Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 168 of 228
Found at i:50530229 original size:45 final size:45
Alignment explanation
Indices: 50530169--50530255 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
50530159 AGAGAGAATA
*
50530169 TTTTTATTCATCTTCTCTTTTAGACTTCGTTATCATCGAAGATAT
1 TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGATAT
50530214 TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGA
1 TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGA
50530256 AACCATGAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.22, C:0.18, G:0.10, T:0.49
Consensus pattern (45 bp):
TTTTTATTCATCTTCTCTGTTAGACTTCGTTATCATCGAAGATAT
Found at i:50539193 original size:101 final size:101
Alignment explanation
Indices: 50539066--50539251 Score: 277
Period size: 101 Copynumber: 1.8 Consensus size: 101
50539056 AAAGTGATGG
* ** *
50539066 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAAT-G-ATGGGTTGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGGAAT-GGTCACATGTGCAGT
*
50539129 ACTATGTGCAGGCTACTATGTATACCGAATAGGTTCAA
64 ACTATGTGCAAGCTACTATGTATACCGAATAGGTTCAA
*
50539167 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGAAATGGTCACATGTGCAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGG-AATGGTCACATGTGCAGTA
50539232 CTATGTGCAAGCTACTATGT
65 CTATGTGCAAGCTACTATGT
50539252 GAATCGGGTA
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
100 2 0.03
101 40 0.53
102 32 0.42
103 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGAATGGTCACATGTGCAGTAC
TATGTGCAAGCTACTATGTATACCGAATAGGTTCAA
Found at i:50539232 original size:51 final size:50
Alignment explanation
Indices: 50539062--50539258 Score: 193
Period size: 51 Copynumber: 3.9 Consensus size: 50
50539052 AGTTAAAGTG
*
50539062 ATGGTCACATGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAAT-G-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGGA
** * * * *
50539111 ATGGGTTGCATGTGTAGTACTATGTGCAGGCTACTATGTATACCGAATAGG-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT-GGA
* ** *
50539162 TTCAATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGAA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGG-A
* * * *
50539214 ATGGTCACATGTGCAGTACTATGTGCAAGCTACTATGTGAATCGG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG
50539259 GTACCATTGA
Statistics
Matches: 117, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
49 4 0.03
50 38 0.32
51 74 0.63
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGA
Found at i:50541418 original size:26 final size:24
Alignment explanation
Indices: 50541370--50541418 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
50541360 ATTAGTTTAT
*
50541370 TAATATTTTAATTTGATTTTTAAA
1 TAATATTTTAATTTGATTATTAAA
*
50541394 TAATATTTTATTATTTTATTATTAA
1 TAATATTTTA--ATTTGATTATTAA
50541419 TTTATTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
26 11 0.52
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TAATATTTTAATTTGATTATTAAA
Found at i:50547288 original size:28 final size:28
Alignment explanation
Indices: 50547225--50547378 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
50547215 ATATTAAGTC
* *
50547225 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
50547252 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50547280 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
50547308 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAAACT
50547336 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50547364 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50547379 GTACAATTTA
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.18
28 100 0.82
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:50557871 original size:9 final size:9
Alignment explanation
Indices: 50557844--50557883 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
50557834 AGTATAAAAC
50557844 TTAACCGAA
1 TTAACCGAA
**
50557853 TTAATAGAA
1 TTAACCGAA
50557862 TTAACCGAA
1 TTAACCGAA
50557871 TTAACCGAA
1 TTAACCGAA
50557880 TTAA
1 TTAA
50557884 AGTATTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (9 bp):
TTAACCGAA
Found at i:50560704 original size:26 final size:26
Alignment explanation
Indices: 50560674--50560734 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
50560664 ATAAGGTTAA
* *
50560674 TTATTTTAAGTT-CTTTATATATTATT
1 TTATTTTAAGTTACTTTACATATTA-C
* *
50560700 TTATTTAAAGTTATTTTACATATTAC
1 TTATTTTAAGTTACTTTACATATTAC
50560726 TTATTTTAA
1 TTATTTTAA
50560735 AATTAACCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (26 bp):
TTATTTTAAGTTACTTTACATATTAC
Found at i:50560733 original size:27 final size:25
Alignment explanation
Indices: 50560673--50560735 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
50560663 CATAAGGTTA
*
50560673 ATTATTTT-AAGTTCTTTATATATT
1 ATTATTTTAAAGTTCTTTACATATT
* *
50560697 ATTTTATTTAAAGTTATTTTACATATT
1 ATTAT-TTTAAAGTT-CTTTACATATT
50560724 ACTTATTTTAAA
1 A-TTATTTTAAA
50560736 ATTAACCTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 5 0.16
27 16 0.52
28 3 0.10
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (25 bp):
ATTATTTTAAAGTTCTTTACATATT
Found at i:50565449 original size:20 final size:20
Alignment explanation
Indices: 50565420--50565464 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50565410 TGTTACTATG
*
50565420 TTTTATTTTTAGACTTTTAC
1 TTTTAGTTTTAGACTTTTAC
* *
50565440 TTTTAGTTTTAGATTTTTAT
1 TTTTAGTTTTAGACTTTTAC
50565460 TTTTA
1 TTTTA
50565465 TTTATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.04, G:0.07, T:0.69
Consensus pattern (20 bp):
TTTTAGTTTTAGACTTTTAC
Found at i:50571258 original size:18 final size:19
Alignment explanation
Indices: 50571235--50571271 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
50571225 TTGCTATTTT
50571235 TATA-TTACAAAATATCTA
1 TATATTTACAAAATATCTA
50571253 TATATTTTACAAAATATCT
1 TATA-TTTACAAAATATCT
50571272 GCTCTCTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
20 13 0.76
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
TATATTTACAAAATATCTA
Found at i:50574999 original size:64 final size:65
Alignment explanation
Indices: 50574833--50575010 Score: 171
Period size: 64 Copynumber: 2.8 Consensus size: 65
50574823 TTCTACACCT
* * * * *
50574833 TATATGCGTAATTTCAAGCCAAAATGAGCCAATGGTTGCACATACAACATGTTTATATGAATTGA
1 TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACGACATGTTTATATAAATTGA
* ** * ** * * * *
50574898 CATATGAATAAATTCGAG-CCAAATGAGCCAATAGTTGCACCTACGACATGTTTCTGTAAATTGA
1 TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACGACATGTTTATATAAATTGA
* * * *
50574962 TATATGCGTAATTTTAGGACAAAATGAGCCAA-CGTTGCACTTATGACAT
1 TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACGACAT
50575011 CAACACGAAA
Statistics
Matches: 89, Mismatches: 23, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
64 64 0.72
65 25 0.28
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (65 bp):
TATATGCGTAATTTTAAGACAAAATGAGCCAATAGTTGCACATACGACATGTTTATATAAATTGA
Found at i:50580105 original size:31 final size:32
Alignment explanation
Indices: 50580070--50580143 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 32
50580060 TAAGGGTTAA
*
50580070 TTTCAATTTTTG-AATATTATTTAATATTTAT
1 TTTCAATTTTTGTAATATTAATTAATATTTAT
* * *
50580101 TTTC-ATTTATGTAATTTTAATTAATTTTTAT
1 TTTCAATTTTTGTAATATTAATTAATATTTAT
*
50580132 TTTATAATTTTT
1 TTT-CAATTTTT
50580144 TATAATAGTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
30 6 0.18
31 23 0.68
33 5 0.15
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (32 bp):
TTTCAATTTTTGTAATATTAATTAATATTTAT
Found at i:50591553 original size:43 final size:38
Alignment explanation
Indices: 50591463--50591607 Score: 125
Period size: 41 Copynumber: 3.6 Consensus size: 38
50591453 GTGATCTCTT
** *
50591463 ACTGTAACTTCAGAGAGATAAGATCTTTATTTAATC-CGTCC
1 ACTGTAACTTCAG-GAGAT-AGATC-TGCTTCAATCTC-TCC
50591504 ACTGTAACTTCAGAGAGATAGATTACTAGCTTCAATCTACTCC
1 ACTGTAACTTCAG-GAGATAGA-T-CT-GCTTCAATCT-CTCC
* *
50591547 GCTGTAA-TCTCAGGAGATAGATCTGCTTCAATCTGTCC
1 ACTGTAACT-TCAGGAGATAGATCTGCTTCAATCTCTCC
50591585 ACTGTAAC-TCAGGAGATAAGATC
1 ACTGTAACTTCAGGAGAT-AGATC
50591608 GAATTCTCGG
Statistics
Matches: 90, Mismatches: 6, Indels: 19
0.78 0.05 0.17
Matches are distributed among these distances:
37 9 0.10
38 14 0.16
39 10 0.11
40 5 0.06
41 22 0.24
42 16 0.18
43 13 0.14
44 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (38 bp):
ACTGTAACTTCAGGAGATAGATCTGCTTCAATCTCTCC
Found at i:50591920 original size:40 final size:41
Alignment explanation
Indices: 50591859--50591968 Score: 125
Period size: 41 Copynumber: 2.7 Consensus size: 41
50591849 TCTTTATTCC
* * * *
50591859 GCTCCACTGTAACTTCAGGAGATAGGAT-AGAGTCTTCGATCT
1 GCTCC-CTGTAAC-TCAGGAGATAAGATCACAGGCTTCAATCT
* *
50591901 -CTCCCTGTAATCTCAGGAGATAAGATCTCTGGCTTCAATCT
1 GCTCCCTGTAA-CTCAGGAGATAAGATCACAGGCTTCAATCT
50591942 GCTCCCTGTAACTCAGGAGATAAGATC
1 GCTCCCTGTAACTCAGGAGATAAGATC
50591969 TGAATCTCGG
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
40 19 0.32
41 30 0.51
42 10 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (41 bp):
GCTCCCTGTAACTCAGGAGATAAGATCACAGGCTTCAATCT
Found at i:50591962 original size:41 final size:41
Alignment explanation
Indices: 50591892--50591969 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
50591882 AGGATAGAGT
*
50591892 CTTCGATCTCTCCCTGTAATCTCAGGAGATAAGATCTCTGG
1 CTTCAATCTCTCCCTGTAATCTCAGGAGATAAGATCTCTGG
50591933 CTTCAATCTGCTCCCTGTAA-CTCAGGAGATAAGATCT
1 CTTCAATCT-CTCCCTGTAATCTCAGGAGATAAGATCT
50591970 GAATCTCGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
41 25 0.71
42 10 0.29
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (41 bp):
CTTCAATCTCTCCCTGTAATCTCAGGAGATAAGATCTCTGG
Found at i:50592005 original size:81 final size:83
Alignment explanation
Indices: 50591859--50592009 Score: 193
Period size: 81 Copynumber: 1.8 Consensus size: 83
50591849 TCTTTATTCC
* * * * *
50591859 GCTCCACTGTAACTTCAGGAGATAGGATAGAGTCTTCGATCTCTCCCTGTAATCTCAGGAGATAA
1 GCTCCACTGTAACTTCAGGAGATAAGATAGAATCTTCGATCTCTCACTGTAACCTCAGGAAATAA
50591924 GATCTCTGGCTTCAATCT
66 GATCTCTGGCTTCAATCT
* *
50591942 GCTCC-CTGTAAC-TCAGGAGATAAGATCTGAATC-TCGGTCTC-CACTGTAACCTCAGGGAAAT
1 GCTCCACTGTAACTTCAGGAGATAAGAT-AGAATCTTCGATCTCTCACTGTAACCTCA-GGAAAT
50592003 AAGATCT
64 AAGATCT
50592010 GATTGATCTT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 11 0.19
81 32 0.54
82 11 0.19
83 5 0.08
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (83 bp):
GCTCCACTGTAACTTCAGGAGATAAGATAGAATCTTCGATCTCTCACTGTAACCTCAGGAAATAA
GATCTCTGGCTTCAATCT
Found at i:50604786 original size:23 final size:23
Alignment explanation
Indices: 50604767--50604820 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
50604757 TGTATACACG
50604767 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* *
50604790 TACATAATAATAATA-ATAGTAA
1 TACATAATAAAAATATATACTAA
50604812 TAC-TAATAA
1 TACATAATAA
50604821 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:50604801 original size:3 final size:3
Alignment explanation
Indices: 50604770--50604839 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
50604760 ATACACGTAC
* * * *
50604770 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
50604817 ATA ATA CTA ATA AT- ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
50604840 CAAGGATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.81
4 6 0.11
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:50605320 original size:13 final size:12
Alignment explanation
Indices: 50605302--50605339 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
50605292 AAGAAAAAAA
50605302 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
50605315 GAAGAGAGAAGG
1 GAAGAGAGAAGG
50605327 G-AGAGAGAAGG
1 GAAGAGAGAAGG
50605338 GA
1 GA
50605340 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:50605827 original size:8 final size:8
Alignment explanation
Indices: 50605814--50605838 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50605804 GGTGTTCGGC
50605814 GCAAGTGG
1 GCAAGTGG
50605822 GCAAGTGG
1 GCAAGTGG
50605830 GCAAGTGG
1 GCAAGTGG
50605838 G
1 G
50605839 GGTAGGTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:50607888 original size:19 final size:19
Alignment explanation
Indices: 50607815--50607885 Score: 106
Period size: 19 Copynumber: 3.6 Consensus size: 19
50607805 ATCTTCAACA
*
50607815 ATATGCAATTTTAGATATG
1 ATATGCAATCTTAGATATG
50607834 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
*
50607853 ATATATGCAATCTTGGATATG
1 --ATATGCAATCTTAGATATG
50607874 ATATGCAATCTT
1 ATATGCAATCTT
50607886 GGAAGATATG
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 30 0.62
21 18 0.38
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:50608093 original size:47 final size:47
Alignment explanation
Indices: 50608020--50608111 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
50608010 TCATTGTTTG
50608020 AAAAAAAAATCAATAAAAAAAGGGGAGAAAGATTCACAGTTTTTTTT
1 AAAAAAAAATCAATAAAAAAAGGGGAGAAAGATTCACAGTTTTTTTT
* * * **
50608067 AAAAAAAAATTAATAAAAAAATGGGAGAACGATTGGCAGTTTTTT
1 AAAAAAAAATCAATAAAAAAAGGGGAGAAAGATTCACAGTTTTTT
50608112 AAAGGTGGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.26
Consensus pattern (47 bp):
AAAAAAAAATCAATAAAAAAAGGGGAGAAAGATTCACAGTTTTTTTT
Found at i:50613605 original size:11 final size:11
Alignment explanation
Indices: 50613591--50613616 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50613581 AAAATATTTC
50613591 AAAAAAAAAGA
1 AAAAAAAAAGA
50613602 AAAAAAAAAGA
1 AAAAAAAAAGA
50613613 AAAA
1 AAAA
50613617 GCAAAAGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:50614989 original size:88 final size:88
Alignment explanation
Indices: 50614827--50615517 Score: 1006
Period size: 88 Copynumber: 7.9 Consensus size: 88
50614817 AGCAGATCAG
* * * * * *
50614827 TGAAGATAACAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGGTCGAAGACACCAACCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
* * *
50614892 CCTTGGGTTGTAGCGGAGCAAGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * * *
50614915 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
*
50614980 CCCTAGGTTGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
** * * *
50615003 TGAAGATAGCAGATCTTGTTTTCCTGCATCAACAGCGAAGCAGATCGAAGATACCAGCCTTCCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
50615068 CCCTGGGTTGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
*
50615091 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
*
50615156 CCCTGGGTTGTAGTGGGGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * * ** *
50615179 TGAAGATAGCAGATATTGACTTCTTATACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
*
50615244 CCCTGGGTCGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * * * * *
50615267 TGAAGATAGCAGATCTTGCCTTCTTGTACCGAGAGTGAAGTAGATCGAAGATACCAGCCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
* *
50615332 CCCTGGGTCGTAGTGGAGTAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* *
50615355 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
50615420 CCCT-GGTTGTAGTGGAGCAGGT
66 CCCTGGGTTGTAGTGGAGCAGGT
* * *
50615442 TGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAACCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
50615507 CCCTGGGTTGT
66 CCCTGGGTTGT
50615518 CGTGAAGTAG
Statistics
Matches: 552, Mismatches: 50, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
87 84 0.15
88 468 0.85
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (88 bp):
TGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
CCCTGGGTTGTAGTGGAGCAGGT
Found at i:50615567 original size:44 final size:44
Alignment explanation
Indices: 50615518--50615773 Score: 264
Period size: 44 Copynumber: 5.8 Consensus size: 44
50615508 CCTGGGTTGT
*
50615518 CGTGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
** *
50615562 CGTGAAGTAGATTAAAGATAA-CAGATCTTGTCTTCATATATTGG
1 CGTGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTATTGG
* * *** *
50615606 CGTGAAGTAGATTGAATATAA-CAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTATTGG
* *
50615650 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
1 -CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
* * * * *
50615695 CGTGAACTAGATCAAAGATAGCAGATCTTATCTTCATGTATCGG
1 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
* * * ** *
50615739 CATGAAATAGATCAAAGGTAGCAAATCTTGTCTTC
1 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
50615774 CCATACTGGT
Statistics
Matches: 180, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
44 145 0.81
45 35 0.19
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
Found at i:50615688 original size:133 final size:133
Alignment explanation
Indices: 50615521--50615801 Score: 427
Period size: 133 Copynumber: 2.1 Consensus size: 133
50615511 GGGTTGTCGT
* * *
50615521 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTAAAGATAACAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAACTAGATCAAAGATAACAG
* * * * ** * *
50615586 ATCTTGTCTTCATATATTGGCGTGAAGTAGATTGAATATAACAGATCTTGTCTTCCCATACTGGT
66 ATCTTATCTTCATATATCGGCATGAAATAGATCAAAGATAACAAATCTTGTCTTCCCATACTGGT
50615651 GGC
131 GGC
*
50615654 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAACTAGATCAAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAACTAGATCAAAGATAACAG
* * *
50615719 ATCTTATCTTCATGTATCGGCATGAAATAGATCAAAGGTAGCAAATCTTGTCTTCCCATACTGGT
66 ATCTTATCTTCATATATCGGCATGAAATAGATCAAAGATAACAAATCTTGTCTTCCCATACTGGT
50615784 GGC
131 GGC
50615787 GAAGTAGATCGAAGA
1 GAAGTAGATCGAAGA
50615802 TACAAGTCTT
Statistics
Matches: 133, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 133 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (133 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAACTAGATCAAAGATAACAG
ATCTTATCTTCATATATCGGCATGAAATAGATCAAAGATAACAAATCTTGTCTTCCCATACTGGT
GGC
Found at i:50615693 original size:89 final size:89
Alignment explanation
Indices: 50615565--50615729 Score: 233
Period size: 89 Copynumber: 1.9 Consensus size: 89
50615555 GTATTGGCGT
* * ** *
50615565 GAAGTAGATTAAAGATAACAGATCTTGTCTTCATATATTGGCGTGAAGTAGATTGAATATAACAG
1 GAAGTAGATCAAAGATAACAGATCTTGTCTTCATATATTGGCGTGAACTAGATCAAAGATAACAG
*
50615630 ATCTTGTCTTCCCATACTGGTGGC
66 ATCTTATCTTCCCATACTGGTGGC
* * *
50615654 GAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTATTGGCGTGAACTAGATCAAAGATAGCA
1 GAAGTAGATCAAAGATAA-CAGATCTTGTCTTCATATATTGGCGTGAACTAGATCAAAGATAACA
50615718 GATCTTATCTTC
65 GATCTTATCTTC
50615730 ATGTATCGGC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
88 2 0.03
89 64 0.97
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (89 bp):
GAAGTAGATCAAAGATAACAGATCTTGTCTTCATATATTGGCGTGAACTAGATCAAAGATAACAG
ATCTTATCTTCCCATACTGGTGGC
Found at i:50615839 original size:133 final size:133
Alignment explanation
Indices: 50615521--50615839 Score: 356
Period size: 133 Copynumber: 2.4 Consensus size: 133
50615511 GGGTTGTCGT
* * * * * *
50615521 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTAAAGATAACAG
1 GAAGTAGATCGAAGAAAGCAGATCTTATCTCCATGAATTGACGTGAAGTAGATCAAAGATAACAG
* * * * ** * *
50615586 ATCTTGTCTTCATATATTGGCGTGAAGTAGATTGAATATAACAGATCTTGTCTTCCCATACTGGT
66 ATCTTATCTTCATATATCGGCATGAAATAGATCAAAGATAACAAATCTTGTCTTCCCATACTGGT
50615651 GGC
131 GGC
* * * * * *
50615654 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAACTAGATCAAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTATCTCCATGAATTGACGTGAAGTAGATCAAAGATAACAG
* * *
50615719 ATCTTATCTTCATGTATCGGCATGAAATAGATCAAAGGTAGCAAATCTTGTCTTCCCATACTGGT
66 ATCTTATCTTCATATATCGGCATGAAATAGATCAAAGATAACAAATCTTGTCTTCCCATACTGGT
50615784 GGC
131 GGC
* * *
50615787 GAAGTAGATCGAAGATA-CA-AGTCTTATCTCCCTGAAGTT-ACAGTGGAGTAGAT
1 GAAGTAGATCGAAGAAAGCAGA-TCTTATCTCCATGAA-TTGAC-GTGAAGTAGAT
50615840 TGAAGCACTA
Statistics
Matches: 160, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
131 1 0.01
132 14 0.09
133 145 0.91
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (133 bp):
GAAGTAGATCGAAGAAAGCAGATCTTATCTCCATGAATTGACGTGAAGTAGATCAAAGATAACAG
ATCTTATCTTCATATATCGGCATGAAATAGATCAAAGATAACAAATCTTGTCTTCCCATACTGGT
GGC
Found at i:50616202 original size:19 final size:21
Alignment explanation
Indices: 50616146--50616220 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 21
50616136 TTCAAGGATG
50616146 TGCAATCTTAGATATG--ATA
1 TGCAATCTTAGATATGATATA
50616165 TGCAATCTTAGATATGATATA
1 TGCAATCTTAGATATGATATA
*
50616186 TGCAATCTTGGAAGATATGAT-TT
1 TGCAATCTT---AGATATGATATA
*
50616209 TGTAATCTTAGA
1 TGCAATCTTAGA
50616221 GATTTAATTT
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
19 16 0.33
20 3 0.06
21 12 0.24
23 9 0.18
24 9 0.18
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (21 bp):
TGCAATCTTAGATATGATATA
Found at i:50624148 original size:25 final size:25
Alignment explanation
Indices: 50624093--50624158 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
50624083 GTCACCGATT
**
50624093 TTAGCTCTTATGAGCTTCCCGATAC
1 TTAGCTCACATGAGCTTCCCGATAC
* *
50624118 TTAGCTCACATGAGCTTCCTGTTA-
1 TTAGCTCACATGAGCTTCCCGATAC
*
50624142 TTCAGCTCGCATGAGCT
1 TT-AGCTCACATGAGCT
50624159 CCTCATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 2 0.06
25 33 0.94
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (25 bp):
TTAGCTCACATGAGCTTCCCGATAC
Found at i:50624167 original size:25 final size:25
Alignment explanation
Indices: 50624120--50624170 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
50624110 CCCGATACTT
*
50624120 AGCTCACATGAGCTTCCTGTTATTC
1 AGCTCACATGAGCTTCCTATTATTC
*
50624145 AGCTCGCATGAGC-TCCTCATTATTC
1 AGCTCACATGAGCTTCCT-ATTATTC
50624170 A
1 A
50624171 AATCAGAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (25 bp):
AGCTCACATGAGCTTCCTATTATTC
Found at i:50630723 original size:34 final size:34
Alignment explanation
Indices: 50630679--50630746 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
50630669 GCACAGTTGA
* *
50630679 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
*
50630714 ACAGT-TTGGGCCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
50630747 TCAAAAGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:50634315 original size:25 final size:25
Alignment explanation
Indices: 50634287--50634394 Score: 103
Period size: 25 Copynumber: 4.3 Consensus size: 25
50634277 TTTAGCTCTT
*
50634287 ATGAGCTTTCCGATACTCAGCTCGC
1 ATGAGCTTTCCGATATTCAGCTCGC
* *
50634312 ATGAG-TTTCCCGTTATTAAGCTCGC
1 ATGAGCTTT-CCGATATTCAGCTCGC
* *
50634337 ATGAGCTTTCC-ATTATTTAGGTCGC
1 ATGAGCTTTCCGA-TATTCAGCTCGC
* * *
50634362 ATGAGCTTCCCGTTATTCAGCTCGG
1 ATGAGCTTTCCGATATTCAGCTCGC
*
50634387 AGGAGCTT
1 ATGAGCTT
50634395 ATCGTTTACA
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
24 3 0.04
25 61 0.91
26 3 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.33
Consensus pattern (25 bp):
ATGAGCTTTCCGATATTCAGCTCGC
Found at i:50644233 original size:9 final size:9
Alignment explanation
Indices: 50644219--50644303 Score: 107
Period size: 9 Copynumber: 9.4 Consensus size: 9
50644209 TTTGGTTAAA
50644219 AATTAACCG
1 AATTAACCG
**
50644228 AATTAACTA
1 AATTAACCG
50644237 AATTAACCG
1 AATTAACCG
*
50644246 AATTAACCA
1 AATTAACCG
*
50644255 AATTAACCA
1 AATTAACCG
50644264 AATTAACCG
1 AATTAACCG
50644273 AATTAACCG
1 AATTAACCG
* *
50644282 AATTAATCA
1 AATTAACCG
*
50644291 AATTACCCG
1 AATTAACCG
50644300 AATT
1 AATT
50644304 GAATCACTGC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 65 1.00
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:50644241 original size:18 final size:18
Alignment explanation
Indices: 50644218--50644303 Score: 127
Period size: 18 Copynumber: 4.8 Consensus size: 18
50644208 TTTTGGTTAA
*
50644218 AAATTAACCGAATTAACT
1 AAATTAACCGAATTAACC
50644236 AAATTAACCGAATTAACC
1 AAATTAACCGAATTAACC
*
50644254 AAATTAACCAAATTAACC
1 AAATTAACCGAATTAACC
* *
50644272 GAATTAACCGAATTAATC
1 AAATTAACCGAATTAACC
*
50644290 AAATTACCCGAATT
1 AAATTAACCGAATT
50644304 GAATCACTGC
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:50644250 original size:27 final size:27
Alignment explanation
Indices: 50644219--50644303 Score: 127
Period size: 27 Copynumber: 3.1 Consensus size: 27
50644209 TTTGGTTAAA
50644219 AATTAACCGAATTAACTAAATTAACCG
1 AATTAACCGAATTAACTAAATTAACCG
* *
50644246 AATTAACCAAATTAACCAAATTAACCG
1 AATTAACCGAATTAACTAAATTAACCG
*
50644273 AATTAACCGAATTAA-TCAAATTACCCG
1 AATTAACCGAATTAACT-AAATTAACCG
50644300 AATT
1 AATT
50644304 GAATCACTGC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.26
Consensus pattern (27 bp):
AATTAACCGAATTAACTAAATTAACCG
Found at i:50644354 original size:37 final size:37
Alignment explanation
Indices: 50644302--50644376 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
50644292 ATTACCCGAA
* *
50644302 TTGAATCACTGCATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
50644339 TTGAATCACTACATAATTAAAAACATTACATAATTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
50644376 T
1 T
50644377 GAAATTAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:50644547 original size:38 final size:39
Alignment explanation
Indices: 50644503--50644619 Score: 191
Period size: 39 Copynumber: 3.0 Consensus size: 39
50644493 ACTTAAGAGT
* *
50644503 TAGACTTTGGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
*
50644541 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGA
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
*
50644580 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
50644619 T
1 T
50644620 TGGGTTGGTA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
38 26 0.36
39 47 0.64
ACGTcount: A:0.19, C:0.03, G:0.28, T:0.50
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTAGGTAATTGGG
Found at i:50644618 original size:13 final size:13
Alignment explanation
Indices: 50644600--50644654 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
50644590 TTTTAGTTTT
50644600 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
50644613 ATTGGGTTGGGTTGGTA
1 ATTGGGTT--G--GGTA
* *
50644630 AATAGGTTGGGTA
1 ATTGGGTTGGGTA
50644643 ATTGGGTTGGGT
1 ATTGGGTTGGGT
50644655 TGGGTTGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 22 0.65
15 2 0.06
17 10 0.29
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.38
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:50647017 original size:125 final size:125
Alignment explanation
Indices: 50646817--50647154 Score: 532
Period size: 125 Copynumber: 2.7 Consensus size: 125
50646807 TGTCTCCGGT
* * * * * *
50646817 CAAATACTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTGAAATCCCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCACCCTCG
* * * * *
50646882 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTCTGATTTTTTTGAG
66 TGGACGCGATTTTGCTATAGTAGGTAATGTAAGAAATAATATTTTTCTGATGTTTCTGAG
* * *
50646942 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGAAACCTCA
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCACCCTCG
*
50647007 TGGATGCGATTTTGCTATAGTAGGTAATGTAAGAAATAATATTTTTCTGATGTTTCTGAG
66 TGGACGCGATTTTGCTATAGTAGGTAATGTAAGAAATAATATTTTTCTGATGTTTCTGAG
*
50647067 CAAATAGTATAAAATCGTTTCTACGATGATGCTATTTGAGAAGAAATTGTGAAATCGCACCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCACCCTCG
50647132 TGGACGCGATTTTGCTATAGTAG
66 TGGACGCGATTTTGCTATAGTAG
50647155 CAAGTTTGGG
Statistics
Matches: 193, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
125 193 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (125 bp):
CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCACCCTCG
TGGACGCGATTTTGCTATAGTAGGTAATGTAAGAAATAATATTTTTCTGATGTTTCTGAG
Found at i:50648873 original size:56 final size:55
Alignment explanation
Indices: 50648736--50648874 Score: 149
Period size: 56 Copynumber: 2.5 Consensus size: 55
50648726 GATCTAACAT
* *
50648736 TATGTAAAATTATTAAGCCAAAAAAATTTTCTTAATGGTTAGTAAAATTTATCAAA
1 TATGT-AAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATCAAA
* * * *
50648792 TAATCTCAAATTATTAAGTCC--AAAAATTGTGTTAATGGTTATTAAAGTGT-TCAAAA
1 T-ATGT-AAATTATTAAG-CCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATC-AAA
50648848 TATGTAAATTTATTAAGCCAAAAAAAT
1 TATGTAAA-TTATTAAGCCAAAAAAAT
50648875 ATGTAAAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
54 5 0.07
55 13 0.19
56 35 0.51
57 14 0.20
58 2 0.03
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (55 bp):
TATGTAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATCAAA
Found at i:50648876 original size:26 final size:26
Alignment explanation
Indices: 50648844--50648900 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
50648834 TAAAGTGTTC
*
50648844 AAAATATGTAAATTTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
50648870 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
50648896 AAAAT
1 AAAAT
50648901 TTAGGTTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (26 bp):
AAAATATGTAAAATTATTAAGCCAAA
Found at i:50648949 original size:28 final size:28
Alignment explanation
Indices: 50648898--50649709 Score: 1165
Period size: 28 Copynumber: 28.4 Consensus size: 28
50648888 AAGCCAAAAA
*
50648898 AATTTAGGTTAGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50648926 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
50648955 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50648983 AATTTAGGTTAGAGTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50649011 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
50649040 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649068 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
50649097 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50649125 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
50649154 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649182 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
50649211 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50649239 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
50649268 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649296 AATTTAGGTTAGATTAGGGTTTTTATTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* * *
50649324 AATTTAAGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
50649353 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649381 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
50649409 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649437 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50649465 TATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
50649494 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* * *
50649522 AATTTAAGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
50649551 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649579 AATTTAGGTTAAATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
50649607 AATTTAGGTTAGGGTTAGGTTAGGATTTTCAATT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
* * *
50649641 AAATTAGGTTAGGTTTGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
50649669 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
50649698 AATTTAGGTTAG
1 AATTTAGGTTAG
50649710 GGTTAGGTTA
Statistics
Matches: 716, Mismatches: 52, Indels: 32
0.89 0.06 0.04
Matches are distributed among these distances:
28 428 0.60
29 263 0.37
32 2 0.00
34 23 0.03
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.50
Consensus pattern (28 bp):
AATTTAGGTTAGATTAGGGTTTTTAATT
Found at i:50649041 original size:85 final size:85
Alignment explanation
Indices: 50648898--50649716 Score: 1132
Period size: 85 Copynumber: 9.6 Consensus size: 85
50648888 AAGCCAAAAA
**
50648898 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
1 AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
*
50648963 TTAGATTAGGGTTTTTAGTT
66 TTAGATTAGGGTTTTTAATT
*
50648983 AATTTAGGTTAGAGTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
1 AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
50649048 TTAGATTAGGGTTTTTAATT
66 TTAGATTAGGGTTTTTAATT
*
50649068 AATTTAGGTTAG-GTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTTAATTTA
1 AATTTAGGTTAGAG--TAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTA
* *
50649131 GGTTAGGTTTAGGGTTTTTAGTT
64 GGTTA-GATTAGGGTTTTTAATT
* *
50649154 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGG
1 AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
*
50649219 TTAGATTAGGGTTTTTAGTT
66 TTAGATTAGGGTTTTTAATT
* * *
50649239 AATTTAGGTTAG-GTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATTAATTTA
1 AATTTAGGTTAGAG--TAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTA
*
50649302 GGTTAGATTAGGGTTTTTATTT
64 GGTTAGATTAGGGTTTTTAATT
* * * *
50649324 AATTTAAGTTAG-GTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATTAATTTA
1 AATTTAGGTTAGAG--TAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTA
*
50649387 GGTTAGATTAGGGTTTTTAGTT
64 GGTTAGATTAGGGTTTTTAATT
* * *
50649409 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTTTATTTAGG
1 AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
*
50649473 TTAGGTTTAGGGTTTTTAATT
66 TTA-GATTAGGGTTTTTAATT
* * *
50649494 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAAGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
1 AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
50649559 TTAGATTAGGGTTTTTAATT
66 TTAGATTAGGGTTTTTAATT
* * * * * *
50649579 AATTTAGGTTAAATTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGTTAGGATTTTCAATTAAA
1 AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTA-GG-T---TTAGGGTTTTTAGTTAAT
* *
50649644 TTAGGTTAGGTTTGGGTTTTTAATT
61 TTAGGTTAGATTAGGGTTTTTAATT
*
50649669 AATTTAGGTTAG-GTTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGAG--TAGGGTTTTTAATTAATTTAGGTTAGGTTTAGG
50649717 TTAGGGTTTT
Statistics
Matches: 675, Mismatches: 42, Indels: 33
0.90 0.06 0.04
Matches are distributed among these distances:
84 51 0.08
85 414 0.61
86 134 0.20
87 1 0.00
90 50 0.07
91 25 0.04
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.50
Consensus pattern (85 bp):
AATTTAGGTTAGAGTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGG
TTAGATTAGGGTTTTTAATT
Found at i:50649710 original size:57 final size:57
Alignment explanation
Indices: 50648898--50649716 Score: 1247
Period size: 57 Copynumber: 14.3 Consensus size: 57
50648888 AAGCCAAAAA
*
50648898 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
* * *
50648955 AATTTAGGTTA-GATTAGGGTTTTTAGTTAATTTAGGTTAGAGTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* *
50649011 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
50649068 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* *
50649125 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
50649182 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* *
50649239 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* * * *
50649296 AATTTAGGTTA-GATTAGGGTTTTTATTTAATTTAAGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
*
50649353 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
*
50649409 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
*
50649465 TATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* * *
50649522 AATTTAAGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
** * * *
50649579 AATTTAGGTTA-AATTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGTTAGGATTTTCAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA--G--A--TTAGGGTTTTTAGTT
* * *
50649641 AAATTAGGTTAGGTTT-GGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
*
50649698 AATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGGTTTAGG
50649717 TTAGGGTTTT
Statistics
Matches: 708, Mismatches: 43, Indels: 21
0.92 0.06 0.03
Matches are distributed among these distances:
56 158 0.22
57 496 0.70
58 3 0.00
60 1 0.00
61 2 0.00
62 46 0.06
63 2 0.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.50
Consensus pattern (57 bp):
AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
Found at i:50649963 original size:24 final size:24
Alignment explanation
Indices: 50649932--50649987 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
50649922 GACGGCGGTT
50649932 GTTCTTCCTCCGGTGGTGATTGTG
1 GTTCTTCCTCCGGTGGTGATTGTG
*
50649956 GTTCTTCCTCCGGTGGTGGTTGTG
1 GTTCTTCCTCCGGTGGTGATTGTG
50649980 GTTCTTCC
1 GTTCTTCC
50649988 GGTTCGGCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.02, C:0.23, G:0.32, T:0.43
Consensus pattern (24 bp):
GTTCTTCCTCCGGTGGTGATTGTG
Found at i:50650286 original size:18 final size:18
Alignment explanation
Indices: 50650242--50650287 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
50650232 TATTCGAAAA
* *
50650242 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
50650260 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
50650278 AGGAAACATA
1 AGGATACATA
50650288 CCTGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:50652067 original size:30 final size:30
Alignment explanation
Indices: 50652014--50652076 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 30
50652004 GCCATTAATG
50652014 AAAATATAAAAAAATTTAAAATTATTTTTAA
1 AAAATATAAAAAAATTTAAAATTA-TTTTAA
*
50652045 AAAATATAAAAAAA-TTATAATTATTTTAA
1 AAAATATAAAAAAATTTAAAATTATTTTAA
50652074 AAA
1 AAA
50652077 TGAATTTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 9 0.29
30 8 0.26
31 14 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (30 bp):
AAAATATAAAAAAATTTAAAATTATTTTAA
Found at i:50652113 original size:22 final size:22
Alignment explanation
Indices: 50652085--50652132 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
50652075 AATGAATTTT
50652085 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
50652107 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
50652129 AGAG
1 AGAG
50652133 GATTAGAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (22 bp):
AGAGAATTTTGGAAGGAAATTG
Found at i:50653980 original size:3 final size:3
Alignment explanation
Indices: 50653967--50653998 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
50653957 TAAGATAAAC
*
50653967 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
50653999 ATAACGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:50654235 original size:16 final size:16
Alignment explanation
Indices: 50654182--50654226 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
50654172 TAATTGATTT
50654182 TTTTTCAATTTATTCAA
1 TTTTTC-ATTTATTCAA
*
50654199 TTTTTTAGTTTATTCAA
1 TTTTTCA-TTTATTCAA
50654216 TTTTTCATTTA
1 TTTTTCATTTA
50654227 ATCTATTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.64
Consensus pattern (16 bp):
TTTTTCATTTATTCAA
Found at i:50655488 original size:20 final size:20
Alignment explanation
Indices: 50655459--50655502 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50655449 GTGTACTTCT
*
50655459 TTTTTTTAATTTTT-ATGAA
1 TTTTTATAATTTTTAATGAA
50655478 CTTTTTATAATTTTTAATGAA
1 -TTTTTATAATTTTTAATGAA
50655499 TTTT
1 TTTT
50655503 GATTTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTTTATAATTTTTAATGAA
Found at i:50655521 original size:19 final size:20
Alignment explanation
Indices: 50655499--50655538 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
50655489 TTTTAATGAA
*
50655499 TTTTGATTTTTTAAA-TATT
1 TTTTGAATTTTTAAATTATT
50655518 TTTTGAATTTTTAAATTATT
1 TTTTGAATTTTTAAATTATT
50655538 T
1 T
50655539 GATGATATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTGAATTTTTAAATTATT
Found at i:50658475 original size:20 final size:19
Alignment explanation
Indices: 50658449--50658497 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 19
50658439 AGCAATGAAT
50658449 CTGTTCACCAAGAGATACAA
1 CTGTTCA-CAAGAGATACAA
*
50658469 TTGTTCA-AA-AGATACAA
1 CTGTTCACAAGAGATACAA
50658486 CTGTTCATCAAG
1 CTGTTCA-CAAG
50658498 TGAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 14 0.58
18 2 0.08
19 2 0.08
20 6 0.25
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (19 bp):
CTGTTCACAAGAGATACAA
Found at i:50664164 original size:42 final size:42
Alignment explanation
Indices: 50664108--50664251 Score: 209
Period size: 42 Copynumber: 3.4 Consensus size: 42
50664098 ACTGGGATGT
* ** *
50664108 GATTACGTGTAAGACCATGTATGGGACATTGTTATCG-TCATGT
1 GATT-CGTGTAAGACCATGTCTGGGACATTGGCATCGAT-ATGA
*
50664151 GATTCGTGTAAGACAATGTCTGGGACATTGGCATCGATATGA
1 GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
*
50664193 GATTCGAGTAAGACCATGTCTGGGACATTGGCATCGATATGA
1 GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
50664235 GATTCGTGTAAGACCAT
1 GATTCGTGTAAGACCAT
50664252 AGCTAACTAT
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
42 87 0.95
43 5 0.05
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (42 bp):
GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
Found at i:50664288 original size:84 final size:84
Alignment explanation
Indices: 50664115--50664289 Score: 182
Period size: 84 Copynumber: 2.1 Consensus size: 84
50664105 TGTGATTACG
** * *
50664115 TGTAAGACCATGTATGGGACATTGTTATCGTCATGTGATTCGTGTAAGACAATGTCTGGGACATT
1 TGTAAGACCATGTATGGGACATTGGCATCGTCATGAGATTCGTGTAAGACAATGTCT-GAACATT
* *
50664180 GGCATCGATATGAGATTCGA
65 AGCATCGATATGAGATGCGA
* *
50664200 -GTAAGACCATGTCTGGGACATTGGCATCGAT-ATGAGATTCGTGTAAGACCATAG-CT-AACTA
1 TGTAAGACCATGTATGGGACATTGGCATCG-TCATGAGATTCGTGTAAGACAAT-GTCTGAAC-A
50664261 TTAGCATCGATAT-ATGATAGC-A
63 TTAGCATCGATATGA-GAT-GCGA
50664283 TGTAAGA
1 TGTAAGA
50664290 TCATATCTAG
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
82 3 0.04
83 17 0.22
84 54 0.71
85 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (84 bp):
TGTAAGACCATGTATGGGACATTGGCATCGTCATGAGATTCGTGTAAGACAATGTCTGAACATTA
GCATCGATATGAGATGCGA
Found at i:50665352 original size:25 final size:25
Alignment explanation
Indices: 50665324--50665375 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
50665314 ATACTTTGGT
50665324 ATGACTTGGTTTGG-T-TTTAGATTGA
1 ATGACTTGG-TTGGATATTTAG-TTGA
*
50665349 ATGATTTGGTTGGATATTTAGTTGA
1 ATGACTTGGTTGGATATTTAGTTGA
50665374 AT
1 AT
50665376 TTAAGGCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 15 0.62
26 5 0.21
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (25 bp):
ATGACTTGGTTGGATATTTAGTTGA
Found at i:50669720 original size:30 final size:30
Alignment explanation
Indices: 50669685--50669745 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
50669675 TTTGGATCCT
*
50669685 AAATCCATATATGACCCCATATAAGCCTAA
1 AAATCCATATATGACCCCATATAAACCTAA
50669715 AAATCCATATATGACCCCATATAAACCTAA
1 AAATCCATATATGACCCCATATAAACCTAA
50669745 A
1 A
50669746 TCAATATGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.46, C:0.26, G:0.05, T:0.23
Consensus pattern (30 bp):
AAATCCATATATGACCCCATATAAACCTAA
Found at i:50669747 original size:28 final size:28
Alignment explanation
Indices: 50669682--50669752 Score: 106
Period size: 30 Copynumber: 2.5 Consensus size: 28
50669672 GGATTTGGAT
*
50669682 CCTAAATCCATATATGACCCCATATAAG
1 CCTAAATCCATATATGACCCCATATAAA
50669710 CCTAAAAATCCATATATGACCCCATATAAA
1 CCT--AAATCCATATATGACCCCATATAAA
*
50669740 CCTAAATCAATAT
1 CCTAAATCCATAT
50669753 GTGTGGGCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 12 0.31
30 27 0.69
ACGTcount: A:0.44, C:0.27, G:0.04, T:0.25
Consensus pattern (28 bp):
CCTAAATCCATATATGACCCCATATAAA
Found at i:50672341 original size:19 final size:19
Alignment explanation
Indices: 50672318--50672355 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
50672308 TAATTTAATA
50672318 TTTTTTATAAAAATAATTAC
1 TTTTTTATAAAAA-AATTAC
*
50672338 TTTTTTTTAAAAAAATTA
1 TTTTTTATAAAAAAATTA
50672356 TAAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTTTATAAAAAAATTAC
Found at i:50672379 original size:9 final size:9
Alignment explanation
Indices: 50672348--50672576 Score: 53
Period size: 10 Copynumber: 24.6 Consensus size: 9
50672338 TTTTTTTTAA
50672348 AAAAATTAT
1 AAAAATTAT
* *
50672357 AAAAAATAAG
1 -AAAAATTAT
50672367 AAAAATTAT
1 AAAAATTAT
*
50672376 AAAAAAAATATT
1 --AAAAATTA-T
* *
50672388 AAAACTAAT
1 AAAAATTAT
* *
50672397 ATAAACT-T
1 AAAAATTAT
50672405 -AAAATTAT
1 AAAAATTAT
50672413 -AAAA-TAT
1 AAAAATTAT
50672420 AAAAATCTA-
1 AAAAAT-TAT
*
50672429 ATAAATTAT
1 AAAAATTAT
50672438 ACAAGAATT-T
1 A-AA-AATTAT
50672448 ATAAAATTAAT
1 A-AAAATT-AT
*
50672459 AAAACTTATTT
1 AAAAATTA--T
50672470 AAAATATT-T
1 AAAA-ATTAT
*
50672479 -AAAATTAG
1 AAAAATTAT
50672487 AAAAATGTAT
1 AAAAAT-TAT
* * *
50672497 TAGAATTCT
1 AAAAATTAT
* *
50672506 -TAAATAAT
1 AAAAATTAT
*
50672514 AATAAATTGTT
1 AA-AAATT-AT
*
50672525 AAAATTTAT
1 AAAAATTAT
*
50672534 AAAAAAATAT
1 -AAAAATTAT
*
50672544 TAAAATTAT
1 AAAAATTAT
* *
50672553 ATAAACTTAC
1 A-AAAATTAT
50672563 AAAAATTAT
1 AAAAATTAT
50672572 AAAAA
1 AAAAA
50672577 AATAAAAACT
Statistics
Matches: 154, Mismatches: 42, Indels: 47
0.63 0.17 0.19
Matches are distributed among these distances:
7 10 0.06
8 19 0.12
9 49 0.32
10 52 0.34
11 21 0.14
12 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:50674991 original size:11 final size:11
Alignment explanation
Indices: 50674971--50675018 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
50674961 ATTAACCATT
50674971 TAATAATAAAA
1 TAATAATAAAA
*
50674982 TAATACTAAAAA
1 TAATAAT-AAAA
**
50674994 TCTTAATAAAA
1 TAATAATAAAA
*
50675005 TAATAATTAAA
1 TAATAATAAAA
50675016 TAA
1 TAA
50675019 CATTTATCTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
11 21 0.72
12 8 0.28
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:50675536 original size:187 final size:187
Alignment explanation
Indices: 50675220--50675594 Score: 732
Period size: 187 Copynumber: 2.0 Consensus size: 187
50675210 TTTTCCTTAG
50675220 TTTCTAAATTATTCCACCCTTAAATATTTACACTATTGGTCCTTCAAATTTTTCATATTTACACT
1 TTTCTAAATTATTCCACCCTTAAATATTTACACTATTGGTCCTTCAAATTTTTCATATTTACACT
50675285 TTAACCCCTCAAATTTGTAGTATTTACTTTTGGGCAACAAAACTTTTCTCACTTTTGCAATTTAA
66 TTAACCCCTCAAATTTGTAGTATTTACTTTTGGGCAACAAAACTTTTCTCACTTTTGCAATTTAA
50675350 TATTTTCTTGAATTAATATGTCATAATATACTTCCCAATGTTGACATAACTCAATAT
131 TATTTTCTTGAATTAATATGTCATAATATACTTCCCAATGTTGACATAACTCAATAT
*
50675407 TTTCTAAATTATTCCACCCTTAAATATTTACACTATTGGTCCTTCAACTTTTTCATATTTACACT
1 TTTCTAAATTATTCCACCCTTAAATATTTACACTATTGGTCCTTCAAATTTTTCATATTTACACT
*
50675472 TTAACCCCTCAAATTTGTAGTATTTACTTTTGGGCAACAAAACTTTTCTCACTTTTGTAATTTAA
66 TTAACCCCTCAAATTTGTAGTATTTACTTTTGGGCAACAAAACTTTTCTCACTTTTGCAATTTAA
50675537 TATTTTCTTGAATTAATATGTCATAATATACTTCCCAATGTTGACATAACTCAATAT
131 TATTTTCTTGAATTAATATGTCATAATATACTTCCCAATGTTGACATAACTCAATAT
50675594 T
1 T
50675595 ACCCTTTTTA
Statistics
Matches: 186, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
187 186 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (187 bp):
TTTCTAAATTATTCCACCCTTAAATATTTACACTATTGGTCCTTCAAATTTTTCATATTTACACT
TTAACCCCTCAAATTTGTAGTATTTACTTTTGGGCAACAAAACTTTTCTCACTTTTGCAATTTAA
TATTTTCTTGAATTAATATGTCATAATATACTTCCCAATGTTGACATAACTCAATAT
Found at i:50676188 original size:10 final size:11
Alignment explanation
Indices: 50676162--50676187 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50676152 TCAATTCAAA
50676162 TTTTTATAATT
1 TTTTTATAATT
50676173 TTTTTATAATT
1 TTTTTATAATT
50676184 TTTT
1 TTTT
50676188 AAGTTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:50676345 original size:27 final size:28
Alignment explanation
Indices: 50676305--50676379 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 28
50676295 GTTTAATTAG
*
50676305 TTTTATATTTTTTATAATTGTTA-AT-AA
1 TTTTATATTTTTTAAAATT-TTATATCAA
50676332 TTTTATGA-TTTTTAAAATTTTATATCAA
1 TTTTAT-ATTTTTTAAAATTTTATATCAA
* *
50676360 TTTT-CATTTTTTAATATTTT
1 TTTTATATTTTTTAAAATTTT
50676380 TTTATTTTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
26 4 0.10
27 30 0.73
28 7 0.17
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTATATTTTTTAAAATTTTATATCAA
Found at i:50676352 original size:17 final size:18
Alignment explanation
Indices: 50676314--50676355 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
50676304 GTTTTATATT
50676314 TTTTATAATTGTTAATAA
1 TTTTATAATTGTTAATAA
* *
50676332 TTTTATGATTTTTAA-AA
1 TTTTATAATTGTTAATAA
50676349 TTTTATA
1 TTTTATA
50676356 TCAATTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TTTTATAATTGTTAATAA
Found at i:50676381 original size:18 final size:17
Alignment explanation
Indices: 50676360--50676418 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 17
50676350 TTTATATCAA
*
50676360 TTTTCATTTTTTAATATT
1 TTTTTATTTTTTAATA-T
50676378 TTTTTATTTTTCTATAATAT
1 TTTTTA-TTTT-T-TAATAT
50676398 TTTCTTATTTTTTAATAT
1 TTT-TTATTTTTTAATAT
50676416 TTT
1 TTT
50676419 ATGGGAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 14 0.39
19 5 0.14
20 9 0.25
21 8 0.22
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTATTTTTTAATAT
Found at i:50680954 original size:18 final size:18
Alignment explanation
Indices: 50680931--50680966 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
50680921 GGTAAATGAT
50680931 ATCCTCTCATTAGCATTA
1 ATCCTCTCATTAGCATTA
50680949 ATCCTCTCATTAGCATTA
1 ATCCTCTCATTAGCATTA
50680967 CATGGTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.39
Consensus pattern (18 bp):
ATCCTCTCATTAGCATTA
Found at i:50682694 original size:27 final size:27
Alignment explanation
Indices: 50682664--50682718 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
50682654 AGAAATGGAT
*
50682664 ATGAGATGGGAAATGGAATA-TGAAATG
1 ATGAAATGGGAAAT-GAATATTGAAATG
*
50682691 ATGAAATGGGATATGAATATTGAAATG
1 ATGAAATGGGAAATGAATATTGAAATG
50682718 A
1 A
50682719 ATTCATGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.25
Consensus pattern (27 bp):
ATGAAATGGGAAATGAATATTGAAATG
Found at i:50682698 original size:20 final size:18
Alignment explanation
Indices: 50682651--50682707 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 18
50682641 GATGACAAGG
*
50682651 ATGAGAAATGGATATGAG
1 ATGAGAAATGGATATGAA
*
50682669 ATGGGAAATGGAATATGAA
1 ATGAGAAATGG-ATATGAA
50682688 ATGATGAAATGGGATATGAA
1 ATGA-GAAAT-GGATATGAA
50682708 TATTGAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 10 0.30
19 9 0.27
20 12 0.36
21 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.32, T:0.23
Consensus pattern (18 bp):
ATGAGAAATGGATATGAA
Found at i:50683177 original size:18 final size:18
Alignment explanation
Indices: 50683154--50683193 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
50683144 TTTTTGTATA
50683154 TATGGTTGTGGTTGAGGC
1 TATGGTTGTGGTTGAGGC
50683172 TATGGTTGTGGTTGAGGC
1 TATGGTTGTGGTTGAGGC
50683190 TATG
1 TATG
50683194 TATGGTATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.12, C:0.05, G:0.42, T:0.40
Consensus pattern (18 bp):
TATGGTTGTGGTTGAGGC
Found at i:50685284 original size:87 final size:87
Alignment explanation
Indices: 50685182--50685511 Score: 497
Period size: 87 Copynumber: 3.8 Consensus size: 87
50685172 GCTAGTGCTT
* *
50685182 AGGAAGGCAAGATCTGGTATCTTTAACCAGCTCTACTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
50685247 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
50685269 AGGAAGGCAAGATCTG-TCATCTCTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCT-ATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTT
* *
50685333 TCGATCTGCTTCGCTG--ATCTGT
65 TCGATCTGCTTCGCTGTTAAC-GC
* * * *
50685355 AGGAAGGCGAGATCTGCT-TCTTTAACCAGCTCCACTGCAATCGATAGAGGTAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* *
50685419 CGATCTGCTTCACTGTTAAAGC
66 CGATCTGCTTCGCTGTTAACGC
*
50685441 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTATTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
50685506 TGATCT
66 CGATCT
50685512 TCACTGATCT
Statistics
Matches: 218, Mismatches: 19, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
85 58 0.27
86 35 0.16
87 125 0.57
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (87 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
CGATCTGCTTCGCTGTTAACGC
Found at i:50685446 original size:172 final size:173
Alignment explanation
Indices: 50685159--50685511 Score: 543
Period size: 172 Copynumber: 2.0 Consensus size: 173
50685149 ATTCACCGCC
* *
50685159 TTCGATCTGCTCCGCTAGTGCTTAGGAAGGCAAGATCTGGTATCTTTAACCAGCTCTACTGCAAC
1 TTCGATCTGCTCCGCTAGTGCTTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
* * *
50685224 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTG-TCA
66 CGATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAAAGCAGGAAGGCAAGATCTGCT-A
*
50685288 TCTCTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTT
130 TCTCTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTATT
* *
50685332 TTCGATCTGCTTCGCT-GAT-CTGTAGGAAGGCGAGATCTGCT-TCTTTAACCAGCTCCACTGCA
1 TTCGATCTGCTCCGCTAG-TGCT-TAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
* *
50685394 ATCGATAGAGGTAAGGCTTTGTTTTCGATCTGCTTCACTGTTAAAGCAGGAAGGCAAGATCTGCT
64 ACCGATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAAAGCAGGAAGGCAAGATCTGCT
*
50685459 ATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTATT
129 ATCTCTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTATT
*
50685504 TTTGATCT
1 TTCGATCT
50685512 TCACTGATCT
Statistics
Matches: 165, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
172 131 0.79
173 34 0.21
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (173 bp):
TTCGATCTGCTCCGCTAGTGCTTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
CGATAGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAAAGCAGGAAGGCAAGATCTGCTAT
CTCTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTATT
Found at i:50700516 original size:15 final size:15
Alignment explanation
Indices: 50700496--50700527 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50700486 ACATATATGG
*
50700496 AAAATAAAATAAGAT
1 AAAATAAAATAACAT
50700511 AAAATAAAATAACAT
1 AAAATAAAATAACAT
50700526 AA
1 AA
50700528 TATATAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAATAAAATAACAT
Found at i:50700778 original size:3 final size:3
Alignment explanation
Indices: 50700765--50700799 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
50700755 AATAGTAAGG
50700765 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50700800 CTAAACAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:50702550 original size:42 final size:42
Alignment explanation
Indices: 50702487--50702737 Score: 177
Period size: 42 Copynumber: 5.9 Consensus size: 42
50702477 GATAAATCTC
* * * *
50702487 ATCTGCTCCGCTGTAATCTCA-GGAGATAAGATTCTGGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATTCT-GATTCA
* *
50702529 ATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAATTCTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATTCTG--A-T-TCA
* * * * *
50702574 GTCTACTCCACTGTAACCTCAGGGTGATAAGA-CCTGATGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATTCTGATTCA
** * * * * *
50702615 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTATTTA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATTCTGATTCA
** * * *
50702657 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATT-CT-GATTCA
** *
50702701 ATCTACTCCGTTGTAATCTCAGGGAGATAAGA-TCTGA
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATTCTGA
50702738 AATTCTTGGT
Statistics
Matches: 164, Mismatches: 37, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
41 30 0.18
42 55 0.34
43 14 0.09
44 31 0.19
45 34 0.21
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (42 bp):
ATCTACTCCACTGTAACCTCAGGGAGATAAGATTCTGATTCA
Found at i:50702589 original size:45 final size:44
Alignment explanation
Indices: 50702483--50702777 Score: 164
Period size: 45 Copynumber: 6.8 Consensus size: 44
50702473 CAGAGATAAA
* * * **
50702483 TCTC-ATCTGCTCCGCTGTAATCTCA-GGAGATAAGATTCTG-GC
1 TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAT
* *
50702525 T-TCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AAT
* * *
50702569 TCTCGGTCTACTCCACTGTAACCTCAGGGTGATAAGACCTG-A-
1 TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT
* ** * * *
50702611 T-GCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TAT
1 TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAT
* ** * * *
50702654 T-T-AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-T-ACT
1 TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT
* * ** *
50702694 AGCTTCAATCTACTCCGTTGTAATCTCAGGGAGATAAGATCTGAAAT
1 -TC-TCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AAT
* * ** *
50702741 TCTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA
50702778 CCTGTATAAT
Statistics
Matches: 194, Mismatches: 44, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
40 2 0.01
41 30 0.15
42 53 0.27
43 13 0.07
44 30 0.15
45 63 0.32
46 1 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAT
Found at i:50702643 original size:86 final size:85
Alignment explanation
Indices: 50702488--50702781 Score: 265
Period size: 86 Copynumber: 3.4 Consensus size: 85
50702478 ATAAATCTCA
* * * * * * *
50702488 TCTGCTCCGCTGTAATCTCA-GGAGATAAGATTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGA-CCT-GATGCAATCTACTCCGCTGTAACTTCAGG
50702552 GAGATAAGATCTGAAATTCTCGG
64 GAGATAAGATCTGAAATTCT-GG
* * * * * *
50702575 TCTACTCCACTGTAACCTCAGGGTGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCCGCTGTAACTTCAGGGA
* **
50702640 GATAAGATCCT--TATT-TAA
66 GATAAGAT-CTGAAATTCTGG
* * * * * *
50702658 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTACTCCGTTGTAA-TCTCA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGCAATCTACTCCGCTGTAACT-TCA
50702722 GGGAGATAAGATCTGAAATTCTTGG
62 GGGAGATAAGATCTGAAATTC-TGG
*
50702747 TCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
50702782 TATAATAAAC
Statistics
Matches: 162, Mismatches: 35, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
83 26 0.16
84 1 0.01
85 8 0.05
86 63 0.39
87 26 0.16
88 9 0.06
89 29 0.18
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (85 bp):
TCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCCGCTGTAACTTCAGGGA
GATAAGATCTGAAATTCTGG
Found at i:50715117 original size:15 final size:15
Alignment explanation
Indices: 50715097--50715128 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50715087 ACATATGTGG
*
50715097 AAAATAAAATAAGAT
1 AAAATAAAATAACAT
50715112 AAAATAAAATAACAT
1 AAAATAAAATAACAT
50715127 AA
1 AA
50715129 TATATAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAATAAAATAACAT
Found at i:50715377 original size:3 final size:3
Alignment explanation
Indices: 50715369--50715425 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
50715359 AATAGTAAGG
50715369 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50715417 ATA ATA ATA
1 ATA ATA ATA
50715426 CTAAACAACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50716349 original size:17 final size:17
Alignment explanation
Indices: 50716327--50716359 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50716317 TCGTATATAT
*
50716327 ATAAAAAACAAGCAAAC
1 ATAAAAAACAAACAAAC
50716344 ATAAAAAACAAACAAA
1 ATAAAAAACAAACAAA
50716360 AAAAGAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.15, G:0.03, T:0.06
Consensus pattern (17 bp):
ATAAAAAACAAACAAAC
Found at i:50716750 original size:15 final size:15
Alignment explanation
Indices: 50716724--50716756 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
50716714 TTTGATGATT
50716724 TTGGGCTATTGGGCTG
1 TTGGGCTATTGGG-TG
50716740 TTGGG-TATTGGGTG
1 TTGGGCTATTGGGTG
50716754 TTG
1 TTG
50716757 TAATTGGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.06, C:0.06, G:0.45, T:0.42
Consensus pattern (15 bp):
TTGGGCTATTGGGTG
Found at i:50718394 original size:17 final size:18
Alignment explanation
Indices: 50718352--50718395 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
50718342 TATTCATTTT
50718352 TTCCAAAAATAATTTATA
1 TTCCAAAAATAATTTATA
***
50718370 TGATAAAAATAATTTA-A
1 TTCCAAAAATAATTTATA
50718387 TTCCAAAAA
1 TTCCAAAAA
50718396 AAATACTGAT
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (18 bp):
TTCCAAAAATAATTTATA
Found at i:50719669 original size:30 final size:30
Alignment explanation
Indices: 50719626--50719693 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
50719616 TCCACCCCTC
50719626 TCTTTTC-TTTTCTGGTATGAAAATATTAT
1 TCTTTTCTTTTTCTGGTATGAAAATATTAT
50719655 TCTTTTCTTTTTCTGGTATGAAAATATTAT
1 TCTTTTCTTTTTCTGGTATGAAAATATTAT
50719685 TCTTTTCTT
1 TCTTTTCTT
50719694 CCATAATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.18
30 31 0.82
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (30 bp):
TCTTTTCTTTTTCTGGTATGAAAATATTAT
Found at i:50720393 original size:28 final size:28
Alignment explanation
Indices: 50720361--50720418 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
50720351 ATATGTATGT
50720361 ATGTGCGTATTTCTTAGTGCTATAGAAG
1 ATGTGCGTATTTCTTAGTGCTATAGAAG
50720389 ATGTGCGTATTTCTTAGTGCTATAGAAG
1 ATGTGCGTATTTCTTAGTGCTATAGAAG
50720417 AT
1 AT
50720419 CTTCTAGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.10, G:0.24, T:0.40
Consensus pattern (28 bp):
ATGTGCGTATTTCTTAGTGCTATAGAAG
Found at i:50722064 original size:12 final size:11
Alignment explanation
Indices: 50722033--50722062 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
50722023 TTAAGTAAAC
50722033 AAATAAATATT
1 AAATAAATATT
50722044 AAATGAAATATT
1 AAAT-AAATATT
50722056 AAATAAA
1 AAATAAA
50722063 ATGTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (11 bp):
AAATAAATATT
Found at i:50723748 original size:58 final size:58
Alignment explanation
Indices: 50723684--50723799 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
50723674 TTCAGGGAGA
50723684 TAAGGTTTAATATGATAAGATCTAGTTCGACCTACTACAACTTCAGAGGTATATGATT
1 TAAGGTTTAATATGATAAGATCTAGTTCGACCTACTACAACTTCAGAGGTATATGATT
50723742 TAAGGTTTAATATGATAAGATCTAGTTCGACCTACTACAACTTCAGAGGTATATGATT
1 TAAGGTTTAATATGATAAGATCTAGTTCGACCTACTACAACTTCAGAGGTATATGATT
50723800 CATCGTTTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (58 bp):
TAAGGTTTAATATGATAAGATCTAGTTCGACCTACTACAACTTCAGAGGTATATGATT
Found at i:50723862 original size:44 final size:43
Alignment explanation
Indices: 50723814--50724144 Score: 277
Period size: 44 Copynumber: 7.7 Consensus size: 43
50723804 GTTTTAATCC
50723814 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTCGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTT-TTTCGTCT
* * * *
50723858 GCTCCACTGCAACTTTAGGGAGATAAGACTGG---ATGCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTTTCG-TCT
* * * ** *
50723899 GCTCTACTGCAACTTCAGAGAGATGAGATCTATGG-TTTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTTTTCGTCT
* * *
50723944 GCTTCACTGCAATTTCAGAGAGATAAGATTGGTTTATTTCGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTT-TTTCGTCT
* *
50723988 GCTCCACTGCAACTTCAGGGAGATAAGATTGG---ATGCGATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTTTCG-TCT
* * * *
50724029 ACTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATC--C-
1 GCTCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTT-TTCGTCT
* * * *
50724073 GCTCCACTACAACTTCAGGGAGATAGGGTTGATTTATTTCGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTT-TTTCGTCT
50724117 GCTCCACTGCAACTTCAGGGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
50724145 CTGGATACGA
Statistics
Matches: 224, Mismatches: 43, Indels: 40
0.73 0.14 0.13
Matches are distributed among these distances:
40 6 0.03
41 62 0.28
42 5 0.02
43 5 0.02
44 117 0.52
45 27 0.12
46 1 0.00
48 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (43 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTTTTCGTCT
Found at i:50724212 original size:44 final size:44
Alignment explanation
Indices: 50723773--50724226 Score: 232
Period size: 44 Copynumber: 10.5 Consensus size: 44
50723763 CTAGTTCGAC
* * *
50723773 CTACTACAACTTCAGAG-GTATATGAT-TCATCGTTTTAATCCGCT
1 CTACTGCAACTTCAGAGAG-ATAAGATCT-ATGGTTTTAATCCGCT
* * *
50723817 CCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTCT-TTCGTCTGCT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTT-TAATC--C-GCT
* * * * *** *
50723861 CCACTGCAACTTTAGGGAGATAAGA-C--TGGATGCGATCTGCT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
*
50723902 CTACTGCAACTTCAGAGAGATGAGATCTATGGTTTTTAATCCGCT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGG-TTTTAATCCGCT
* *
50723947 -TCACTGCAATTTCAGAGAGATAAGA--T-TGG-TTTATTTCGTCTGCT
1 CT-ACTGCAACTTCAGAGAGATAAGATCTATGGTTTTA-ATC--C-GCT
* * * *** **
50723991 CCACTGCAACTTCAGGGAGATAAGA--T-TGGATGCGATCTACT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
50724032 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
* * * * * * ** *
50724076 CCACTACAACTTCAGGGAGATAGGGT-TGAT-TTATTTCGTCTGCT
1 CTACTGCAACTTCAGAGAGATAAGATCT-ATGGT-TTTAATCCGCT
* * * *** *
50724120 CCACTGCAACTTCAGGGAGATAAGA-C--TGGATACGATCTGCT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
* *
50724161 GTACTGCAACTTCAGAGAGATGAGATCTATGGTTTTAATCCGCT
1 CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
*
50724205 CTACTGCAACTTCAGGGAGATA
1 CTACTGCAACTTCAGAGAGATA
50724227 GAAAGTAAGA
Statistics
Matches: 311, Mismatches: 71, Indels: 56
0.71 0.16 0.13
Matches are distributed among these distances:
40 4 0.01
41 87 0.28
42 6 0.02
43 7 0.02
44 177 0.57
45 30 0.10
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
CTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCT
Found at i:50724214 original size:85 final size:84
Alignment explanation
Indices: 50723814--50724226 Score: 295
Period size: 85 Copynumber: 4.8 Consensus size: 84
50723804 GTTTTAATCC
* * * * *
50723814 GCTCCACTGCAACTTCAGGGAGATAAGA-T-TGGTTTCT-TTCGTCTGCTCCACTGCAACTTTAG
1 GCTCCACTGCAACTTCAGAGAGATGAGATTATGGTTT-TAATC--C-GCTCTACTGCAACTTCAG
*
50723876 GGAGATAAGACTGGATGCGATCT
62 GGAGATAAGACTGGATTCGATCT
* * *
50723899 GCTCTACTGCAACTTCAGAGAGATGAGATCTATGGTTTTTAATCCGCT-TCACTGCAATTTCAGA
1 GCTCCACTGCAACTTCAGAGAGATGAGAT-TATGG-TTTTAATCCGCTCT-ACTGCAACTTCAGG
*
50723963 GAGATAAGATTGGTTTATTTCG-TCT
63 GAGATAAGACTGG---A-TTCGATCT
* * * *** ** *
50723988 GCTCCACTGCAACTTCAGGGAGATAAGA-T-TGGATGCGATCTACTCTACTGCAACTTCAGAGAG
1 GCTCCACTGCAACTTCAGAGAGATGAGATTATGGTTTTAATCCGCTCTACTGCAACTTCAGGGAG
* ** *
50724051 ATAAGATCTATGGTTTTAATCC
66 ATAAGA-C--TGGATTCGATCT
* * * * ** * *
50724073 GCTCCACTACAACTTCAGGGAGAT-AGGGTTGAT-TTATTTCGTCTGCTCCACTGCAACTTCAGG
1 GCTCCACTGCAACTTCAGAGAGATGA-GATT-ATGGT-TTTAATCCGCTCTACTGCAACTTCAGG
*
50724136 GAGATAAGACTGGATACGATCT
63 GAGATAAGACTGGATTCGATCT
**
50724158 GCTGTACTGCAACTTCAGAGAGATGAGATCTATGGTTTTAATCCGCTCTACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGAGAGATGAGAT-TATGGTTTTAATCCGCTCTACTGCAACTTCAGGGA
50724223 GATA
65 GATA
50724227 GAAAGTAAGA
Statistics
Matches: 254, Mismatches: 51, Indels: 46
0.72 0.15 0.13
Matches are distributed among these distances:
84 3 0.01
85 139 0.55
86 34 0.13
87 4 0.02
88 37 0.15
89 34 0.13
90 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (84 bp):
GCTCCACTGCAACTTCAGAGAGATGAGATTATGGTTTTAATCCGCTCTACTGCAACTTCAGGGAG
ATAAGACTGGATTCGATCT
Found at i:50724227 original size:129 final size:129
Alignment explanation
Indices: 50723804--50724226 Score: 702
Period size: 129 Copynumber: 3.3 Consensus size: 129
50723794 ATGATTCATC
*
50723804 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTTCGTCTGCTCCACTGCA
1 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTTCGTCTGCTCCACTGCA
*
50723869 ACTTTAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTATG
66 ACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTATG
* * *
50723933 GTTTTTAATCCGCTTCACTGCAATTTCAGAGAGATAAGATTGGTTTATTTCGTCTGCTCCACTGC
1 G-TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTTCGTCTGCTCCACTGC
* * *
50723998 AACTTCAGGGAGATAAGATTGGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATG
65 AACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTATG
* * * *
50724063 GTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGGTTGATTTATTTCGTCTGCTCCACTGCA
1 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTTCGTCTGCTCCACTGCA
* *
50724128 ACTTCAGGGAGATAAGACTGGATACGATCTGCTGTACTGCAACTTCAGAGAGATGAGATCTATG
66 ACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTATG
*
50724192 GTTTTAATCCGCTCTACTGCAACTTCAGGGAGATA
1 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
50724227 GAAAGTAAGA
Statistics
Matches: 271, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
129 150 0.55
130 121 0.45
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTTCGTCTGCTCCACTGCA
ACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTATG
Found at i:50724539 original size:50 final size:50
Alignment explanation
Indices: 50724299--50724955 Score: 282
Period size: 50 Copynumber: 13.2 Consensus size: 50
50724289 CGCTATTGCG
* * ** *
50724299 GCTTCAATCTTTTTAATTGTAATGTCGGGGAAACAAGATTCACCTTTGTA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTA
* ** * * ** ** * *
50724349 GCTTTAATCTACTCCACTGCACCG-CTAGGAATATAAGATTCACCGTTGCA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAA-GTAAGATTCACCGTTGTA
* * * *
50724399 ACTTTAATCTTTTTAATTGCAATGTCGGGGAACG--AGATTCGCCGTTGTA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAA-GTAAGATTCACCGTTGTA
** * * * * * * *
50724448 GCTTCAATCTGATCCACTGC-ATCGCCAGGAAAGTAAAATTCACCGTTGTG
1 GCTTCAATCTTTTCAATTGCAAT-GTCGGGGAAGTAAGATTCACCGTTGTA
* * * *
50724498 GCTGCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTA
* ** * * ** * * * * *
50724548 GCTTTAATCTGCTCCACTGCACCGCCAGGAAAGTAAGATTCACCATTG-C
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTA
* * *
50724597 GACTTCAATCTTTTTAATTGTAATGTCGGGGAACG--AGATTCGCCGTTGTA
1 G-CTTCAATCTTTTCAATTGCAATGTCGGGGAA-GTAAGATTCACCGTTGTA
* * * * * * **
50724647 GCTTCAAT-TTGATCCATTGC-ATCTCTAGGAAAGTAAGATTCGCCGTTGCG
1 GCTTCAATCTT-TTCAATTGCAATGTC-GGGGAAGTAAGATTCACCGTTGTA
* * * * * * *
50724697 GCTTTAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTCGTA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTA
* ** * * * * ** * * ***
50724747 GCTTTAATCTGCTCTACTGC-ATCGCCAGAAAAGTAAGATTCGCTGTTACG
1 GCTTCAATCTTTTCAATTGCAAT-GTCGGGGAAGTAAGATTCACCGTTGTA
*
50724797 GCTTCAATCTTTTTAATTGCAATGTCGGGGAACG--AGATTCACCGTTGTA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAA-GTAAGATTCACCGTTGTA
* * * ** * **
50724846 GCTTCAAT-TTGATCCACTGC-ATCGTTAGGAAAGTAAGATTCGA-CGTTGCG
1 GCTTCAATCTT-TTCAATTGCAAT-GTCGGGGAAGTAAGATTC-ACCGTTGTA
* * * *
50724896 GCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTA
1 GCTTCAATCTTTTCAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTA
*
50724946 GCTTTAATCT
1 GCTTCAATCT
50724956 GCTCCACTGC
Statistics
Matches: 423, Mismatches: 158, Indels: 52
0.67 0.25 0.08
Matches are distributed among these distances:
48 15 0.04
49 96 0.23
50 290 0.69
51 22 0.05
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
GCTTCAATCTTTTCAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTA
Found at i:50724587 original size:199 final size:199
Alignment explanation
Indices: 50724234--50724967 Score: 1024
Period size: 199 Copynumber: 3.7 Consensus size: 199
50724224 ATAGAAAGTA
* * * * * **
50724234 AGATTCGCCGTTGTAGCTTCAATCAGTTCCACTGCACCACCAAGG-AAGTAAGATTCGCTATTGC
1 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCC-AGGAAAGTAAGATTCACCGTTGC
* * * * * *
50724298 GGCTTCAATCTTTTTAATTGTAATGTCGGGGAAACAAGATTCACCTTTGTAGCTTTAATCTACTC
65 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
* * *
50724363 CACTGCACCGCTAGGAATA-TAAGATTCACCGTTGCAACTTTAATCTTTTTAATTGCAATGTCGG
130 CACTGCACCGCCAGGAA-AGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCAATGTCGG
50724427 GGAACG
194 GGAACG
* *
50724433 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAAATTCACCGTTGTG
1 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCG
*
50724498 GCTGCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCC
66 GCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCC
* *
50724563 ACTGCACCGCCAGGAAAGTAAGATTCACCATTGCGACTTCAATCTTTTTAATTGTAATGTCGGGG
131 ACTGCACCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCAATGTCGGGG
50724628 AACG
196 AACG
* * * * *
50724632 AGATTCGCCGTTGTAGCTTCAATTTGATCCATTGCATCTCTAGGAAAGTAAGATTCGCCGTTGCG
1 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCG
* * * * *
50724697 GCTTTAATATTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCTGTCGTAGCTTTAATCTGCTCT
66 GCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCC
* * * * * *
50724762 ACTGCATCGCCAGAAAAGTAAGATTCGCTGTTACGGCTTCAATCTTTTTAATTGCAATGTCGGGG
131 ACTGCACCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCAATGTCGGGG
50724827 AACG
196 AACG
* * **
50724831 AGATTCACCGTTGTAGCTTCAATTTGATCCACTGCATCGTTAGGAAAGTAAGATTCGA-CGTTGC
1 AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTC-ACCGTTGC
* * *
50724895 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGCTGTCGTAGCTTTAATCTGCTC
65 GGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
50724960 CACTGCAC
130 CACTGCAC
50724968 TGTCAGGGAA
Statistics
Matches: 480, Mismatches: 52, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
198 4 0.01
199 476 0.99
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (199 bp):
AGATTCGCCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCG
GCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCC
ACTGCACCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCAATGTCGGGG
AACG
Found at i:50725294 original size:24 final size:24
Alignment explanation
Indices: 50725262--50725319 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
50725252 TGGATTGCCC
50725262 CCACTGTAATATTCAAAGTTCAAT
1 CCACTGTAATATTCAAAGTTCAAT
* * *
50725286 CCACTGTAATATTCAAGGTTTAGT
1 CCACTGTAATATTCAAAGTTCAAT
50725310 CCACTGTAAT
1 CCACTGTAAT
50725320 TTTGGGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (24 bp):
CCACTGTAATATTCAAAGTTCAAT
Found at i:50726234 original size:18 final size:17
Alignment explanation
Indices: 50726202--50726250 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
50726192 TTGGCCTCTC
50726202 CTTTTTTCTTTTTTTGTT
1 CTTTTTTC-TTTTTTGTT
*
50726220 CTTCTTTTCTTTTTTTTT
1 CTT-TTTTCTTTTTTGTT
*
50726238 CTTTTTTGTTTTT
1 CTTTTTTCTTTTT
50726251 CTTCAAGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 9 0.32
18 14 0.50
19 5 0.18
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (17 bp):
CTTTTTTCTTTTTTGTT
Found at i:50729352 original size:19 final size:20
Alignment explanation
Indices: 50729323--50729374 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
50729313 CGCTTCGTGA
* *
50729323 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
50729342 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
50729362 AAATG-AATGCAAA
1 AAATGTAATGCAAA
50729375 AAGAGACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:50731501 original size:19 final size:19
Alignment explanation
Indices: 50731459--50731496 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
50731449 TGTAAGTTTG
*
50731459 ATAAAAATTAAGTAAATAA
1 ATAAAAATTAAATAAATAA
50731478 ATAAAAATTAAATGAAATA
1 ATAAAAATTAAAT-AAATA
50731497 TTAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (19 bp):
ATAAAAATTAAATAAATAA
Found at i:50731507 original size:12 final size:12
Alignment explanation
Indices: 50731475--50731507 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50731465 ATTAAGTAAA
50731475 TAAATAAAA-AT
1 TAAATAAAATAT
*
50731486 TAAATGAAATAT
1 TAAATAAAATAT
50731498 TAAATAAAAT
1 TAAATAAAAT
50731508 GTTTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:50734337 original size:17 final size:17
Alignment explanation
Indices: 50734315--50734349 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
50734305 TAGCTCCTAG
50734315 TGGTCAAAAAATTCCTC
1 TGGTCAAAAAATTCCTC
50734332 TGGTCAAAAAATTCCTC
1 TGGTCAAAAAATTCCTC
50734349 T
1 T
50734350 TAGTGGTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (17 bp):
TGGTCAAAAAATTCCTC
Found at i:50746534 original size:15 final size:15
Alignment explanation
Indices: 50746514--50746569 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
50746504 TAATTTTGAC
*
50746514 GTGTCTGGTAGTGAT
1 GTGTCTGATAGTGAT
* *
50746529 GTGTCTGTTAGTTAT
1 GTGTCTGATAGTGAT
* *
50746544 GTATCTGAAAGTGAT
1 GTGTCTGATAGTGAT
*
50746559 GTGTCTAATAG
1 GTGTCTGATAG
50746570 GATAAGGGTT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.21, C:0.07, G:0.30, T:0.41
Consensus pattern (15 bp):
GTGTCTGATAGTGAT
Found at i:50750630 original size:25 final size:25
Alignment explanation
Indices: 50750595--50750649 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
50750585 GTCACATGAC
50750595 TGTTTTAGTGACTATTTTTTAATAT
1 TGTTTTAGTGACTATTTTTTAATAT
* * *
50750620 TGTTTTGGTGACTATTTTTTAGTTT
1 TGTTTTAGTGACTATTTTTTAATAT
50750645 TGTTT
1 TGTTT
50750650 CATCACATGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (25 bp):
TGTTTTAGTGACTATTTTTTAATAT
Found at i:50752387 original size:3 final size:3
Alignment explanation
Indices: 50752379--50752422 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
50752369 TTCTCTTTTC
* *
50752379 CTT CTT CTT CTT CTT CTT CTT TTT CTT CTT CTT CTT CTT ATT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
50752423 ACTGTATAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:50760449 original size:13 final size:13
Alignment explanation
Indices: 50760431--50760457 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50760421 AAATGTCATG
50760431 GATAACGGGATTA
1 GATAACGGGATTA
50760444 GATAACGGGATTA
1 GATAACGGGATTA
50760457 G
1 G
50760458 GGCAGTCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.22
Consensus pattern (13 bp):
GATAACGGGATTA
Found at i:50763064 original size:94 final size:94
Alignment explanation
Indices: 50762893--50763490 Score: 340
Period size: 94 Copynumber: 6.4 Consensus size: 94
50762883 GTGAAACAAT
* * * * * *
50762893 AAATCCTATACCCCTAAAGTTGTAGTGGGTC-GAATTGAACTTACCATAGCGAGTCTTATCTCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAAGTTACCATAGTGAATCTTATCTCCC
* *
50762957 TGAATTTGTAGTGGAGTAAGATGAAGCTAC
65 TGAAGTTGCAGTGGAGTAAGATGAAGCTAC
* * *
50762987 AAATCTTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACTATAGTGAGTCTTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGTGAATCTTATCTCCCT
*
50763052 GAAGTTGCAGTGGAGGAAGATGAAGCTAC
66 GAAGTTGCAGTGGAGTAAGATGAAGCTAC
* * * * ** * * * * *
50763081 AAATCGTATATCCCTAAAGTTACAGTGCATCGGATTGAAGATA--A-A---ATTCCTATAC-CCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGTGAATCTTAT-CTCCC
* **
50763139 TGAAGTTGCAGTGG-GTCAGAATGAAATTAC
65 TGAAGTTGCAGTGGAGTAAG-ATGAAGCTAC
*** * * *
50763169 AATGGCGAATCCTATTTTCCTAAAGTTGCAGTGAAG-CAAGA-TGAAGCTT--C--A---AATCC
1 -A-----AATCCTATACCCCTGAAGTTGCAGTG-GGTC-AGATTGAAG-TTACCATAGTGAATCT
* * * * *
50763225 TATATCCCTGAATTTGTAATGGA-TCAA-ATTGAAGATAC
57 TATCTCCCTGAAGTTGCAGTGGAGT-AAGA-TGAAGCTAC
* ** * * * ** * * *
50763263 AATTCCTATACCGTTGAAGTTGTAGTGGGTCGGAATGAAACTACAATGGTGAATCGTATCTCCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGTGAATCTTATCTCCCT
* * *
50763328 GAAGTTGCAGTAGAGCAAGATAAAGCTAC
66 GAAGTTGCAGTGGAGTAAGATGAAGCTAC
* * *
50763357 AAATACTATACCCTTGAAGTTGCAGTGGGTC-GAATT-AGAGTTACCATAGTTAATCTTATCTCC
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGA-AGTTACCATAGTGAATCTTATCTCC
* *
50763420 CTGAAGTTGCAGTGGAGCAAGATGAAGTTAC
64 CTGAAGTTGCAGTGGAGTAAGATGAAGCTAC
* * ** * *
50763451 AAATCCTATATCCCTGATGTTATAGTGGATCAAATTGAAG
1 AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAG
50763491 ATACAATTCC
Statistics
Matches: 385, Mismatches: 87, Indels: 64
0.72 0.16 0.12
Matches are distributed among these distances:
87 7 0.02
88 53 0.14
89 2 0.01
91 1 0.00
92 1 0.00
93 4 0.01
94 310 0.81
95 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (94 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACCATAGTGAATCTTATCTCCCT
GAAGTTGCAGTGGAGTAAGATGAAGCTAC
Found at i:50763076 original size:50 final size:48
Alignment explanation
Indices: 50762928--50763081 Score: 140
Period size: 50 Copynumber: 3.2 Consensus size: 48
50762918 TGGGTCGAAT
* * * *
50762928 TGAACTTACCATAGCGAGTCTTATCTCCTTGAATTTGTAGTGGAGTAAGA
1 TGAAGTTA-CATAG-GAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA
* *
50762978 TGAAGCTACA-A--A-TCTTATAC-CCCTGAAGTTGCAGTGG-GTCAGA
1 TGAAGTTACATAGGAGTCTTAT-CTCCCTGAAGTTGCAGTGGAGTAAGA
*
50763021 TTGAAGTTACTATAGTGAGTCTTATCTCCCTGAAGTTGCAGTGGAGGAAGA
1 -TGAAGTTAC-ATAG-GAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA
*
50763072 TGAAGCTACA
1 TGAAGTTACA
50763082 AATCGTATAT
Statistics
Matches: 84, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
43 5 0.06
44 28 0.33
45 3 0.04
46 1 0.01
48 1 0.01
49 5 0.06
50 37 0.44
51 4 0.05
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (48 bp):
TGAAGTTACATAGGAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA
Found at i:50763200 original size:138 final size:138
Alignment explanation
Indices: 50762993--50763370 Score: 461
Period size: 138 Copynumber: 2.7 Consensus size: 138
50762983 CTACAAATCT
* * * * * * *
50762993 TATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGTTACTATAGTGAGTCTTATCTCCCTGAAGTT
1 TATACCCTTGAAGTTGCAGTGGGTCAGAATGAAATTACAATGGTGAATCCTATCTCCCTGAAGTT
* * * **
50763058 GCAGTGGAGGAAGATGAAGCTACAAATCGTATATCCCTAAAGTTACAGTGCATCGGATTGAAGAT
66 GCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAGTTACAATGCATCAAATTGAAGAT
50763123 AAAATTCC
131 AAAATTCC
* * * *
50763131 TATACCCTTGAAGTTGCAGTGGGTCAGAATGAAATTACAATGGCGAATCCTATTTTCCTAAAGTT
1 TATACCCTTGAAGTTGCAGTGGGTCAGAATGAAATTACAATGGTGAATCCTATCTCCCTGAAGTT
* * * * ** *
50763196 GCAGTGAAGCAAGATGAAGCTTCAAATCCTATATCCCTGAATTTGTAATGGATCAAATTGAAGAT
66 GCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAGTTACAATGCATCAAATTGAAGAT
*
50763261 ACAATTCC
131 AAAATTCC
* * * * *
50763269 TATACCGTTGAAGTTGTAGTGGGTCGGAATGAAACTACAATGGTGAATCGTATCTCCCTGAAGTT
1 TATACCCTTGAAGTTGCAGTGGGTCAGAATGAAATTACAATGGTGAATCCTATCTCCCTGAAGTT
* * *
50763334 GCAGTAGAGCAAGATAAAGCTACAAATACTATA-CCCT
66 GCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCT
50763371 TGAAGTTGCA
Statistics
Matches: 202, Mismatches: 38, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
137 4 0.02
138 198 0.98
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (138 bp):
TATACCCTTGAAGTTGCAGTGGGTCAGAATGAAATTACAATGGTGAATCCTATCTCCCTGAAGTT
GCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAGTTACAATGCATCAAATTGAAGAT
AAAATTCC
Found at i:50763465 original size:138 final size:138
Alignment explanation
Indices: 50763314--50763603 Score: 305
Period size: 138 Copynumber: 2.1 Consensus size: 138
50763304 TACAATGGTG
* * * * * *
50763314 AATCGTATCTCCCTGAAGTTGCAGTAGAGCAAGA-TAAAGCTACAAATACTATACCCTTGAAGTT
1 AATCCTATATCCCTGAAGTTACAGTAGAGCAA-ATTAAAGATACAAATACTATACCCCTAAAGTT
* * * * ** * *
50763378 GCAGTGGGTC-GAATTAGAGTTACCATAGTTAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGA
65 GCAATGGGTCAGAATGA-AATTACAATAGCGAATCCTATCTCCCTGAAGTTACAGTGGAGCAAGA
**
50763442 TGAAGTTACA
129 TGAAACTACA
* * * * * * * *
50763452 AATCCTATATCCCTGATGTTATAGTGGATCAAATTGAAGATACAATTCCTATGCCCCTAAAGTTG
1 AATCCTATATCCCTGAAGTTACAGTAGAGCAAATTAAAGATACAAATACTATACCCCTAAAGTTG
* * *
50763517 CAATGGGTCAGAATGAAATTATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGGTGCAAGATG
66 CAATGGGTCAGAATGAAATTACAATAGCGAATCCTATCTCCCTGAAGTTACAGTGGAGCAAGATG
50763582 AAACTACA
131 AAACTACA
50763590 AATCCTATATCCCT
1 AATCCTATATCCCT
50763604 AAATTTACTG
Statistics
Matches: 123, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
137 1 0.01
138 117 0.95
139 5 0.04
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (138 bp):
AATCCTATATCCCTGAAGTTACAGTAGAGCAAATTAAAGATACAAATACTATACCCCTAAAGTTG
CAATGGGTCAGAATGAAATTACAATAGCGAATCCTATCTCCCTGAAGTTACAGTGGAGCAAGATG
AAACTACA
Found at i:50763583 original size:50 final size:48
Alignment explanation
Indices: 50763529--50763677 Score: 110
Period size: 50 Copynumber: 3.1 Consensus size: 48
50763519 ATGGGTCAGA
50763529 ATGAAATTATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGGTGCAAG
1 ATGAAA-TATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGG-GCAAG
* * * * * * *
50763579 ATGAAA-CT-A---CAAATCCTATATCCCTAAATTTACTGTGGGTCAAA
1 ATGAAATATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGGG-CAAG
* * * * *
50763623 ATGAAACTACAATGGTGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAAG
1 ATGAAA-TATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGG-GCAAG
50763673 ATGAA
1 ATGAA
50763678 GATACAAATC
Statistics
Matches: 72, Mismatches: 19, Indels: 16
0.67 0.18 0.15
Matches are distributed among these distances:
43 1 0.01
44 33 0.46
47 2 0.03
48 1 0.01
50 34 0.47
51 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGAAATATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGGGCAAG
Found at i:50763590 original size:94 final size:94
Alignment explanation
Indices: 50763452--50763744 Score: 313
Period size: 94 Copynumber: 3.1 Consensus size: 94
50763442 TGAAGTTACA
* * * * *
50763452 AATCCTATATCCCTGATGTTATAGTGGAT-CAA-ATTGAAGATACAATTCCTATGCCCCTAAAGT
1 AATCCTATCTCCCTGAAGTTACAGTGG-TGCAAGA-TGAAGATACAAATCCTATACCCCTAAAGT
* * *
50763515 TGCAATGGGTCAGAATGAAATTATAATGGCG
64 TGCAGTGGGTCAGAATGAAACTACAATGGCG
* *
50763546 AATCCTATCTCCCTGAAGTTACAGTGGTGCAAGATGAA-ACTACAAATCCTATATCCCTAAATTT
1 AATCCTATCTCCCTGAAGTTACAGTGGTGCAAGATGAAGA-TACAAATCCTATACCCCTAAAGTT
* * * *
50763610 ACTGTGGGTCAAAATGAAACTACAATGGTG
65 GCAGTGGGTCAGAATGAAACTACAATGGCG
* * * * * *
50763640 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAAGATGAAGATACAAATCCTATACCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTACAGTGGTGCAAGATGAAGATACAAATCCTATACCCCTAAAGTTG
* * * *
50763705 CAGTGGGTCAGATTGAAGCTACCATGGTG
66 CAGTGGGTCAGAATGAAACTACAATGGCG
*
50763734 AATCTTATCTC
1 AATCCTATCTC
50763745 TCTAAGGATT
Statistics
Matches: 167, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
93 2 0.01
94 163 0.98
95 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (94 bp):
AATCCTATCTCCCTGAAGTTACAGTGGTGCAAGATGAAGATACAAATCCTATACCCCTAAAGTTG
CAGTGGGTCAGAATGAAACTACAATGGCG
Found at i:50763722 original size:232 final size:232
Alignment explanation
Indices: 50763130--50763722 Score: 710
Period size: 232 Copynumber: 2.6 Consensus size: 232
50763120 GATAAAATTC
* * * * * *
50763130 CTATACCCTTGAAGTTGCAGTGGGTCAGAATGAAATTACAATGGCGAATCCTAT-TTTCCTAAAG
1 CTATACCCTTAAAGTTACAGTGGGTCAGAATGAAATTACAATGGTGAATCTTATCTCT-CTGAAG
* * * * *
50763194 TTGCAGTGAAGCAAGATGAAGCTTCAAATCCTATATCCCTGAATTTGTAATGGATCAAATTGAAG
65 TTGCAGTGGAGCAAGATGAAGATACAAATCCTATATCCCTGAAGTTGTAGTGGATCAAATTGAAG
** * * * * * *
50763259 ATACAATTCCTATACCGTTGAAGTTGTAGTGGGTCGGAATGAAACTACAATGGTGAATCGTATCT
130 ATACAATTCCTATACCCCTAAAGTTGCAATGGGTCAGAATGAAACTACAATGGCGAATCCTATCT
*
50763324 CCCTGAAGTTGCAGTAGAGCAAGATAAAGCTACAAATA
195 CCCTGAAGTTACAGTAGAGCAAGATAAAGCTACAAATA
* * * * * * * *
50763362 CTATACCCTTGAAGTTGCAGTGGGTC-GAATTAGAGTTACCATAGTTAATCTTATCTCCCTGAAG
1 CTATACCCTTAAAGTTACAGTGGGTCAGAATGA-AATTACAATGGTGAATCTTATCTCTCTGAAG
* * *
50763426 TTGCAGTGGAGCAAGATGAAGTTACAAATCCTATATCCCTGATGTTATAGTGGATCAAATTGAAG
65 TTGCAGTGGAGCAAGATGAAGATACAAATCCTATATCCCTGAAGTTGTAGTGGATCAAATTGAAG
* * *
50763491 ATACAATTCCTATGCCCCTAAAGTTGCAATGGGTCAGAATGAAATTATAATGGCGAATCCTATCT
130 ATACAATTCCTATACCCCTAAAGTTGCAATGGGTCAGAATGAAACTACAATGGCGAATCCTATCT
* * *
50763556 CCCTGAAGTTACAGTGGTGCAAGATGAAA-CTACAAATC
195 CCCTGAAGTTACAGTAGAGCAAGAT-AAAGCTACAAATA
* * * *
50763594 CTATATCCC-TAAATTTACTGTGGGTCAAAATGAAACTACAATGGTGAATCTTATCTCTCTGAAG
1 CTATA-CCCTTAAAGTTACAGTGGGTCAGAATGAAATTACAATGGTGAATCTTATCTCTCTGAAG
* * *
50763658 TTGCAGTGGAGCAAGATGAAGATACAAATCCTATA-CCTCTGAAGTTGCAGTGGGTCAGATTGAA
65 TTGCAGTGGAGCAAGATGAAGATACAAATCCTATATCC-CTGAAGTTGTAGTGGATCAAATTGAA
50763722 G
129 G
50763723 CTACCATGGT
Statistics
Matches: 305, Mismatches: 50, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
231 7 0.02
232 287 0.94
233 11 0.04
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (232 bp):
CTATACCCTTAAAGTTACAGTGGGTCAGAATGAAATTACAATGGTGAATCTTATCTCTCTGAAGT
TGCAGTGGAGCAAGATGAAGATACAAATCCTATATCCCTGAAGTTGTAGTGGATCAAATTGAAGA
TACAATTCCTATACCCCTAAAGTTGCAATGGGTCAGAATGAAACTACAATGGCGAATCCTATCTC
CCTGAAGTTACAGTAGAGCAAGATAAAGCTACAAATA
Found at i:50763745 original size:94 final size:92
Alignment explanation
Indices: 50763486--50763772 Score: 317
Period size: 94 Copynumber: 3.1 Consensus size: 92
50763476 TGGATCAAAT
* * * * * * *
50763486 TGAAGATACAATTCCTATGCCCCTAAAGTTGCAATGGGTCAGAATGAAATTATAATGGCGAATCC
1 TGAAGATACAAATCCTAT-ACCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGGTGAATCT
* *
50763551 TATCTCCCTGAAGTTACAGTGGTGCAAGA
65 TATCTCTCTGAAGTT-CAGTGGAGCAAGA
* * * *
50763580 TGAA-ACTACAAATCCTATATCCCTAAATTTACTGTGGGTCAAAATGAAACTACAATGGTGAATC
1 TGAAGA-TACAAATCCTATA-CCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGGTGAATC
50763644 TTATCTCTCTGAAGTTGCAGTGGAGCAAGA
64 TTATCTCTCTGAAGTT-CAGTGGAGCAAGA
* * * *
50763674 TGAAGATACAAATCCTATACCTCTGAAGTTGCAGTGGGTCAGATTGAAGCTACCATGGTGAATCT
1 TGAAGATACAAATCCTATACC-CTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGGTGAATCT
* *
50763739 TATCTCTCT-AAGGATTCAATGGAGTAAGA
65 TATCTCTCTGAA-G-TTCAGTGGAGCAAGA
50763768 TGAAG
1 TGAAG
50763773 CCACAAATAT
Statistics
Matches: 163, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
93 5 0.03
94 155 0.95
95 3 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (92 bp):
TGAAGATACAAATCCTATACCCTAAAGTTGCAGTGGGTCAGAATGAAACTACAATGGTGAATCTT
ATCTCTCTGAAGTTCAGTGGAGCAAGA
Found at i:50763800 original size:94 final size:94
Alignment explanation
Indices: 50763511--50763865 Score: 267
Period size: 94 Copynumber: 3.8 Consensus size: 94
50763501 TATGCCCCTA
* * * * * * * * * *
50763511 AAGTTGCAATGGGTCAGAATGAAATTATAATGGCGAATCCTATCTCCCTGAAGTTACAGTGGTGC
1 AAGTTGCAGTGGGTCAAAATGAAACTACAATGGTGAATCTTATCTCTCTGAAGTTGCAATGGAGC
* *
50763576 AAGATGAA-ACTACAAATCCTATATCC-CTA
66 AAGATGAAGAC-ACAAATACTATA-CCTCTG
* * * *
50763605 AATTTACTGTGGGTCAAAATGAAACTACAATGGTGAATCTTATCTCTCTGAAGTTGCAGTGGAGC
1 AAGTTGCAGTGGGTCAAAATGAAACTACAATGGTGAATCTTATCTCTCTGAAGTTGCAATGGAGC
* *
50763670 AAGATGAAGATACAAATCCTATACCTCTG
66 AAGATGAAGACACAAATACTATACCTCTG
* * * *
50763699 AAGTTGCAGTGGGTCAGATTGAAGCTACCATGGTGAATCTTATCTCTCT-AAGGATT-CAATGGA
1 AAGTTGCAGTGGGTCAAAATGAAACTACAATGGTGAATCTTATCTCTCTGAA-G-TTGCAATGGA
* * *
50763762 GTAAGATGAAGCCACAAATATTATATCC-CTGG
64 GCAAGATGAAGACACAAATACTATA-CCTCT-G
* * * * ***** *
50763794 AA-TTGCAGTGGAAT-GAATTGAAATTACAACAACAAATCTTATCTC-CTTAAAGTTGCAATGGA
1 AAGTTGCAGTGG-GTCAAAATGAAACTACAATGGTGAATCTTATCTCTC-TGAAGTTGCAATGGA
50763856 GCAAGATGAA
64 GCAAGATGAA
50763866 ACTGTAACAC
Statistics
Matches: 212, Mismatches: 39, Indels: 20
0.78 0.14 0.07
Matches are distributed among these distances:
93 7 0.03
94 194 0.92
95 11 0.05
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (94 bp):
AAGTTGCAGTGGGTCAAAATGAAACTACAATGGTGAATCTTATCTCTCTGAAGTTGCAATGGAGC
AAGATGAAGACACAAATACTATACCTCTG
Found at i:50764978 original size:37 final size:37
Alignment explanation
Indices: 50764928--50765011 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 37
50764918 GGTCTAATAT
50764928 GACGTCATTTTGGGTTTGACTTCTAGACGCCCAAAAC
1 GACGTCATTTTGGGTTTGACTTCTAGACGCCCAAAAC
* *
50764965 GACGTCGTTTTGGGTTTGACTTCTAGACGCCCAAAAT
1 GACGTCATTTTGGGTTTGACTTCTAGACGCCCAAAAC
50765002 GACGTCATTT
1 GACGTCATTT
50765012 AAGGACCGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (37 bp):
GACGTCATTTTGGGTTTGACTTCTAGACGCCCAAAAC
Found at i:50766686 original size:13 final size:13
Alignment explanation
Indices: 50766668--50766693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50766658 TAAATCTAAC
50766668 ATTTTATTAAAAT
1 ATTTTATTAAAAT
50766681 ATTTTATTAAAAT
1 ATTTTATTAAAAT
50766694 GACAAAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTATTAAAAT
Found at i:50768341 original size:14 final size:14
Alignment explanation
Indices: 50768324--50768350 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50768314 TAATTTAGAA
50768324 AATTTAATTAATTT
1 AATTTAATTAATTT
50768338 AATTTAATTAATT
1 AATTTAATTAATT
50768351 AAAAAAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATTTAATTAATTT
Found at i:50783839 original size:27 final size:27
Alignment explanation
Indices: 50783802--50783998 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
50783792 TTAAGCATAC
50783802 AGTCATTTTATAACATAGGGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
* * *
50783829 AGTAATTTTATAACATAGTGGCATAAC
1 AGTCATTTTATAACATAGGGGCATAAT
*
50783856 AGTCATTTTATAACATAGGCGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
* * * *
50783883 AGTCA-TTT-TACCATTTGAAGGCATAAC
1 AGTCATTTTATAACA-TAG-GGGCATAAT
*
50783910 ATTCA-TTTATAACATAGGGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
** * *
50783936 AGTCATTTTACCACGTAAGGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
*
50783963 AGTCA-TTTATAACATAAGGGCATAAT
1 AGTCATTTTATAACATAGGGGCATAAT
50783989 AGTCATTTTA
1 AGTCATTTTA
50783999 CCACGTGAGG
Statistics
Matches: 140, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
25 4 0.03
26 39 0.28
27 93 0.66
28 4 0.03
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (27 bp):
AGTCATTTTATAACATAGGGGCATAAT
Found at i:50783939 original size:53 final size:53
Alignment explanation
Indices: 50783796--50784028 Score: 301
Period size: 53 Copynumber: 4.4 Consensus size: 53
50783786 ATAACATTAA
* ** * *
50783796 GCAT-ACAGTCATTTTATAACATAGGGGCATAATAGTAATTTTATAACATAGTG
1 GCATAACAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACCACGT-GAG
* **
50783849 GCATAACAGTCATTTTATAACATAGGCGCATAATAGTCATTTTACCATTTGAAG
1 GCATAACAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACCACGTG-AG
* *
50783903 GCATAACATTCA-TTTATAACATAGGGGCATAATAGTCATTTTACCACGTAAGG
1 GCATAACAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACCACGTGA-G
* *
50783956 GCATAATAGTCA-TTTATAACATAAGGGCATAATAGTCATTTTACCACGTGAG
1 GCATAACAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACCACGTGAG
50784008 GACATAACAGTCATTTTATAA
1 G-CATAACAGTCATTTTATAA
50784029 TAGTTTGGGG
Statistics
Matches: 158, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
52 3 0.02
53 97 0.61
54 58 0.37
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (53 bp):
GCATAACAGTCATTTTATAACATAGGGGCATAATAGTCATTTTACCACGTGAG
Found at i:50784013 original size:27 final size:27
Alignment explanation
Indices: 50783802--50784025 Score: 156
Period size: 27 Copynumber: 8.4 Consensus size: 27
50783792 TTAAGCATAC
** * *
50783802 AGTCATTTTATAACATAGGGGCATAAT
1 AGTCATTTTACCACGTAAGGGCATAAT
* ** * *
50783829 AGTAATTTTATAACAT-AGTGGCATAAC
1 AGTCATTTTACCACGTAAG-GGCATAAT
** *
50783856 AGTCATTTTATAACAT-AGGCGCATAAT
1 AGTCATTTTACCACGTAAGG-GCATAAT
** *
50783883 AGTCATTTTACCATTTGAA-GGCATAAC
1 AGTCATTTTACCACGT-AAGGGCATAAT
* * *
50783910 ATTCATTTATA--ACATAGGGGCATAAT
1 AGTCATTT-TACCACGTAAGGGCATAAT
50783936 AGTCATTTTACCACGTAAGGGCATAAT
1 AGTCATTTTACCACGTAAGGGCATAAT
*
50783963 AGTCATTTATA--ACATAAGGGCATAAT
1 AGTCATTT-TACCACGTAAGGGCATAAT
* * *
50783989 AGTCATTTTACCACGTGAGGACATAAC
1 AGTCATTTTACCACGTAAGGGCATAAT
50784016 AGTCATTTTA
1 AGTCATTTTA
50784026 TAATAGTTTG
Statistics
Matches: 163, Mismatches: 23, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
25 5 0.03
26 40 0.25
27 112 0.69
28 5 0.03
29 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.33
Consensus pattern (27 bp):
AGTCATTTTACCACGTAAGGGCATAAT
Found at i:50784014 original size:80 final size:77
Alignment explanation
Indices: 50783802--50784025 Score: 211
Period size: 80 Copynumber: 2.8 Consensus size: 77
50783792 TTAAGCATAC
* * *
50783802 AGTCATTTTATAACATAGGGGCATAATAGTAATTTTATAACATAGTGGCATAACAGTCATTTTAT
1 AGTCA-TTTATAACATAAGGGCATAATAGTCA-TTT-TAACATAG-GGCATAACAGTCATTTTAC
50783867 AACATAGGCGCATAAT
62 AACATAGGCGCATAAT
* * * *
50783883 AGTCATTT-TACCATTTGAA-GGCATAACATTCATTTATAACATAGGGGCATAATAGTCATTTTA
1 AGTCATTTATAACA--T-AAGGGCATAATAGTCATTT-TAACATA-GGGCATAACAGTCATTTTA
* *
50783946 CCACGTAAGG-GCATAAT
61 CAACAT-AGGCGCATAAT
* *
50783963 AGTCATTTATAACATAAGGGCATAATAGTCATTTTACCACGTGAGGACATAACAGTCATTTTA
1 AGTCATTTATAACATAAGGGCATAATAGTCATTTTA--ACAT-AGGGCATAACAGTCATTTTA
50784026 TAATAGTTTG
Statistics
Matches: 118, Mismatches: 15, Indels: 21
0.77 0.10 0.14
Matches are distributed among these distances:
78 4 0.03
79 19 0.16
80 69 0.58
81 25 0.21
82 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.33
Consensus pattern (77 bp):
AGTCATTTATAACATAAGGGCATAATAGTCATTTTAACATAGGGCATAACAGTCATTTTACAACA
TAGGCGCATAAT
Found at i:50789141 original size:21 final size:21
Alignment explanation
Indices: 50789115--50789154 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50789105 AAATTAGAAT
* *
50789115 ATAAAAATTAAATTAAAAACA
1 ATAAAAATAAAAATAAAAACA
50789136 ATAAAAATAAAAATAAAAA
1 ATAAAAATAAAAATAAAAA
50789155 ATGGCTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (21 bp):
ATAAAAATAAAAATAAAAACA
Done.