Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 167 of 228
Found at i:50167425 original size:74 final size:73
Alignment explanation
Indices: 50167304--50167464 Score: 304
Period size: 74 Copynumber: 2.2 Consensus size: 73
50167294 CCCAAAAATC
*
50167304 AAATCGAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTACCCAAATACCAAATTAC
1 AAATCCAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTA-CCAAATACCAAATTAC
50167369 CCACATAAT
65 CCACATAAT
50167378 AAATCCAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTACCAAATACCAAATTACC
1 AAATCCAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTACCAAATACCAAATTACC
50167443 CACATAAT
66 CACATAAT
50167451 AAATCCAATACCCA
1 AAATCCAATACCCA
50167465 ATGTCATGAT
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
73 39 0.45
74 47 0.55
ACGTcount: A:0.44, C:0.37, G:0.02, T:0.17
Consensus pattern (73 bp):
AAATCCAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTACCAAATACCAAATTACC
CACATAAT
Found at i:50167503 original size:73 final size:68
Alignment explanation
Indices: 50167304--50167464 Score: 196
Period size: 73 Copynumber: 2.2 Consensus size: 68
50167294 CCCAAAAATC
* *
50167304 AAATCGAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTACCCAAATACCAAATTAC
1 AAATCCAATACCCATCCACGAACCCAAAACCTACCCC--A--AA--TACCCAAATACCAAATTAC
50167369 CCACATAAT
60 CCACATAAT
*
50167378 AAATCCAATACCCATCCACGAACCCAATACCTACCCCAAATCAACTTACCAAATACCAAATTACC
1 AAATCCAATACCCATCCACGAACCCAAAACCTACCCCAAAT--AC---CCAAATACCAAATTACC
50167443 CACATAAT
61 CACATAAT
50167451 AAATCCAATACCCA
1 AAATCCAATACCCA
50167465 ATGTCATGAT
Statistics
Matches: 81, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
68 1 0.01
70 4 0.05
72 1 0.01
73 39 0.48
74 36 0.44
ACGTcount: A:0.44, C:0.37, G:0.02, T:0.17
Consensus pattern (68 bp):
AAATCCAATACCCATCCACGAACCCAAAACCTACCCCAAATACCCAAATACCAAATTACCCACAT
AAT
Found at i:50167660 original size:23 final size:22
Alignment explanation
Indices: 50167622--50167681 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
50167612 GGCTACAAGG
* *
50167622 AAAAAAGAAAGAAA-AAAGAGA
1 AAAAAAGAAAAAAACAAAAAGA
*
50167643 AAACAA-AAAAAAACAAAAAGA
1 AAAAAAGAAAAAAACAAAAAGA
50167664 AAAAAAGAAAAAAACAAA
1 AAAAAAGAAAAAAACAAA
50167682 CACCTAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 6 0.18
21 16 0.48
22 11 0.33
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (22 bp):
AAAAAAGAAAAAAACAAAAAGA
Found at i:50167667 original size:22 final size:23
Alignment explanation
Indices: 50167634--50167681 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
50167624 AAAAGAAAGA
50167634 AAAAAGAGAAAACAA-AAAAAAAC
1 AAAAAGAGAAAA-AAGAAAAAAAC
50167657 AAAAAGA-AAAAAAGAAAAAAAC
1 AAAAAGAGAAAAAAGAAAAAAAC
50167679 AAA
1 AAA
50167682 CACCTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 2 0.08
22 15 0.62
23 7 0.29
ACGTcount: A:0.85, C:0.06, G:0.08, T:0.00
Consensus pattern (23 bp):
AAAAAGAGAAAAAAGAAAAAAAC
Found at i:50174135 original size:25 final size:25
Alignment explanation
Indices: 50174083--50174176 Score: 89
Period size: 25 Copynumber: 3.8 Consensus size: 25
50174073 TCATGTACAT
* * ** *
50174083 GTATGCTCATACGACCTGCGAATGG
1 GTATGCTCACACGAGCTGTAAATCG
** *
50174108 GTATGCTCACTTGAGCTGTAGATCG
1 GTATGCTCACACGAGCTGTAAATCG
* * *
50174133 GTATGCTCTCACGAGCTATAAATTG
1 GTATGCTCACACGAGCTGTAAATCG
50174158 GTATGCTCACACGAGCTGT
1 GTATGCTCACACGAGCTGT
50174177 GGGTCAGATT
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCG
Found at i:50179977 original size:5 final size:5
Alignment explanation
Indices: 50179969--50180038 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
50179959 TTTTCTTTTC
50179969 TTTAT TTTAT TTTAT TTTAT TTT-T ATTTA- TTTA- TTTATT ATTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTTA-T -TTTAT
*
50180014 TATTAT ATTA- TTTATT TTTAT TTTA
1 T-TTAT TTTAT TTTA-T TTTAT TTTA
50180039 CTGATCCATT
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
4 12 0.22
5 30 0.55
6 9 0.16
7 4 0.07
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:50179999 original size:4 final size:4
Alignment explanation
Indices: 50179969--50180030 Score: 53
Period size: 4 Copynumber: 15.8 Consensus size: 4
50179959 TTTTCTTTTC
50179969 TTTA TTTTA TTTTA TTT- TATT- TTTA TTTA TTTA TTTA -TTA TTTA -TTA
1 TTTA -TTTA -TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
50180016 -TTA TATTA TTTA TTT
1 TTTA T-TTA TTTA TTT
50180031 TTATTTTACT
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
3 12 0.23
4 27 0.52
5 13 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:50180237 original size:18 final size:20
Alignment explanation
Indices: 50180214--50180262 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
50180204 TTCGTTTCTT
50180214 TTTTTATTTTTA-T-CTGTA
1 TTTTTATTTTTACTACTGTA
*
50180232 TTTTTATTTTTAGCTACTTTA
1 TTTTTATTTTTA-CTACTGTA
50180253 TTTTTATTTT
1 TTTTTATTTT
50180263 CTAAGACTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 12 0.44
20 1 0.04
21 14 0.52
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTTATTTTTACTACTGTA
Found at i:50182039 original size:30 final size:30
Alignment explanation
Indices: 50182004--50182060 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
50181994 TGGGCATTTT
* *
50182004 CACACGGGCTGGGCACATGCCTGTGTGATC
1 CACACGGGCTGGACACATGCCTATGTGATC
*
50182034 CACACGGGTTGGACACATGCCTATGTG
1 CACACGGGCTGGACACATGCCTATGTG
50182061 GTAGCCCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (30 bp):
CACACGGGCTGGACACATGCCTATGTGATC
Found at i:50196128 original size:50 final size:49
Alignment explanation
Indices: 50196047--50196208 Score: 162
Period size: 50 Copynumber: 3.3 Consensus size: 49
50196037 TAGAGGACTT
* * ** *
50196047 GCCATAAAAGCTTTCCAAATAATATGCCACATAGAATTTTCAGATAAGTA
1 GCCACAAAAGCTTCCCAAATAATACACCACATAGAA-TTTCAGATAACTA
* * *
50196097 GCCACAAAAGCTTCCCAAATAATACATCACATAGGATTTCAGGTAACTA
1 GCCACAAAAGCTTCCCAAATAATACACCACATAGAATTTCAGATAACTA
* ** * **
50196146 GCCACAAAGGCTTCCCAAATAATATGCCATATAGGCTTTTCAGATAACTA
1 GCCACAAAAGCTTCCCAAATAATACACCACATA-GAATTTCAGATAACTA
* *
50196196 GCCATAAAGGCTT
1 GCCACAAAAGCTT
50196209 ATTTTGTTTG
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 39 0.41
50 55 0.59
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (49 bp):
GCCACAAAAGCTTCCCAAATAATACACCACATAGAATTTCAGATAACTA
Found at i:50199133 original size:30 final size:30
Alignment explanation
Indices: 50199099--50199162 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
50199089 TCGTAAGCTC
50199099 GATTTAAGTCCAATCTTGCACGTATAACAT
1 GATTTAAGTCCAATCTTGCACGTATAACAT
50199129 GATTTAAGTCCAATCTTGCACGTATAACAT
1 GATTTAAGTCCAATCTTGCACGTATAACAT
50199159 GATT
1 GATT
50199163 GCTTTAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (30 bp):
GATTTAAGTCCAATCTTGCACGTATAACAT
Found at i:50199758 original size:24 final size:24
Alignment explanation
Indices: 50199707--50199758 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
50199697 TCCAGCTAGA
* * *
50199707 GATGAGTTCAGAGGCAAGCCAGAT
1 GATGAGTTCAGAGGCAAGACAAAC
*
50199731 GATGAGTTTAGAGGCAAGACAAAC
1 GATGAGTTCAGAGGCAAGACAAAC
50199755 GATG
1 GATG
50199759 GTCCAGCTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (24 bp):
GATGAGTTCAGAGGCAAGACAAAC
Found at i:50206199 original size:23 final size:23
Alignment explanation
Indices: 50206173--50206266 Score: 127
Period size: 23 Copynumber: 4.1 Consensus size: 23
50206163 TCACCTCAAG
* *
50206173 GGCATTACAGAATATGCCGA-AAA
1 GGCATCACAGAATACGCC-ACAAA
50206196 GGCATCACAGAATACGCCACAAA
1 GGCATCACAGAATACGCCACAAA
50206219 GGCATCACAGAATACGCCACAAA
1 GGCATCACAGAATACGCCACAAA
* * *
50206242 GACATCATAGAATACACCACAAA
1 GGCATCACAGAATACGCCACAAA
50206265 GG
1 GG
50206267 TTTCTGAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 1 0.02
23 63 0.98
ACGTcount: A:0.45, C:0.26, G:0.18, T:0.12
Consensus pattern (23 bp):
GGCATCACAGAATACGCCACAAA
Found at i:50211400 original size:96 final size:97
Alignment explanation
Indices: 50211285--50211478 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 97
50211275 TATTCTTAGG
50211285 ACATTATTAAAAAACAGTTTATTTAT-ACACAGAAAAGAAACTGAAATAATAATGGTAACGCCTT
1 ACATTATTAAAAAACAGTTTATTTATAACACAGAAAAGAAACTGAAATAATAATGGTAACGCCTT
50211349 ATATTAATAAACATGATAAATCAAGTATGTTA
66 ATATTAATAAACATGATAAATCAAGTATGTTA
*
50211381 ACATTATTAGAAAACAGTTTATTTATACACACAGAAAAGAAACTGAAATAATAATGGTAACGCCT
1 ACATTATTAAAAAACAGTTTATTTATA-ACACAGAAAAGAAACTGAAATAATAATGGTAACGCCT
*
50211446 TATATTGATAAACATGATAAATCAAGTATGTTA
65 TATATTAATAAACATGATAAATCAAGTATGTTA
50211479 TTACAACCAT
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
96 25 0.27
98 69 0.73
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (97 bp):
ACATTATTAAAAAACAGTTTATTTATAACACAGAAAAGAAACTGAAATAATAATGGTAACGCCTT
ATATTAATAAACATGATAAATCAAGTATGTTA
Found at i:50214432 original size:15 final size:15
Alignment explanation
Indices: 50214412--50214442 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50214402 ATTACGGAAG
*
50214412 ATCAGTCTTACTACT
1 ATCAGTCTCACTACT
50214427 ATCAGTCTCACTACT
1 ATCAGTCTCACTACT
50214442 A
1 A
50214443 GGATGGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.35
Consensus pattern (15 bp):
ATCAGTCTCACTACT
Found at i:50214588 original size:75 final size:75
Alignment explanation
Indices: 50214458--50214634 Score: 207
Period size: 75 Copynumber: 2.4 Consensus size: 75
50214448 GAATAACAAC
* ** *
50214458 TCACCACAAAGGATTTCCAGAGAATTCTCCACAAAGGCTTTCCAAATGATATGCCAC-AAGGACT
1 TCACCACAAAGGCTTTCCAGAGAATTCAACACAAAAGCTTTCCAAATGATATGCCACAAAGG-CT
50214522 TT-TCAAAGAAT
65 TTCT-AAAGAAT
* * * *
50214533 TCACCAAAAAGGCTTTCCAGAGAATTCAATATAAAAGCTTTCCAAA-GAATTTGCCACAAAGGCT
1 TCACCACAAAGGCTTTCCAGAGAATTCAACACAAAAGCTTTCCAAATG-ATATGCCACAAAGGCT
50214597 TTCTAAAGAAT
65 TTCTAAAGAAT
* * *
50214608 TTACCACAAAGGCTTTCTAGCGAATTC
1 TCACCACAAAGGCTTTCCAGAGAATTC
50214635 TCAACTTAAC
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
74 1 0.01
75 81 0.93
76 5 0.06
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (75 bp):
TCACCACAAAGGCTTTCCAGAGAATTCAACACAAAAGCTTTCCAAATGATATGCCACAAAGGCTT
TCTAAAGAAT
Found at i:50214626 original size:25 final size:25
Alignment explanation
Indices: 50214460--50214624 Score: 147
Period size: 25 Copynumber: 6.6 Consensus size: 25
50214450 ATAACAACTC
* *
50214460 ACCACAAAGGATTTCCAGAGAATTCT
1 ACCACAAAGGCTTTCCAAAGAATT-T
*
50214486 -CCACAAAGGCTTTCCAAATG-ATAT
1 ACCACAAAGGCTTTCCAAA-GAATTT
* * *
50214510 GCCAC-AAGGACTTTTCAAAGAATTC
1 ACCACAAAGG-CTTTCCAAAGAATTT
* * *
50214535 ACCAAAAAGGCTTTCCAGAGAATTC
1 ACCACAAAGGCTTTCCAAAGAATTT
** * *
50214560 AATATAAAAGCTTTCCAAAGAATTT
1 ACCACAAAGGCTTTCCAAAGAATTT
* *
50214585 GCCACAAAGGCTTTCTAAAGAATTT
1 ACCACAAAGGCTTTCCAAAGAATTT
50214610 ACCACAAAGGCTTTC
1 ACCACAAAGGCTTTC
50214625 TAGCGAATTC
Statistics
Matches: 111, Mismatches: 23, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
24 6 0.05
25 100 0.90
26 5 0.05
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (25 bp):
ACCACAAAGGCTTTCCAAAGAATTT
Found at i:50225973 original size:3 final size:3
Alignment explanation
Indices: 50225965--50226055 Score: 173
Period size: 3 Copynumber: 30.3 Consensus size: 3
50225955 AATTAGTTAA
*
50225965 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
50226013 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
50226056 TTTTGAATAA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:50240054 original size:18 final size:18
Alignment explanation
Indices: 50240033--50240071 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
50240023 TTAGTTGTAA
50240033 TTTAGATTTTCTTTTAGT
1 TTTAGATTTTCTTTTAGT
* *
50240051 TTTAGTTTTTCTTTTTGT
1 TTTAGATTTTCTTTTAGT
50240069 TTT
1 TTT
50240072 CTATTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.05, G:0.10, T:0.74
Consensus pattern (18 bp):
TTTAGATTTTCTTTTAGT
Found at i:50240078 original size:18 final size:19
Alignment explanation
Indices: 50240038--50240084 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
50240028 TGTAATTTAG
* *
50240038 ATTTTCTTTTAGTTTTAGT
1 ATTTTCTTTTTGTTTTACT
50240057 -TTTTCTTTTTGTTTT-CT
1 ATTTTCTTTTTGTTTTACT
*
50240074 ATTTTATTTTT
1 ATTTTCTTTTT
50240085 CATGAGGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (19 bp):
ATTTTCTTTTTGTTTTACT
Found at i:50242886 original size:79 final size:79
Alignment explanation
Indices: 50242775--50242997 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 79
50242765 GCTCCTCGTT
* * * *
50242775 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
*
50242839 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
50242855 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
50242918 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * *
50242933 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
50242995 GGA
63 GGA
50242998 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.44
80 23 0.18
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:50242892 original size:39 final size:40
Alignment explanation
Indices: 50242775--50242997 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
50242765 GCTCCTCGTT
* * *
50242775 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
50242815 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
50242855 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
50242894 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
50242933 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
50242974 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50242998 CATCATTCAA
Statistics
Matches: 165, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:50250872 original size:39 final size:39
Alignment explanation
Indices: 50250755--50251016 Score: 329
Period size: 39 Copynumber: 6.6 Consensus size: 39
50250745 GCTCCTCGTT
*
50250755 CAAATGCCTTCGGGACATAGCCCGGTAA-TAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
* * *
50250795 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
50250835 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50250874 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50250913 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * * *
50250952 CAAATGCCTTAGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
50250993 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
50251017 CATCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
39 131 0.65
40 61 0.30
41 9 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:50263581 original size:23 final size:23
Alignment explanation
Indices: 50263534--50263610 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
50263524 TACAACACCT
**
50263534 AAGTGCCTG-AA-ACGACACACG
1 AAGTGCCTGAAATACGACACATA
*
50263555 AAGTGCCTGAAATATGACACATA
1 AAGTGCCTGAAATACGACACATA
* *
50263578 AAGTGCTTGAAATGCGACACATA
1 AAGTGCCTGAAATACGACACATA
50263601 AAGTGCCTGA
1 AAGTGCCTGA
50263611 TCGGCAAAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.19
22 2 0.04
23 36 0.77
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (23 bp):
AAGTGCCTGAAATACGACACATA
Found at i:50263959 original size:26 final size:25
Alignment explanation
Indices: 50263928--50263977 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
50263918 TAGTTCAATA
50263928 ATTCAATTCAAAC-CATTTCAATTTCT
1 ATTCAA-T-AAACACATTTCAATTTCT
*
50263954 ATTCAATAATCACATTTCAATTTC
1 ATTCAATAAACACATTTCAATTTC
50263978 ACTTTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.59
26 6 0.27
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTCAATAAACACATTTCAATTTCT
Found at i:50264365 original size:11 final size:11
Alignment explanation
Indices: 50264349--50264373 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50264339 TTAAATTTTC
50264349 CTATTCAATTT
1 CTATTCAATTT
50264360 CTATTCAATTT
1 CTATTCAATTT
50264371 CTA
1 CTA
50264374 CCTTAAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.52
Consensus pattern (11 bp):
CTATTCAATTT
Found at i:50264788 original size:11 final size:11
Alignment explanation
Indices: 50264768--50264802 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
50264758 AAAACCCTAG
50264768 TTTTTCCTTTTC
1 TTTTT-CTTTTC
50264780 TTTTTCTTTTC
1 TTTTTCTTTTC
50264791 TTCTTTCTTTTC
1 TT-TTTCTTTTC
50264803 CCCTGTTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:50268695 original size:22 final size:21
Alignment explanation
Indices: 50268662--50268716 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 21
50268652 CAAGTGCTCC
*
50268662 CACAACTAAATCAACAGTTAA
1 CACAACTAAATCAAAAGTTAA
50268683 CACAAGCTAAATCAAAAGTTAA
1 CACAA-CTAAATCAAAAGTTAA
50268705 CACAACCTAAAT
1 CACAA-CTAAAT
50268717 TAGTAACGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.53, C:0.24, G:0.05, T:0.18
Consensus pattern (21 bp):
CACAACTAAATCAAAAGTTAA
Found at i:50269260 original size:5 final size:5
Alignment explanation
Indices: 50269250--50269285 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
50269240 GGGGATTTAG
*
50269250 AAAAT AAAAT AAAAT AAAAT AAAAT -AATT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
50269286 TAAAAGATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 3 0.11
5 25 0.89
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:50269270 original size:15 final size:14
Alignment explanation
Indices: 50269250--50269285 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
50269240 GGGGATTTAG
50269250 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
*
50269265 AAAATAAAATAATT
1 AAAATAAAATAAAT
50269279 AAAATAA
1 AAAATAA
50269286 TAAAAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:50291892 original size:21 final size:21
Alignment explanation
Indices: 50291843--50291893 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
50291833 GCTTTATATC
*
50291843 AACTGCTGCTACAAATCTTTG
1 AACTGCTTCTACAAATCTTTG
*
50291864 AACTGCTTCTCCAAATCTTTG
1 AACTGCTTCTACAAATCTTTG
50291885 AACTGCTTC
1 AACTGCTTC
50291894 GTTGGTCTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (21 bp):
AACTGCTTCTACAAATCTTTG
Found at i:50293627 original size:28 final size:28
Alignment explanation
Indices: 50293595--50293653 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
50293585 AAAATTTAGG
*
50293595 ATTTAAGGTCCAAGATTCAAGTTAAAAA
1 ATTTAAGGTACAAGATTCAAGTTAAAAA
*
50293623 ATTTAGGGTACAAGATTCAAGTTAAAAA
1 ATTTAAGGTACAAGATTCAAGTTAAAAA
50293651 ATT
1 ATT
50293654 ACTAAAATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (28 bp):
ATTTAAGGTACAAGATTCAAGTTAAAAA
Found at i:50293792 original size:54 final size:54
Alignment explanation
Indices: 50293706--50293809 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
50293696 CATTAAATAA
* *
50293706 TTAATAAAAGATATAAAATGATATAATATCTTTGTTTCATATAATTTTTTTTCC
1 TTAATAAAAGATATAAAATGACATAATATCTTTATTTCATATAATTTTTTTTCC
* * * *
50293760 TTAATAAGAGATATAAAATGACGTAATGTCTTTATTTCGTATAATTTTTT
1 TTAATAAAAGATATAAAATGACATAATATCTTTATTTCATATAATTTTTT
50293810 CCAGAATATT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (54 bp):
TTAATAAAAGATATAAAATGACATAATATCTTTATTTCATATAATTTTTTTTCC
Found at i:50294192 original size:9 final size:9
Alignment explanation
Indices: 50294178--50294204 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
50294168 ATAGATCGAA
50294178 TAATTTTAG
1 TAATTTTAG
50294187 TAATTTTAG
1 TAATTTTAG
50294196 TAATTTTAG
1 TAATTTTAG
50294205 ATGGACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TAATTTTAG
Found at i:50294899 original size:29 final size:29
Alignment explanation
Indices: 50294866--50294948 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
50294856 TCCACATTGA
*
50294866 CACGAATTCTCAACGAACAAATTCTTTGT
1 CACGAACTCTCAACGAACAAATTCTTTGT
*
50294895 CACGAACTCTCAATGAACAAATTCTTTGT
1 CACGAACTCTCAACGAACAAATTCTTTGT
* *
50294924 CATGAACTCTCAACGAACAAGTTCT
1 CACGAACTCTCAACGAACAAATTCT
50294949 CTACCTCTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (29 bp):
CACGAACTCTCAACGAACAAATTCTTTGT
Found at i:50303439 original size:16 final size:17
Alignment explanation
Indices: 50303418--50303458 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
50303408 TTTCTATTTC
*
50303418 TTTATTATGTTT-TCAT
1 TTTATTATCTTTATCAT
50303434 TTTATTATCTTTATCAT
1 TTTATTATCTTTATCAT
50303451 TATTATTA
1 T-TTATTA
50303459 AAGTTACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.50
17 5 0.23
18 6 0.27
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTATTATCTTTATCAT
Found at i:50303781 original size:43 final size:43
Alignment explanation
Indices: 50303517--50303761 Score: 330
Period size: 43 Copynumber: 5.7 Consensus size: 43
50303507 AAAAAATGCT
* *
50303517 GCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAACGCC
* * * * *
50303560 ACTAAAGACCATGACCTTTAGCAGCCCTTTTATCACAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAACGCC
50303603 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAACGCC
* * *
50303646 GCGAAAGATCAAGACCTTTAGCTGCGCTTTTACCACAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAACGCC
* * * *
50303689 GCTAAAGAACAAGACTTTTAGCGTCGCTTTCT-CCAAAAACGCC
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTT-TACCACAAACGCC
* *
50303732 GCTAAAGAACAAGACCTTTAGCGGCACTTT
1 GCTAAAGACCAAGACCTTTAGCGGCGCTTT
50303762 CTCCAAAAAC
Statistics
Matches: 178, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
43 177 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (43 bp):
GCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCACAAACGCC
Found at i:50304855 original size:91 final size:91
Alignment explanation
Indices: 50304700--50305588 Score: 786
Period size: 91 Copynumber: 9.7 Consensus size: 91
50304690 CTTTAACACT
* ** * *
50304700 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATATCAATTAACAACATTTATA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAAA
*
50304765 CACCACAATTACAGCGATAAAACATC
66 CACCTCAATTACAGCGATAAAACATC
* *
50304791 TCAATTTCCAGCAACTAAACACTTCAATTTGCATCACTTAAACACT-TCAATTAACAACATTTAT
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAA
*
50304855 ACACCTCAATTACAGAGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
*
50304882 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAA
*
50304946 ACAACTCAATTACAGCGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
* * *
50304973 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACT-TCAATTTACAGCATTTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAA
* * * * *
50305037 ACACTTAAATTTGCAGC-ACTTAAACATA
65 ACACCTCAA-TTACAGCGA-TAAAACATC
** * ** * * * * ** * **
50305065 TCAATTAACAACATTTATACACCTCAATTAT--AGCGA-TAAAACATCTCAATTTCCAGCAACTA
1 TCAATTTCCAGCAACTAAACACTTCAATT-TGCAGC-ACTTAAACATATCAATTAACAACATTTA
* * *
50305127 AACACTTCAATTTGCAGC-ACTTAAACA-C
64 AACACCTCAA-TTACAGCGA-TAAAACATC
* ** * * *
50305155 TTCAATTTACAGCAGTTAAACACTTAAATTTGCAGCAGTTAAACATATCAATTAACAACATTTAT
1 -TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAA
50305220 ACACCTCAATTACAGCGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
* * *
50305247 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACACT-TCAATTTACAGCATTTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAA
* * * * * *
50305311 ACACTTAAATTTGCAAC-ACTTAAACATA
65 ACACCTCAA-TTACAGCGA-TAAAACATC
** * ** * * * * * * ** * **
50305339 TCAATTAACAACATTTATACACCTCAA-TTACAGTGA-TAAAACATCTCAATTTCCAGCAACTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAG-CACTTAAACATATCAATTAACAACATTTAA
* ** *
50305402 ACACTTCAATTTGTAGC-ACTTAAACA-C
65 ACACCTCAA-TTACAGCGA-TAAAACATC
* *
50305429 TTCAATTTGCAGC-ACTTAAACACTTCAATTTACAGCACTTAAACATATCAATTAACAACATTTA
1 -TCAATTTCCAGCAAC-TAAACACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTA
*
50305493 TACACCTCAATTACAGCGATAAAACATC
64 AACACCTCAATTACAGCGATAAAACATC
* * * *
50305521 TCAATTTCCAGCAACTAAATACTTCAATTTGCAACACTTAAACACT-TCAATTTACAGCATTTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAA
50305585 ACAC
65 ACAC
50305589 TTAAATTTAC
Statistics
Matches: 662, Mismatches: 111, Indels: 50
0.80 0.13 0.06
Matches are distributed among these distances:
90 3 0.00
91 519 0.78
92 139 0.21
93 1 0.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (91 bp):
TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAAA
CACCTCAATTACAGCGATAAAACATC
Found at i:50304932 original size:68 final size:65
Alignment explanation
Indices: 50304806--50305596 Score: 336
Period size: 68 Copynumber: 11.6 Consensus size: 65
50304796 TTCCAGCAAC
* * * ** * * * *
50304806 TAAACACTTCAATTTGCATCACTTAAACACTTCAATTAACAACATTTATACACCTCAATTACAGA
1 TAAACAC-TCAATTTACAGCA-ATAAACACTTCAATTTGCAGCACTTAAACACTTCAATTACAGA
50304871 GAT
64 -AT
* *
50304874 AAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTAACA-
1 TAAACA-CTCAATTTACAGCAA-TAAACACTTCAATTTGCAGCACTTAAACACTTCAATT-ACAG
50304938 ACATT
63 A-A-T
* * * * *
50304943 TATACAACTCAA-TTACAGCGATAAA-ACATCTCAATTTCCAGCAAC-TAAATACTTCAATTTGC
1 TAAAC-ACTCAATTTACAGCAATAAACAC-T-TCAATTTGCAGC-ACTTAAACACTTCAA-TTAC
*
50305005 AGCACT
61 AG-AAT
* *
50305011 TAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACA-TATCAATTAACA
1 TAAACAC-TCAATTTACAGCA-ATAAACACTTCAATTTGCAGCACTTAAACACT-TCAATT-ACA
50305075 -ACATT
62 GA-A-T
* * * * *
50305080 TATACACCTCAA-TTATAGCGATAAA-ACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTGC
1 TAAACA-CTCAATTTACAGCAATAAACAC-T-TCAATTTGCAGC-ACTTAAACACTTCAA-TTAC
*
50305142 AGCACT
61 AG-AAT
* * *
50305148 TAAACACTTCAATTTACAGCAGTTAAACACTTAAATTTGCAGCAGTTAAACA-TATCAATTAACA
1 TAAACAC-TCAATTTACAGCA-ATAAACACTTCAATTTGCAGCACTTAAACACT-TCAATT-ACA
50305212 -ACATT
62 GA-A-T
* * * * *
50305217 TATACACCTCAA-TTACAGCGATAAA-ACATCTCAATTTCCAGCAAC-TAAATACTTCAATTTGC
1 TAAACA-CTCAATTTACAGCAATAAACAC-T-TCAATTTGCAGC-ACTTAAACACTTCAA-TTAC
*
50305279 AGCACT
61 AG-AAT
* * *
50305285 TAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAACACTTAAACA-TATCAATTAACA
1 TAAACAC-TCAATTTACAGCA-ATAAACACTTCAATTTGCAGCACTTAAACACT-TCAATT-ACA
50305349 -ACATT
62 GA-A-T
* ** * **
50305354 TATACACCTCAA-TTACAGTGATAAA-ACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTGT
1 TAAACA-CTCAATTTACAGCAATAAACAC-T-TCAATTTGCAGC-ACTTAAACACTTCAA-TTAC
*
50305416 AGCACT
61 AG-AAT
* * *
50305422 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCACTTAAACA-TATCAATTAACA
1 TAAACAC-TCAATTTACAGCA-ATAAACACTTCAATTTGCAGCACTTAAACACT-TCAATT-ACA
50305486 -ACATT
62 GA-A-T
* * * * *
50305491 TATACACCTCAA-TTACAGCGATAAA-ACATCTCAATTTCCAGCAAC-TAAATACTTCAATTTGC
1 TAAACA-CTCAATTTACAGCAATAAACAC-T-TCAATTTGCAGC-ACTTAAACACTTCAA-TTAC
50305553 A-ACACT
61 AGA-A-T
* *
50305559 TAAACACTTCAATTTACAGCATTTAAACACTTAAATTT
1 TAAACAC-TCAATTTACAGCA-ATAAACACTTCAATTT
50305597 ACAAATCCAC
Statistics
Matches: 549, Mismatches: 93, Indels: 161
0.68 0.12 0.20
Matches are distributed among these distances:
66 10 0.02
67 35 0.06
68 261 0.48
69 199 0.36
70 34 0.06
71 10 0.02
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.30
Consensus pattern (65 bp):
TAAACACTCAATTTACAGCAATAAACACTTCAATTTGCAGCACTTAAACACTTCAATTACAGAAT
Found at i:50305482 original size:114 final size:114
Alignment explanation
Indices: 50304988--50305588 Score: 356
Period size: 114 Copynumber: 5.3 Consensus size: 114
50304978 TTCCAGCAAC
* * * * * * * * * *
50304988 TAAATACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAG
1 TAAACACTTCAATTTACAGCATTTAAACACATCAATTAACAACATTAAAACACCTCAATTTACAG
* * * * * *
50305053 CACTTAAACA-TATCAATTAACAACATTTATACACCTCAATTATAGC--GA-T
66 CAC-TAAACACT-TCAATTTACAGCACTTAAACACTTCAATT-T-GCAACACT
* * ** * ** * *
50305102 AAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTT-AAACACTTCAATTTAC
1 TAAACACT-TCAATTTACAGCATTTAAACACATCAATTAACAACA-TTAAAACACCTCAATTTAC
* * * * ** *
50305165 AGCAGTTAAACACTTAAATTTGCAGCAGTTAAACA-TATCAATTAACAACATT
64 AGCA-CTAAACACTTCAATTTACAGCACTTAAACACT-TCAATTTGCAACACT
* * * ** * * * * *
50305217 TATACACCTCAA-TTACAGCGA-TAAAACATC-TCAATTTCCAGCAACT-AAATACTTCAATTTG
1 TAAACACTTCAATTTACAGC-ATTTAAACA-CATCAATTAACAAC-ATTAAAACACCTCAATTTA
* *
50305278 CAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAACACT
63 CAGCAC-TAAACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAACACT
* * * * ** * *
50305331 TAAACA-TATCAATTAACAACATTTATACACCTCAATT-ACAGTGA-TAAAACATCTCAATTTCC
1 TAAACACT-TCAATTTACAGCATTTAAACACATCAATTAACA-ACATTAAAACACCTCAATTTAC
** *
50305393 AGCAACTAAACACTTCAATTTGTAGCACTTAAACACTTCAATTTGCAGCACT
64 AGC-ACTAAACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAACACT
* * * *
50305445 TAAACACTTCAATTTACAGCACTTAAACATATCAATTAACAACATTTATACACCTCAA-TTACAG
1 TAAACACTTCAATTTACAGCATTTAAACACATCAATTAACAACATTAAAACACCTCAATTTACAG
* *
50305509 CGA-TAAA-ACATCTCAATTTCCAGCAAC-TAAATACTTCAATTTGCAACACT
66 C-ACTAAACAC-T-TCAATTTACAGC-ACTTAAACACTTCAATTTGCAACACT
50305559 TAAACACTTCAATTTACAGCATTTAAACAC
1 TAAACACTTCAATTTACAGCATTTAAACAC
50305589 TTAAATTTAC
Statistics
Matches: 386, Mismatches: 74, Indels: 54
0.75 0.14 0.11
Matches are distributed among these distances:
112 3 0.01
113 7 0.02
114 326 0.84
115 50 0.13
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (114 bp):
TAAACACTTCAATTTACAGCATTTAAACACATCAATTAACAACATTAAAACACCTCAATTTACAG
CACTAAACACTTCAATTTACAGCACTTAAACACTTCAATTTGCAACACT
Found at i:50305599 original size:137 final size:137
Alignment explanation
Indices: 50304882--50305596 Score: 1252
Period size: 137 Copynumber: 5.2 Consensus size: 137
50304872 ATAAAACATC
* ** *
50304882 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTAACAACATTTAT
1 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACA-TATCAATTAACAACATTTAT
*
50304946 ACAACTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
65 ACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
50305011 TAAACACT
130 TAAACACT
50305019 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
1 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
* *
50305084 CACCTCAATTATAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTT
66 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
50305149 AAACACT
131 AAACACT
* *
50305156 TCAATTTACAGCAGTTAAACACTTAAATTTGCAGCAGTTAAACATATCAATTAACAACATTTATA
1 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
50305221 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
66 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
50305286 AAACACT
131 AAACACT
*
50305293 TCAATTTACAGCATTTAAACACTTAAATTTGCAACACTTAAACATATCAATTAACAACATTTATA
1 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
* * *
50305358 CACCTCAATTACAGTGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGTAGCACTT
66 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
50305423 AAACACT
131 AAACACT
* * * *
50305430 TCAATTTGCAGCACTTAAACACTTCAATTTACAGCACTTAAACATATCAATTAACAACATTTATA
1 TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
*
50305495 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAACACTT
66 CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
50305560 AAACACT
131 AAACACT
50305567 TCAATTTACAGCATTTAAACACTTAAATTT
1 TCAATTTACAGCATTTAAACACTTAAATTT
50305597 ACAAATCCAC
Statistics
Matches: 548, Mismatches: 29, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
136 1 0.00
137 547 1.00
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (137 bp):
TCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
CACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTT
AAACACT
Found at i:50308661 original size:40 final size:40
Alignment explanation
Indices: 50308611--50308747 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
50308601 TGGGCTTAGG
* * *
50308611 TTTTTTGCGGTGTTTTTCAAAAAAACGCCGCTAATGCTC-A
1 TTTTTAGCGGCGTTTTTC-AAAAAGCGCCGCTAATGCTCGA
* * * * ***
50308651 TTTTTCGCGGTGCTTTCCTGGAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
* **
50308691 TTTTTAGCGGCGTTTTACGTAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
50308731 TTTTTAGCGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
50308748 TATCTAAACG
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 16 0.20
40 65 0.80
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
Found at i:50308679 original size:39 final size:40
Alignment explanation
Indices: 50308636--50308742 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
50308626 TTCAAAAAAA
* * * *
50308636 CGCCGCTAATGCTC-ATTTTTCGCGGTGCTTT-CCTGGAAG
1 CGCCGCTAATGCTCGATTTTTAGCGGCGCTTTACGT-AAAG
*
50308675 CGCCGCTAATGCTCGATTTTTAGCGGCGTTTTACGTAAAG
1 CGCCGCTAATGCTCGATTTTTAGCGGCGCTTTACGTAAAG
50308715 CGCCGCTAATGCTCGATTTTTAGCGGCG
1 CGCCGCTAATGCTCGATTTTTAGCGGCG
50308743 TTTTTTATCT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
39 14 0.23
40 45 0.74
41 2 0.03
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (40 bp):
CGCCGCTAATGCTCGATTTTTAGCGGCGCTTTACGTAAAG
Found at i:50312145 original size:19 final size:19
Alignment explanation
Indices: 50312121--50312158 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
50312111 AAAGCAATGG
50312121 TAGTTT-TAATTATAGTTAT
1 TAGTTTCTAATTAT-GTTAT
*
50312140 TAGTTTCTAGTTATGTTAT
1 TAGTTTCTAATTATGTTAT
50312159 GATGTATGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (19 bp):
TAGTTTCTAATTATGTTAT
Found at i:50315713 original size:19 final size:19
Alignment explanation
Indices: 50315689--50315728 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
50315679 AACTAAGTCG
50315689 ATTTGTGATATTTATAACA
1 ATTTGTGATATTTATAACA
50315708 ATTTGTGATATTTATAACA
1 ATTTGTGATATTTATAACA
50315727 AT
1 AT
50315729 AAGTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (19 bp):
ATTTGTGATATTTATAACA
Found at i:50317340 original size:125 final size:125
Alignment explanation
Indices: 50317044--50317482 Score: 698
Period size: 125 Copynumber: 3.5 Consensus size: 125
50317034 GATAAAATCA
* * * *
50317044 AAGCAGGATGCTTTATCAGAAGAATTTCTGTAATAGCGCCCACGTGGACGCACTTTTGCTATAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
50317109 AGGTCCTGAAAAAATAATTTCGAGTTGATGTTTCTGAGAAAATAGTATAAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAAACGCTTC
*
50317170 AAGCAGGATGCTTTATCAGAAGACTTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
50317235 AGGTCCTGAAAAAATAATTTCGAATTGACATTTCTGAGCAAATAGTATAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * *
50317295 AAGCAGGATGCTTTATCAGAAAAATGTCTGAAATCCCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
50317360 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAATATAAAAAACACTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * *
50317420 AAGCAGGATGCTTTATCAGAAGAATTTATGAAATCGTGCCCTCGTGGACACGCTTTTTCTACA
1 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACA
50317483 TTAGCATGTT
Statistics
Matches: 288, Mismatches: 25, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
125 184 0.64
126 104 0.36
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:50320384 original size:19 final size:19
Alignment explanation
Indices: 50320360--50320410 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
50320350 ATCTAACATT
50320360 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
*
50320379 TTG-T--T-AATTGTATTAA
1 TTGTTAGTAAAAT-TATTAA
50320395 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
50320411 CAAATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 3 0.12
16 10 0.40
17 1 0.04
18 1 0.04
19 7 0.28
20 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:50320502 original size:102 final size:102
Alignment explanation
Indices: 50320326--50320520 Score: 363
Period size: 102 Copynumber: 1.9 Consensus size: 102
50320316 ATATTTTTTT
50320326 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
1 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
50320391 TTAATTGTTAGTAAAATTATCAAATTATTAATTGTTA
66 TTAATTGTTAGTAAAATTATCAAATTATTAATTGTTA
* *
50320428 GTACCAGTCAAAACATTTTGTAAAATCTAACATTTTGTTAGTCAAATTATTAATTGTTAATTGTA
1 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
*
50320493 TTAATTGTTAGTAAATTTATCAAATTAT
66 TTAATTGTTAGTAAAATTATCAAATTAT
50320521 ATCATATTAG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 90 1.00
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (102 bp):
GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTA
TTAATTGTTAGTAAAATTATCAAATTATTAATTGTTA
Found at i:50320622 original size:21 final size:21
Alignment explanation
Indices: 50320597--50320664 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
50320587 AAGGGTTACA
50320597 GTTAGGATTTTTAAGTTAAGG
1 GTTAGGATTTTTAAGTTAAGG
* *
50320618 GTTAGGGTTTTTAAGTTAATG
1 GTTAGGATTTTTAAGTTAAGG
*
50320639 GTTA-GAGTTTTAAGTTAAGG
1 GTTAGGATTTTTAAGTTAAGG
50320659 GTTAGG
1 GTTAGG
50320665 GTTAGGGTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 17 0.41
21 24 0.59
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (21 bp):
GTTAGGATTTTTAAGTTAAGG
Found at i:50320628 original size:20 final size:20
Alignment explanation
Indices: 50320605--50320667 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
50320595 CAGTTAGGAT
50320605 TTTTAAGTTAAGGGTTAGGG
1 TTTTAAGTTAAGGGTTAGGG
* *
50320625 TTTTTAAGTTAATGGTTAGAG
1 -TTTTAAGTTAAGGGTTAGGG
50320646 TTTTAAGTTAAGGGTTAGGG
1 TTTTAAGTTAAGGGTTAGGG
50320666 TT
1 TT
50320668 AGGGTTAGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
20 20 0.53
21 18 0.47
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (20 bp):
TTTTAAGTTAAGGGTTAGGG
Found at i:50321245 original size:18 final size:18
Alignment explanation
Indices: 50321219--50321261 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
50321209 GACTCGAAAA
* * *
50321219 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
50321237 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
50321255 AGGATAC
1 AGGATAC
50321262 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:50321915 original size:7 final size:7
Alignment explanation
Indices: 50321903--50321934 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
50321893 TATTAGTTAT
50321903 ATACATA
1 ATACATA
50321910 ATACATA
1 ATACATA
50321917 ATACATA
1 ATACATA
50321924 ATACATA
1 ATACATA
50321931 ATAC
1 ATAC
50321935 TAAATACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:50322155 original size:21 final size:21
Alignment explanation
Indices: 50322115--50322155 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50322105 CTATTATTTT
*
50322115 TAAAAATCTACATAATAATTG
1 TAAAAATCTACATAAAAATTG
50322136 TAAAAATCTA-ATATAAAATT
1 TAAAAATCTACATA-AAAATT
50322156 TACCTCGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (21 bp):
TAAAAATCTACATAAAAATTG
Found at i:50323154 original size:11 final size:11
Alignment explanation
Indices: 50323142--50323191 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
50323132 AAATATGGAT
50323142 TTGAGA-GAAA
1 TTGAGAGGAAA
50323152 TTTG-GAAGGAAA
1 -TTGAGA-GGAAA
50323164 TTGAGAGGAAA
1 TTGAGAGGAAA
50323175 TTGAGAGGAAA
1 TTGAGAGGAAA
50323186 TTGAGA
1 TTGAGA
50323192 AAATAATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.06
11 28 0.78
12 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:50325513 original size:16 final size:18
Alignment explanation
Indices: 50325487--50325534 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
50325477 TATAATTAGA
50325487 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
50325504 TAAA-TAATTTTCTCAAT
1 TAAATTAATTTTCTCAAT
*
50325521 CTAATTTTAATTTT
1 -TAA-ATTAATTTT
50325535 GTTAAAGTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 9 0.35
18 3 0.12
20 7 0.27
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:50325924 original size:16 final size:16
Alignment explanation
Indices: 50325903--50325937 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
50325893 TTATACACTT
50325903 ATTTAGTCACGAAGTC
1 ATTTAGTCACGAAGTC
50325919 ATTTAGTCACGAAGTC
1 ATTTAGTCACGAAGTC
50325935 ATT
1 ATT
50325938 CCACTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (16 bp):
ATTTAGTCACGAAGTC
Found at i:50326993 original size:20 final size:20
Alignment explanation
Indices: 50326954--50326993 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50326944 TGTTAATTAG
* *
50326954 ATTAAAATAAGCTTAGTTTA
1 ATTAAAATAAGATTAATTTA
*
50326974 ATTAAAGTAAGATTAATTTA
1 ATTAAAATAAGATTAATTTA
50326994 CATAATTAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (20 bp):
ATTAAAATAAGATTAATTTA
Found at i:50327412 original size:32 final size:32
Alignment explanation
Indices: 50327374--50327437 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
50327364 AATGTGAAAT
50327374 TGATTATAGAAATAAGAAATAATGTTTCCCTA
1 TGATTATAGAAATAAGAAATAATGTTTCCCTA
50327406 TGATTATAGAAATAAGAAATAATGTTTCCCTA
1 TGATTATAGAAATAAGAAATAATGTTTCCCTA
50327438 AAGGGTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (32 bp):
TGATTATAGAAATAAGAAATAATGTTTCCCTA
Found at i:50328824 original size:19 final size:20
Alignment explanation
Indices: 50328773--50328824 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
50328763 ACCACTAAAG
50328773 AAATATCAATACCTTTCACTA
1 AAATATCAATA-CTTTCACTA
* * * *
50328794 GAGTATCGATACTTT-AGTA
1 AAATATCAATACTTTCACTA
50328813 AAATATCAATAC
1 AAATATCAATAC
50328825 CAAAATGAGC
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
19 12 0.50
20 4 0.17
21 8 0.33
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATATCAATACTTTCACTA
Found at i:50333905 original size:20 final size:20
Alignment explanation
Indices: 50333882--50333922 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50333872 CATAATATTG
*
50333882 GCAGCTTGTCTACAGTACTA
1 GCAGCTTATCTACAGTACTA
* *
50333902 GCAGTTTATCTACATTACTA
1 GCAGCTTATCTACAGTACTA
50333922 G
1 G
50333923 TGGCTCAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (20 bp):
GCAGCTTATCTACAGTACTA
Found at i:50334857 original size:21 final size:20
Alignment explanation
Indices: 50334811--50334864 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
50334801 TGAAGCTAAA
* *
50334811 AATGGTATCAATA-CTTGAC
1 AATGGTATCGATACCTTAAC
*
50334830 AAAGGTATCGATACCTATAAC
1 AATGGTATCGATACCT-TAAC
50334851 AATGGTATCGATAC
1 AATGGTATCGATAC
50334865 TTCATGTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 11 0.38
20 2 0.07
21 16 0.55
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (20 bp):
AATGGTATCGATACCTTAAC
Found at i:50339445 original size:16 final size:16
Alignment explanation
Indices: 50339424--50339461 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
50339414 AAGATTAAAC
*
50339424 AATAAAAATAAGATTT
1 AATAAAAATAACATTT
50339440 AAT-AAAATAACATTT
1 AATAAAAATAACATTT
*
50339455 AACAAAA
1 AATAAAA
50339462 CATTCATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (16 bp):
AATAAAAATAACATTT
Found at i:50339913 original size:17 final size:17
Alignment explanation
Indices: 50339891--50339929 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
50339881 CATTACAGAC
50339891 ATCTGTCAACTACGGAA
1 ATCTGTCAACTACGGAA
*
50339908 ATCTGTCAACTACGGCA
1 ATCTGTCAACTACGGAA
50339925 ATCTG
1 ATCTG
50339930 GACAGCTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (17 bp):
ATCTGTCAACTACGGAA
Found at i:50344941 original size:41 final size:41
Alignment explanation
Indices: 50344896--50345040 Score: 265
Period size: 41 Copynumber: 3.5 Consensus size: 41
50344886 GACTTTAAGT
50344896 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
50344937 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
50344978 CTAGCAGGCTAAGTGCCGGTGAT-TGGAATCAGGCTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCT-GAATCAGGTTATAAAC
50345019 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
50345041 ATATGTTAAA
Statistics
Matches: 102, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
40 1 0.01
41 101 0.99
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:50355131 original size:12 final size:12
Alignment explanation
Indices: 50355095--50355136 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
50355085 TAAGTTAAAT
*
50355095 ATTAAAATAAG-
1 ATTAAAATATGA
50355106 ATTAAAAATGATGA
1 ATT-AAAAT-ATGA
50355120 ATTAAAATATGA
1 ATTAAAATATGA
50355132 ATTAA
1 ATTAA
50355137 TTTATCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 3 0.11
12 14 0.52
13 7 0.26
14 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (12 bp):
ATTAAAATATGA
Found at i:50368476 original size:12 final size:12
Alignment explanation
Indices: 50368440--50368481 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
50368430 TAAGTTAAAT
*
50368440 ATTAAAATAAG-
1 ATTAAAATATGA
50368451 ATTAAAAATGATGA
1 ATT-AAAAT-ATGA
50368465 ATTAAAATATGA
1 ATTAAAATATGA
50368477 ATTAA
1 ATTAA
50368482 TTTATCTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 3 0.11
12 14 0.52
13 7 0.26
14 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (12 bp):
ATTAAAATATGA
Found at i:50371590 original size:19 final size:19
Alignment explanation
Indices: 50371566--50371605 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50371556 ACTAAGTTAG
* *
50371566 ATAAAACTAATAAAACAAA
1 ATAAAAATAACAAAACAAA
*
50371585 ATAAAAATAACAAAACCAA
1 ATAAAAATAACAAAACAAA
50371604 AT
1 AT
50371606 TTCACCAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.15
Consensus pattern (19 bp):
ATAAAAATAACAAAACAAA
Found at i:50377352 original size:17 final size:17
Alignment explanation
Indices: 50377330--50377362 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50377320 TGAAAGAACA
*
50377330 GTGAAAACGAGAATGAT
1 GTGAAAACGAAAATGAT
50377347 GTGAAAACGAAAATGA
1 GTGAAAACGAAAATGA
50377363 AATAGATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.27, T:0.15
Consensus pattern (17 bp):
GTGAAAACGAAAATGAT
Found at i:50385259 original size:27 final size:26
Alignment explanation
Indices: 50385191--50385260 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
50385181 CCTTTACATA
**
50385191 TATGCTCACACGAGCTGTGGAAAGAG
1 TATGCTCACACGAGCTGTAAAAAGAG
*
50385217 TATGCTCACACGAGCTGTAAAAATGGG
1 TATGCTCACACGAGCTGTAAAAA-GAG
* *
50385244 TCTGCTCACACAAGCTG
1 TATGCTCACACGAGCTG
50385261 AAGGTCGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (26 bp):
TATGCTCACACGAGCTGTAAAAAGAG
Found at i:50391914 original size:15 final size:15
Alignment explanation
Indices: 50391894--50391924 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50391884 CCATATTTCA
50391894 ACCACATCCAAACAT
1 ACCACATCCAAACAT
*
50391909 ACCACATTCAAACAT
1 ACCACATCCAAACAT
50391924 A
1 A
50391925 TAAAAACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (15 bp):
ACCACATCCAAACAT
Found at i:50392516 original size:26 final size:26
Alignment explanation
Indices: 50392448--50392518 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
50392438 CCTTTACATA
* * *
50392448 TATGCTCACACAAGCTATGGAAAGAG
1 TATGCTCACACGAGCTGTGAAAAGAG
50392474 TATGCTCACACGAGCTGTGAAAATG-G
1 TATGCTCACACGAGCTGTGAAAA-GAG
*
50392500 TCTGCTCACACGAGCTGTG
1 TATGCTCACACGAGCTGTG
50392519 GGTTAAAACG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 39 0.98
27 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (26 bp):
TATGCTCACACGAGCTGTGAAAAGAG
Found at i:50394086 original size:13 final size:14
Alignment explanation
Indices: 50394054--50394092 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
50394044 TTTTTTTATG
50394054 TTTCTTCTTCCTACCA
1 TTTCTT-TT-CTACCA
50394070 TTTCTTTTCTACC-
1 TTTCTTTTCTACCA
50394083 TTTCTTTTCT
1 TTTCTTTTCT
50394093 TCTCTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.43
14 5 0.22
15 2 0.09
16 6 0.26
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTCTTTTCTACCA
Found at i:50394266 original size:19 final size:18
Alignment explanation
Indices: 50394202--50394266 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 18
50394192 AATAGCGTAA
50394202 GTTTTGTTATGAATTTTT
1 GTTTTGTTATGAATTTTT
* *
50394220 GTTAATGTTCAT--TTTTTT
1 GTT-TTGTT-ATGAATTTTT
50394238 AAGTTTTGTTATGAATTTTT
1 --GTTTTGTTATGAATTTTT
50394258 GTTTATGTT
1 GTTT-TGTT
50394267 TGTTTCTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 13
0.68 0.08 0.25
Matches are distributed among these distances:
18 14 0.39
19 12 0.33
20 10 0.28
ACGTcount: A:0.18, C:0.02, G:0.15, T:0.65
Consensus pattern (18 bp):
GTTTTGTTATGAATTTTT
Found at i:50396742 original size:5 final size:5
Alignment explanation
Indices: 50396732--50396796 Score: 130
Period size: 5 Copynumber: 13.0 Consensus size: 5
50396722 TTTATTAACA
50396732 ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT
1 ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT ATGTT
50396782 ATGTT ATGTT ATGTT
1 ATGTT ATGTT ATGTT
50396797 TATACGGTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
ATGTT
Found at i:50396824 original size:13 final size:13
Alignment explanation
Indices: 50396808--50396834 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50396798 ATACGGTAAG
50396808 TTTTATCCAACTA
1 TTTTATCCAACTA
50396821 TTTTATCCAACTA
1 TTTTATCCAACTA
50396834 T
1 T
50396835 CTTTCAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTATCCAACTA
Found at i:50402450 original size:6 final size:6
Alignment explanation
Indices: 50402439--50402463 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
50402429 ATGCTCTTTG
50402439 TTTATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT T
50402464 GGAATTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:50402550 original size:19 final size:18
Alignment explanation
Indices: 50402508--50402547 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
50402498 GATATTTTTA
*
50402508 TTTTAATGTTTTTAGTAT
1 TTTTAATGTTTATAGTAT
50402526 TTTTAATGTATTATA-TAT
1 TTTTAATGT-TTATAGTAT
50402544 TTTT
1 TTTT
50402548 TAAAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (18 bp):
TTTTAATGTTTATAGTAT
Found at i:50408358 original size:3 final size:3
Alignment explanation
Indices: 50408350--50408388 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
50408340 CAAGAAAACT
50408350 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50408389 CAAATAATCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50411141 original size:29 final size:27
Alignment explanation
Indices: 50411107--50411171 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 27
50411097 GTTTTACGTG
* *
50411107 TATAATTGCATTAAATTAAAGTTCATGTA
1 TATAATTACATAAAATTAAAGTTCA--TA
50411136 TATAATTTTACATAAAATTAAAGTTCATA
1 TATAA--TTACATAAAATTAAAGTTCATA
50411165 TATAATT
1 TATAATT
50411172 TTGAAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 2 0.06
29 12 0.38
31 18 0.56
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (27 bp):
TATAATTACATAAAATTAAAGTTCATA
Found at i:50414824 original size:16 final size:17
Alignment explanation
Indices: 50414803--50414835 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
50414793 ATGTTTTCTC
50414803 TCTTTT-CTCTCTTTTT
1 TCTTTTCCTCTCTTTTT
*
50414819 TCTTTTCCTTTCTTTTT
1 TCTTTTCCTCTCTTTTT
50414836 CTTGTTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TCTTTTCCTCTCTTTTT
Found at i:50414845 original size:8 final size:8
Alignment explanation
Indices: 50414796--50414851 Score: 51
Period size: 9 Copynumber: 6.5 Consensus size: 8
50414786 AAGTTTGATG
50414796 TTTTCTCTC
1 TTTTCT-TC
50414805 TTTTCTCTC
1 TTTTCT-TC
50414814 TTTT-TTC
1 TTTTCTTC
50414821 TTTTCCTTTC
1 TTTT-C-TTC
*
50414831 TTTTTCTTG
1 -TTTTCTTC
50414840 TTTTCTTC
1 TTTTCTTC
50414848 TTTT
1 TTTT
50414852 GTTTGATTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
7 6 0.15
8 12 0.29
9 15 0.37
10 4 0.10
11 4 0.10
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (8 bp):
TTTTCTTC
Found at i:50419485 original size:86 final size:83
Alignment explanation
Indices: 50419357--50419512 Score: 215
Period size: 86 Copynumber: 1.8 Consensus size: 83
50419347 ATTCGATGAA
* *
50419357 TTCATCAAGTCCGTCAATAGACCACCCAAAATTTGGGATATGAACTCATTAAGAGTAATAAAATC
1 TTCATCAAGTCCGTCAATAGACCACCCAAAATCTAGGATATGAACTCATTAAGAGTAAT-AAATC
50419422 AACCTTTCAAGTTGGTGAC
65 AACCTTTCAAGTTGGTGAC
* * * *
50419441 TTCATCAAGTCCGTCTCAATAGGACCA-CCAAACTCTAGGCTATGAATTCATTAAGAGTAATAAC
1 TTCATCAAGTCCG--TCAATA-GACCACCCAAAATCTAGGATATGAACTCATTAAGAGTAATAAA
50419505 TCAACCTT
63 TCAACCTT
50419513 ATGCATGCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
84 13 0.21
85 10 0.16
86 35 0.56
87 5 0.08
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (83 bp):
TTCATCAAGTCCGTCAATAGACCACCCAAAATCTAGGATATGAACTCATTAAGAGTAATAAATCA
ACCTTTCAAGTTGGTGAC
Found at i:50420735 original size:15 final size:15
Alignment explanation
Indices: 50420710--50420744 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50420700 GATTCTATTT
*
50420710 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
50420724 TAATTAATATTAAGA
1 TAATTAATATTAAGA
50420739 TAATTA
1 TAATTA
50420745 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:50424695 original size:4 final size:4
Alignment explanation
Indices: 50424686--50424764 Score: 67
Period size: 4 Copynumber: 19.5 Consensus size: 4
50424676 CCAATTTTTA
*
50424686 TATT TATT TATT TATT TATT TA-T TATTT TCTT TACTT TATT TA-T TACTT
1 TATT TATT TATT TATT TATT TATT TA-TT TATT TA-TT TATT TATT TA-TT
*
50424735 TATTT TATT T-TAT TATT TA-T TAAT TATT TA
1 TA-TT TATT TAT-T TATT TATT TATT TATT TA
50424765 GATATTAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
3 10 0.16
4 39 0.62
5 14 0.22
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:50424750 original size:21 final size:20
Alignment explanation
Indices: 50424689--50424755 Score: 72
Period size: 21 Copynumber: 3.5 Consensus size: 20
50424679 ATTTTTATAT
50424689 TTATTTA-TTTATTTATTTA
1 TTATTTATTTTATTTATTTA
50424708 TTATTT-TCTTTACTTTATTTA
1 TTATTTAT-TTTA-TTTATTTA
50424729 TTACTTTATTTTA--T-TTTA
1 TTA-TTTATTTTATTTATTTA
50424747 TTATTTATT
1 TTATTTATT
50424756 AATTATTTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
17 6 0.14
18 7 0.16
19 7 0.16
20 4 0.09
21 11 0.26
22 7 0.16
23 1 0.02
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (20 bp):
TTATTTATTTTATTTATTTA
Found at i:50426084 original size:101 final size:100
Alignment explanation
Indices: 50425894--50426082 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 100
50425884 AAGAACATGT
* *
50425894 TGGGCTGAGTAATCAGGGTGAGGTGCTTGGCTGTCATCTCTTTTCGCGTCAAAAGGTTCGATGTG
1 TGGGCTGAGTAATCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCGATATG
*
50425959 TTCTTAAGAAAAAATTATAATAAATTAGGAGTCTGC
66 TTCTAAAGAAAAAA-TATAATAAATTAGGAGTCTGC
* *
50425995 TGGGCTGAGTAA-CTGGGGTGAGGTTCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAGTAT
1 TGGGCTGAGTAATC-AGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTC-G-AT
50426059 AT-TTCTAAAGCATAAAAAATATAA
63 ATGTTCTAAAG---AAAAAATATAA
50426083 ATAATAAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
100 1 0.01
101 54 0.70
102 8 0.10
103 3 0.04
104 5 0.06
105 6 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (100 bp):
TGGGCTGAGTAATCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCGATATG
TTCTAAAGAAAAAATATAATAAATTAGGAGTCTGC
Found at i:50426710 original size:15 final size:15
Alignment explanation
Indices: 50426685--50426719 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50426675 GACTATATTT
*
50426685 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
50426699 TAATTAATATTAAGA
1 TAATTAATATTAAGA
50426714 TAATTA
1 TAATTA
50426720 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:50426735 original size:18 final size:17
Alignment explanation
Indices: 50426723--50426755 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50426713 ATAATTATTA
50426723 AGGA-TTATTTAATTTT
1 AGGATTTATTTAATTTT
50426739 AGGATTTTATTTAATTT
1 AGGA-TTTATTTAATTT
50426756 ATCTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (17 bp):
AGGATTTATTTAATTTT
Found at i:50437584 original size:6 final size:6
Alignment explanation
Indices: 50437573--50437599 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
50437563 GTTATTCATT
50437573 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
50437600 TATAAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:50443458 original size:20 final size:21
Alignment explanation
Indices: 50443423--50443470 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
50443413 ATTTTTTATT
50443423 ATTTTAAAAATATAATATAAA
1 ATTTTAAAAATATAATATAAA
* **
50443444 ATTTT-AAATTATAATATATT
1 ATTTTAAAAATATAATATAAA
50443464 ATTTTAA
1 ATTTTAA
50443471 TCATATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTTAAAAATATAATATAAA
Found at i:50444219 original size:19 final size:18
Alignment explanation
Indices: 50444190--50444236 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
50444180 AATCCATTAA
*
50444190 ATTTAAAATATATGAATT
1 ATTTAATATATATGAATT
*
50444208 ACTTTAATATATATTAATT
1 A-TTTAATATATATGAATT
*
50444227 ATTAAATATA
1 ATTTAATATA
50444237 ACAAATCTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
ATTTAATATATATGAATT
Found at i:50444852 original size:31 final size:31
Alignment explanation
Indices: 50444791--50444881 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
50444781 AAAAAAACTT
* * *
50444791 AATAGCTTAGTGACTTTTAATAAAAGCTTTCG
1 AATAGTTTAGTGAC-TTAAATAAAAACTTTCG
*
50444823 AATAGTTTAGTAACTTAAATAAAAACTTTCG
1 AATAGTTTAGTGACTTAAATAAAAACTTTCG
* * * *
50444854 AACAATTTAGTGA-TTAAATTATAACTTT
1 AATAGTTTAGTGACTTAAATAAAAACTTT
50444882 TTAGTTAAGT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
30 13 0.26
31 25 0.50
32 12 0.24
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (31 bp):
AATAGTTTAGTGACTTAAATAAAAACTTTCG
Found at i:50445957 original size:13 final size:13
Alignment explanation
Indices: 50445939--50445963 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50445929 TTTTTGTTAA
50445939 TTTTTAATTAATG
1 TTTTTAATTAATG
50445952 TTTTTAATTAAT
1 TTTTTAATTAAT
50445964 AAATATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:50447916 original size:13 final size:13
Alignment explanation
Indices: 50447898--50447934 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
50447888 CTTGAAGAGC
50447898 ACTTTTCTAAAAT
1 ACTTTTCTAAAAT
50447911 ACTTTT-TAAAAAT
1 ACTTTTCT-AAAAT
50447924 ACTTTTC-AAAA
1 ACTTTTCTAAAA
50447935 GCATTACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
ACTTTTCTAAAAT
Found at i:50463908 original size:22 final size:22
Alignment explanation
Indices: 50463867--50463914 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
50463857 CTAAAATCTT
*
50463867 GAGACAATTTGCCATATGTCTC
1 GAGACAATTTGCCATATGTCTA
50463889 GAGACAATTT-CTCGAT-TGTCTA
1 GAGACAATTTGC-C-ATATGTCTA
50463911 GAGA
1 GAGA
50463915 TAGGGCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.04
22 20 0.87
23 2 0.09
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (22 bp):
GAGACAATTTGCCATATGTCTA
Found at i:50466064 original size:67 final size:67
Alignment explanation
Indices: 50465774--50466064 Score: 306
Period size: 67 Copynumber: 4.3 Consensus size: 67
50465764 AGGTTTAAGG
** *
50465774 TGTAAGACCATAAATCGACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
1 TGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCTACTAGGACATTAAACATAGGGTTAAA
*
50465839 TG
66 TA
* * * *
50465841 TGTAAGATCATAGCTTGACTATGACAA-C-ATGTGTAGTCTA-TCAGGACATTAAACATGGGGTT
1 TGTAAGACCATAGCTCGACTATGACAACCAAT-AG-AGTCTACT-AGGACATTAAACATAGGGTT
*
50465903 ACATA
63 AAATA
** * *
50465908 TGTAAGACCATAAATCAACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
1 TGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCTACTAGGACATTAAACATAGGGTTAAA
*
50465973 TG
66 TA
* * * *
50465975 TGTAAGATCATAGCTTGACTATGACAA-C-ATGTGTAGTCTA-TCAGGACATTAAACATGGGGTT
1 TGTAAGACCATAGCTCGACTATGACAACCAAT-AG-AGTCTACT-AGGACATTAAACATAGGGTT
*
50466037 ACATA
63 AAATA
*
50466042 TGTAAGACCATAGCTCGTCTATG
1 TGTAAGACCATAGCTCGACTATG
50466065 GCAATAAATA
Statistics
Matches: 183, Mismatches: 32, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
65 4 0.02
66 6 0.03
67 168 0.92
68 3 0.02
69 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (67 bp):
TGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCTACTAGGACATTAAACATAGGGTTAAA
TA
Found at i:50466064 original size:134 final size:134
Alignment explanation
Indices: 50465774--50466053 Score: 551
Period size: 134 Copynumber: 2.1 Consensus size: 134
50465764 AGGTTTAAGG
50465774 TGTAAGACCATAAATCGACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
1 TGTAAGACCATAAATCGACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
50465839 TGTGTAAGATCATAGCTTGACTATGACAACATGTGTAGTCTATCAGGACATTAAACATGGGGTTA
66 TGTGTAAGATCATAGCTTGACTATGACAACATGTGTAGTCTATCAGGACATTAAACATGGGGTTA
50465904 CATA
131 CATA
*
50465908 TGTAAGACCATAAATCAACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
1 TGTAAGACCATAAATCGACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
50465973 TGTGTAAGATCATAGCTTGACTATGACAACATGTGTAGTCTATCAGGACATTAAACATGGGGTTA
66 TGTGTAAGATCATAGCTTGACTATGACAACATGTGTAGTCTATCAGGACATTAAACATGGGGTTA
50466038 CATA
131 CATA
50466042 TGTAAGACCATA
1 TGTAAGACCATA
50466054 GCTCGTCTAT
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 145 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (134 bp):
TGTAAGACCATAAATCGACTATGACAACCAATAGAGTCTACTAGGACATTAAGCATAGGGTTAAA
TGTGTAAGATCATAGCTTGACTATGACAACATGTGTAGTCTATCAGGACATTAAACATGGGGTTA
CATA
Found at i:50468119 original size:17 final size:19
Alignment explanation
Indices: 50468089--50468125 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
50468079 AAACATTTAT
50468089 TTTTTAATGATATT-TGCA
1 TTTTTAATGATATTATGCA
*
50468107 TTTTTATTG-TATTATGCA
1 TTTTTAATGATATTATGCA
50468125 T
1 T
50468126 ACTCTATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.59
Consensus pattern (19 bp):
TTTTTAATGATATTATGCA
Found at i:50468322 original size:123 final size:123
Alignment explanation
Indices: 50468099--50468346 Score: 442
Period size: 123 Copynumber: 2.0 Consensus size: 123
50468089 TTTTTAATGA
*
50468099 TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTTCATCAATTGTATATCTATATACTTA
1 TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTCCATCAATTGTATATCTATATACTTA
* *
50468164 CTATTATTTAAGTTATTGACTAAGGTGGTGTCACGAATTGACCAGGCACCAACTTGGT
66 CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTGGT
* *
50468222 TATTTGCATTTTTATTGTATTATGCATACTCTATTATCTCCATCAATTGTATATCTATATAGTTA
1 TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTCCATCAATTGTATATCTATATACTTA
*
50468287 CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTTGT
66 CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTGGT
50468345 TA
1 TA
50468347 GGGAAATTAT
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 119 1.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (123 bp):
TATTTGCATTTTTATTGTATTATGCATACTCTATTACCTCCATCAATTGTATATCTATATACTTA
CTATTATTTAAGTCATTGACTAAGGTGGTGCCACGAATTGACCAGGCACCAACTTGGT
Found at i:50472955 original size:131 final size:131
Alignment explanation
Indices: 50472654--50473178 Score: 804
Period size: 131 Copynumber: 4.0 Consensus size: 131
50472644 CTCCTGGGGA
*
50472654 AGATAAGATCCGCAATCTT-CAACCTA-TCCCACTGCTGACCAGGGACATAA-GACTTGTGGCTT
1 AGATAAGATCTGCAAT-TTCCAACCTACT-CCACTGCTGACCAGGGACA-AAGGACTTGTGGCTT
** * *
50472716 AAATCTGTTTCCCTACTCCTAAGGAAGATAAGATTCGCTGTCTTTTGATCTGCTCCACTATTGCT
63 AAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTC-TTCGATCTGCTCCACTATTGCT
50472781 TAGGG
127 TAGGG
* *
50472786 AGATAAGATCTGAAATTTCCAACCTACTCCACTCCTGACCAGGGACAAAGGACTTGTGGCTTAAA
1 AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
* * * * *
50472851 TCTGTTTTCGTAGTCCTGGGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTATTGTTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
50472916 G
131 G
* * * *
50472917 AGATAAGATCTGCTATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAA
1 AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
*
50472982 TCTGTTTCCCTACTCCTGTGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
50473047 G
131 G
* * * *
50473048 AAATAAGATCTGCAATTTCTAACCTACTCCACTGCTGACCAGGGACATAGGACTTGTAGCTTAAA
1 AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
50473113 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
66 TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
50473178 G
131 G
50473179 TTTAGGGTTT
Statistics
Matches: 359, Mismatches: 31, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
131 272 0.76
132 86 0.24
133 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (131 bp):
AGATAAGATCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACAAAGGACTTGTGGCTTAAA
TCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGG
G
Found at i:50486112 original size:124 final size:124
Alignment explanation
Indices: 50485886--50486235 Score: 574
Period size: 124 Copynumber: 2.8 Consensus size: 124
50485876 CACAAACATG
* * *
50485886 CTACTGTAGCAAAAGCGTGCCCATGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
50485951 TAGAAGCGATTTTATACTATTTGGTCAGAAAGGTCAAAAAAAAATATTTCTTACATGAC
66 TAAAAGCGATTTTATACTATTTGCTCAGAAAGGTCAAAAAAAAATATTTCTTACATGAC
* *
50486010 CTACTGTAGCAAAAGCGCGTCCACGAGGCTGCGATTTCACAAATTCTTCTCAAATAACATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
** *
50486075 TAAAAGCGATTTTATACTATTTGCTCAGAAATTTCAAAAAAAATTATTTCTTACATGAC
66 TAAAAGCGATTTTATACTATTTGCTCAGAAAGGTCAAAAAAAAATATTTCTTACATGAC
* *
50486134 CTACTGTAGCAAAAGTGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTTAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
50486199 TAAAAGTGATTTTATACTATTTGCTCAGAAAGATCAA
66 TAAAAGCGATTTTATACTATTTGCTCAGAAAGGTCAA
50486236 CTCGAAATTA
Statistics
Matches: 209, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
124 209 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAAAAGCGATTTTATACTATTTGCTCAGAAAGGTCAAAAAAAAATATTTCTTACATGAC
Found at i:50490900 original size:533 final size:533
Alignment explanation
Indices: 50489889--50490951 Score: 1892
Period size: 533 Copynumber: 2.0 Consensus size: 533
50489879 ACTCCATTCT
* *
50489889 CAAAATATCTACTAGATAAAATGTGTTGTATTTAGCATATCGCAATATTTTCGAGCATCAAATAT
1 CAAAATATCTACTAGATAAAAGGTGTTGTATTTAGCATATCGCAATATTTTCAAGCATCAAATAT
*
50489954 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTGCTATTACCTTTACAAAC
66 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
* *
50490019 TTTGGCATGCTTAATTCGGTCTGACCAAAAAAGAGAAGGAAATAGAAAATTTGAAGTTCAATAAC
131 TTTGGCATGCTCAATTCGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAATAAC
50490084 TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
196 TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
* *
50490149 GGTCAACAAGGGAAAATGATTGTGTACACTGATATGGACTAAACACAATTGTAAAGCACATATTT
261 AGTCAACAAGGGAAAATGATTGTGTACACTAATATGGACTAAACACAATTGTAAAGCACATATTT
*
50490214 ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACTAGCATAAGAACACAATGTACTTA
326 ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
*
50490279 ACTGAAACATCAATGAAAACCCAGAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
391 ACTGAAACATCAATGAAAACCCAAAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
50490344 CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGGAAGC
456 CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGGAAGC
*
50490409 TGAACTGTCTGAC
521 AGAACTGTCTGAC
* *
50490422 CAAAGTATCTACTAGATAAAAGGTGTTGTATTTAGCATATTGCAATATTTTCAAGCATCAAATAT
1 CAAAATATCTACTAGATAAAAGGTGTTGTATTTAGCATATCGCAATATTTTCAAGCATCAAATAT
*
50490487 CAAGTGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
66 CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
* *
50490552 TTTGGCATGCTCAATTTGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAGTAAC
131 TTTGGCATGCTCAATTCGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAATAAC
* ** * *
50490617 TGCCTTGTAAAATCGTGCTCTATATCAAGAACTTGCTGATGTAAAAACTCAACTATACTAGCCTT
196 TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
*
50490682 AGTCAACAAGGGAAAATGATTGTGTACACTAATATGGACTAAACACCATTGTAAAGCACATATTT
261 AGTCAACAAGGGAAAATGATTGTGTACACTAATATGGACTAAACACAATTGTAAAGCACATATTT
*
50490747 ACACATATGTTCCTATTACCCGAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
326 ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
* *
50490812 ACTGAAACATCAATGAAAACCCAAAATTTAGAAGAAAAAAGAAAATAAATTAGGGCAGATAACAA
391 ACTGAAACATCAATGAAAACCCAAAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
* *
50490877 GATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAATGGAAGC
456 CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGGAAGC
50490942 AGAACTGTCT
521 AGAACTGTCT
50490952 TACCTGAGAC
Statistics
Matches: 504, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
533 504 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (533 bp):
CAAAATATCTACTAGATAAAAGGTGTTGTATTTAGCATATCGCAATATTTTCAAGCATCAAATAT
CAAGCGAAGAGAAAGCAGCAGTTTTAAATATAAGGGTGAAATCCACTACTATTACCTTTACAAAC
TTTGGCATGCTCAATTCGGTCTGACCAAAAAAGAGAAAGAAATAGAAAATTTGAAGTTCAATAAC
TGCCCTACAAAACCGTGCTCTATATCAAGAACTTGCTAATGTAAAAACTCAACTATACTAGCCTT
AGTCAACAAGGGAAAATGATTGTGTACACTAATATGGACTAAACACAATTGTAAAGCACATATTT
ACACATATGTTCCTATTACCCCAATTTTCTAAGCACCCAACCAGCATAAGAACACAATGTACTTA
ACTGAAACATCAATGAAAACCCAAAATTCAGAAGAAAAAAGAAAATAAATTAGAGCAGATAACAA
CATTGAAGAAAAACACAAAAATAAAAACCCAATAAGAAAATTAAAAACAAAGAAAGAAAGGAAGC
AGAACTGTCTGAC
Found at i:50492882 original size:70 final size:72
Alignment explanation
Indices: 50492751--50492905 Score: 226
Period size: 70 Copynumber: 2.2 Consensus size: 72
50492741 AATTTGGGGA
*
50492751 AAAAAGAAAGGGAATTGGGACAAAAGTTAAGGATTTCGGGGAGGGGGGAACTGATTTGGGGAAAA
1 AAAAAGAAAGGGAATTGGGACAAAAATTAAGGATTTCGGGGAGGGGGGAACTGATTTGGGGAAAA
50492816 ATT-GAG
66 ATTAGAG
* * *
50492822 AAAAAGAAAGGGAATTGGGA-AAAAATTAGGGATTTCGGGGA-GGGGGACCTTATTTGGGGGAAA
1 AAAAAGAAAGGGAATTGGGACAAAAATTAAGGATTTCGGGGAGGGGGGAACTGATTT-GGGGAAA
*
50492885 AATTAGGG
65 AATTAGAG
50492893 AAAAACGAAAGGG
1 AAAAA-GAAAGGG
50492906 TTCTAGGAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
69 12 0.16
70 30 0.39
71 27 0.36
72 7 0.09
ACGTcount: A:0.41, C:0.05, G:0.37, T:0.17
Consensus pattern (72 bp):
AAAAAGAAAGGGAATTGGGACAAAAATTAAGGATTTCGGGGAGGGGGGAACTGATTTGGGGAAAA
ATTAGAG
Found at i:50496715 original size:111 final size:111
Alignment explanation
Indices: 50496576--50496787 Score: 388
Period size: 111 Copynumber: 1.9 Consensus size: 111
50496566 TCCTATGTCT
50496576 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCGACGATAACATCTACGGTGTCTCT
1 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCGACGATAACATCTACGGTGTCTCT
*
50496641 ATCCTCACGGCGTCTAGCCGCATAAACCAGTGTAGGCATATGATCA
66 ATCCTCACGGCGTCTAGCCGCATAAACAAGTGTAGGCATATGATCA
* *
50496687 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAATGTACTGACGATAACATCTACGGTGTCTCT
1 ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCGACGATAACATCTACGGTGTCTCT
*
50496752 ATCCTCACGGCGTCTAGTCGCATAAACAAGTGTAGG
66 ATCCTCACGGCGTCTAGCCGCATAAACAAGTGTAGG
50496788 GAGCCTTGTC
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 97 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (111 bp):
ATCAAAGCAAAATAAGGAGCAGTATGAATGAAGAACGTACCGACGATAACATCTACGGTGTCTCT
ATCCTCACGGCGTCTAGCCGCATAAACAAGTGTAGGCATATGATCA
Found at i:50501324 original size:74 final size:74
Alignment explanation
Indices: 50501240--50501387 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
50501230 TTTAAATTCT
50501240 ATAAAGAGAATTAGAGGGTAATACATGTCCCCCATTGGGTTAAAATGTTTTATTGGTAATGCATT
1 ATAAAGAGAATTAGAGGGTAATACATGTCCCCCATTGGGTTAAAATGTTTTATTGGTAATGCATT
50501305 AAGTACTAA
66 AAGTACTAA
50501314 ATAAAGAGAATTAGAGGGTAATACATGTCCCCCATTGGGTTAAAATGTTTTATTGGTAATGCATT
1 ATAAAGAGAATTAGAGGGTAATACATGTCCCCCATTGGGTTAAAATGTTTTATTGGTAATGCATT
50501379 AAGTACTAA
66 AAGTACTAA
50501388 CTTTAAATGA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.32
Consensus pattern (74 bp):
ATAAAGAGAATTAGAGGGTAATACATGTCCCCCATTGGGTTAAAATGTTTTATTGGTAATGCATT
AAGTACTAA
Found at i:50504510 original size:22 final size:22
Alignment explanation
Indices: 50504468--50504557 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 22
50504458 GAAGATGAAA
***
50504468 CTGGAAATTGTTGCAATTTGTT
1 CTGGAAATTGTTTTGATTTGTT
* *
50504490 -TTGATATTGTTATTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
50504512 CTGGAAATTGTTTTGA-TTGTCT
1 CTGGAAATTGTTTTGATTTGT-T
50504534 GCTGGAAATTGTTCTTGATTTGTT
1 -CTGGAAATTGTT-TTGATTTGTT
50504558 AGTCAGTACA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
21 13 0.24
22 12 0.22
23 21 0.38
24 5 0.09
25 4 0.07
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:50509572 original size:91 final size:91
Alignment explanation
Indices: 50509447--50509654 Score: 292
Period size: 91 Copynumber: 2.3 Consensus size: 91
50509437 TTGATTTTAG
* *
50509447 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
50509512 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* * *
50509539 TAAATTCGTATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
50509604 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
50509630 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
50509655 GTTATAATTA
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
91 85 0.83
92 18 0.17
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:50509768 original size:24 final size:25
Alignment explanation
Indices: 50509741--50509796 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
50509731 TTTTATAGTA
*
50509741 TCATATATTATG-ATTTGAGTAAAT
1 TCATATATTAAGAATTTGAGTAAAT
* *
50509765 TCAT-TATTAAGAATTTTATTAAAT
1 TCATATATTAAGAATTTGAGTAAAT
50509789 T-ATATATT
1 TCATATATT
50509797 TTAATTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (25 bp):
TCATATATTAAGAATTTGAGTAAAT
Found at i:50509798 original size:106 final size:106
Alignment explanation
Indices: 50509670--50509874 Score: 333
Period size: 106 Copynumber: 1.9 Consensus size: 106
50509660 AATTATTTTA
* *
50509670 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
50509733 TTATAGTATCATATATTATGATTTGAGTAAATTCATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATTATTAAG
* *
50509776 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
50509841 ACAGTATCATATATTATGATTTGAGTAAATTCAT
66 ACAGTATCATATATTATGATTTGAGTAAATTCAT
50509875 ATAATAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
105 5 0.05
106 85 0.92
107 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (106 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATTATTAAG
Found at i:50509816 original size:15 final size:15
Alignment explanation
Indices: 50509781--50509832 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
50509771 TTAAGAATTT
*
50509781 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50509795 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50509809 TATTTAATAATAAT-
1 TATTTAATTATAATA
50509823 TATGTTAATT
1 TAT-TTAATT
50509833 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50510090 original size:142 final size:144
Alignment explanation
Indices: 50509920--50510186 Score: 493
Period size: 142 Copynumber: 1.9 Consensus size: 144
50509910 ATATATTTTT
*
50509920 ATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATATTAATA
1 ATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATAATAATA
*
50509985 ATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAACAAATTTCTGCTAATTATT
66 ATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAACAAATTTATGCTAATTATT
50510050 AAGAATTTTATTAA
131 AAGAATTTTATTAA
50510064 ATTAT-ATAT-TTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATAATAATA
1 ATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATAATAATA
*
50510127 ATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAACAAATTTATGCTAA
66 ATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAACAAATTTATGCTAA
50510187 GGGTATTCTA
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
142 111 0.93
143 4 0.03
144 5 0.04
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (144 bp):
ATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTATTTATTATTGATAATAATA
ATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAACAAATTTATGCTAATTATT
AAGAATTTTATTAA
Found at i:50510264 original size:39 final size:40
Alignment explanation
Indices: 50510221--50510325 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
50510211 TTCCATTATG
50510221 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
50510260 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
50510305 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
50510326 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:50510319 original size:45 final size:44
Alignment explanation
Indices: 50510219--50510328 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
50510209 TTTTCCATTA
50510219 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
50510258 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
50510303 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
50510329 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:50510328 original size:16 final size:16
Alignment explanation
Indices: 50510309--50510362 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
50510299 GATTTGCTAT
* *
50510309 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
50510325 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50510341 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50510357 TACACC
1 TACACC
50510363 AAACCAAACG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.33, C:0.39, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50511608 original size:22 final size:22
Alignment explanation
Indices: 50511577--50511705 Score: 107
Period size: 22 Copynumber: 5.5 Consensus size: 22
50511567 AAATATGGAT
50511577 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
* *
50511599 TTAAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
* * **
50511621 TTGAGAGGAA-ATTGAAATTAAA
1 TTGAGA-GAATTTTGGAAGGAAA
50511643 TTTGGATTTAAGAGAATTTTGGAAGGAAA
1 -TT-G-----AGAGAATTTTGGAAGGAAA
*
50511672 TTGAGAGAATTTTGGAAAGAAA
1 TTGAGAGAATTTTGGAAGGAAA
50511694 TTGAGAGGAATT
1 TTGAGA-GAATT
50511706 GAGAGGAAAT
Statistics
Matches: 84, Mismatches: 13, Indels: 19
0.72 0.11 0.16
Matches are distributed among these distances:
22 56 0.67
23 10 0.12
24 1 0.01
27 1 0.01
28 5 0.06
29 11 0.13
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:50511619 original size:73 final size:73
Alignment explanation
Indices: 50511541--50511707 Score: 264
Period size: 73 Copynumber: 2.3 Consensus size: 73
50511531 TATTTTAAAA
* *
50511541 AAGGAAATTTAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTGGAAGGAAATTAAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTAAGAGAATTTTGGAAGGAAATTAAGAG
50511606 AATTTTAG
66 AATTTTAG
* * *
50511614 AAGGAAATTGAGAGGAAATTGAAATTAAATTTGGATTTAAGAGAATTTTGGAAGGAAATTGAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTAAGAGAATTTTGGAAGGAAATTAAGAG
*
50511679 AATTTTGG
66 AATTTTAG
*
50511687 AAAGAAATTGAGAGG-AATTGA
1 AAGGAAATTGAGAGGAAATTGA
50511708 GAGGAAATAC
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 6 0.07
73 81 0.93
ACGTcount: A:0.45, C:0.01, G:0.26, T:0.28
Consensus pattern (73 bp):
AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTAAGAGAATTTTGGAAGGAAATTAAGAG
AATTTTAG
Found at i:50512998 original size:28 final size:28
Alignment explanation
Indices: 50512965--50513022 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
50512955 AAAAGGAAAT
*
50512965 AAATTGAAATGATAACACAAGGAACAAG
1 AAATTGAAATGACAACACAAGGAACAAG
50512993 AAATTGAAATGACAACACAAGGAACAAG
1 AAATTGAAATGACAACACAAGGAACAAG
50513021 AA
1 AA
50513023 GCCAAGAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.12
Consensus pattern (28 bp):
AAATTGAAATGACAACACAAGGAACAAG
Found at i:50513553 original size:20 final size:21
Alignment explanation
Indices: 50513528--50513567 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
50513518 TTAGCCTTTT
50513528 TATTTTTATTTTT-ATTTAAA
1 TATTTTTATTTTTAATTTAAA
*
50513548 TATTTTTGTTTTTAATTTAA
1 TATTTTTATTTTTAATTTAA
50513568 TTTTTACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (21 bp):
TATTTTTATTTTTAATTTAAA
Found at i:50525374 original size:22 final size:23
Alignment explanation
Indices: 50525328--50525374 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
50525318 CAGTGTAAAA
*
50525328 AATGATTTATTATTGTTGGAAAT
1 AATGATTTATAATTGTTGGAAAT
*
50525351 AATGATTTGTAATTGTT-GAAAT
1 AATGATTTATAATTGTTGGAAAT
50525373 AA
1 AA
50525375 ATTTGCATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (23 bp):
AATGATTTATAATTGTTGGAAAT
Found at i:50527711 original size:6 final size:7
Alignment explanation
Indices: 50527690--50527714 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50527680 GACAAACCGT
50527690 AAATAAA
1 AAATAAA
50527697 AAATAAA
1 AAATAAA
50527704 AAATAAA
1 AAATAAA
50527711 AAAT
1 AAAT
50527715 GAACTTGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AAATAAA
Done.