Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 166 of 228
Found at i:49754011 original size:19 final size:19
Alignment explanation
Indices: 49753986--49754058 Score: 71
Period size: 19 Copynumber: 3.7 Consensus size: 19
49753976 GAACAAATGC
49753986 AAAATTATTAAAAAAT-TT
1 AAAATTATTAAAAAATATT
*
49754004 AGAAATTA-TAAAGAATATT
1 A-AAATTATTAAAAAATATT
49754023 AATAATTATTGAAAAAATATTT
1 AA-AATTATT-AAAAAATA-TT
49754045 AAAA-TATATAAAAA
1 AAAATTAT-TAAAAA
49754059 CTAAAAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
18 9 0.20
19 14 0.30
20 9 0.20
21 10 0.22
22 4 0.09
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
AAAATTATTAAAAAATATT
Found at i:49754082 original size:14 final size:15
Alignment explanation
Indices: 49754063--49754091 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49754053 TAAAAACTAA
49754063 AAAAAT-ATATTATG
1 AAAAATAATATTATG
49754077 AAAAATAATATTATG
1 AAAAATAATATTATG
49754092 TGGTTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AAAAATAATATTATG
Found at i:49755313 original size:2 final size:2
Alignment explanation
Indices: 49755306--49755330 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49755296 ACTCCGCCAT
49755306 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
49755331 CCAGAAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49755766 original size:36 final size:34
Alignment explanation
Indices: 49755726--49755806 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 34
49755716 AATTTAATTT
49755726 ATATTTTATTATTTGATTCA-AATATAATCTGTAAAA
1 ATATTTTATTATTTGATT-AGAATATAAT-T-TAAAA
*
49755762 ATATTTTGA-TATTTTATTATGAATATAATTTAAAA
1 ATATTTT-ATTATTTGATTA-GAATATAATTTAAAA
49755797 ATATTTTATT
1 ATATTTTATT
49755807 GTATATTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
34 1 0.03
35 14 0.35
36 16 0.40
37 9 0.22
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (34 bp):
ATATTTTATTATTTGATTAGAATATAATTTAAAA
Found at i:49755973 original size:19 final size:18
Alignment explanation
Indices: 49755931--49755976 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
49755921 ATATAATTGT
*
49755931 AATAATTTTTAATTATTT
1 AATAATTTTTAATTATTA
* *
49755949 ATTAATTTTGTAATTGTTA
1 AATAATTTT-TAATTATTA
49755968 AATAATTTT
1 AATAATTTT
49755977 AAAAACTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (18 bp):
AATAATTTTTAATTATTA
Found at i:49764536 original size:20 final size:20
Alignment explanation
Indices: 49764498--49764542 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 20
49764488 AAACTAAACA
49764498 AAAATTCAGATATAATTA-T
1 AAAATTCAGATATAATTATT
49764517 AAAATTCA-ATATAAACTTATT
1 AAAATTCAGATAT-AA-TTATT
49764538 AAAAT
1 AAAAT
49764543 GAAATTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 3 0.13
21 6 0.26
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTCAGATATAATTATT
Found at i:49790059 original size:21 final size:21
Alignment explanation
Indices: 49790033--49790074 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49790023 CAAACAATCA
*
49790033 CAAAAAATATTAATACCTTTT
1 CAAAAAATATCAATACCTTTT
* *
49790054 CAAAAAGTATCGATACCTTTT
1 CAAAAAATATCAATACCTTTT
49790075 ACTAGGTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.36
Consensus pattern (21 bp):
CAAAAAATATCAATACCTTTT
Found at i:49795013 original size:51 final size:50
Alignment explanation
Indices: 49794888--49795075 Score: 198
Period size: 51 Copynumber: 3.7 Consensus size: 50
49794878 TATCATTCGA
* * * *
49794888 TACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAAATTTTCGG
1 TACACATAGTAGCCTACACATAGTACTACACACGTGACCAAAACTTCCGG
* ** * *
49794938 TTCATGTAGTAGCCTACACATAGTACCACACACGTGACCAAAGCCTTCCGG
1 TACACATAGTAGCCTACACATAGTACTACACACGTGACCAAA-ACTTCCGG
* * * *
49794989 TACACATAGTAGCCTACACATAGTACTACACATGTGACCATTATCTAT-CGA
1 TACACATAGTAGCCTACACATAGTACTACACACGTGACCA-AAACT-TCCGG
* * *
49795040 TACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TACACATAGTAGCCTACACATAGTACTACACACGTG
49795076 TTTATAGGCA
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 36 0.32
51 76 0.67
52 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (50 bp):
TACACATAGTAGCCTACACATAGTACTACACACGTGACCAAAACTTCCGG
Found at i:49795019 original size:12 final size:13
Alignment explanation
Indices: 49794989--49795021 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
49794979 AGCCTTCCGG
49794989 TACACATAGTAGCC
1 TACACATAGTA-CC
49795003 TACACATAGTA-C
1 TACACATAGTACC
49795015 TACACAT
1 TACACAT
49795022 GTGACCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
14 11 0.58
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.24
Consensus pattern (13 bp):
TACACATAGTACC
Found at i:49808735 original size:74 final size:75
Alignment explanation
Indices: 49808611--49808759 Score: 237
Period size: 74 Copynumber: 2.0 Consensus size: 75
49808601 GTTGTCCCAT
49808611 AATTTTTTGATGTCATGGGAAACAGGTTGACAACATGTTTGCAACGTGTTGACTACTTCTATTAG
1 AATTTTTTGATGTCATGGGAAACAGGTTGACAACATGTTTGCAACGTGTTGACTACTTCTATTAG
49808676 GATTTGTATA
66 GATTTGTATA
* * * * *
49808686 AATTTTTT-ATGTCATGTGAAATAGGTTGATAACATGTTTGCAACTTGTTGACTGCTTCTATTAG
1 AATTTTTTGATGTCATGGGAAACAGGTTGACAACATGTTTGCAACGTGTTGACTACTTCTATTAG
*
49808750 GATTTTTATA
66 GATTTGTATA
49808760 TAAATTACTA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
74 60 0.88
75 8 0.12
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (75 bp):
AATTTTTTGATGTCATGGGAAACAGGTTGACAACATGTTTGCAACGTGTTGACTACTTCTATTAG
GATTTGTATA
Found at i:49809052 original size:73 final size:75
Alignment explanation
Indices: 49808859--49809519 Score: 497
Period size: 73 Copynumber: 9.1 Consensus size: 75
49808849 TTTTTACCCT
* ** * * * *
49808859 AACC-TTTTT-AAGGTTGCCTTAGAC-GGGTTTATCCCAA-CTTTTTTTAA-GTTGCCTTGGAAA
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATC-TTTTTAAAGGTTGCCTTAGACA
49808919 AGGTCTATCCC
65 AGGTCTATCCC
* * * * * *
49808930 AACC-TTTTT-AAGGTTGCTTTAAACGA-GTCTATCCC-AGCATTTTT-AAGGTTGTCTTAGAC-
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATC-TTTTTAAAGGTTGCCTTAGACA
* *
49808989 AGGTCAATCCT
65 AGGTCTATCCC
* * * *
49809000 AACCTTTTTTAAAAGTTGCCTTAGACAATGCCTATCCTAATCTTTTT-CAGGTTACCTTAGACGA
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATCTTTTTAAAGGTTGCCTTAGAC-A
49809064 A--TCTATCCC
65 AGGTCTATCCC
* * * *
49809073 AACC-TTTTT-AAGGTTGCCTTAGACGA-GTCTATCCCAACCTTTTTTTAAGGTTGCCTTAGAC-
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATC-TTTTTAAAGGTTGCCTTAGACA
*
49809134 TGGTCTA-CCC
65 AGGTCTATCCC
* * * *
49809144 TAA-CATTTTTAAAAGGTTGCCTTAGACAA-GTCTATCTCAACCTTTTTAAAAAGTTGCCTTAGA
1 -AACCTTTTTTAAAA-GTTGCCTTAGACAATGTCTATCCCAATCTTTTT-AAAGGTTGCCTTAGA
49809207 CAAGGTCTATCCC
63 CAAGGTCTATCCC
* * *
49809220 AA-ATTTTTTAAAAGGTTGCCTTCGAC--TGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA
1 AACCTTTTTTAAAA-GTTGCCTTAGACAAT-GTCTATCCCAATC-TTTTTAAAGGTTGCCTTAGA
*
49809282 CAAGGTCTATACC
63 CAAGGTCTATCCC
* * *
49809295 AACC-TTTTT-AAGGTTACCTTAGACGAT-TCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACA
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATC-TTTTTAAAGGTTGCCTTAGACA
49809357 AGGTCTATCCC
65 AGGTCTATCCC
* * * ** * **
49809368 AACTTTTTTTAAAGGTTTCCTTAGACAAAATCTATCCCAA-CTTTTTTAAAAGTTTATCTTAGAC
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATC-TTTTT-AAAGGTTGCCTTAGAC
*
49809432 -TGGTCTATCCC
64 AAGGTCTATCCC
* * * * *
49809443 AACC-TTTTT-AAGGTTGCCTTAAACGA-GCCTATCCCAACCTTTTTCAAAGGTTGGCCTT-GAC
1 AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATCTTTTT-AAAGGTT-GCCTTAGAC
* *
49809504 TAGGTCTTTCCC
64 AAGGTCTATCCC
49809516 AACC
1 AACC
49809520 CTTTAATAAG
Statistics
Matches: 489, Mismatches: 68, Indels: 64
0.79 0.11 0.10
Matches are distributed among these distances:
70 26 0.05
71 74 0.15
72 65 0.13
73 129 0.26
74 53 0.11
75 111 0.23
76 31 0.06
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (75 bp):
AACCTTTTTTAAAAGTTGCCTTAGACAATGTCTATCCCAATCTTTTTAAAGGTTGCCTTAGACAA
GGTCTATCCC
Found at i:49809052 original size:108 final size:106
Alignment explanation
Indices: 49808863--49809486 Score: 492
Period size: 108 Copynumber: 5.7 Consensus size: 106
49808853 TACCCTAACC
* * * * *
49808863 TTTTTAAGGTTGCCTTAGACGGGTTTATCCCAA-CTTTTTTTAAGTTGCCTTGGAAAAGGTCTAT
1 TTTTTAAGGTTGCCTTAGAC-GGTCTATCCCAACCTTTTTTAAAGTTGCCTTAGACAAGGCCTAT
* * * *
49808927 CCCAACCTTTTTAAGGTTGCTTTAAACGAGTCTATCCCAGCA
65 CCCAACCTTTTTAAGGTTACCTTAAACGAATCTATCCCAACA
* * * *
49808969 TTTTTAAGGTTGTCTTAGACAGGTCAATCCTAACCTTTTTTAAAAGTTGCCTTAGACAATGCCTA
1 TTTTTAAGGTTGCCTTAGAC-GGTCTATCCCAACCTTTTTT-AAAGTTGCCTTAGACAAGGCCTA
* * * * *
49809034 TCCTAATCTTTTTCAGGTTACCTTAGACGAATCTATCCCAACC
64 TCCCAACCTTTTTAAGGTTACCTTAAACGAATCTATCCCAACA
* * *
49809077 TTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTTTAAGGTTGCCTTAGAC-TGGTCTA
1 TTTTTAAGGTTGCCTTAGACG-GTCTATCCCAACC-TTTTTTAAAGTTGCCTTAGACAAGGCCTA
* * * * *
49809141 -CCCTAACATTTTTAAAAGGTTGCCTTAGAC-AAGTCTATCTCAACC
64 TCCC-AACCTTTTT--AAGGTTACCTTAAACGAA-TCTATCCCAACA
* * * *
49809186 TTTTTAAAAAGTTGCCTTAGACAAGGTCTATCCCAA-ATTTTTTAAAAGGTTGCCTTCGAC-TGG
1 TTTTT--AAGGTTGCCTTAGAC--GGTCTATCCCAACCTTTTTT-AAA-GTTGCCTTAGACAAGG
* * * * *
49809249 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC-AAGGTCTATACCAACC
60 CCTATCCCAACC-TTTTT-AAGGTTACCTTAAACGAA--TCTATCCCAACA
* * * *
49809299 TTTTTAAGGTTACCTTAGACGATTCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACAAGGTCTA
1 TTTTTAAGGTTGCCTTAGACG-GTCTATCCCAACCTTTTTTAAA-GTTGCCTTAGACAAGGCCTA
* * * * *
49809364 TCCCAACTTTTTTTAAAGGTTTCCTTAGACAAAATCTATCCCAACT
64 TCCCAAC-CTTTTT-AAGGTTACCTTAAAC-GAATCTATCCCAACA
* ** * * *
49809410 TTTTTAAAAGTTTATCTTAGACTGGTCTATCCCAACC-TTTTTAAGGTTGCCTTAAACGA-GCCT
1 TTTTT--AAGGTTGCCTTAGAC-GGTCTATCCCAACCTTTTTTAAAGTTGCCTTAGACAAGGCCT
49809473 ATCCCAACCTTTTT
63 ATCCCAACCTTTTT
49809487 CAAAGGTTGG
Statistics
Matches: 434, Mismatches: 58, Indels: 49
0.80 0.11 0.09
Matches are distributed among these distances:
106 30 0.07
107 19 0.04
108 98 0.23
109 41 0.09
110 42 0.10
111 95 0.22
112 57 0.13
113 51 0.12
114 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (106 bp):
TTTTTAAGGTTGCCTTAGACGGTCTATCCCAACCTTTTTTAAAGTTGCCTTAGACAAGGCCTATC
CCAACCTTTTTAAGGTTACCTTAAACGAATCTATCCCAACA
Found at i:49809362 original size:148 final size:146
Alignment explanation
Indices: 49808855--49809519 Score: 669
Period size: 148 Copynumber: 4.6 Consensus size: 146
49808845 AAACTTTTTA
* * *
49808855 CCCTAACCTTTTTAAGGTTGCCTTAGACGGGTT-TATCCCAA-CTTTTTTTAA-GTTGCCTTGGA
1 CCCTAACCTTTTTAAGGTTGCCTTAGAC-GATTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA
* * * * *
49808917 AAAGGTCTATCCCAACCTTTTTAAGGTTGCTTTAAACGAGTCTATCCC-AGCATTTTT-AAGGTT
65 CAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTTAAAGGTT
* *
49808980 GTCTTAGACAGGTCAAT
130 GCCTTAGACAGGTCTAT
* * * * * * *
49808997 -CCTAACCTTTTTTAAAAGTTGCCTTAGACAATGCCTATCCTAATC-TTTTT-CAGGTTACCTTA
1 CCCTAACC-TTTTT-AAGGTTGCCTTAGACGAT-TCTATCCCAACCTTTTTTAAAGGTTGCCTTA
*
49809059 GACGAA--TCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTTTAAG
63 GAC-AAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTTAAAG
*
49809122 GTTGCCTTAGACTGGTCTA-
127 GTTGCCTTAGACAGGTCTAT
* * * * * *
49809141 CCCTAACATTTTTAAAAGGTTGCCTTAGACAAGTCTATCTCAACCTTTTTAAAAAGTTGCCTTAG
1 CCCTAACCTTTTT--AAGGTTGCCTTAGACGATTCTATCCCAACCTTTTTTAAAGGTTGCCTTAG
** *
49809206 ACAAGGTCTATCCCAAATTTTTTAAAAGGTTGCCTTCGACTG-GTCTATCCCAACCTTTTTTAAA
64 ACAAGGTCTATCCCAACCTTTTT--AAGGTTGCCTTAGAC-GAGTCTATCCCAACCTTTTTTAAA
49809270 GGTTGCCTTAGACAAGGTCTAT
126 GGTTGCCTTAGAC-AGGTCTAT
* * *
49809292 ACC-AACCTTTTTAAGGTTACCTTAGACGATTCTATCCCAATCTTTTTTAAAGGTTGCCTTAGAC
1 CCCTAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC
* * * *
49809356 AAGGTCTATCCCAACTTTTTTTAAAGGTTTCCTTAGACAAAATCTATCCCAA-CTTTTTTAAAAG
66 AAGGTCTATCCCAAC-CTTTTT-AAGGTTGCCTTAGAC-GAGTCTATCCCAACCTTTTTT-AAAG
* ** *
49809420 TTTATCTTAGACTGGTCTAT
127 GTTGCCTTAGACAGGTCTAT
* ** *
49809440 CCC-AACCTTTTTAAGGTTGCCTTAAACGAGCCTATCCCAACCTTTTTCAAAGGTTGGCCTT-GA
1 CCCTAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGA
* *
49809503 CTAGGTCTTTCCCAACC
65 CAAGGTCTATCCCAACC
49809520 CTTTAATAAG
Statistics
Matches: 438, Mismatches: 61, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
141 7 0.02
142 6 0.01
143 56 0.13
144 41 0.09
145 51 0.12
146 12 0.03
147 15 0.03
148 151 0.34
149 82 0.19
150 15 0.03
151 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (146 bp):
CCCTAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC
AAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTTAAAGGTTG
CCTTAGACAGGTCTAT
Found at i:49809519 original size:38 final size:38
Alignment explanation
Indices: 49808859--49809519 Score: 603
Period size: 37 Copynumber: 18.1 Consensus size: 38
49808849 TTTTTACCCT
* *
49808859 AACC-TTTTT-AAGGTTGCCTTAGAC-GGGTTTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49808894 AA-CTTTTTTTAA-GTTGCCTTGGAAAAGGTCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49808930 AACC-TTTTT-AAGGTTGCTTTAAACGA-GTCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * * * *
49808965 -AGCATTTTT-AAGGTTGTCTTAGAC-AGGTCAATCCT
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * * *
49809000 AACCTTTTTTAAAAGTTGCCTTAGACAATGCCTATCCT
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49809038 AATC-TTTTT-CAGGTTACCTTAGACGAA--TCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGAC-AAGGTCTATCCC
*
49809073 AACC-TTTTT-AAGGTTGCCTTAGACGA-GTCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* *
49809108 AACCTTTTTTTAAGGTTGCCTTAGAC-TGGTCTA-CCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49809144 TAACATTTTTAAAAGGTTGCCTTAGACAA-GTCTATCTC
1 -AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* *
49809182 AACCTTTTTAAAAAGTTGCCTTAGACAAGGTCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49809220 AA-ATTTTTTAAAAGGTTGCCTTCGAC-TGGTCTATCCC
1 AACCTTTTTT-AAAGGTTGCCTTAGACAAGGTCTATCCC
*
49809257 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATACC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49809295 AACC-TTTTT-AAGGTTACCTTAGACGA-TTCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
*
49809330 AATCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * **
49809368 AACTTTTTTTAAAGGTTTCCTTAGACAAAATCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* ** *
49809406 AA-CTTTTTTAAAAGTTTATCTTAGAC-TGGTCTATCCC
1 AACCTTTTTT-AAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49809443 AACC-TTTTT-AAGGTTGCCTTAAACGA-GCCTATCCC
1 AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
* * *
49809478 AACCTTTTTCAAAGGTTGGCCTT-GACTAGGTCTTTCCC
1 AACCTTTTTTAAAGGTT-GCCTTAGACAAGGTCTATCCC
49809516 AACC
1 AACC
49809520 CTTTAATAAG
Statistics
Matches: 513, Mismatches: 81, Indels: 61
0.78 0.12 0.09
Matches are distributed among these distances:
34 5 0.01
35 124 0.24
36 78 0.15
37 177 0.35
38 129 0.25
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (38 bp):
AACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCC
Found at i:49812121 original size:15 final size:15
Alignment explanation
Indices: 49812103--49812144 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
49812093 TTCTCAGTTG
49812103 TCTTCTTCTTCG-CTT
1 TCTTCTTCTTCGTC-T
*
49812118 TCTTCGTCTTCGTCT
1 TCTTCTTCTTCGTCT
49812133 TCTTCTTCTTCG
1 TCTTCTTCTTCG
49812145 GTGATTGCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 23 0.96
16 1 0.04
ACGTcount: A:0.00, C:0.33, G:0.10, T:0.57
Consensus pattern (15 bp):
TCTTCTTCTTCGTCT
Found at i:49817684 original size:24 final size:23
Alignment explanation
Indices: 49817649--49817702 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
49817639 TAGTTGCATG
*
49817649 TTTTATAAGTAATAAATATTTTTA
1 TTTT-TAAGTAATAAATAATTTTA
*
49817673 TTTTTAATGTAATAATTAATTTTA
1 TTTTTAA-GTAATAAATAATTTTA
*
49817697 CTTTTA
1 TTTTTA
49817703 TATAATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 3 0.12
24 23 0.88
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTTTAAGTAATAAATAATTTTA
Found at i:49819491 original size:23 final size:23
Alignment explanation
Indices: 49819465--49819514 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
49819455 AGCATTATGT
*
49819465 CATTTTAGTGCAATTCATTTTGC
1 CATTATAGTGCAATTCATTTTGC
*
49819488 CATTATAGTGCAATTCATTTTGG
1 CATTATAGTGCAATTCATTTTGC
49819511 CATT
1 CATT
49819515 CGATACATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.46
Consensus pattern (23 bp):
CATTATAGTGCAATTCATTTTGC
Found at i:49819736 original size:21 final size:23
Alignment explanation
Indices: 49819692--49819738 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
49819682 TGAAAAGGAT
49819692 ACGTCATTCTAAATTGTGGATAA
1 ACGTCATTCTAAATTGTGGATAA
*
49819715 ACGTCATTCTCAA-TGT-GATAA
1 ACGTCATTCTAAATTGTGGATAA
49819736 ACG
1 ACG
49819739 AGCATCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
22 3 0.13
23 12 0.52
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (23 bp):
ACGTCATTCTAAATTGTGGATAA
Found at i:49824134 original size:12 final size:12
Alignment explanation
Indices: 49824117--49824146 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
49824107 CCTCACACCC
49824117 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
49824129 CCGTGTGCTAGG
1 CCGTGTGCCAGG
49824141 CCGTGT
1 CCGTGT
49824147 AACTTTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:49831986 original size:51 final size:52
Alignment explanation
Indices: 49831931--49832038 Score: 166
Period size: 51 Copynumber: 2.1 Consensus size: 52
49831921 TTTCATTTTT
49831931 CATTTTTATTTTGGAGAAAACCA-AATTCATTTCCAAATGATTCC-ATTTCTC
1 CATTTTTATTTTGGAGAAAACCATAA-TCATTTCCAAATGATTCCTATTTCTC
* * *
49831982 CATTTTTATTTTGGAGAAAACCATAATCATTTGCAAATGTTTCCTATTTTTC
1 CATTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCTATTTCTC
49832034 CATTT
1 CATTT
49832039 CACCATTTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
51 39 0.75
52 13 0.25
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (52 bp):
CATTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCTATTTCTC
Found at i:49841547 original size:20 final size:20
Alignment explanation
Indices: 49841513--49841554 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49841503 AACTATTTAA
** *
49841513 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
49841533 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
49841553 AT
1 AT
49841555 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:49842385 original size:49 final size:49
Alignment explanation
Indices: 49842252--49842386 Score: 139
Period size: 49 Copynumber: 2.7 Consensus size: 49
49842242 GTAAAGAGAT
* * * * *
49842252 CCCATGTAAGACCATGTCTGAGACATGGCATGGGCACCGATATGAGAACT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAAAAGAGAACC
* * * *
49842302 CCCATGTAAGACTATATCTGGGATATGACATTGGCA-GTAAAAGA-AACAC
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-AAAAGAGAAC-C
*
49842351 CCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
49842387 TGTTATTATC
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
48 4 0.06
49 35 0.51
50 30 0.43
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (49 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAAAAGAGAACC
Found at i:49846101 original size:26 final size:26
Alignment explanation
Indices: 49846072--49846124 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
49846062 CTTTCCGAAC
49846072 TAGGTATGGTCACTATGAGTTTCTTG
1 TAGGTATGGTCACTATGAGTTTCTTG
49846098 TAGGTATGGTCACTATGAGTTTCTTG
1 TAGGTATGGTCACTATGAGTTTCTTG
49846124 T
1 T
49846125 GATTCCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.43
Consensus pattern (26 bp):
TAGGTATGGTCACTATGAGTTTCTTG
Found at i:49849845 original size:56 final size:50
Alignment explanation
Indices: 49849749--49849995 Score: 205
Period size: 50 Copynumber: 4.8 Consensus size: 50
49849739 ATTTGGGTAA
* * *
49849749 AGAGATCCCATGTAAGACCATGTCTGGGACTTGACATTGGCATCATTAAAGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C---AAAG--ATG
* **
49849805 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATG
* * ** *
49849855 AGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATG
** * * *
49849905 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACAAGA--
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CA-AAGATG
** * *
49849955 A-ACATCCCATGTAAGACCATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
49849996 TGTTATTATC
Statistics
Matches: 161, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
49 36 0.22
50 80 0.50
51 2 0.01
52 4 0.02
55 1 0.01
56 38 0.24
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACAAAGATG
Found at i:49849857 original size:50 final size:50
Alignment explanation
Indices: 49849802--49849995 Score: 214
Period size: 50 Copynumber: 3.9 Consensus size: 50
49849792 CATTAAAGTT
* *
49849802 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAC
* * *
49849852 ATGAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAC
** * *
49849902 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AC
* * ** * *
49849951 AAGAAACATCCCATGTAAGACCATGTCTGGGACATAGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
49849996 TGTTATTATC
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 40 0.33
50 79 0.65
51 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAC
Found at i:49855288 original size:20 final size:20
Alignment explanation
Indices: 49855254--49855295 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49855244 AACTATTTAA
** *
49855254 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
49855274 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
49855294 AT
1 AT
49855296 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:49868690 original size:35 final size:35
Alignment explanation
Indices: 49868644--49868720 Score: 154
Period size: 35 Copynumber: 2.2 Consensus size: 35
49868634 AGCGCTCCTA
49868644 CATTATACCAATAGAATGTAACCAAGAATATTGTG
1 CATTATACCAATAGAATGTAACCAAGAATATTGTG
49868679 CATTATACCAATAGAATGTAACCAAGAATATTGTG
1 CATTATACCAATAGAATGTAACCAAGAATATTGTG
49868714 CATTATA
1 CATTATA
49868721 ACAAGGAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (35 bp):
CATTATACCAATAGAATGTAACCAAGAATATTGTG
Found at i:49868746 original size:4 final size:4
Alignment explanation
Indices: 49868737--49868822 Score: 154
Period size: 4 Copynumber: 21.5 Consensus size: 4
49868727 AATAAAGATA
*
49868737 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
49868785 GTGT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
49868823 GAAGAATTGG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 78 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:49883343 original size:11 final size:11
Alignment explanation
Indices: 49883321--49883360 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
49883311 AACTAATCCT
49883321 CTCTCAAATTTC
1 CTCTC-AATTTC
49883333 CTCTCAATTTC
1 CTCTCAATTTC
49883344 CTCTCAATTTC
1 CTCTCAATTTC
49883355 CT-TCAA
1 CTCTCAA
49883361 AAATTCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 4 0.14
11 19 0.68
12 5 0.18
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:49884406 original size:21 final size:20
Alignment explanation
Indices: 49884367--49884404 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49884357 TAACGAGGTA
49884367 AATTTTATATTAGATTTTAC
1 AATTTTATATTAGATTTTAC
49884387 AATTATTATA-TAGATTTT
1 AATT-TTATATTAGATTTT
49884405 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
AATTTTATATTAGATTTTAC
Found at i:49885835 original size:23 final size:23
Alignment explanation
Indices: 49885809--49886376 Score: 597
Period size: 23 Copynumber: 25.8 Consensus size: 23
49885799 ATTAATATCC
49885809 TTAACTT-AAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* *
49885831 TTTAA-TT-AAAACCTTAAACC--C
1 -TTAACTTAAAAACCCT-AACCTAA
49885852 TTAACTTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* * *
49885875 TTAAATTAAAAACTCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
49885896 TTAACTT-AAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* **
49885918 TTAAATTAAAAACCCTAACC-CC
1 TTAACTTAAAAACCCTAACCTAA
49885940 TTAACTTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* *
49885963 TTAAATTAAAAACCCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
* *
49885984 TTAACTTAAAATCCCGAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* *
49886007 TTAAATTAAAAACCCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
*
49886028 TTAAATTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* *
49886051 TTAAATTAAAAACCCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
*
49886072 TTAACTTAAAAACTCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
49886095 TTAACTTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
49886118 TTAACTTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
49886141 TTAACTTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
* *
49886164 TTAAATT-AAAACCCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
*
49886184 TTAACTTAAAAACTCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
49886207 TTTAA-TTAAAAACCCTAAACCCTAA
1 -TTAACTTAAAAACCCT-AA-CCTAA
* *
49886232 --AA-TTAAAAACACTAACCT-G
1 TTAACTTAAAAACCCTAACCTAA
*
49886251 TT-ACTTAAAAACCCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
49886271 TTAACTTAAAAACCCTAACCCT--
1 TTAACTTAAAAACCCTAA-CCTAA
* *
49886293 TTAACTTAAAAACACTAAACC--C
1 TTAACTTAAAAACCCT-AACCTAA
*
49886315 TTAACTTAAAAACCCTAACC--C
1 TTAACTTAAAAACCCTAACCTAA
49886336 TTAACTTAAAAACCCTAACCTAA
1 TTAACTTAAAAACCCTAACCTAA
*
49886359 TTAAATTAAAAACCCTAA
1 TTAACTTAAAAACCCTAA
49886377 ACGAAATTAA
Statistics
Matches: 468, Mismatches: 46, Indels: 62
0.81 0.08 0.11
Matches are distributed among these distances:
20 27 0.06
21 134 0.29
22 99 0.21
23 197 0.42
24 6 0.01
25 5 0.01
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (23 bp):
TTAACTTAAAAACCCTAACCTAA
Found at i:49885872 original size:44 final size:44
Alignment explanation
Indices: 49885807--49886376 Score: 702
Period size: 44 Copynumber: 13.0 Consensus size: 44
49885797 CCATTAATAT
* *
49885807 CCTTAACTT-AAAACCCTAACCTAATTTAATT-AAAACCTTAAAC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AAC
*
49885850 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACTCTAAC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
49885894 CCTTAACTT-AAAACCCTAACCTAATTAAATTAAAAACCCTAACC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-C
49885938 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
* *
49885982 CCTTAACTTAAAATCCCGAACCTAATTAAATTAAAAACCCTAAC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
*
49886026 CCTTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
* *
49886070 CCTTAACTTAAAAACTCTAACCTAATTAACTTAAAAACCCTAAC
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
* *
49886114 CTAATTAACTTAAAAACCCTAACCTAATTAACTTAAAAACCCTAAC
1 C--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
* * * * *
49886160 CTAATTAAATT-AAAACCCTAACC--CTTAACTTAAAAACTCTAAC
1 C--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
* *
49886203 CTAATTTAA-TTAAAAACCCTAAACCCT-A--AAATTAAAAACACTAA-
1 C---CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAAC
* * *
49886247 CCTGTTACTTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAC
1 CCT-TAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
* * *
49886290 CCTTTAACTTAAAAACACTAAACC--CTTAACTTAAAAACCCTAAC
1 CC-TTAACTTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAAC
49886334 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA
1 CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA
49886377 ACGAAATTAA
Statistics
Matches: 475, Mismatches: 32, Indels: 39
0.87 0.06 0.07
Matches are distributed among these distances:
41 3 0.01
42 22 0.05
43 103 0.22
44 227 0.48
45 67 0.14
46 53 0.11
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.26
Consensus pattern (44 bp):
CCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
Found at i:49886506 original size:27 final size:26
Alignment explanation
Indices: 49886442--49886510 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
49886432 CTGGTACTAA
*
49886442 CAATTAATAATTTTATATAATTTGAT
1 CAATTAATAATTTTATACAATTTGAT
*
49886468 -AATTTTACTAATTATTAATACAATTT-AT
1 CAA--TTAATAATT-TT-ATACAATTTGAT
49886496 CAATTAATAATTTTA
1 CAATTAATAATTTTA
49886511 CATTCACATA
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
25 3 0.09
26 2 0.06
27 16 0.46
28 4 0.11
29 10 0.29
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.49
Consensus pattern (26 bp):
CAATTAATAATTTTATACAATTTGAT
Found at i:49886587 original size:115 final size:117
Alignment explanation
Indices: 49886381--49886624 Score: 402
Period size: 116 Copynumber: 2.1 Consensus size: 117
49886371 CCCTAAACGA
* * * **
49886381 AATTAATAATTTTACTTTCACATAATGTTGGATTTGGAAAAATATTTTTTCCTGGTACTAACAAT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATAGTTTTGACTGGTACTAACAAT
* **
49886446 TAATAATTTTATATAATTTGATAA-TTTTACTAATTATTAATACAATTTATC
66 TAATAATTTTATATAATTTGACAATTTTTACTAACCATTAATACAATTTATC
49886497 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAAT-GTTTTGACTGGTACTAACAAT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATAGTTTTGACTGGTACTAACAAT
49886561 TAATAATTTTATATAATTTGACAATTTTTACTAACCATTAATACAATTTATC
66 TAATAATTTTATATAATTTGACAATTTTTACTAACCATTAATACAATTTATC
49886613 AATTAATAATTT
1 AATTAATAATTT
49886625 CACAAACTTA
Statistics
Matches: 119, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
115 41 0.34
116 78 0.66
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (117 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATAGTTTTGACTGGTACTAACAAT
TAATAATTTTATATAATTTGACAATTTTTACTAACCATTAATACAATTTATC
Found at i:49889961 original size:124 final size:124
Alignment explanation
Indices: 49889634--49890004 Score: 571
Period size: 125 Copynumber: 3.0 Consensus size: 124
49889624 CCCAAACATG
* * * *
49889634 CTACTGTAGCAAAAGCGCATCCACGAGGGCACGGTTTTCACAAATTCTTCTCAAATAGCATCCTC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGC-CCGATTTCACAAATTCTTCTCAAATAGCATCCTG
*
49889699 CTAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAAAAAAATTATTTCTTCCATAAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATAAC
*
49889759 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTGTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCCCGATT-TCACAAATTCTTCTCAAATAGCATCCTG
* * *
49889824 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTTCATGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATAAC
* * *
49889884 CTACTGTAGTAAAAGTGCGTCCACTAGGGCCCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCCCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* ***
49889949 TAGAAGCGATTTTATACTATTTGATCAGAAACGTCAACTCGAAATTATTTCTTCCA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA-AAAAAATTATTTCTTCCA
49890005 GGACTTAAAA
Statistics
Matches: 225, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
124 68 0.30
125 157 0.70
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCCCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTCCATAAC
Found at i:49890588 original size:14 final size:14
Alignment explanation
Indices: 49890569--49890600 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
49890559 TTCATTAATC
49890569 TTTTCTCTCAATTT
1 TTTTCTCTCAATTT
*
49890583 TTTTCTCTTAATTT
1 TTTTCTCTCAATTT
49890597 TTTT
1 TTTT
49890601 ATCATAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTCTCTCAATTT
Found at i:49896557 original size:45 final size:42
Alignment explanation
Indices: 49896456--49896548 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
49896446 GCTCTCGGTA
*
49896456 TCGCACACTTAGTGCCCGTTATTCAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
** *
49896498 TCTTACACTTAGTGCCCATTATTCAACATCATCATTTTAGTT
1 TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
49896540 TCGCACACT
1 TCGCACACT
49896549 ATTTAGTGCT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.39
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATTCAACATCATCATTTTAATT
Found at i:49904092 original size:117 final size:117
Alignment explanation
Indices: 49903884--49904094 Score: 316
Period size: 117 Copynumber: 1.8 Consensus size: 117
49903874 TTTGATTTGT
* * * * *
49903884 TGGTTATTTGTGATTTATTATTGCAATTTCAGTGTCACAATGTAGGGTTTGTTTTATCAATTTTT
1 TGGTTAATTGTGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTATCAATCTGT
*
49903949 GCTACGACAGTGGTCCCGATGTTGTTGATAAAACTATTGTCAAAATTACAGA
66 GATACGACAGTGGTCCCGATGTTGTTGATAAAACTATTGTCAAAATTACAGA
* *
49904001 TGGTTAATTGTGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTGTCCATCTGT
1 TGGTTAATTGTGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTATCAATCTGT
* *
49904066 GATGCGACAGTGGTCCTGAT-TATGTTGAT
66 GATACGACAGTGGTCCCGATGT-TGTTGAT
49904095 TTCTGTTACC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 1 0.01
117 82 0.99
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (117 bp):
TGGTTAATTGTGATTTATTATTGCAATTTCAATGCCACAATGTAGGGTTTGTTTTATCAATCTGT
GATACGACAGTGGTCCCGATGTTGTTGATAAAACTATTGTCAAAATTACAGA
Found at i:49907568 original size:33 final size:32
Alignment explanation
Indices: 49907501--49907676 Score: 124
Period size: 33 Copynumber: 5.3 Consensus size: 32
49907491 TATTAACTAC
49907501 TGGGGAGGGTGATGTTGAAAG-GGT-GAAAGT-TGA
1 TGGGGAGGGTGATG-T-AAAGAGGTAG-AA-TCTGA
*
49907534 TGGGGAGGGTGATGATAAAGGGGTAGAATCTGA
1 TGGGGAGGGTGATG-TAAAGAGGTAGAATCTGA
* * * * *
49907567 TGGTGAAGGTGATCTAAAAAAGGTAGAATCTGG
1 TGGGGAGGGTGATGT-AAAGAGGTAGAATCTGA
* * * * *
49907600 TGGGGAGGGTGATGTAGGAGTGGTACAAGCTAA
1 TGGGGAGGGTGATGTA-AAGAGGTAGAATCTGA
* * * *
49907633 TGGGGAGGGCGATGTAGGAGAGGTACAAGCTGA
1 TGGGGAGGGTGATGTA-AAGAGGTAGAATCTGA
49907666 TGGGGAGGGTG
1 TGGGGAGGGTG
49907677 TGTCTGCTAC
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
32 7 0.06
33 109 0.93
34 1 0.01
ACGTcount: A:0.28, C:0.05, G:0.46, T:0.21
Consensus pattern (32 bp):
TGGGGAGGGTGATGTAAAGAGGTAGAATCTGA
Found at i:49911631 original size:32 final size:32
Alignment explanation
Indices: 49911594--49911667 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
49911584 TTTGGTTCTA
*
49911594 AGGGATTTCATAATTTCATTCCTAATAGTTTT
1 AGGGATTTCATAATTTCATTCCTAAAAGTTTT
* * * * *
49911626 AGGGATTTAATGATTTGATTCGTAAAATTTTT
1 AGGGATTTCATAATTTCATTCCTAAAAGTTTT
49911658 AGGGATTTCA
1 AGGGATTTCA
49911668 AGAATATTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.45
Consensus pattern (32 bp):
AGGGATTTCATAATTTCATTCCTAAAAGTTTT
Found at i:49913957 original size:27 final size:26
Alignment explanation
Indices: 49913927--49914007 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 26
49913917 GACTTTATCT
*
49913927 TATTTTATTTTTCAATTATTTAAAATG
1 TATTTTATTTTT-AATTATTTAAAATA
* *
49913954 TA-TTTATCTTTTATAATATATAATAA-A
1 TATTTTAT-TTTTA-ATTATTTAA-AATA
49913981 TATATTTATTTTTTAATTATTTAAAAT
1 TAT-TTTA-TTTTTAATTATTTAAAAT
49914008 TTGCATCGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 13
0.70 0.08 0.22
Matches are distributed among these distances:
26 6 0.14
27 17 0.40
28 9 0.21
29 9 0.21
30 1 0.02
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.58
Consensus pattern (26 bp):
TATTTTATTTTTAATTATTTAAAATA
Found at i:49918662 original size:26 final size:26
Alignment explanation
Indices: 49918631--49918688 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
49918621 CAACAACAGT
49918631 GATCAAAATAGTAGCACCTCTACAAC
1 GATCAAAATAGTAGCACCTCTACAAC
*
49918657 GATCAAAGTAGTAGCACCTCTACAAC
1 GATCAAAATAGTAGCACCTCTACAAC
49918683 GATCAA
1 GATCAA
49918689 TGAACAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.41, C:0.26, G:0.14, T:0.19
Consensus pattern (26 bp):
GATCAAAATAGTAGCACCTCTACAAC
Found at i:49919610 original size:21 final size:20
Alignment explanation
Indices: 49919564--49919613 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
49919554 ACCTCTATTC
49919564 ATGTTTGTTTGTTTAGTTTT
1 ATGTTTGTTTGTTTAGTTTT
*
49919584 AAGTTTGTTTGTGTTCAG-TTT
1 ATGTTTGTTTGT-TT-AGTTTT
49919605 ATGTTTGTT
1 ATGTTTGTT
49919614 AAGAATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 11 0.42
21 13 0.50
22 2 0.08
ACGTcount: A:0.12, C:0.02, G:0.22, T:0.64
Consensus pattern (20 bp):
ATGTTTGTTTGTTTAGTTTT
Found at i:49919700 original size:12 final size:12
Alignment explanation
Indices: 49919683--49919707 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49919673 TTGTTTAATG
49919683 TTCATGAACATA
1 TTCATGAACATA
49919695 TTCATGAACATA
1 TTCATGAACATA
49919707 T
1 T
49919708 AATTGAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TTCATGAACATA
Found at i:49920880 original size:18 final size:18
Alignment explanation
Indices: 49920853--49920889 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
49920843 GCTATCAGTT
*
49920853 TCGATTTAACCAATTTGA
1 TCGATCTAACCAATTTGA
*
49920871 TCGATCTAACCAGTTTGA
1 TCGATCTAACCAATTTGA
49920889 T
1 T
49920890 TGAATAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (18 bp):
TCGATCTAACCAATTTGA
Found at i:49923618 original size:21 final size:22
Alignment explanation
Indices: 49923577--49923619 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
49923567 TTTATTTTTA
49923577 AAAATATTTAAATTATTAATAT
1 AAAATATTTAAATTATTAATAT
* *
49923599 AAAATA-TTATATTTTTAATAT
1 AAAATATTTAAATTATTAATAT
49923620 TATTAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAATATTTAAATTATTAATAT
Found at i:49923700 original size:19 final size:18
Alignment explanation
Indices: 49923659--49923719 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
49923649 TTTAGTCATA
*
49923659 TAATAAATTATTAATATAAT
1 TAATAAATTATT--TATATT
49923679 TAATATAATT-TATTATATT
1 TAATA-AATTAT-TTATATT
49923698 TAATAAATTATTTAATATT
1 TAATAAATTATTT-ATATT
49923717 TAA
1 TAA
49923720 ATTTTATTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
18 6 0.17
19 19 0.53
20 6 0.17
21 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATAAATTATTTATATT
Found at i:49925108 original size:13 final size:13
Alignment explanation
Indices: 49925071--49925111 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
49925061 TTTTGCTTTA
49925071 CTGCTTTGCTCTG
1 CTGCTTTGCTCTG
49925084 CT--TTGTGCCTCTG
1 CTGCTT-TG-CTCTG
49925097 CTGCTTTGCTCTG
1 CTGCTTTGCTCTG
49925110 CT
1 CT
49925112 TTGCTTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
11 2 0.08
12 2 0.08
13 16 0.67
14 2 0.08
15 2 0.08
ACGTcount: A:0.00, C:0.32, G:0.22, T:0.46
Consensus pattern (13 bp):
CTGCTTTGCTCTG
Found at i:49928093 original size:18 final size:18
Alignment explanation
Indices: 49928067--49928132 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
49928057 AAAATATGAG
*
49928067 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
*
49928085 AAATCATGTTCACATTTC
1 AAATGATGTTCACATTTC
49928103 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
49928121 AAATGATGTTCA
1 AAATGATGTTCA
49928133 AATTGATGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:49928620 original size:72 final size:71
Alignment explanation
Indices: 49928528--49928699 Score: 254
Period size: 72 Copynumber: 2.4 Consensus size: 71
49928518 AACAACAATG
* * * * *
49928528 CTAAACTAATTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTCCTTA
1 CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
*
49928593 TTTATGT
66 TTTAT-A
* * *
49928600 GTAATTTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
49928665 TTTATA
66 TTTATA
49928671 CTAAATTAGTTTTATCAATAGTTGTTTAT
1 CTAAATTAGTTTTATCAATAGTTGTTTAT
49928700 ATATGATTTT
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
71 26 0.30
72 62 0.70
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (71 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTA
TTTATA
Found at i:49930499 original size:19 final size:19
Alignment explanation
Indices: 49930471--49930514 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
49930461 TAATTTTTAT
49930471 ATTTAAATATT-TAAATATA
1 ATTTAAATATTCTAAATA-A
* *
49930490 ATTTATATATTCTAATTAA
1 ATTTAAATATTCTAAATAA
49930509 ATTTAA
1 ATTTAA
49930515 TAATTAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTAAATATTCTAAATAA
Found at i:49930767 original size:23 final size:23
Alignment explanation
Indices: 49930740--49930785 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
49930730 AACACTTAAA
49930740 TTTTTCAAAAGCACTTCTCAAAAT
1 TTTTTCAAAA-CACTTCTCAAAAT
* *
49930764 TTTTTCACAACACTTTTCAAAA
1 TTTTTCAAAACACTTCTCAAAA
49930786 ATACTTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.39
Consensus pattern (23 bp):
TTTTTCAAAACACTTCTCAAAAT
Found at i:49930791 original size:13 final size:13
Alignment explanation
Indices: 49930775--49930799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49930765 TTTTCACAAC
49930775 ACTTTTCAAAAAT
1 ACTTTTCAAAAAT
49930788 ACTTTTCAAAAA
1 ACTTTTCAAAAA
49930800 CAACGAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTTTTCAAAAAT
Found at i:49940004 original size:21 final size:21
Alignment explanation
Indices: 49939980--49940020 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49939970 AAACACTCGT
*
49939980 TTTCCTTTTTCAATTGAACCA
1 TTTCCTTTTCCAATTGAACCA
*
49940001 TTTCCTTTTCCATTTGAACC
1 TTTCCTTTTCCAATTGAACC
49940021 CTAATATCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.27, G:0.05, T:0.49
Consensus pattern (21 bp):
TTTCCTTTTCCAATTGAACCA
Found at i:49948946 original size:41 final size:42
Alignment explanation
Indices: 49948901--49948984 Score: 143
Period size: 44 Copynumber: 2.0 Consensus size: 42
49948891 AACTGTCAGC
49948901 TAATTAACAAC-TAACAAATTAACTGACTTAATCAGTTACTT
1 TAATTAACAACATAACAAATTAACTGACTTAATCAGTTACTT
49948942 TAATTAACAACTAATAACAAATTAACTGACTTAATCAGTTACT
1 TAATTAACAAC--ATAACAAATTAACTGACTTAATCAGTTACT
49948985 CTAACATTCC
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
41 11 0.28
44 29 0.73
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (42 bp):
TAATTAACAACATAACAAATTAACTGACTTAATCAGTTACTT
Found at i:49954372 original size:31 final size:29
Alignment explanation
Indices: 49954302--49954372 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 29
49954292 ATTAATATAT
49954302 AGTA-AAATT-ATCTTTTAAAAATATAAA
1 AGTATAAATTAATCTTTTAAAAATATAAA
* * *
49954329 AGTATGATTTAATCTTTTTAAAAGTTATAAA
1 AGTATAAATTAATC-TTTTAAAA-ATATAAA
*
49954360 GGTATAAATTAAT
1 AGTATAAATTAAT
49954373 ACAATAGAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 4 0.12
28 3 0.09
29 3 0.09
30 8 0.24
31 16 0.47
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (29 bp):
AGTATAAATTAATCTTTTAAAAATATAAA
Found at i:49961397 original size:31 final size:31
Alignment explanation
Indices: 49961354--49961419 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
49961344 ATGACTTTCA
* * *
49961354 ACTTCCTGCTTCTTTCTTCACTATTAGTTTG
1 ACTTACTGCTTCTTTCTTCACTATCAGTTCG
*
49961385 ACTTACTGCTTCTTTCTTCATTATCAGTTCG
1 ACTTACTGCTTCTTTCTTCACTATCAGTTCG
49961416 ACTT
1 ACTT
49961420 TCTGATACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.15, C:0.26, G:0.09, T:0.50
Consensus pattern (31 bp):
ACTTACTGCTTCTTTCTTCACTATCAGTTCG
Found at i:49961846 original size:16 final size:16
Alignment explanation
Indices: 49961804--49961846 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
49961794 TAATTTATTA
*
49961804 AATAAAA-ATAATTTT
1 AATAAAATATTATTTT
49961819 AATTAAAATATTATTTT
1 AA-TAAAATATTATTTT
49961836 AATAAAATATT
1 AATAAAATATT
49961847 TAAATTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 2 0.08
16 14 0.56
17 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAAAATATTATTTT
Found at i:49963701 original size:3 final size:3
Alignment explanation
Indices: 49963693--49963735 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
49963683 GTCTATAGGT
49963693 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
49963736 AATGACAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49965435 original size:101 final size:100
Alignment explanation
Indices: 49965315--49965793 Score: 617
Period size: 101 Copynumber: 4.8 Consensus size: 100
49965305 GTTTAACTAT
* * * * *
49965315 AATGTCGAGG-AAACAAGATCCGCCGTCGTGGCTTCAATCTGTTTCTACTACACCACCAAGAAAG
1 AATGTCG-GGAAAACCAGATCCGCCGTCGTAGCTTCAATCTG-TTCCACTACACCGCCAGGAAAG
* * * ** * * *
49965379 TAAGATTCGTCATTGTAACCTCAATCTTTTTAACTGT
64 TAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
*
49965416 AATGTTGGGAAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCTACTACACCGCCAAGG-AAG
1 AATGTCGGGAAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCC-ACTACACCGCC-AGGAAAG
49965480 TAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
64 TAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* * * *
49965517 AATGTCGGGGAAAACTAGATCCGTCGCCGTAGCTTCAATCTGTTCCACTACATCGCCAGGGAAA-
1 AATGTC-GGGAAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA-GGAAAG
49965581 TAAGATCCGCCGTTGTGGCTTCAAT-TTTTTAAATTGC
64 TAAGATCCGCCGTTGTGGCTTCAATCTTTTT-AATTGC
* *
49965618 AATGTCGGGGAAACCAGAT-CGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTA
1 AATGTCGGGAAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGAAAGTA
* *
49965682 AGATCCGCCGTTGTGGCTTCAATATTTTAAATTGC
66 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* * * *
49965717 AATGTTGGGGAAACCAGATCCGCCTTCGTAGCTTCAATCTGTTCCACTACACCACCAGGAAAGTA
1 AATGTCGGGAAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGAAAGTA
*
49965782 AGATCCACCGTT
66 AGATCCGCCGTT
49965794 TTCAACCTAC
Statistics
Matches: 337, Mismatches: 31, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
98 4 0.01
99 83 0.25
100 79 0.23
101 131 0.39
102 40 0.12
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (100 bp):
AATGTCGGGAAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGAAAGTA
AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
Found at i:49965629 original size:50 final size:50
Alignment explanation
Indices: 49965475--49965756 Score: 203
Period size: 50 Copynumber: 5.6 Consensus size: 50
49965465 ACACCGCCAA
* * *
49965475 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGG
1 GGAAATAAGATCCGCCGTTGTAGCTTCAATCTTTTAAATTGCAATGTCGG
* ** * ** * * * *
49965525 GGAAA-ACTAGATCCGTCGCCGTAGCTTCAATCTGTTCCACTAC-ATCGCCAG
1 GGAAATA--AGATCCGCCGTTGTAGCTTCAATCTTTTAAATTGCAAT-GTCGG
* *
49965576 GGAAATAAGATCCGCCGTTGTGGCTTCAATTTTTTAAATTGCAATGTCGG
1 GGAAATAAGATCCGCCGTTGTAGCTTCAATCTTTTAAATTGCAATGTCGG
** * * ** * * ** * *
49965626 GGAAACCAGAT-CGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAG
1 GGAAATAAGATCCGCCGTTGTAGCTTCAATCTTTTAAATTGCAATGTCGG
* * * *
49965675 GGAAGTAAGATCCGCCGTTGTGGCTTCAATATTTTAAATTGCAATGTTGG
1 GGAAATAAGATCCGCCGTTGTAGCTTCAATCTTTTAAATTGCAATGTCGG
**
49965725 GGAAACCAGATCCGCC-TTCGTAGCTTCAATCT
1 GGAAATAAGATCCGCCGTT-GTAGCTTCAATCT
49965757 GTTCCACTAC
Statistics
Matches: 166, Mismatches: 59, Indels: 14
0.69 0.25 0.06
Matches are distributed among these distances:
49 37 0.22
50 92 0.55
51 36 0.22
52 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (50 bp):
GGAAATAAGATCCGCCGTTGTAGCTTCAATCTTTTAAATTGCAATGTCGG
Found at i:49965921 original size:88 final size:88
Alignment explanation
Indices: 49965793--49966010 Score: 391
Period size: 88 Copynumber: 2.5 Consensus size: 88
49965783 GATCCACCGT
* * *
49965793 TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATCTTTGATCTACTTCGCTGTCAG
1 TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTACTTCGCCGTCAG
49965858 TACAGGAAGGCAAGATCTGTCAA
66 TACAGGAAGGCAAGATCTGTCAA
*
49965881 TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCGCCGTCAG
1 TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTACTTCGCCGTCAG
*
49965946 TACAGGAAGGCAAGATCTGTCAT
66 TACAGGAAGGCAAGATCTGTCAA
49965969 TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTA
1 TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTA
49966011 GTCATTACTC
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 125 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (88 bp):
TTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTACTTCGCCGTCAG
TACAGGAAGGCAAGATCTGTCAA
Found at i:49967060 original size:15 final size:15
Alignment explanation
Indices: 49967042--49967092 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
49967032 TTAGGCTCTC
*
49967042 CATTTTTAC-TTTTT
1 CATTTTTCCATTTTT
49967056 CCATTTTT-CATTTTT
1 -CATTTTTCCATTTTT
49967071 CATTTTTCCATTTTT
1 CATTTTTCCATTTTT
49967086 -ATTTTTC
1 CATTTTTC
49967093 ACATCTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
14 15 0.44
15 19 0.56
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.69
Consensus pattern (15 bp):
CATTTTTCCATTTTT
Found at i:49967067 original size:22 final size:22
Alignment explanation
Indices: 49967042--49967093 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
49967032 TTAGGCTCTC
49967042 CATTTTT-ACTTTTTCCATTTTT
1 CATTTTTCA-TTTTTCCATTTTT
49967064 CATTTTTCATTTTTCCATTTTT
1 CATTTTTCATTTTTCCATTTTT
49967086 -ATTTTTCA
1 CATTTTTCA
49967094 CATCTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 8 0.28
22 20 0.69
23 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (22 bp):
CATTTTTCATTTTTCCATTTTT
Found at i:49967091 original size:7 final size:7
Alignment explanation
Indices: 49967042--49967093 Score: 63
Period size: 7 Copynumber: 7.3 Consensus size: 7
49967032 TTAGGCTCTC
49967042 CATTTTT
1 CATTTTT
49967049 -ACTTTTT
1 CA-TTTTT
49967056 CCATTTTT
1 -CATTTTT
49967064 CATTTTT
1 CATTTTT
49967071 CATTTTT
1 CATTTTT
49967078 CCATTTTT
1 -CATTTTT
49967086 -ATTTTT
1 CATTTTT
49967092 CA
1 CA
49967094 CATCTTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
6 7 0.17
7 20 0.50
8 12 0.30
9 1 0.03
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:49967610 original size:10 final size:9
Alignment explanation
Indices: 49967591--49967654 Score: 58
Period size: 9 Copynumber: 7.0 Consensus size: 9
49967581 CCCAGTAGAG
49967591 GTTTTTTTT
1 GTTTTTTTT
49967600 GTTTCTTTTT
1 GTTT-TTTTT
*
49967610 GTTTTTATT
1 GTTTTTTTT
*
49967619 -TTTGTTTT
1 GTTTTTTTT
* *
49967627 ATTTTTCTT
1 GTTTTTTTT
49967636 GTTTTTTGTT
1 GTTTTTT-TT
*
49967646 CTTTTTTTT
1 GTTTTTTTT
49967655 TGGATTGAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
8 6 0.14
9 21 0.48
10 17 0.39
ACGTcount: A:0.03, C:0.05, G:0.09, T:0.83
Consensus pattern (9 bp):
GTTTTTTTT
Found at i:49967620 original size:11 final size:10
Alignment explanation
Indices: 49967592--49967653 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 10
49967582 CCAGTAGAGG
49967592 TTTTTTTTGT
1 TTTTTTTTGT
*
49967602 TTCTTTTTGTT
1 TTTTTTTTG-T
49967613 TTTATTTTTGT
1 TTT-TTTTTGT
*
49967624 TTTATTTTTCT
1 TTT-TTTTTGT
*
49967635 TGTTTTTTGT
1 TTTTTTTTGT
49967645 TCTTTTTTT
1 T-TTTTTTT
49967654 TTGGATTGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
10 15 0.35
11 22 0.51
12 6 0.14
ACGTcount: A:0.03, C:0.05, G:0.08, T:0.84
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:49967620 original size:12 final size:11
Alignment explanation
Indices: 49967595--49967645 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 11
49967585 GTAGAGGTTT
*
49967595 TTTTTG-TTTC
1 TTTTTGTTTTA
49967605 TTTTTGTTTTTA
1 TTTTTG-TTTTA
49967617 TTTTTGTTTTA
1 TTTTTGTTTTA
* *
49967628 TTTTTCTTGT-
1 TTTTTGTTTTA
49967638 TTTTTGTT
1 TTTTTGTT
49967646 CTTTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
10 13 0.37
11 13 0.37
12 9 0.26
ACGTcount: A:0.04, C:0.04, G:0.10, T:0.82
Consensus pattern (11 bp):
TTTTTGTTTTA
Found at i:49971028 original size:3 final size:3
Alignment explanation
Indices: 49971020--49971077 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
49971010 GTCTATTGGT
49971020 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
49971068 ATA ATA ATA A
1 ATA ATA ATA A
49971078 AATGACAGAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49972813 original size:101 final size:101
Alignment explanation
Indices: 49972654--49973122 Score: 572
Period size: 101 Copynumber: 4.7 Consensus size: 101
49972644 AATGTCGGAG
* * * * *
49972654 AAACAAGATCTGCCGTCGT-GCCTTCAATCTGTTCTTACTACACCACCAA-GAAAGTAAGATTCG
1 AAACCAGATCCGCCGTCGTAG-CTTCAATCTGTTC-CACTACACCGCCAAGGAAA-TAAGATCCG
* ** * * *
49972717 CTGTTGTAACCTCAATCTTTTTAACTGCAATGT-TGGGA
63 CCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCTGGGA
* * **
49972755 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCTACTACACTGCCAATGAAATAAGATCTACC
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCC-ACTACACCGCCAAGGAAATAAGATCCGCC
* * *
49972820 GTTATGGCTTCAATCTTTTTAATTGCAATGTCGGGGA
65 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCTGGGA
* * *
49972857 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACATCGCCAGGGAAATAAAATCCGCCG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAAATAAGATCCGCCG
* *
49972922 TTGTGGCTTCATTCTTTTAAATTGCAATGTCAGGG-
66 TTGTGGCTTCAATCTTTTAAATTGCAATGTCTGGGA
* * * * *
49972957 AAACCAGAT-CGTCGTCGTAGCTTCAATCTGTTCCACTATACAGCCAGGGAACTAAGATCCGCCG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAAATAAGATCCGCCG
*
49973021 TTGTGGCTTCAATCTTTTAAATTGCAATGT-TGGGG
66 TTGTGGCTTCAATCTTTTAAATTGCAATGTCTGGGA
* * *
49973056 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATCCGTCG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAAATAAGATCCGCCG
49973121 TT
66 TT
49973123 TTCAACCTAC
Statistics
Matches: 323, Mismatches: 39, Indels: 13
0.86 0.10 0.03
Matches are distributed among these distances:
98 3 0.01
99 87 0.27
100 61 0.19
101 128 0.40
102 44 0.14
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (101 bp):
AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAAATAAGATCCGCCG
TTGTGGCTTCAATCTTTTAAATTGCAATGTCTGGGA
Found at i:49973107 original size:50 final size:50
Alignment explanation
Indices: 49972755--49973107 Score: 237
Period size: 50 Copynumber: 7.0 Consensus size: 50
49972745 AATGTTGGGA
* **
49972755 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCTACTACACTGCCAATG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCC-ACTACAATGCCAGGG
** ** ** * * ** * * * *
49972806 AAATAAGATCTACCGTTATGGCTTCAATCTTTTTAATTGCAATGTCGGGG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACAATGCCAGGG
49972856 AAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTAC-ATCGCCAGGG
1 -AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACAAT-GCCAGGG
** * * * * * ** * * *
49972907 AAATAAAATCCGCCGTTGTGGCTTCATTCTTTTAAATTGCAATGTCAGGG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACAATGCCAGGG
* *
49972957 AAACCAGAT-CGTCGTCGTAGCTTCAATCTGTTCCACTATACA-GCCAGGG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACA-ATGCCAGGG
* * * * ** * * ***
49973006 -AACTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTTGGGG
1 AAAC-CAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACAATGCCAGGG
**
49973056 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGG
1 AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACAATGCCAGGG
49973106 AA
1 AA
49973108 GTAAGATCCG
Statistics
Matches: 211, Mismatches: 83, Indels: 17
0.68 0.27 0.05
Matches are distributed among these distances:
48 3 0.01
49 32 0.15
50 113 0.54
51 63 0.30
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (50 bp):
AAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTACAATGCCAGGG
Found at i:49973231 original size:88 final size:88
Alignment explanation
Indices: 49973121--49973644 Score: 832
Period size: 88 Copynumber: 6.0 Consensus size: 88
49973111 AGATCCGTCG
* * * *
49973121 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATCTTTGATCTGCTTCGCTGCCA
1 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
*
49973186 GTACAGGAAGGCAAGATCTGTCA
66 GTACAGGAAGGCAAGATCTGCCA
* * *
49973209 TTTTCAACCTACTCCACTACTGCCCAAGGATACAAGGCTGGTATATTCGATCTGCTTCACCGTCA
1 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
*
49973274 GTACAGGAAGGCAAGATCTGTCA
66 GTACAGGAAGGCAAGATCTGCCA
* *
49973297 TTTTCAACCTACTCCACTACTGCCGAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACAGTCA
1 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
49973362 GTACAGGAAGGCAAGATCTGCCA
66 GTACAGGAAGGCAAGATCTGCCA
* *
49973385 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGTTGGTATATTCGATCTGCTTCACCGTCA
1 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
*
49973450 GTACAAGAAGGCAAGATCTGCCA
66 GTACAGGAAGGCAAGATCTGCCA
* * * *
49973473 TTTTCAACCTACTCCACTACTGCCTAAGGAGACAAGGCTAGTATCTTCGATCTGCTTCACTGTCA
1 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
49973538 GTACAGGAAGGCAAGATCTGCCA
66 GTACAGGAAGGCAAGATCTGCCA
* * * *
49973561 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGACTAGTATCTTCGATCTGCTTCACTGTTA
1 TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
* *
49973626 GTACAAGAAGGAAAGATCT
66 GTACAGGAAGGCAAGATCT
49973645 ACTATCTTCA
Statistics
Matches: 407, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 407 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (88 bp):
TTTTCAACCTACTCCACTACTGCCCAGGGAGACAAGGCTGGTATATTCGATCTGCTTCACTGTCA
GTACAGGAAGGCAAGATCTGCCA
Found at i:49974383 original size:10 final size:9
Alignment explanation
Indices: 49974367--49974435 Score: 53
Period size: 8 Copynumber: 8.3 Consensus size: 9
49974357 TTTTTATGTT
49974367 TTATATATA
1 TTATATATA
49974376 -TATATATA
1 TTATATATA
*
49974384 TTAT-TTTA
1 TTATATATA
49974392 TTATATA-A
1 TTATATATA
49974400 -TATA-ATA
1 TTATATATA
49974407 TT-T-TATA
1 TTATATATA
*
49974414 TTGTATTATA
1 TTATA-TATA
*
49974424 TTATATAAA
1 TTATATATA
49974433 TTA
1 TTA
49974436 AACAGATGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
6 1 0.02
7 11 0.23
8 18 0.38
9 10 0.21
10 8 0.17
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (9 bp):
TTATATATA
Found at i:49974398 original size:15 final size:15
Alignment explanation
Indices: 49974367--49974430 Score: 56
Period size: 15 Copynumber: 4.0 Consensus size: 15
49974357 TTTTTATGTT
49974367 TTATATATATATATATA
1 TTAT-TATAT-TATATA
*
49974384 TTATTTTATTATATA
1 TTATTATATTATATA
* * *
49974399 ATATAATATTTTATA
1 TTATTATATTATATA
49974414 TTGTATTATATTATATA
1 -T-TATTATATTATATA
49974431 AATTAAACAG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
15 17 0.46
16 4 0.11
17 16 0.43
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TTATTATATTATATA
Found at i:49974408 original size:20 final size:22
Alignment explanation
Indices: 49974365--49974414 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
49974355 GATTTTTATG
*
49974365 TTTTATATATATATATATATTA
1 TTTTATATATATATATATAATA
49974387 TTTTAT-TATATA-ATATAATA
1 TTTTATATATATATATATAATA
49974407 TTTTATAT
1 TTTTATAT
49974415 TGTATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.50
21 7 0.27
22 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTATATATATATATATAATA
Found at i:49977590 original size:7 final size:7
Alignment explanation
Indices: 49977534--49977592 Score: 77
Period size: 7 Copynumber: 8.3 Consensus size: 7
49977524 TTAGGCTTTC
49977534 CATTTTT
1 CATTTTT
49977541 -ACTTTTT
1 CA-TTTTT
49977548 CCATTTTT
1 -CATTTTT
49977556 CATTTTT
1 CATTTTT
49977563 CATTTTT
1 CATTTTT
49977570 CATTTTT
1 CATTTTT
49977577 CCATTTTT
1 -CATTTTT
49977585 -ATTTTT
1 CATTTTT
49977591 CA
1 CA
49977593 CATCTTTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
6 7 0.15
7 27 0.57
8 12 0.26
9 1 0.02
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:49977590 original size:14 final size:15
Alignment explanation
Indices: 49977530--49977591 Score: 94
Period size: 15 Copynumber: 4.3 Consensus size: 15
49977520 CACCTTAGGC
49977530 TTTCCATTTTT-ACTT
1 TTTCCATTTTTCA-TT
49977545 TTTCCATTTTTCATT
1 TTTCCATTTTTCATT
49977560 TTT-CATTTTTCATT
1 TTTCCATTTTTCATT
49977574 TTTCCATTTTT-ATT
1 TTTCCATTTTTCATT
49977588 TTTC
1 TTTC
49977592 ACATCTTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
14 21 0.47
15 23 0.51
16 1 0.02
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTCCATTTTTCATT
Found at i:49977603 original size:14 final size:14
Alignment explanation
Indices: 49977530--49977603 Score: 62
Period size: 15 Copynumber: 5.1 Consensus size: 14
49977520 CACCTTAGGC
*
49977530 TTTCCATTTTTACTT
1 TTTCCATCTTTA-TT
*
49977545 TTTCCATTTTTCATT
1 TTTCCATCTTT-ATT
*
49977560 TTT-CATTTTTCATT
1 TTTCCATCTTT-ATT
*
49977574 TTTCCATTTTTATT
1 TTTCCATCTTTATT
49977588 TTTCACATCTTT-TT
1 TTTC-CATCTTTATT
49977602 TT
1 TT
49977604 CTTTTTTTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
14 25 0.45
15 29 0.53
16 1 0.02
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTCCATCTTTATT
Found at i:49978146 original size:12 final size:12
Alignment explanation
Indices: 49978090--49978147 Score: 57
Period size: 12 Copynumber: 4.7 Consensus size: 12
49978080 CCAGTAGAGG
49978090 TTTTTTTGTTTCT
1 TTTTTTTG-TTCT
*
49978103 TTTTCTTT-TTGT
1 TTTT-TTTGTTCT
49978115 TTTTATTT-TTCT
1 TTTT-TTTGTTCT
49978127 TATTTTTTGTTCT
1 T-TTTTTTGTTCT
49978140 TTTTTTTG
1 TTTTTTTG
49978148 GATTGAATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 24 0.62
13 12 0.31
14 3 0.08
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.83
Consensus pattern (12 bp):
TTTTTTTGTTCT
Found at i:49991314 original size:33 final size:33
Alignment explanation
Indices: 49991246--49991315 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
49991236 ATCTATTCTA
* * *
49991246 AAAAGAAAAGAGAAAATCTAAGCTAAAAAGGTG
1 AAAAGAAAAGAGAAAACCTAACCTAAAAAGATG
**
49991279 AAAAGAAAAGA-AAAACCCTAACCTAAAACTATG
1 AAAAGAAAAGAGAAAA-CCTAACCTAAAAAGATG
49991312 AAAA
1 AAAA
49991316 CCTAATAAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 4 0.13
33 27 0.87
ACGTcount: A:0.63, C:0.11, G:0.14, T:0.11
Consensus pattern (33 bp):
AAAAGAAAAGAGAAAACCTAACCTAAAAAGATG
Found at i:49998584 original size:48 final size:48
Alignment explanation
Indices: 49998513--49998625 Score: 136
Period size: 48 Copynumber: 2.4 Consensus size: 48
49998503 TACAACCAGT
* * * * * *
49998513 GGTTCATCCACAACATATTTTAGTCGGTAGTTTATTAGCACGATCAGC
1 GGTTCATCCACAACATATTTTAGTCAGCAATTTATCAGCACGACCAAC
** * *
49998561 GGTTCATCCACAATGTATTTTAGTCAGCAATTTATCAGTACGACCAAT
1 GGTTCATCCACAACATATTTTAGTCAGCAATTTATCAGCACGACCAAC
49998609 GGTTCATCCACAACATA
1 GGTTCATCCACAACATA
49998626 CTAGCAGTTG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (48 bp):
GGTTCATCCACAACATATTTTAGTCAGCAATTTATCAGCACGACCAAC
Found at i:49998708 original size:96 final size:96
Alignment explanation
Indices: 49998608--49998813 Score: 252
Period size: 96 Copynumber: 2.1 Consensus size: 96
49998598 GTACGACCAA
* *
49998608 TGGTTCATCCACAACATACTAGCAG-TTGTTACCTTCACCAAAGGATGGTTCATCCACCAATATT
1 TGGTTCATCCACAACATACTAGCAGCTT-TTACCTGCACCAAAGGATGATTCATCCACCAATATT
** * *
49998672 TTTATCGTTAGCAGTTCATTTGCAATGATCAG
65 TTTATCGTTAGCAGTTCAGCTACAACGATCAG
** * * * * *
49998704 TGGTTCATCCACAATGTATTAGCAGCTTTTATCTGCAGCGATGGATGATTCATCCACCAATATTT
1 TGGTTCATCCACAACATACTAGCAGCTTTTACCTGCACCAAAGGATGATTCATCCACCAATATTT
*
49998769 TTATCGTTAGCATTTCAGCTACAACGATCAG
66 TTATCGTTAGCAGTTCAGCTACAACGATCAG
* *
49998800 TGGTTTATCTACAA
1 TGGTTCATCCACAA
49998814 TGTGGTGTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
96 91 0.98
97 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (96 bp):
TGGTTCATCCACAACATACTAGCAGCTTTTACCTGCACCAAAGGATGATTCATCCACCAATATTT
TTATCGTTAGCAGTTCAGCTACAACGATCAG
Found at i:49999808 original size:19 final size:21
Alignment explanation
Indices: 49999764--49999809 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
49999754 AAATAAAAAT
* *
49999764 ATATTTATATTATTTTAATTA
1 ATATTTATATAATTTTAATAA
49999785 ATATTTA-ATAATTTT-ATAA
1 ATATTTATATAATTTTAATAA
49999804 ATATTT
1 ATATTT
49999810 TATTTATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 9 0.39
20 7 0.30
21 7 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATATTTATATAATTTTAATAA
Found at i:50001034 original size:39 final size:39
Alignment explanation
Indices: 50000991--50001068 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
50000981 ACATTACGCG
* * *
50000991 TATAATTACATAACGTTCAAGCACATATCGCAATACTCA
1 TATAATCACATAACATTCAACCACATATCGCAATACTCA
* *
50001030 TATAATCGCATAACATTCAACCATATATCGCAATACTCA
1 TATAATCACATAACATTCAACCACATATCGCAATACTCA
50001069 AAACAGGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (39 bp):
TATAATCACATAACATTCAACCACATATCGCAATACTCA
Found at i:50003281 original size:25 final size:25
Alignment explanation
Indices: 50003245--50003295 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
50003235 TACTAGGCCA
**
50003245 TGTGTGACACACGGTTTAGGCTATT
1 TGTGTGACACACGGGCTAGGCTATT
50003270 TGTG-GACTACACGGGCTAGGCTATT
1 TGTGTGAC-ACACGGGCTAGGCTATT
50003295 T
1 T
50003296 AGGTTGTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (25 bp):
TGTGTGACACACGGGCTAGGCTATT
Found at i:50013809 original size:18 final size:17
Alignment explanation
Indices: 50013787--50013921 Score: 86
Period size: 18 Copynumber: 8.0 Consensus size: 17
50013777 AATACTAAGA
50013787 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
50013804 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
50013820 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
50013834 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
50013853 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
**
50013869 ATTTTAGAAAATTCATAT
1 ATTTTATTAAATT-ATAT
50013887 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
50013904 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
50013922 TTAATAATAA
Statistics
Matches: 90, Mismatches: 15, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 9 0.10
16 8 0.09
17 20 0.22
18 40 0.44
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:50013840 original size:26 final size:25
Alignment explanation
Indices: 50013802--50013860 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
50013792 ATTAAATTAT
*
50013802 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
50013828 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
50013854 ATATTAT
1 ATATTAT
50013861 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:50013859 original size:15 final size:15
Alignment explanation
Indices: 50013815--50013870 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
50013805 TTTTTGTTAA
*
50013815 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
50013830 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
50013841 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
50013856 ATTATATATTATAAT
1 ATTATATTTTATAAT
50013871 TTTAGAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:50013859 original size:120 final size:120
Alignment explanation
Indices: 50013645--50013887 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
50013635 TGATACAATC
50013645 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
* * *
50013710 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGAAAATTCAT
50013765 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
50013830 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGAAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGAAAATTCAT
50013885 ATA
1 ATA
50013888 TTTTATTAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (120 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGAAAATTCAT
Found at i:50030926 original size:23 final size:24
Alignment explanation
Indices: 50030900--50030960 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
50030890 GGTGCTTATG
*
50030900 TTTTGAATTTATTAT-TGA-TAAAA
1 TTTTGAATATATTATAT-ATTAAAA
50030923 TTTT-AATATATATATATATTAAAA
1 TTTTGAATATAT-TATATATTAAAA
*
50030947 TTTTGAATGTATTA
1 TTTTGAATATATTA
50030961 GTTTTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
22 6 0.19
23 8 0.25
24 12 0.38
25 6 0.19
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (24 bp):
TTTTGAATATATTATATATTAAAA
Found at i:50032404 original size:40 final size:40
Alignment explanation
Indices: 50032349--50032432 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
50032339 TTAAAAAGCG
50032349 ATACCAATTTGTTATATTTTATGGTCTATTTATGTAGATC
1 ATACCAATTTGTTATATTTTATGGTCTATTTATGTAGATC
50032389 ATACCAATTTGTTATATTTTATGGTCTATTTATGTAGATC
1 ATACCAATTTGTTATATTTTATGGTCTATTTATGTAGATC
50032429 ATAC
1 ATAC
50032433 ATGTCAAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.49
Consensus pattern (40 bp):
ATACCAATTTGTTATATTTTATGGTCTATTTATGTAGATC
Found at i:50037654 original size:17 final size:17
Alignment explanation
Indices: 50037620--50037661 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
50037610 AAATATAGAT
*
50037620 TATTATTTA-TTAAATA
1 TATTATTAACTTAAATA
* *
50037636 TATTTTTAACTTAACTA
1 TATTATTAACTTAAATA
50037653 TATTATTAA
1 TATTATTAA
50037662 TTATATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTATTAACTTAAATA
Found at i:50037962 original size:15 final size:15
Alignment explanation
Indices: 50037942--50037972 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
50037932 ATTTCATTCT
50037942 TCCTCTATTCCATTA
1 TCCTCTATTCCATTA
50037957 TCCTCTATTCCATTA
1 TCCTCTATTCCATTA
50037972 T
1 T
50037973 GATGAACCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.32, G:0.00, T:0.48
Consensus pattern (15 bp):
TCCTCTATTCCATTA
Found at i:50043878 original size:23 final size:21
Alignment explanation
Indices: 50043840--50043882 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
50043830 TCATTTTTCA
50043840 AATTTTATAGATATGATATATC
1 AATTTTATAGATATGA-ATATC
50043862 AATTTATATA-ATGATGAATAT
1 AATTT-TATAGAT-ATGAATAT
50043883 TTGAGATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.44
Consensus pattern (21 bp):
AATTTTATAGATATGAATATC
Found at i:50046032 original size:7 final size:7
Alignment explanation
Indices: 50046020--50046053 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
50046010 ATGTGAGGTT
50046020 GTTTATG
1 GTTTATG
50046027 GTTTATG
1 GTTTATG
50046034 GTTTATG
1 GTTTATG
50046041 GTTTATG
1 GTTTATG
*
50046048 ATTTAT
1 GTTTAT
50046054 TCAACTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (7 bp):
GTTTATG
Found at i:50049685 original size:55 final size:55
Alignment explanation
Indices: 50049626--50049796 Score: 129
Period size: 55 Copynumber: 3.1 Consensus size: 55
50049616 TATTTATATA
50049626 TTAATTTATAACGAATAGATGTGAAAATAAAATTACAATTTGAAGCATAACTCGG
1 TTAATTTATAACGAATAGATGTGAAAATAAAATTACAATTTGAAGCATAACTCGG
* * ** ** * * * ***
50049681 TTAATATATTA--TTTA-AT-T-ATCATAAAAATAACTAATATGACTGCTATTATTA-TATA
1 TTAATTTATAACGAATAGATGTGAAAAT-AAAATTAC-AATTTGA-AGC-A-TA--ACTCGG
50049737 TTAATTTATAACGAATAGATGTGAAAATAAAATTACAATTTGAAGCATAACTCGG
1 TTAATTTATAACGAATAGATGTGAAAATAAAATTACAATTTGAAGCATAACTCGG
50049792 TTAAT
1 TTAAT
50049797 AATCATAGTT
Statistics
Matches: 79, Mismatches: 24, Indels: 26
0.61 0.19 0.20
Matches are distributed among these distances:
50 3 0.04
51 8 0.10
52 8 0.10
53 4 0.05
54 2 0.03
55 17 0.22
56 12 0.15
57 2 0.03
58 4 0.05
59 8 0.10
60 8 0.10
61 3 0.04
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (55 bp):
TTAATTTATAACGAATAGATGTGAAAATAAAATTACAATTTGAAGCATAACTCGG
Found at i:50050212 original size:15 final size:14
Alignment explanation
Indices: 50050191--50050230 Score: 62
Period size: 16 Copynumber: 2.7 Consensus size: 14
50050181 TTTAAAATTG
50050191 ATTTAAAATTTTAA
1 ATTTAAAATTTTAA
50050205 ATTTTAAAAATTTTAA
1 A-TTT-AAAATTTTAA
50050221 ATTTAAAATT
1 ATTTAAAATT
50050231 AAAAGTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.29
15 6 0.25
16 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTAAAATTTTAA
Found at i:50059926 original size:63 final size:63
Alignment explanation
Indices: 50059820--50060001 Score: 204
Period size: 63 Copynumber: 2.9 Consensus size: 63
50059810 GTGACAGGCT
* * * * * * *
50059820 GTGTAACTCACTA-TTTTGAGTTAATGTCAAACAGGCTAGGGACATGAGCATGTGTCTATACC
1 GTGTAACTCACTATTTTTGAGTTAGTGTCACACGGGCCAGGGACACGAGCATCTGTCTAGACC
* * *
50059882 GTGTAACTCACTATTTTTGAGTTAGGGTCACACGGGCCAGGGACACGAGCGTCTGTCTAGGCC
1 GTGTAACTCACTATTTTTGAGTTAGTGTCACACGGGCCAGGGACACGAGCATCTGTCTAGACC
* * * * * * *
50059945 GTGTAACTTACTATTTGTGAATTAGTGTTACATGGGCCAGAGACACAAGCATCTGTC
1 GTGTAACTCACTATTTTTGAGTTAGTGTCACACGGGCCAGGGACACGAGCATCTGTC
50060002 CAAGTCGTGT
Statistics
Matches: 100, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
62 13 0.13
63 87 0.87
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (63 bp):
GTGTAACTCACTATTTTTGAGTTAGTGTCACACGGGCCAGGGACACGAGCATCTGTCTAGACC
Found at i:50070236 original size:15 final size:15
Alignment explanation
Indices: 50070203--50070241 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
50070193 CCAAGGATAA
50070203 AAAAATGAAA-GGAGG
1 AAAAA-GAAATGGAGG
50070218 -AAAAGAAATGGAGG
1 AAAAAGAAATGGAGG
50070232 AAAAAGAAAT
1 AAAAAGAAAT
50070242 ATCATGCAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.18
14 9 0.41
15 9 0.41
ACGTcount: A:0.64, C:0.00, G:0.28, T:0.08
Consensus pattern (15 bp):
AAAAAGAAATGGAGG
Found at i:50071687 original size:28 final size:28
Alignment explanation
Indices: 50071647--50071700 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
50071637 AAAAATGTGC
50071647 TTTGTAAGAAAAAGAATTATTTGAACGT
1 TTTGTAAGAAAAAGAATTATTTGAACGT
50071675 TTTGTAAGAAAAAGAATTATTTGAAC
1 TTTGTAAGAAAAAGAATTATTTGAAC
50071701 AACTCTGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.44, C:0.04, G:0.17, T:0.35
Consensus pattern (28 bp):
TTTGTAAGAAAAAGAATTATTTGAACGT
Found at i:50088685 original size:18 final size:19
Alignment explanation
Indices: 50088664--50088701 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
50088654 TTTATACAAT
50088664 AAAAAT-AATTTAAAATTA
1 AAAAATAAATTTAAAATTA
*
50088682 AAAAATAAATTTAACATTA
1 AAAAATAAATTTAAAATTA
50088701 A
1 A
50088702 TGAAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAATAAATTTAAAATTA
Found at i:50097225 original size:13 final size:13
Alignment explanation
Indices: 50097207--50097232 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50097197 AGTAACTGCT
50097207 AAATTATAGCACA
1 AAATTATAGCACA
50097220 AAATTATAGCACA
1 AAATTATAGCACA
50097233 CCCATGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (13 bp):
AAATTATAGCACA
Found at i:50104737 original size:45 final size:45
Alignment explanation
Indices: 50104650--50104747 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 45
50104640 AGAACGAATA
* *
50104650 GAAATAGAGAAATGAAAAGCATTCAGAAATGATTATGATTTTCTCC
1 GAAATGGAGAAATGAAAAGCATTCAGAAATGAATATGATTTTCT-C
* ** * *
50104696 GAAATGGAGAAAT-AAAATCATTTGGAAATGAATGTGGTTTTCTC
1 GAAATGGAGAAATGAAAAGCATTCAGAAATGAATATGATTTTCTC
*
50104740 AAAATGGA
1 GAAATGGA
50104748 AATAGAAATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 8 0.18
45 24 0.55
46 12 0.27
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (45 bp):
GAAATGGAGAAATGAAAAGCATTCAGAAATGAATATGATTTTCTC
Found at i:50104758 original size:12 final size:13
Alignment explanation
Indices: 50104741--50104770 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
50104731 GGTTTTCTCA
50104741 AAATGGAAAT-AG
1 AAATGGAAATGAG
50104753 AAATGGAAATGAG
1 AAATGGAAATGAG
50104766 AAATG
1 AAATG
50104771 ATTCATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (13 bp):
AAATGGAAATGAG
Found at i:50104785 original size:22 final size:22
Alignment explanation
Indices: 50104759--50104807 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
50104749 ATAGAAATGG
*
50104759 AAATGAGAAATG-ATTCATTTAC
1 AAATGAGAAATGAATT-ACTTAC
*
50104781 AAATG-TAAATGAATTACTTAC
1 AAATGAGAAATGAATTACTTAC
50104802 AAATGA
1 AAATGA
50104808 TCATGAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (22 bp):
AAATGAGAAATGAATTACTTAC
Found at i:50106707 original size:25 final size:25
Alignment explanation
Indices: 50106624--50106706 Score: 107
Period size: 25 Copynumber: 3.3 Consensus size: 25
50106614 TGGCGTATCA
50106624 TTTGGAAAACCTTTGTGGCAAATTC
1 TTTGGAAAACCTTTGTGGCAAATTC
* **
50106649 TCTGGAAAACCTTTGTGGCGTA-TC
1 TTTGGAAAACCTTTGTGGCAAATTC
50106673 ATTT-GAAAAGCCTTTGTGGCAAATTC
1 -TTTGGAAAA-CCTTTGTGGCAAATTC
50106699 TTTGGAAA
1 TTTGGAAA
50106707 GTTGTTATGG
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 7 0.15
25 35 0.73
26 6 0.12
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (25 bp):
TTTGGAAAACCTTTGTGGCAAATTC
Found at i:50121590 original size:21 final size:20
Alignment explanation
Indices: 50121564--50121602 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
50121554 TGACCACGGT
*
50121564 CTCTCGGTGGCTGCTGTACTA
1 CTCTCGGTGG-TGCAGTACTA
50121585 CTCTCGGTGGTGCAGTAC
1 CTCTCGGTGGTGCAGTAC
50121603 CTATGCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.28, G:0.31, T:0.31
Consensus pattern (20 bp):
CTCTCGGTGGTGCAGTACTA
Found at i:50126497 original size:14 final size:13
Alignment explanation
Indices: 50126417--50126508 Score: 51
Period size: 14 Copynumber: 6.6 Consensus size: 13
50126407 GCTATATATT
* *
50126417 ATTATTTTTATTA
1 ATTATATTTAATA
50126430 ATTCATATTTTAATA
1 ATT-ATA-TTTAATA
*
50126445 ATTATTATATTAAGA
1 ATTA-TAT-TTAATA
*
50126460 ATGT-TATTAAATTA
1 AT-TATATTTAA-TA
* * *
50126474 TTTATTTTTATTAA
1 ATTATATTTAAT-A
50126488 ATTATATTTAATA
1 ATTATATTTAATA
50126501 ATTATATT
1 ATTATATT
50126509 AAAATATGAT
Statistics
Matches: 59, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
13 17 0.29
14 23 0.39
15 18 0.31
16 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (13 bp):
ATTATATTTAATA
Found at i:50126548 original size:55 final size:53
Alignment explanation
Indices: 50126443--50126556 Score: 158
Period size: 55 Copynumber: 2.1 Consensus size: 53
50126433 CATATTTTAA
* * * *
50126443 TAATTATTATATTAAGAATGTTATTAAATTATTTATTTTTATTAAATTATATT
1 TAATAATTATATTAAGAATATGATTAAATTATTTATTATTATTAAATTATATT
50126496 TAATAATTATATTAA-AATATGATTAAATTATTTGTTATTATTATTAAATTATATT
1 TAATAATTATATTAAGAATATGATTAAATTA--T-TTATTATTATTAAATTATATT
50126551 TAATAA
1 TAATAA
50126557 CAATAATCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
52 13 0.24
53 14 0.26
54 1 0.02
55 26 0.48
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (53 bp):
TAATAATTATATTAAGAATATGATTAAATTATTTATTATTATTAAATTATATT
Found at i:50135804 original size:14 final size:14
Alignment explanation
Indices: 50135785--50135835 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
50135775 CAAAAAAATC
50135785 AAAAAAAATTCGAA
1 AAAAAAAATTCGAA
*
50135799 AAAAAAAATTTGATTGA
1 AAAAAAAATTCGA---A
50135816 AAAAAAAATTC-AA
1 AAAAAAAATTCGAA
50135829 AAAAAAA
1 AAAAAAA
50135836 GTGAAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
13 8 0.25
14 12 0.38
16 1 0.03
17 11 0.34
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.18
Consensus pattern (14 bp):
AAAAAAAATTCGAA
Found at i:50135856 original size:25 final size:24
Alignment explanation
Indices: 50135826--50135886 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 24
50135816 AAAAAAAATT
50135826 CAAAAAAAAAGTGAAAAAAAA-TCGAG
1 CAAAAAAAAA--GAAAAAAAAGT-GAG
50135852 CAAAAAAAAAGAAAAAAAAGGTGAG
1 CAAAAAAAAAGAAAAAAAA-GTGAG
50135877 CAAAAAAAAA
1 CAAAAAAAAA
50135887 AATCAAGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
24 9 0.27
25 13 0.39
26 11 0.33
ACGTcount: A:0.74, C:0.07, G:0.15, T:0.05
Consensus pattern (24 bp):
CAAAAAAAAAGAAAAAAAAGTGAG
Found at i:50136921 original size:12 final size:12
Alignment explanation
Indices: 50136909--50137026 Score: 50
Period size: 12 Copynumber: 9.8 Consensus size: 12
50136899 GAAAGAGATT
*
50136909 GAAAAAGAAATT
1 GAAAAAGAAATA
50136921 G--AAAGAAA-A
1 GAAAAAGAAATA
*
50136930 CAAAAAGAAA-A
1 GAAAAAGAAATA
*
50136941 CGAAAAAGAAAAA
1 -GAAAAAGAAATA
**
50136954 GAAATTGCAAA-A
1 GAAAAAG-AAATA
*
50136966 GAAAAAGAAATC
1 GAAAAAGAAATA
** *
50136978 GAAAAAGTGAGA
1 GAAAAAGAAATA
50136990 GAAAAAGAAA-A
1 GAAAAAGAAATA
*
50137001 TGAAGAAAAGAAAATT
1 -G-A-AAAAG-AAATA
50137017 GAAAAAGAAA
1 GAAAAAGAAA
50137027 AAGCGAAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
10 7 0.09
11 12 0.15
12 41 0.51
13 10 0.12
14 6 0.08
15 4 0.05
ACGTcount: A:0.70, C:0.03, G:0.19, T:0.08
Consensus pattern (12 bp):
GAAAAAGAAATA
Found at i:50136952 original size:18 final size:18
Alignment explanation
Indices: 50136926--50137029 Score: 82
Period size: 18 Copynumber: 5.6 Consensus size: 18
50136916 AAATTGAAAG
*
50136926 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
** *
50136944 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAAACGA
*
50136962 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAAACGA
** * *
50136980 AAAAGTGAGAGAAAAAGA
1 AAAAGAAAAAGAAAACGA
* *
50136998 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
50137019 AAAAGAAAAAG
1 AAAAGAAAAAG
50137030 CGAAAAAAGA
Statistics
Matches: 66, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
18 47 0.71
19 5 0.08
20 8 0.12
21 6 0.09
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:50136954 original size:6 final size:6
Alignment explanation
Indices: 50136922--50137029 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
50136912 AAAGAAATTG
* * ** *
50136922 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
50136969 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
50137020 AAAGAA AAAG
1 AAAGAA AAAG
50137030 CGAAAAAAGA
Statistics
Matches: 75, Mismatches: 24, Indels: 7
0.71 0.23 0.07
Matches are distributed among these distances:
5 3 0.04
6 61 0.81
7 7 0.09
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:50137011 original size:14 final size:13
Alignment explanation
Indices: 50136990--50137027 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
50136980 AAAAGTGAGA
50136990 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
50137002 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
50137017 GAAAAAGAAAA
1 GAAAAAGAAAA
50137028 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:50137041 original size:21 final size:21
Alignment explanation
Indices: 50136991--50137041 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
50136981 AAAGTGAGAG
*
50136991 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
50137012 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
50137033 AAAAAGAAA
1 AAAAAGAAA
50137042 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:50137081 original size:33 final size:33
Alignment explanation
Indices: 50137044--50137106 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
50137034 AAAAGAAATT
50137044 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
50137077 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
50137107 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:50142142 original size:31 final size:31
Alignment explanation
Indices: 50142102--50142163 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
50142092 ATATAATTTG
*
50142102 GTCATTAAATTATTCGAAAA-TTTTCATTTAA
1 GTCACTAAATTATT-GAAAAGTTTTCATTTAA
* *
50142133 GTCACTAAATTATTTAAAAGTTTTTATTTAA
1 GTCACTAAATTATTGAAAAGTTTTCATTTAA
50142164 ATTATTGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (31 bp):
GTCACTAAATTATTGAAAAGTTTTCATTTAA
Found at i:50153619 original size:18 final size:18
Alignment explanation
Indices: 50153596--50153631 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
50153586 GCCAGCTCAA
50153596 GTGGGTCAAATGAGCCCT
1 GTGGGTCAAATGAGCCCT
50153614 GTGGGTCAAATGAGCCCT
1 GTGGGTCAAATGAGCCCT
50153632 ATTTAATCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (18 bp):
GTGGGTCAAATGAGCCCT
Found at i:50158143 original size:25 final size:25
Alignment explanation
Indices: 50158113--50158293 Score: 129
Period size: 25 Copynumber: 7.3 Consensus size: 25
50158103 CTCGCCATAA
50158113 AGGCTTTCCAAATAATACACCACAT
1 AGGCTTTCCAAATAATACACCACAT
* ** * * *
50158138 ATGCTTTTTGAGATAACTA-GCCACAA
1 AGGC-TTTCCAAATAA-TACACCACAT
* * * *
50158164 ATGCTTCCCAAATAATAC-GC-TAT
1 AGGCTTTCCAAATAATACACCACAT
*
50158187 AGGCTTTCCAAATAATACGCCACAT
1 AGGCTTTCCAAATAATACACCACAT
* * * *
50158212 AGGCTTTTCAGATAACA-AGCCACAA
1 AGGCTTTCCAAATAATACA-CCACAT
* *
50158237 AGGCTTCCCAAATAATACATCACAT
1 AGGCTTTCCAAATAATACACCACAT
*
50158262 AGGC-TTCCTAAATAGTACACCACAT
1 AGGCTTTCC-AAATAATACACCACAT
50158287 AGGCTTT
1 AGGCTTT
50158294 TTGAGATAAC
Statistics
Matches: 116, Mismatches: 31, Indels: 17
0.71 0.19 0.10
Matches are distributed among these distances:
23 17 0.15
24 7 0.06
25 70 0.60
26 20 0.17
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.26
Consensus pattern (25 bp):
AGGCTTTCCAAATAATACACCACAT
Done.