGGCAC
*
47323189 ATGCCCGTG
1 ACGCCCGTG
47323198 CGGATAAGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.17, C:0.25, G:0.40, T:0.17
Consensus pattern (21 bp):
ACGCCCGTGTGGAGGAGGCAC
Found at i:47330498 original size:55 final size:55
Alignment explanation
Indices: 47330412--47330521 Score: 193
Period size: 55 Copynumber: 2.0 Consensus size: 55
47330402 GACCCTAATC
47330412 GGAACAATGGTTTCGGGACCACAAATCCGAGTAAAAAATATTTAAATATTATTAT
1 GGAACAATGGTTTCGGGACCACAAATCCGAGTAAAAAATATTTAAATATTATTAT
* * *
47330467 GGAACAGTGGTTTCGGGACCACAAGTTCGAGTAAAAAATATTTAAATATTATTAT
1 GGAACAATGGTTTCGGGACCACAAATCCGAGTAAAAAATATTTAAATATTATTAT
47330522 CTATGTTTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (55 bp):
GGAACAATGGTTTCGGGACCACAAATCCGAGTAAAAAATATTTAAATATTATTAT
Found at i:47336924 original size:55 final size:55
Alignment explanation
Indices: 47336840--47336966 Score: 200
Period size: 55 Copynumber: 2.3 Consensus size: 55
47336830 TTAATGAAAG
*
47336840 CAAGTCAATGAGTTACATGGGCTAGTCACAAAGGCGTGTTGCTAGCCGTATGACC
1 CAAGTCAATGAGTTACATGGGCTAGTCACAAAGGCGTGTGGCTAGCCGTATGACC
* * * * *
47336895 CAAGTCAATGAGTTACATGGGCTAGTCACACAGGGGTGTGGTTGGCCGTGTGACC
1 CAAGTCAATGAGTTACATGGGCTAGTCACAAAGGCGTGTGGCTAGCCGTATGACC
47336950 CAAGTCAATGAGTTACA
1 CAAGTCAATGAGTTACA
47336967 CGGGGTCAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (55 bp):
CAAGTCAATGAGTTACATGGGCTAGTCACAAAGGCGTGTGGCTAGCCGTATGACC
Found at i:47340079 original size:20 final size:19
Alignment explanation
Indices: 47340054--47340147 Score: 86
Period size: 20 Copynumber: 4.9 Consensus size: 19
47340044 ACTTCCTTAT
47340054 ATGTATGCAACATATCATAC
1 ATGTATGCAACATAT-ATAC
*
47340074 ATGTATGCAATATATATATC
1 ATGTATGCAACATATATA-C
* * *
47340094 GTG-A--CATGCTTATATAC
1 ATGTATGCA-ACATATATAC
47340111 ATGTATGCAACATATCATAC
1 ATGTATGCAACATAT-ATAC
*
47340131 ATGTATGCAATATATAT
1 ATGTATGCAACATATAT
47340148 CGTGACATAC
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
17 5 0.08
18 7 0.12
19 10 0.17
20 37 0.63
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (19 bp):
ATGTATGCAACATATATAC
Found at i:47340133 original size:57 final size:55
Alignment explanation
Indices: 47340054--47340166 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 55
47340044 ACTTCCTTAT
*
47340054 ATGTATGCAACATATCATACATGTATGCAATATATATATCGTGACATGCTTATATAC
1 ATGTATGCAACATATCATACATGTATGC-A-ATATATATCGTGACATACTTATATAC
47340111 ATGTATGCAACATATCATACATGTATGCAATATATATCGTGACATACTTATATAC
1 ATGTATGCAACATATCATACATGTATGCAATATATATCGTGACATACTTATATAC
47340166 A
1 A
47340167 GTCATACATA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
55 26 0.47
56 1 0.02
57 28 0.51
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.35
Consensus pattern (55 bp):
ATGTATGCAACATATCATACATGTATGCAATATATATCGTGACATACTTATATAC
Found at i:47340145 original size:37 final size:37
Alignment explanation
Indices: 47340054--47340146 Score: 91
Period size: 37 Copynumber: 2.4 Consensus size: 37
47340044 ACTTCCTTAT
*
47340054 ATGTATGCAACATATCATACATGTATGCAATATATATATC
1 ATGTATGC-A-ATAT-ATACATGTATGCAACATATATATC
* * *
47340094 GTGACATGC-TTATATACATGTATGCAACATATCATA-C
1 ATG-TATGCAATATATACATGTATGCAACATAT-ATATC
47340131 ATGTATGCAATATATA
1 ATGTATGCAATATATA
47340147 TCGTGACATA
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
36 4 0.09
37 27 0.63
38 6 0.14
40 2 0.05
41 4 0.09
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (37 bp):
ATGTATGCAATATATACATGTATGCAACATATATATC
Found at i:47340181 original size:57 final size:57
Alignment explanation
Indices: 47340054--47340174 Score: 185
Period size: 55 Copynumber: 2.2 Consensus size: 57
47340044 ACTTCCTTAT
* *
47340054 ATGTATGCAACATATCATACATGTATGCAATATATATATCGTGACATGCTTATATAC
1 ATGTATACAACATATCATACATGTATGCAATATATATATCGTGACATACTTATATAC
*
47340111 ATGTATGCAACATATCATACATGTATGC-A-ATATATATCGTGACATACTTATATAC
1 ATGTATACAACATATCATACATGTATGCAATATATATATCGTGACATACTTATATAC
47340166 A-GTCATACA
1 ATGT-ATACA
47340175 TAACATAAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
54 2 0.03
55 30 0.49
56 1 0.02
57 28 0.46
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.34
Consensus pattern (57 bp):
ATGTATACAACATATCATACATGTATGCAATATATATATCGTGACATACTTATATAC
Found at i:47341304 original size:44 final size:44
Alignment explanation
Indices: 47341241--47341328 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
47341231 TGCCACCAAT
* * *
47341241 CGGGATAACCTCTCCAATCCCATAATTTTCTCTTAAAATGACTC
1 CGGGATAACCTCTCCAATCCCATAATCTTCTCCTAAAATCACTC
47341285 CGGGATAACCTC-CCTAATCCCATAATCTTCTCCTAAAATCACTC
1 CGGGATAACCTCTCC-AATCCCATAATCTTCTCCTAAAATCACTC
47341329 TAACCTTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.30, C:0.33, G:0.08, T:0.30
Consensus pattern (44 bp):
CGGGATAACCTCTCCAATCCCATAATCTTCTCCTAAAATCACTC
Found at i:47349087 original size:23 final size:23
Alignment explanation
Indices: 47349061--47349104 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
47349051 AAGGTGACTG
47349061 TAATATCCC-GAAAATTACTACTA
1 TAATA-CCCTGAAAATTACTACTA
47349084 TAATACCCTGAAAATTACTAC
1 TAATACCCTGAAAATTACTAC
47349105 AGTAAGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.30
Consensus pattern (23 bp):
TAATACCCTGAAAATTACTACTA
Found at i:47358775 original size:44 final size:44
Alignment explanation
Indices: 47358712--47359092 Score: 514
Period size: 44 Copynumber: 8.7 Consensus size: 44
47358702 GGTGAAACTA
* *
47358712 TAAGTTCTATCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
47358756 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * *
47358800 CATGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGACTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * * * *
47358844 CATGTCCTAGCTCCCTAAATAGCAGTGGAATAGGTGGAAAATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * *
47358888 TAAGTCCTATCTCCCTGAACAACAGTGGAATAGGTCGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
**
47358932 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTCAAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* *
47358976 CATGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* * * * *
47359020 CATGTCCTAGCTCCCTGAATAGTAGTGGAATAGGTGAAAGATTG
1 TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
* *
47359064 T-AGATCCTATCTCCCT-AAGCAGTAGTGGA
1 TAAG-TCCTAGCTCCCTGAA-CAGCAGTGGA
47359093 GTACATCGAA
Statistics
Matches: 304, Mismatches: 31, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
43 3 0.01
44 301 0.99
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (44 bp):
TAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTG
Found at i:47370118 original size:16 final size:16
Alignment explanation
Indices: 47370099--47370129 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47370089 TTGAAAGAGT
47370099 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
47370115 TTTCAAATTTATATG
1 TTTCAAATATATATG
47370130 CTCCAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:47374566 original size:14 final size:14
Alignment explanation
Indices: 47374547--47374573 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47374537 TGGGTATTTG
47374547 TGAAAAAAATGAAA
1 TGAAAAAAATGAAA
47374561 TGAAAAAAATGAA
1 TGAAAAAAATGAA
47374574 GTCCTAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
TGAAAAAAATGAAA
Found at i:47388359 original size:17 final size:15
Alignment explanation
Indices: 47388319--47388369 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
47388309 ATTAAGGCTC
*
47388319 AGAAAGAAGCATAAA
1 AGAAAGAAGCAGAAA
*
47388334 AGAAGGAAGCAGAAGGA
1 AGAAAGAAGCAGAA--A
47388351 AGAAAGAAGCAG-AA
1 AGAAAGAAGCAGAAA
47388365 AGAAA
1 AGAAA
47388370 AGGCTTTGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 6 0.19
15 12 0.39
16 1 0.03
17 12 0.39
ACGTcount: A:0.63, C:0.06, G:0.29, T:0.02
Consensus pattern (15 bp):
AGAAAGAAGCAGAAA
Found at i:47393526 original size:13 final size:13
Alignment explanation
Indices: 47393508--47393532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47393498 TAATGGTATA
47393508 TTGAATCCATGAC
1 TTGAATCCATGAC
47393521 TTGAATCCATGA
1 TTGAATCCATGA
47393533 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:47394113 original size:27 final size:26
Alignment explanation
Indices: 47394082--47394232 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 26
47394072 TAAATTGTAC
47394082 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
47394109 TGCACTAAGTGTGCGAATTGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* * *
47394135 ATGCACTAAGTGTGAGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
47394163 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
47394191 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
47394218 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47394233 GGCTCAATAT
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 78 0.74
28 26 0.25
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:47394223 original size:55 final size:53
Alignment explanation
Indices: 47394082--47394232 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 53
47394072 TAAATTGTAC
* *
47394082 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAATATG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATG
* * * ** * *
47394135 ATGCACTAAGTGTGAGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATG
* * *
47394190 TAGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
47394233 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 1 0.01
54 36 0.46
55 41 0.52
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGAATATG
Found at i:47409617 original size:39 final size:38
Alignment explanation
Indices: 47409563--47409723 Score: 218
Period size: 39 Copynumber: 4.4 Consensus size: 38
47409553 NNNNNNNNNN
47409563 CGGGTCTTAGCCCGGATATATCAACTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATATCAACTGCAC-AATGCCTT
47409602 CGGGTCTTAGCCCGGATAT-TC-A-TGCAC-ATG-CTT
1 CGGGTCTTAGCCCGGATATATCAACTGCACAATGCCTT
47409635 C-GGTCTTAG-CC--ATATATCAACTGCACAATGCCTT
1 CGGGTCTTAGCCCGGATATATCAACTGCACAATGCCTT
47409669 C-GGTCTTAG-CCGGATATATCAACTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATATCAAC-TGCAC-AATGCCTT
47409707 CGGGTCTTAGCCCGGAT
1 CGGGTCTTAGCCCGGAT
47409724 GTATTCAAAT
Statistics
Matches: 111, Mismatches: 0, Indels: 21
0.84 0.00 0.16
Matches are distributed among these distances:
29 4 0.04
30 2 0.02
31 3 0.03
32 13 0.12
33 7 0.06
34 17 0.15
36 15 0.14
37 6 0.05
38 11 0.10
39 27 0.24
40 6 0.05
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (38 bp):
CGGGTCTTAGCCCGGATATATCAACTGCACAATGCCTT
Found at i:47417220 original size:10 final size:10
Alignment explanation
Indices: 47417207--47417266 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
47417197 TGATGAATAA
47417207 AACAATAAAT
1 AACAATAAAT
47417217 AACAATAAAT
1 AACAATAAAT
*
47417227 AAC----AAC
1 AACAATAAAT
47417233 AACAATAAAT
1 AACAATAAAT
*
47417243 AACAACGATAAT
1 AACAA-TA-AAT
47417255 AACAATAAAT
1 AACAATAAAT
47417265 AA
1 AA
47417267 TACAACACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
6 5 0.12
10 25 0.62
11 2 0.05
12 8 0.20
ACGTcount: A:0.68, C:0.13, G:0.02, T:0.17
Consensus pattern (10 bp):
AACAATAAAT
Found at i:47417227 original size:22 final size:22
Alignment explanation
Indices: 47417202--47417266 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 22
47417192 AATAATGATG
47417202 AATAA-AACAATAAATAACAATA
1 AATAACAACAATAAATAACAA-A
*
47417224 AATAACAACAACAATAAATAACAAC
1 AAT---AACAACAATAAATAACAAA
* *
47417249 GATAATAACAATAAATAA
1 AATAACAACAATAAATAA
47417267 TACAACACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 17 0.47
25 4 0.11
26 15 0.42
ACGTcount: A:0.69, C:0.12, G:0.02, T:0.17
Consensus pattern (22 bp):
AATAACAACAATAAATAACAAA
Found at i:47417255 original size:12 final size:12
Alignment explanation
Indices: 47417202--47417281 Score: 65
Period size: 12 Copynumber: 6.4 Consensus size: 12
47417192 AATAATGATG
47417202 AATAA-AACAAT
1 AATAACAACAAT
*
47417213 AAATAACAATAAAT
1 -AATAACAA-CAAT
*
47417227 AACAACAACAAT
1 AATAACAACAAT
*
47417239 AAATAACAACGAT
1 -AATAACAACAAT
*
47417252 AATAACAATAAAT
1 AATAACAA-CAAT
47417265 AAT-ACAACACAT
1 AATAACAACA-AT
47417277 AATAA
1 AATAA
47417282 GACAATATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
11 1 0.02
12 25 0.46
13 25 0.46
14 3 0.06
ACGTcount: A:0.68, C:0.14, G:0.01, T:0.17
Consensus pattern (12 bp):
AATAACAACAAT
Found at i:47417256 original size:16 final size:16
Alignment explanation
Indices: 47417217--47417248 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
47417207 AACAATAAAT
47417217 AACAATAAATAACAAC
1 AACAATAAATAACAAC
47417233 AACAATAAATAACAAC
1 AACAATAAATAACAAC
47417249 GATAATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.19, G:0.00, T:0.12
Consensus pattern (16 bp):
AACAATAAATAACAAC
Found at i:47419333 original size:132 final size:132
Alignment explanation
Indices: 47418904--47419396 Score: 731
Period size: 132 Copynumber: 3.7 Consensus size: 132
47418894 AATGTCAAGG
* * * * *
47418904 AGATAAGATTCACTGCCTTCT-ATCTGCTCTACTACTACTTAGGGAGACAGGATCTACAGTCTTC
1 AGATAAGATTCACCGTCTT-TGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTC
* * *
47418968 AACCTATTCCACTACTG-CCTAGGGAGATAGGGCTGGTGGCTTAAATCAGCTTCCTTACTACCTT
65 AACCTATTCCACTACTGTCC-AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTT
47419032 GGGA
129 GGGA
* *
47419036 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTATTTAAGGAGACAAGATCTACAATCTTCA
1 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
*
47419101 ACCTATTCCACTGCTGTCCAGGGAGATAGGACT-GTGGCTTAAATCTGCTTCCCTACTACCTTGG
66 ACCTATTCCACTACTGTCCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
47419165 GA
131 GA
* * * *
47419167 AGATAAGATTCACCGTCCTTGATCTGCTCTACTACTGCTTAAGGAGACAGGATGTACAATCTTCA
1 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
* * * * *
47419232 ACCTAATCCACTGCTATCCAGGGAGATAGGACTGGCGGCTTAAATCTGCTTCCCTACTATCTTGG
66 ACCTATTCCACTACTGTCCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
47419297 GA
131 GA
* * *
47419299 AGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCA
1 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
*
47419364 ACCTATTCCACTACTGTCCAAGGAGATAGGACT
66 ACCTATTCCACTACTGTCCAGGGAGATAGGACT
47419397 TACAATCTTC
Statistics
Matches: 328, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
131 122 0.37
132 204 0.62
133 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (132 bp):
AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
ACCTATTCCACTACTGTCCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
GA
Found at i:47419371 original size:263 final size:263
Alignment explanation
Indices: 47418904--47419396 Score: 765
Period size: 263 Copynumber: 1.9 Consensus size: 263
47418894 AATGTCAAGG
* * * *
47418904 AGATAAGATTCACTGCCTTCTATCTGCTCTACTACTACTTAGGGAGACAGGATCTACAGTCTTCA
1 AGATAAGATTCACCGCCTTCGATCTGCTCTACTACTACTTAAGGAGACAGGATCTACAATCTTCA
* * * *
47418969 ACCTATTCCACTACTGCCTAGGGAGATAGGGCTGGTGGCTTAAATCAGCTTCCTTACTACCTTGG
66 ACCTAATCCACTACTGCCTAGGGAGATAGGACTGGCGGCTTAAATCAGCTTCCCTACTACCTTGG
*
47419034 GAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTATTTAAGGAGACAAGATCTACAATCTT
131 GAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAAGATCTACAATCTT
* *
47419099 CAACCTATTCCACTGCTGTCCAGGGAGATAGGACTGTGGCTTAAATCTGCTTCCCTACTACCTTG
196 CAACCTATTCCACTACTGTCCAAGGAGATAGGACTGTGGCTTAAATCTGCTTCCCTACTACCTTG
47419164 GGA
261 GGA
* *
47419167 AGATAAGATTCACCGTCCTT-GATCTGCTCTACTACTGCTTAAGGAGACAGGATGTACAATCTTC
1 AGATAAGATTCACCG-CCTTCGATCTGCTCTACTACTACTTAAGGAGACAGGATCTACAATCTTC
* * * *
47419231 AACCTAATCCACTGCTATCC-AGGGAGATAGGACTGGCGGCTTAAATCTGCTTCCCTACTATCTT
65 AACCTAATCCACTACT-GCCTAGGGAGATAGGACTGGCGGCTTAAATCAGCTTCCCTACTACCTT
* * * *
47419295 GGGAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATC
129 GGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAAGATCTACAATC
47419360 TTCAACCTATTCCACTACTGTCCAAGGAGATAGGACT
194 TTCAACCTATTCCACTACTGTCCAAGGAGATAGGACT
47419397 TACAATCTTC
Statistics
Matches: 207, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
263 201 0.97
264 6 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (263 bp):
AGATAAGATTCACCGCCTTCGATCTGCTCTACTACTACTTAAGGAGACAGGATCTACAATCTTCA
ACCTAATCCACTACTGCCTAGGGAGATAGGACTGGCGGCTTAAATCAGCTTCCCTACTACCTTGG
GAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAAGATCTACAATCTT
CAACCTATTCCACTACTGTCCAAGGAGATAGGACTGTGGCTTAAATCTGCTTCCCTACTACCTTG
GGA
Done.