Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 169 of 228
Found at i:50794818 original size:27 final size:28
Alignment explanation
Indices: 50794778--50794894 Score: 136
Period size: 27 Copynumber: 4.3 Consensus size: 28
50794768 AATCATGGGA
*
50794778 AAAATGAC-CGAATTACCCTCGAAGGTT
1 AAAATGACTCGAATTACCCTCGAAGGGT
* *
50794805 AAAATGACTC-AATTACCCCCGACGGGT
1 AAAATGACTCGAATTACCCTCGAAGGGT
* *
50794832 AAAATGACT-AAATTACCCTCAAAGGGT
1 AAAATGACTCGAATTACCCTCGAAGGGT
*
50794859 AAAATGAC-CGAAATACCCTC-ATAGGGT
1 AAAATGACTCGAATTACCCTCGA-AGGGT
50794886 AAAATGACT
1 AAAATGACT
50794895 GTTGTACCCC
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
26 1 0.01
27 75 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (28 bp):
AAAATGACTCGAATTACCCTCGAAGGGT
Found at i:50795084 original size:27 final size:26
Alignment explanation
Indices: 50795054--50795113 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
50795044 TGTACTAGTG
*
50795054 GCTTTGCCACATATATTGTTGCTGGCA
1 GCTTTGCCACAT-TATTGTTACTGGCA
**
50795081 GCTTTGCTGCATTATTGTTACTGGCA
1 GCTTTGCCACATTATTGTTACTGGCA
*
50795107 GTTTTGC
1 GCTTTGC
50795114 TGCATCATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.15, C:0.20, G:0.23, T:0.42
Consensus pattern (26 bp):
GCTTTGCCACATTATTGTTACTGGCA
Found at i:50795099 original size:26 final size:26
Alignment explanation
Indices: 50795067--50795142 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
50795057 TTGCCACATA
50795067 TATTGTTGCTGGCAGCTTTGCTGCAT
1 TATTGTTGCTGGCAGCTTTGCTGCAT
* *
50795093 TATTGTTACTGGCAGTTTTGCTGCAT
1 TATTGTTGCTGGCAGCTTTGCTGCAT
* * *
50795119 CATTATTAG-TAGCAGCTTTGCTGC
1 TATTGTT-GCTGGCAGCTTTGCTGC
50795143 GATATTGGTG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (26 bp):
TATTGTTGCTGGCAGCTTTGCTGCAT
Found at i:50801135 original size:27 final size:27
Alignment explanation
Indices: 50801092--50801264 Score: 183
Period size: 27 Copynumber: 6.4 Consensus size: 27
50801082 TGCGAATCAT
*
50801092 GGGTAAAATGACTGAATTACCCTCGAA
1 GGGTAAAATGACCGAATTACCCTCGAA
* *
50801119 GGGTAAAACGATCGAATTACCCTCGAA
1 GGGTAAAATGACCGAATTACCCTCGAA
* *
50801146 GGGTAAAATGACCAAATTACCCCCGAA
1 GGGTAAAATGACCGAATTACCCTCGAA
* *
50801173 GGGTAAAATGGCCGAATTACCTTCGAA
1 GGGTAAAATGACCGAATTACCCTCGAA
* * *
50801200 GGGTAAAATGACTGAAATACCC-CCATA
1 GGGTAAAATGACCGAATTACCCTCGA-A
* *
50801227 GGGTAAAATAACC-ATAATACCC-C-ATA
1 GGGTAAAATGACCGA-ATTACCCTCGA-A
50801253 GGGTAAAATGAC
1 GGGTAAAATGAC
50801265 TATTATACCT
Statistics
Matches: 125, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.14
27 108 0.86
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAATTACCCTCGAA
Found at i:50801230 original size:81 final size:80
Alignment explanation
Indices: 50801092--50801264 Score: 210
Period size: 81 Copynumber: 2.1 Consensus size: 80
50801082 TGCGAATCAT
* * * *
50801092 GGGTAAAATGACTGAATTACCCTCGAAGGGTAAAACGATCGAATTACCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAATTACCCTCGAAGGGTAAAACGATCGAAATACCCTCCAAGGGTAAAATAA
50801157 CCA-AATTACCCCCGA-A
66 CCATAA-TA-CCCC-ATA
* * *
50801173 GGGTAAAATGGCCGAATTACCTTCGAAGGGTAAAATGA-CTGAAATACCC-CCATAGGGTAAAAT
1 GGGTAAAATGACCGAATTACCCTCGAAGGGTAAAACGATC-GAAATACCCTCCA-AGGGTAAAAT
50801236 AACCATAATACCCCATA
64 AACCATAATACCCCATA
50801253 GGGTAAAATGAC
1 GGGTAAAATGAC
50801265 TATTATACCT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
79 1 0.01
80 19 0.24
81 58 0.73
82 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (80 bp):
GGGTAAAATGACCGAATTACCCTCGAAGGGTAAAACGATCGAAATACCCTCCAAGGGTAAAATAA
CCATAATACCCCATA
Found at i:50801272 original size:26 final size:26
Alignment explanation
Indices: 50801199--50801273 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
50801189 TTACCTTCGA
50801199 AGGGTAAAATGACTGA-AATACCCCCAT
1 AGGGTAAAATGACT-ATAATA-CCCCAT
* *
50801226 AGGGTAAAATAACCATAATACCCCAT
1 AGGGTAAAATGACTATAATACCCCAT
*
50801252 AGGGTAAAATGACTATTATACC
1 AGGGTAAAATGACTATAATACC
50801274 TCTAGGAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 26 0.62
27 16 0.38
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (26 bp):
AGGGTAAAATGACTATAATACCCCAT
Found at i:50801468 original size:26 final size:26
Alignment explanation
Indices: 50801413--50801514 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 26
50801403 AGGGGAAGTA
** **
50801413 TACTG-TACTGGTGGCTTTGCCACAT
1 TACTGTTACTGGCAGCTTTGCTGCAT
* *
50801438 ATACTGGTACTGGCAGCTTTGGTGCAT
1 -TACTGTTACTGGCAGCTTTGCTGCAT
50801465 TACTGTTACTGGCAGCTTTGCTGCAT
1 TACTGTTACTGGCAGCTTTGCTGCAT
* * *
50801491 CACTATTACTGGTAGCTTTGCTGC
1 TACTGTTACTGGCAGCTTTGCTGC
50801515 GATATTGGTG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 50 0.77
27 15 0.23
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCAT
Found at i:50802166 original size:17 final size:17
Alignment explanation
Indices: 50802141--50802179 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
50802131 AACATTACTA
50802141 AAGAAGTTTCCAAACTT
1 AAGAAGTTTCCAAACTT
*
50802158 AAGAGGTTTCCAAACTT
1 AAGAAGTTTCCAAACTT
50802175 AAGAA
1 AAGAA
50802180 ACGAGTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (17 bp):
AAGAAGTTTCCAAACTT
Found at i:50824522 original size:99 final size:99
Alignment explanation
Indices: 50824349--50824533 Score: 248
Period size: 99 Copynumber: 1.9 Consensus size: 99
50824339 TAAATTATTG
** * * *
50824349 AATGTTAAATTGTTAAAATGTTTTTGATTGTAAAGTAATGCTCCGTAACTCTAATCTGATGACGA
1 AATGTTAAAAAGTTAAAATGTTTTTGATTGTAAAGTAATACTCCGTAACCCTAATCAGATGACGA
50824414 AGATGGGTTAGGGGTGTTACATTTATTGGTATCA
66 AGATGGGTTAGGGGTGTTACATTTATTGGTATCA
* * * *
50824448 AATGTTAAAAAGTTTAAATGTTTTTTATTGTAAGGTAATACTCTGTAACCCTAATTCAG-TGACG
1 AATGTTAAAAAGTTAAAATGTTTTTGATTGTAAAGTAATACTCCGTAACCCTAA-TCAGATGACG
*
50824512 GAGACT-GGTTAGGGGTGTTACA
65 AAGA-TGGGTTAGGGGTGTTACA
50824534 CCATTCACGA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
99 70 0.95
100 4 0.05
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (99 bp):
AATGTTAAAAAGTTAAAATGTTTTTGATTGTAAAGTAATACTCCGTAACCCTAATCAGATGACGA
AGATGGGTTAGGGGTGTTACATTTATTGGTATCA
Found at i:50826650 original size:18 final size:18
Alignment explanation
Indices: 50826629--50826667 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
50826619 TTATTTCTTA
50826629 TTTTCATTTTAGTTTGTT
1 TTTTCATTTTAGTTTGTT
** *
50826647 TTTTGTTTTTATTTTGTT
1 TTTTCATTTTAGTTTGTT
50826665 TTT
1 TTT
50826668 GTTTAGTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.03, G:0.10, T:0.79
Consensus pattern (18 bp):
TTTTCATTTTAGTTTGTT
Found at i:50826655 original size:17 final size:18
Alignment explanation
Indices: 50826635--50826671 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
50826625 CTTATTTTCA
50826635 TTTTAGTTTGTTTTTTGT
1 TTTTAGTTTGTTTTTTGT
*
50826653 TTTTATTTTG-TTTTTGT
1 TTTTAGTTTGTTTTTTGT
50826670 TT
1 TT
50826672 AGTTTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.05, C:0.00, G:0.14, T:0.81
Consensus pattern (18 bp):
TTTTAGTTTGTTTTTTGT
Found at i:50827897 original size:26 final size:26
Alignment explanation
Indices: 50827868--50827931 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
50827858 TCCTAATTGG
50827868 TTTTATTGATTTAAGTTGCTTGTTTA
1 TTTTATTGATTTAAGTTGCTTGTTTA
50827894 TTTTATTGATTTAAGTTGCTTGTTTA
1 TTTTATTGATTTAAGTTGCTTGTTTA
50827920 TTTTATTG-TTTA
1 TTTTATTGATTTA
50827932 TTTACTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.11
26 34 0.89
ACGTcount: A:0.19, C:0.03, G:0.14, T:0.64
Consensus pattern (26 bp):
TTTTATTGATTTAAGTTGCTTGTTTA
Found at i:50827930 original size:12 final size:12
Alignment explanation
Indices: 50827887--50827934 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
50827877 TTTAAGTTGC
50827887 TTGTTTATTTTA
1 TTGTTTATTTTA
* **
50827899 TTGATTTAAGTTGC
1 TTG-TTT-ATTTTA
50827913 TTGTTTATTTTA
1 TTGTTTATTTTA
50827925 TTGTTTATTT
1 TTGTTTATTT
50827935 ACTTTAATCA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 16 0.57
13 6 0.21
14 6 0.21
ACGTcount: A:0.17, C:0.02, G:0.12, T:0.69
Consensus pattern (12 bp):
TTGTTTATTTTA
Found at i:50831452 original size:39 final size:40
Alignment explanation
Indices: 50831408--50831495 Score: 160
Period size: 39 Copynumber: 2.2 Consensus size: 40
50831398 TAATATCCGG
50831408 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGA
1 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGA
*
50831447 AGGCATTTGTGCGAGATACTAATTCCGGGCTATGTCCCGA
1 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGA
50831487 AGGCATTTG
1 AGGCATTTG
50831496 AACGAGGAGC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 33 0.70
40 14 0.30
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCCGA
Found at i:50839319 original size:40 final size:40
Alignment explanation
Indices: 50839230--50839451 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
50839220 TTGAATGCTG
* *
50839230 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
50839269 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
50839309 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50839348 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50839388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
50839429 -CCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
50839452 CGAACGAGGA
Statistics
Matches: 162, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 53 0.33
40 99 0.61
41 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50839365 original size:79 final size:80
Alignment explanation
Indices: 50839230--50839451 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 80
50839220 TTGAATGCTG
* *
50839230 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
50839291 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* *
50839309 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
50839373 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * * *
50839388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTATAA-CCAGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
50839452 CGAACGAGGA
Statistics
Matches: 125, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
78 10 0.08
79 61 0.49
80 52 0.42
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:50839471 original size:80 final size:80
Alignment explanation
Indices: 50839230--50839485 Score: 199
Period size: 79 Copynumber: 3.2 Consensus size: 80
50839220 TTGAATGCTG
* * *
50839230 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCC-GGACTAAGAT-CCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAATTACTAA-ATCCAGG-CTAAG-TCCCGAAGGC
* ** *
50839290 ATTTGTGCGAGAT-ACTAAT
62 ATTCGAACGAG-TGACTAAA
* * * * * *
50839309 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTAAATCCAGGCTAAGTCCCGAAGGCATTC
** *
50839373 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
*
50839388 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTATAA-CCAGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTA-AATCCAGGCTAAGTCCCGAAGGCATT
*
50839452 CGAACGAG-GAGCTATA
65 CGAACGAGTGA-CTAAA
* *
50839468 TCC-GGTTAAATTCCGAAG
1 TCCGGGTTAAGTCCCGAAG
50839486 TTACGTGATT
Statistics
Matches: 151, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
78 11 0.07
79 72 0.48
80 66 0.44
81 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTAAATCCAGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:50854144 original size:10 final size:10
Alignment explanation
Indices: 50854129--50854158 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
50854119 GTAATTTTGA
50854129 TATTTAAAAT
1 TATTTAAAAT
*
50854139 TATTTAAAAA
1 TATTTAAAAT
50854149 TATTTAAAAT
1 TATTTAAAAT
50854159 CTATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTTAAAAT
Found at i:50854877 original size:26 final size:26
Alignment explanation
Indices: 50854844--50854905 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
50854834 ATAAAAAATA
*
50854844 ACCAAAATATTATAATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTATTT
50854870 ACCAAAATATTATAAATTTTTTATTT
1 ACCAAAATATTATAAATTTTTTATTT
50854896 ACCAAAATAT
1 ACCAAAATAT
50854906 ACAAAAAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.47
Consensus pattern (26 bp):
ACCAAAATATTATAAATTTTTTATTT
Found at i:50855790 original size:82 final size:82
Alignment explanation
Indices: 50855697--50855861 Score: 294
Period size: 82 Copynumber: 2.0 Consensus size: 82
50855687 TTAATTAAAA
50855697 TAGTCTAACATGTTTATGTTATAAATCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
1 TAGTCTAACATGTTTATGTTATAAATCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
50855762 TTTATGCTTCCATTATT
66 TTTATGCTTCCATTATT
* *
50855779 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATTTTAAATTTATAAATAGATAAAATAG
1 TAGTCTAACATGTTTATGTTATAAATCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
* *
50855844 TTTATGTTTCCGTTATT
66 TTTATGCTTCCATTATT
50855861 T
1 T
50855862 TTTTCCTTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (82 bp):
TAGTCTAACATGTTTATGTTATAAATCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
TTTATGCTTCCATTATT
Found at i:50855958 original size:19 final size:19
Alignment explanation
Indices: 50855936--50856001 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
50855926 TTTAATTTTT
50855936 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
50855955 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
50855973 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
50855992 TTAAATTAAA
1 TTAAATTAAA
50856002 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:50856483 original size:26 final size:27
Alignment explanation
Indices: 50856411--50856501 Score: 166
Period size: 27 Copynumber: 3.4 Consensus size: 27
50856401 TTTTTTTGGT
50856411 ATATTTTGGTAAATAAACAAAATTTATA
1 ATATTTTGGTAAATAAA-AAAATTTATA
50856439 ATATTTTGGTAAATAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAATTTATA
50856466 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAATTTATA
50856492 ATATTTTGGT
1 ATATTTTGGT
50856502 TATTTTTTAT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
26 15 0.24
27 31 0.49
28 17 0.27
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.42
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAATTTATA
Found at i:50858902 original size:21 final size:21
Alignment explanation
Indices: 50858877--50858917 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
50858867 ATTAATTGAA
50858877 ATCCAAATC-TAAATTTGAACT
1 ATCCAAA-CATAAATTTGAACT
50858898 ATCCAAACAATAAATTTGAA
1 ATCCAAAC-ATAAATTTGAA
50858918 TTAATTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (21 bp):
ATCCAAACATAAATTTGAACT
Found at i:50863683 original size:14 final size:15
Alignment explanation
Indices: 50863654--50863686 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
50863644 GGGGAAAACA
50863654 AAAATAAAACAAAAT
1 AAAATAAAACAAAAT
*
50863669 AAAAT-AAACAGAAT
1 AAAATAAAACAAAAT
50863683 AAAA
1 AAAA
50863687 ATAACATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAATAAAACAAAAT
Found at i:50863687 original size:15 final size:15
Alignment explanation
Indices: 50863648--50863690 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50863638 GATTTTGGGG
*
50863648 AAAACAAAAATAAAAC
1 AAAATAAAAAT-AAAC
50863664 AAAAT-AAAATAAAC
1 AAAATAAAAATAAAC
*
50863678 AGAATAAAAATAA
1 AAAATAAAAATAA
50863691 CATCATATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 8 0.33
15 12 0.50
16 4 0.17
ACGTcount: A:0.79, C:0.07, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAATAAAAATAAAC
Found at i:50865386 original size:27 final size:28
Alignment explanation
Indices: 50865335--50865387 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
50865325 ATACATATAA
* * *
50865335 ATGGTTGTTCACTCCCTTTTGTTGGTTC
1 ATGGATGTTCACTCCCTTGTATTGGTTC
50865363 ATGGATGTTCA-TCCCTTGTATTGGT
1 ATGGATGTTCACTCCCTTGTATTGGT
50865388 ATGTATTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (28 bp):
ATGGATGTTCACTCCCTTGTATTGGTTC
Found at i:50867234 original size:42 final size:42
Alignment explanation
Indices: 50867174--50867263 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
50867164 GGCTATCGGT
* * **
50867174 GCCACACGTCCAGGCACACGGGTGTGTGTTTAGGCCGTTTGA
1 GCCACATGGCCAGGCACACGGGTGTGTGTCAAGGCCGTTTGA
* *
50867216 TCCACATGGCCAGGCACACTGGTGTGTGTCAAGGCCGTTTGA
1 GCCACATGGCCAGGCACACGGGTGTGTGTCAAGGCCGTTTGA
50867258 GCCACA
1 GCCACA
50867264 CGGTCATATG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (42 bp):
GCCACATGGCCAGGCACACGGGTGTGTGTCAAGGCCGTTTGA
Found at i:50870263 original size:19 final size:19
Alignment explanation
Indices: 50870221--50870290 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
50870211 AATACTAACG
50870221 AAAAGAATAAGAATAATAAGAAT
1 AAAA-AATAAGAATAAT---AAT
50870244 AAAAAATAAGAATAATAAT
1 AAAAAATAAGAATAATAAT
** * *
50870263 AGTAAAT-AGAAAAATAAA
1 AAAAAATAAGAATAATAAT
50870281 AATAAAATAA
1 AA-AAAATAA
50870291 ATCAAACTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
18 10 0.26
19 12 0.31
20 1 0.03
22 12 0.31
23 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.19
Consensus pattern (19 bp):
AAAAAATAAGAATAATAAT
Found at i:50871549 original size:136 final size:135
Alignment explanation
Indices: 50871306--50871574 Score: 414
Period size: 136 Copynumber: 2.0 Consensus size: 135
50871296 ACAAGCTTAG
** ** * *
50871306 AAGCTTGTTGTTAGTTTGGCGTGGTGAAAGTTGGCATTGAGGGGGAGTGTTGAATATCAACACAA
1 AAGCTTGCCGTTAGTTTGGCAAGGTGAAAGTTGGCATTGAAGGGGAATGTTGAATATCAACACAA
50871371 CTTATTGAAAAATATATTTTGACAATGTTTATATTGTAAAAAGTTTAACTTTAG-TGAGTAGTTT
66 CTTATTGAAAAATATATTTTGACAATGTTTATATTGTAAAAAGTTTAA-TTTAGTTGAGTAGTTT
50871435 TTAGCT
130 TTAGCT
** *
50871441 AAGCTTGCCGTTAGTTTGGCAAGGTGAAAGTTGGTGTTGAAGGGGAATGTTGAATATTAACACCA
1 AAGCTTGCCGTTAGTTTGGCAAGGTGAAAGTTGGCATTGAAGGGGAATGTTGAATATCAACA-CA
* *
50871506 ACTTATTGAAAAATATATTTTGTCAATGTTTATATTGTAAAAAGTTTAATTTTGTTGAGTAGTTT
65 ACTTATTGAAAAATATATTTTGACAATGTTTATATTGTAAAAAGTTTAATTTAGTTGAGTAGTTT
50871571 TTAG
130 TTAG
50871575 GTACTAAGTT
Statistics
Matches: 121, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
135 57 0.47
136 64 0.53
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (135 bp):
AAGCTTGCCGTTAGTTTGGCAAGGTGAAAGTTGGCATTGAAGGGGAATGTTGAATATCAACACAA
CTTATTGAAAAATATATTTTGACAATGTTTATATTGTAAAAAGTTTAATTTAGTTGAGTAGTTTT
TAGCT
Found at i:50880936 original size:19 final size:20
Alignment explanation
Indices: 50880898--50880937 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
50880888 TTATAATTGC
**
50880898 TTTTATGATATTTTTTATTT
1 TTTTATGATATTTTAAATTT
50880918 TTTTATGA-ATTTTAAATTT
1 TTTTATGATATTTTAAATTT
50880937 T
1 T
50880938 GTAATGGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTATGATATTTTAAATTT
Found at i:50881457 original size:20 final size:20
Alignment explanation
Indices: 50881434--50881473 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50881424 CTATTCAAAC
*
50881434 AATATTACTTGAATAATTAT
1 AATATTACATGAATAATTAT
*
50881454 AATATTAGATGAATAATTAT
1 AATATTACATGAATAATTAT
50881474 GGGTCTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (20 bp):
AATATTACATGAATAATTAT
Found at i:50882067 original size:28 final size:28
Alignment explanation
Indices: 50882033--50882088 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
50882023 GTTAGGGACC
*
50882033 AAATTTTAAAAAATTAACAAATTTAGGG
1 AAATTTTAAAAAACTAACAAATTTAGGG
50882061 AAATTTTAAAAAACTAACAAATTTAGGG
1 AAATTTTAAAAAACTAACAAATTTAGGG
50882089 TTTAAATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (28 bp):
AAATTTTAAAAAACTAACAAATTTAGGG
Found at i:50882825 original size:11 final size:12
Alignment explanation
Indices: 50882762--50882826 Score: 77
Period size: 11 Copynumber: 5.8 Consensus size: 12
50882752 AACTAATCCT
50882762 CTCTCAAATTTC
1 CTCTCAAATTTC
50882774 CTCTC-AATTTC
1 CTCTCAAATTTC
*
50882785 CTCTC-AATTTG
1 CTCTCAAATTTC
50882796 CTCTCAAA-TTC
1 CTCTCAAATTTC
50882807 CT-TCCAAATTT-
1 CTCT-CAAATTTC
50882818 CTCTCAAAT
1 CTCTCAAAT
50882827 CCATAATTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
10 1 0.02
11 36 0.77
12 10 0.21
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.42
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:50884680 original size:18 final size:18
Alignment explanation
Indices: 50884653--50884692 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50884643 CAGGTGTGTT
* *
50884653 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
50884671 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
50884689 TCCT
1 TCCT
50884693 TTTCTGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:50885260 original size:22 final size:22
Alignment explanation
Indices: 50885235--50886110 Score: 981
Period size: 22 Copynumber: 40.0 Consensus size: 22
50885225 TTTAATTGAC
* *
50885235 AAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885257 AAACCCAACCCTAACCCTTAACTTAA
1 AAACCCTA----AACCCTTAACTTAA
* *
50885283 AAACCCT-AACTCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885304 AAACTCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
50885326 AAACCATAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
* *
50885348 AAA-CCTTAACCCTTAACTTCA
1 AAACCCTAAACCCTTAACTTAA
* *
50885369 ACACCCTAAACCCTTAGCTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
50885391 AAACCAT-AATCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885412 AAACTCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885434 AAACCCTAACCCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
50885456 AAACCTTAAACCTTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885478 AAACCTTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885500 AAACTCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
50885521 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885542 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
50885564 AAACCCTAACCCTAACCCTTAACTTAA
1 AAACCCT-A----AACCCTTAACTTAA
*
50885591 AAACCCT-AACCCTTAA-TTTA
1 AAACCCTAAACCCTTAACTTAA
* *
50885611 AAACCCTAACCCCTTAATTTAA
1 AAACCCTAAACCCTTAACTTAA
* * **
50885633 TAACCGTAAACCCTTAAAATAA
1 AAACCCTAAACCCTTAACTTAA
50885655 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * * *
50885677 AAA-CCTTAACCTTTACCTTCA
1 AAACCCTAAACCCTTAACTTAA
* * *
50885698 AAACCCTAACCCCTTACCTTCA
1 AAACCCTAAACCCTTAACTTAA
* *
50885720 AAACCATAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885742 AAACCCTAACCCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
50885764 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
50885786 AAACCCT-AACCTCTTAACTTAA
1 AAACCCTAAACC-CTTAACTTAA
** *
50885808 AAACTATAAACCCTCAACTTAA
1 AAACCCTAAACCCTTAACTTAA
50885830 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885851 AAACCTTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885873 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885895 AAACCCTAACCCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885917 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
50885939 AAACCATAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
50885961 AAATCCT-AACCCTTAAATTTA
1 AAACCCTAAACCCTTAACTTAA
* *
50885982 AAACCTTAAACTCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
50886004 AAATCGT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
50886025 AAACACTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
** * *
50886047 AAACTGT-AACCCTTAAATAAA
1 AAACCCTAAACCCTTAACTTAA
* *
50886068 AAACCGT-AACACTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
50886089 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
50886110 A
1 A
50886111 TATAATTTGA
Statistics
Matches: 723, Mismatches: 110, Indels: 43
0.83 0.13 0.05
Matches are distributed among these distances:
20 10 0.01
21 231 0.32
22 438 0.61
23 5 0.01
26 19 0.03
27 20 0.03
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (22 bp):
AAACCCTAAACCCTTAACTTAA
Found at i:50885323 original size:43 final size:44
Alignment explanation
Indices: 50885235--50886110 Score: 981
Period size: 43 Copynumber: 20.0 Consensus size: 44
50885225 TTTAATTGAC
* * *
50885235 AAACCTTAAACCCTTAACCTAAAAACCCAACCCTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTA----AACCCTTAACTTAA
* * *
50885283 AAACCCT-AACTCTTAAATTAAAAACTCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * *
50885326 AAACCATAAACCCTTAACCTAAAAA-CCTTAACCCTTAACTTCA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * * *
50885369 ACACCCTAAACCCTTAGCTTAAAAACCAT-AATCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
50885412 AAACTCTAAACCCTTAACTTAAAAACCCTAACCCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * *
50885456 AAACCTTAAACCTTTAAATTAAAAACCTTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
*
50885500 AAACTCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
*
50885542 AAACCCTAAACCCTTAAATTAAAAACCCTAACCCTAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCT-A----AACCCTTAACTTAA
* * *
50885591 AAACCCT-AACCCTTAA-TTTAAAACCCTAACCCCTTAATTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * **
50885633 TAACCGTAAACCCTTAAAATAAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * * * * *
50885677 AAA-CCTTAACCTTTACCTTCAAAACCCTAACCCCTTACCTTCA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * *
50885720 AAACCATAAACCCTTAAATTAAAAACCCTAACCCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
50885764 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCTCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACC-CTTAACTTAA
** *
50885808 AAACTATAAACCCTCAACTTAAAAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
50885851 AAACCTTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
50885895 AAACCCTAACCCCTTAACTTAAAAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * *
50885939 AAACCATAAACCCTTAACTTAAAAATCCT-AACCCTTAAATTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * * * *
50885982 AAACCTTAAACTCTTAACTTAAAAATCGT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* * ** * *
50886025 AAACACTAAACCCTTAAATTAAAAACTGT-AACCCTTAAATAAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
* *
50886068 AAACCGT-AACACTTAACTTAAAAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
50886110 A
1 A
50886111 TATAATTTGA
Statistics
Matches: 709, Mismatches: 104, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
42 67 0.09
43 304 0.43
44 274 0.39
46 1 0.00
47 27 0.04
48 15 0.02
49 21 0.03
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (44 bp):
AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
Found at i:50885363 original size:65 final size:65
Alignment explanation
Indices: 50885235--50886110 Score: 946
Period size: 65 Copynumber: 13.4 Consensus size: 65
50885225 TTTAATTGAC
* * * * * *
50885235 AAACCTTAAACCCTTAACCTAAAAACCCAACCCTAACCCTTAACTTAAAAACCCTAACTCTTAAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTA----AACCCTTAACTTAAAAACCTTAACCCTTAAC
50885300 TTAA
62 TTAA
* * * *
50885304 AAACTCTAAACCCTTAACTTAAAAACCATAAACCCTTAACCTAAAAACCTTAACCCTTAACTTCA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAACCCTTAACTTAA
* * * * * *
50885369 ACACCCTAAACCCTTAGCTTAAAAACCAT-AATCCTTAACCTAAAAACTCTAAACCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAAC-CTTAACCCTTAACTTA
50885433 A
65 A
* * * *
50885434 AAACCCTAACCCCTTAACTTAAAAACCTTAAACCTTTAAATTAAAAACCTTAAACCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTT-AACCCTTAACTTA
50885499 A
65 A
* * *
50885500 AAACTCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAATTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAA-CCTTAACCCTTAACTTA
50885563 A
65 A
* *
50885564 AAACCCTAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAA-TTTAAAACCCTAACCCCTTA
1 AAACCCT-A----AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAA-CCCTTA
*
50885627 ATTTAA
60 ACTTAA
* * ** * * *
50885633 TAACCGTAAACCCTTAAAATAAAAACCCTAAACCCTTAACTTAAAAACCTTAACCTTTACCTTCA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAACCCTTAACTTAA
* * * * * *
50885698 AAACCCTAACCCCTTACCTTCAAAACCATAAACCCTTAAATTAAAAACCCTAACCCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAA-CCCTTAACTTA
50885763 A
65 A
*
50885764 AAACCCTAAACCCTTAACTTAAAAACCCT-AACCTCTTAACTTAAAAA-CTATAAACCCTCAACT
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACC-CTTAACTTAAAAACCT-T-AACCCTTAACT
50885827 TAA
63 TAA
* * *
50885830 AAACCCT-AACCCTTAACTTAAAAACCTTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAA-CCTTAACCCTTAACTTA
50885894 A
65 A
* * *
50885895 AAACCCTAACCCCTTAACTTAAAAACCCTAAACCCTTAAATTAAAAACCATAAACCCTTAACTTA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACC-TTAACCCTTAACTTA
50885960 A
65 A
* * * * * * * *
50885961 AAATCCT-AACCCTTAAATTTAAAACCTTAAACTCTTAACTTAAAAATCGTAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAACCCTTAACTTAA
* * ** * * * *
50886025 AAACACTAAACCCTTAAATTAAAAACTGT-AACCCTTAAATAAAAAACCGTAACACTTAACTTAA
1 AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAACCCTTAACTTAA
50886089 AAACCCT-AACCCTTAACTTAAA
1 AAACCCTAAACCCTTAACTTAAA
50886111 TATAATTTGA
Statistics
Matches: 685, Mismatches: 99, Indels: 52
0.82 0.12 0.06
Matches are distributed among these distances:
63 14 0.02
64 123 0.18
65 291 0.42
66 171 0.25
67 4 0.01
68 5 0.01
69 47 0.07
70 30 0.04
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (65 bp):
AAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCTTAACCCTTAACTTAA
Found at i:50885580 original size:27 final size:27
Alignment explanation
Indices: 50885522--50885603 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
50885512 TTAACTTAAA
50885522 AACCCTAACCCTTAACTTAAAAACCCT
1 AACCCTAACCCTTAACTTAAAAACCCT
*
50885549 -A----AACCCTTAAATTAAAAACCCT
1 AACCCTAACCCTTAACTTAAAAACCCT
50885571 AACCCTAACCCTTAACTTAAAAACCCT
1 AACCCTAACCCTTAACTTAAAAACCCT
50885598 AACCCT
1 AACCCT
50885604 TAATTTAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
22 20 0.42
23 1 0.02
26 1 0.02
27 26 0.54
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (27 bp):
AACCCTAACCCTTAACTTAAAAACCCT
Found at i:50885624 original size:27 final size:26
Alignment explanation
Indices: 50885543--50885622 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 26
50885533 TTAACTTAAA
*
50885543 AACCCTAAACCCTTAAATTAAAAACCCT
1 AACCCT-AACCCTT-AATTTAAAACCCT
*
50885571 AACCCTAACCCTTAACTT-AAA----
1 AACCCTAACCCTTAATTTAAAACCCT
50885592 AACCCTAACCCTTAATTTAAAACCCT
1 AACCCTAACCCTTAATTTAAAACCCT
50885618 AACCC
1 AACCC
50885623 CTTAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
21 17 0.39
22 3 0.07
25 3 0.07
26 8 0.18
27 7 0.16
28 6 0.14
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (26 bp):
AACCCTAACCCTTAATTTAAAACCCT
Found at i:50892252 original size:59 final size:59
Alignment explanation
Indices: 50892185--50892299 Score: 194
Period size: 59 Copynumber: 1.9 Consensus size: 59
50892175 CAATTCCCGA
*
50892185 GGCTTTCCTTGGGTCCATTTGATTGAATGCTTCCCTTATTCCATGGTCCATAAACTTAG
1 GGCTTTCCTTGGGTCCATTTGATTGAATGCTTCCCTAATTCCATGGTCCATAAACTTAG
* * *
50892244 GGCTTTCCTTGGGTCCATTTGATTGAATGGTTCCCTAATTTCATGGTCCGTAAACT
1 GGCTTTCCTTGGGTCCATTTGATTGAATGCTTCCCTAATTCCATGGTCCATAAACT
50892300 CCTTCAACAG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (59 bp):
GGCTTTCCTTGGGTCCATTTGATTGAATGCTTCCCTAATTCCATGGTCCATAAACTTAG
Found at i:50893301 original size:19 final size:19
Alignment explanation
Indices: 50893277--50893314 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
50893267 GCGTTCTCGT
50893277 ATGAAGAAATATAGGTAAA
1 ATGAAGAAATATAGGTAAA
*
50893296 ATGAAGAATTATAGGTAAA
1 ATGAAGAAATATAGGTAAA
50893315 CTCCTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (19 bp):
ATGAAGAAATATAGGTAAA
Found at i:50897039 original size:33 final size:33
Alignment explanation
Indices: 50896993--50897059 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
50896983 ATTGCCTATT
* *
50896993 ACCATGTGGAGGCCCAAAACCATCATTTAAACC
1 ACCATGTGGAGGCCCAAAACCACCATTGAAACC
*
50897026 ACCATGTGTAGGCCCAAAACCACCATTGAAACC
1 ACCATGTGGAGGCCCAAAACCACCATTGAAACC
50897059 A
1 A
50897060 TTATTAACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.31, G:0.15, T:0.16
Consensus pattern (33 bp):
ACCATGTGGAGGCCCAAAACCACCATTGAAACC
Found at i:50898333 original size:19 final size:19
Alignment explanation
Indices: 50898309--50898346 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
50898299 GACTGATACC
50898309 ATGAAGAAATATAGGTAAA
1 ATGAAGAAATATAGGTAAA
*
50898328 ATGAAGAATTATAGGTAAA
1 ATGAAGAAATATAGGTAAA
50898347 CTCCTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (19 bp):
ATGAAGAAATATAGGTAAA
Found at i:50908557 original size:2 final size:2
Alignment explanation
Indices: 50908550--50908588 Score: 62
Period size: 2 Copynumber: 19.5 Consensus size: 2
50908540 AGAATATAAA
50908550 AT AT AT AT AT AT A- AGT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT A
50908589 AAACAAAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 33 0.94
3 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:50910458 original size:44 final size:43
Alignment explanation
Indices: 50910387--50910811 Score: 206
Period size: 44 Copynumber: 10.0 Consensus size: 43
50910377 ACTCGACGCG
* * *
50910387 ATCTGCTCAATTACTGCTTAGGGAGATAAGATCTATTGTTTTA
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTATTGTTTTA
* * *
50910430 ATCCGCTCCACTGCAGCTTTAGGGAGATAGGAT-TGATT-TCTTCT-
1 ATCTGCTCCACTACAGC-TTAGGGAGATAAGATCT-ATTGT-TT-TA
* * * * **
50910474 GTCTGCTCCACTACTGCTTACGGAGATAAGACTCGA-TG---CG
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGA-TCTATTGTTTTA
50910514 ATCTGCTCCACTACTA-CTTAGGGAGATAAGATCTATTGTTTTA
1 ATCTGCTCCACTAC-AGCTTAGGGAGATAAGATCTATTGTTTTA
* * * *
50910557 ATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGATT-TCTTCT-
1 ATCTGCTCCACTACAGCTT-AGGGAGATAAGATCT-ATTGT-TT-TA
* * * **
50910601 GTCTGCTCCACTACTGCTTAGGGAGATAAGA-CTAAATG---CG
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCT-ATTGTTTTA
* * * *
50910641 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTAA
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTATTGTTTTA
* * * * * *
50910684 ATCTACTCCACTGCAACTTTAGGGAGATAGGAT-TGGTT-TCTTTT
1 ATCTGCTCCACTACAGC-TTAGGGAGATAAGATCT-ATTGT-TTTA
* * * * ***
50910728 GTCTGCTCCACTACTGCTTAGGGAGATAAGA-C--TGGATGCG
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTATTGTTTTA
** * *
50910768 ATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTATTGTTTTA
50910811 A
1 A
50910812 ATTCGTTTCC
Statistics
Matches: 286, Mismatches: 63, Indels: 66
0.69 0.15 0.16
Matches are distributed among these distances:
39 3 0.01
40 91 0.32
41 3 0.01
42 1 0.00
43 91 0.32
44 95 0.33
45 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (43 bp):
ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTATTGTTTTA
Found at i:50910499 original size:87 final size:85
Alignment explanation
Indices: 50910388--50910758 Score: 255
Period size: 87 Copynumber: 4.4 Consensus size: 85
50910378 CTCGACGCGA
* * * *
50910388 TCTGCTCAATTACTGCTTAGGGAGATAAGATCTATTGTTTTAATCCGCTCCACTGCAGCTTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTAATCTGCTCCACTACAGC-TTAGG
*
50910453 GAGATAGGATTGATTTCTTCTG
65 GAGATAAGATT-ATTTCTTCTG
* * **
50910475 TCTGCTCCACTACTGCTTACGGAGATAAGACTCGA-TG---CGATCTGCTCCACTACTA-CTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTATTGTTTTAATCTGCTCCACTAC-AGCTTAG
*
50910535 GGAGATAAGATCTATTGT-TT-TAA
64 GGAGATAAGAT-TATT-TCTTCT-G
* * ** * * *
50910558 TCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGATT-TCTTCT-GTCTGCTCCACTACTGCTT
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATCT-ATTGT-TT-TAATCTGCTCCACTACAGCTT
* ** *
50910620 AGGGAGATAAGACTA--AATGC-G
62 AGGGAGATAAGATTATTTCTTCTG
* * * * * *
50910641 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTAAATCTACTCCACTGCAACTTTAG
1 -TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTAATCTGCTCCACTACAGC-TTAG
* * *
50910706 GGAGATAGGATTGGTTTCTTTTG
64 GGAGATAAGATT-ATTTCTTCTG
50910729 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
50910759 CTGGATGCGA
Statistics
Matches: 215, Mismatches: 44, Indels: 50
0.70 0.14 0.16
Matches are distributed among these distances:
82 1 0.00
83 62 0.29
84 57 0.27
85 1 0.00
86 2 0.01
87 88 0.41
88 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.33
Consensus pattern (85 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTATTGTTTTAATCTGCTCCACTACAGCTTAGGG
AGATAAGATTATTTCTTCTG
Found at i:50910534 original size:127 final size:127
Alignment explanation
Indices: 50910301--50910811 Score: 704
Period size: 127 Copynumber: 4.0 Consensus size: 127
50910291 TATCGACTTC
* * * * * * * * *
50910301 AATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCTTTC-TCAGTCTACACCACT-GTGACT
1 AATCCGCTCCACTGCAACTTTAGGGAGATAGGA-TTGATTTCTTCTGTCTGCTCCACTACTG-CT
* * * *
50910364 TCAAGGG-GATAAGACTCGACGCGATCTGCTCAATTACTGCTTAGGGAGATAAGATCTATTGTTT
64 T--AGGGAGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATGGTTT
50910428 T
127 T
*
50910429 AATCCGCTCCACTGCAGCTTTAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
1 AATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
* * *
50910494 CGGAGATAAGACTCGATGCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTATTGTTTT
66 GGGAGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATGGTTTT
*
50910556 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
1 AATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
** * *
50910621 GGGAGATAAGACTAAATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTA
66 GGGAGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATGGTTTT
** * *
50910683 AATCTACTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTTTGTCTGCTCCACTACTGCTTA
1 AATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
* * *
50910748 GGGAGATAAGACTGGATGCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTGGTTTT
66 GGGAGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATGGTTTT
50910810 AA
1 AA
50910812 ATTCGTTTCC
Statistics
Matches: 347, Mismatches: 33, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
126 3 0.01
127 299 0.86
128 43 0.12
129 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (127 bp):
AATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
GGGAGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATGGTTTT
Found at i:50910650 original size:40 final size:40
Alignment explanation
Indices: 50910602--50910798 Score: 180
Period size: 40 Copynumber: 4.8 Consensus size: 40
50910592 ATTTCTTCTG
**
50910602 TCTGCTCCACTACTGCTTAGGGAGATAAGACTAAATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGA
* ***
50910642 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C--TGGATGCGA
* * ** * * * *
50910685 TCTACTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTTTG-
1 TCTGCTCCACTACTGC-TTAGGGAGATAAGACTGGATGC----GA
50910729 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGA
*
50910769 TCTGCTCCACTATTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
50910799 TCTGTGGTTT
Statistics
Matches: 125, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
39 1 0.01
40 59 0.47
41 7 0.06
43 33 0.26
44 25 0.20
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGA
Found at i:50912133 original size:13 final size:13
Alignment explanation
Indices: 50912115--50912160 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
50912105 TTAGCCTCTC
50912115 CATTTTCATTTTT
1 CATTTTCATTTTT
50912128 CATTTTTCATTTTT
1 CA-TTTTCATTTTT
*
50912142 CATTCTCATTTTT
1 CATTTTCATTTTT
50912155 CATTTT
1 CATTTT
50912161 TCGTTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.57
14 13 0.43
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (13 bp):
CATTTTCATTTTT
Found at i:50912145 original size:27 final size:27
Alignment explanation
Indices: 50912115--50912168 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
50912105 TTAGCCTCTC
*
50912115 CATTTTCATTTTTCATTTTTCATTTTT
1 CATTCTCATTTTTCATTTTTCATTTTT
*
50912142 CATTCTCATTTTTCATTTTTCGTTTTT
1 CATTCTCATTTTTCATTTTTCATTTTT
50912169 TTCATTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.13, C:0.17, G:0.02, T:0.69
Consensus pattern (27 bp):
CATTCTCATTTTTCATTTTTCATTTTT
Found at i:50912177 original size:7 final size:7
Alignment explanation
Indices: 50912117--50912168 Score: 79
Period size: 7 Copynumber: 7.6 Consensus size: 7
50912107 AGCCTCTCCA
50912117 TTTTCAT
1 TTTTCAT
50912124 TTTTCAT
1 TTTTCAT
50912131 TTTTCAT
1 TTTTCAT
50912138 TTTTCA-
1 TTTTCAT
*
50912144 TTCTCAT
1 TTTTCAT
50912151 TTTTCAT
1 TTTTCAT
*
50912158 TTTTCGT
1 TTTTCAT
50912165 TTTT
1 TTTT
50912169 TTCATTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
6 5 0.12
7 36 0.88
ACGTcount: A:0.12, C:0.15, G:0.02, T:0.71
Consensus pattern (7 bp):
TTTTCAT
Found at i:50912516 original size:45 final size:45
Alignment explanation
Indices: 50912448--50912555 Score: 198
Period size: 45 Copynumber: 2.4 Consensus size: 45
50912438 AAATTTGAGT
*
50912448 CGCCCTTTTCGGGTTTTCAACTCAAAACCACCTTTGGTCACAAAG
1 CGCCCTTTTTGGGTTTTCAACTCAAAACCACCTTTGGTCACAAAG
*
50912493 CGCCCTTTTTGGGTTTTCGACTCAAAACCACCTTTGGTCACAAAG
1 CGCCCTTTTTGGGTTTTCAACTCAAAACCACCTTTGGTCACAAAG
50912538 CGCCCTTTTTGGGTTTTC
1 CGCCCTTTTTGGGTTTTC
50912556 CCCTTGGCCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (45 bp):
CGCCCTTTTTGGGTTTTCAACTCAAAACCACCTTTGGTCACAAAG
Found at i:50912622 original size:30 final size:30
Alignment explanation
Indices: 50912588--50912644 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50912578 TCTTTTTCTC
50912588 TTTTCATATTTT-ATTTTGACTTTGATTGAT
1 TTTTC-TATTTTGATTTTGACTTTGATTGAT
* *
50912618 TTTTCTTTTTTGCTTTTGACTTTGATT
1 TTTTCTATTTTGATTTTGACTTTGATT
50912645 TTTTTTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.14, C:0.09, G:0.11, T:0.67
Consensus pattern (30 bp):
TTTTCTATTTTGATTTTGACTTTGATTGAT
Found at i:50922672 original size:194 final size:194
Alignment explanation
Indices: 50922338--50922723 Score: 646
Period size: 194 Copynumber: 2.0 Consensus size: 194
50922328 ACTATATCAA
* * * *
50922338 ACCCTATCCAAACAACTAATAGGGAAATCAATGTTTCGATTACATTATATAACCAACTTTCACAT
1 ACCCAATCCAAACAACTAATAGGGAAATCAATGTTTCGATTACATCATACAACCAACTTGCACAT
* * *
50922403 CATCATTATGAATTCACATCTATAAAACCAATACCATATTGCATAGTTCAAACCATTTTCATACC
66 CACCATTATCAATTCACATCTATAAAACCAATACCACATTGCATAGTTCAAACCATTTTCATACC
*
50922468 ACGTATCATGTATCAATTGAATCATGTTATTTTATATTTTATTCAATTTAGCCCACTATCTTTG
131 ACATATCATGTATCAATTGAATCATGTTATTTTATATTTTATTCAATTTAGCCCACTATCTTTG
* * *
50922532 ACCCAATCCAAACAACTAATAGGGTAATCAATGTTTCGATTACATCATACAACCAAGTTGCATAT
1 ACCCAATCCAAACAACTAATAGGGAAATCAATGTTTCGATTACATCATACAACCAACTTGCACAT
*
50922597 CACCATTATCAGTTCACATCTATAAAACCAATACCACATTGCATAGTTCAAACCATTTTCATACC
66 CACCATTATCAATTCACATCTATAAAACCAATACCACATTGCATAGTTCAAACCATTTTCATACC
* *
50922662 ACATATCATGTATCAATTGAATCATGTTATTTTCTATTTTATTCAATTTAGTCCACTATCTT
131 ACATATCATGTATCAATTGAATCATGTTATTTTATATTTTATTCAATTTAGCCCACTATCTT
50922724 GATATTCAAT
Statistics
Matches: 178, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
194 178 1.00
ACGTcount: A:0.35, C:0.22, G:0.07, T:0.35
Consensus pattern (194 bp):
ACCCAATCCAAACAACTAATAGGGAAATCAATGTTTCGATTACATCATACAACCAACTTGCACAT
CACCATTATCAATTCACATCTATAAAACCAATACCACATTGCATAGTTCAAACCATTTTCATACC
ACATATCATGTATCAATTGAATCATGTTATTTTATATTTTATTCAATTTAGCCCACTATCTTTG
Found at i:50924695 original size:2 final size:2
Alignment explanation
Indices: 50924684--50924748 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
50924674 ATATGAAAAA
*
50924684 TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
50924726 TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG T
50924749 AATTGAATGC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.02, C:0.00, G:0.48, T:0.51
Consensus pattern (2 bp):
TG
Found at i:50935498 original size:31 final size:31
Alignment explanation
Indices: 50935460--50935526 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
50935450 TAGTACGATG
*
50935460 AATAAATAGAAAGATTGTGGTAATATATACT
1 AATAAATAGAAAGATTATGGTAATATATACT
* *
50935491 AATAAATAGCAAGATTATGGTAATCTATACT
1 AATAAATAGAAAGATTATGGTAATATATACT
*
50935522 CATAA
1 AATAA
50935527 TAATAAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.31
Consensus pattern (31 bp):
AATAAATAGAAAGATTATGGTAATATATACT
Found at i:50940019 original size:85 final size:85
Alignment explanation
Indices: 50939871--50940096 Score: 258
Period size: 85 Copynumber: 2.6 Consensus size: 85
50939861 ACGGTGTTTT
* * * *
50939871 TAGCGGCGTTTGTAATCAAAGCGTCACTAAAGGTCTTTGACCTATAACGGCGTTTGTGAGAAAAG
1 TAGCGGCGTTTGTAAT-AAAGCGTCGCTAAAGGTC-ATGATCTATAGCGGCGTTTGTGAGAAAAG
* * * *
50939936 CGCTGCTAAAGGTCTTGAGCTA
64 CGCCGCTAAAGGTCCTAACCTA
* * *
50939958 TAGCGGCGTTTGT-ATAGAAGCGTCGCTATAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTAATA-AAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGAGAAAAGC
50940022 GCCGCTAAAGGTCCTAACCTA
65 GCCGCTAAAGGTCCTAACCTA
* * * *
50940043 TAGCGGCGTTTGTGGGA-AAAGCGCCGCTAAAGGTCATGGTCCATAGCGGCGTTT
1 TAGCGGCGTTTGT--AATAAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTT
50940097 ATTTCTAAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
85 57 0.47
86 48 0.40
87 14 0.12
88 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (85 bp):
TAGCGGCGTTTGTAATAAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGAGAAAAGCG
CCGCTAAAGGTCCTAACCTA
Found at i:50940035 original size:43 final size:43
Alignment explanation
Indices: 50939871--50940096 Score: 240
Period size: 43 Copynumber: 5.3 Consensus size: 43
50939861 ACGGTGTTTT
* ** * * *
50939871 TAGCGGCGTTTGTAATCAAAGCGTCACTAAAGGTCTTTGACCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTC-CTGACCTA
* * * *
50939915 TAACGGCGTTTGTGAGAAAAGCGCTGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGACCTA
* * * * *
50939958 TAGCGGCGTTTGT-ATAGAAGCGTCGCTATAGGTCCTGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGACCTA
* *
50940000 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTAACCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGACCTA
* * *
50940043 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCC-A
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCT-GACCTA
50940086 TAGCGGCGTTT
1 TAGCGGCGTTT
50940097 ATTTCTAAAA
Statistics
Matches: 154, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
42 35 0.23
43 89 0.58
44 30 0.19
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCCTGACCTA
Found at i:50947802 original size:34 final size:34
Alignment explanation
Indices: 50947758--50947825 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
50947748 GCACAGTTGA
* *
50947758 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
* *
50947793 ACAGT-TTGGGTCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
50947826 TCAAAAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.31
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:50956121 original size:13 final size:12
Alignment explanation
Indices: 50956103--50956133 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
50956093 TTTAATACTA
50956103 TAATATATTATTT
1 TAATATATTA-TT
50956116 TAATATATTATT
1 TAATATATTATT
50956128 TAATAT
1 TAATAT
50956134 TACTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TAATATATTATT
Found at i:50956186 original size:20 final size:20
Alignment explanation
Indices: 50956156--50956194 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
50956146 TTGTATTATT
50956156 TTTTAAAATAATAATTTTAAA
1 TTTTAAAATAAT-ATTTTAAA
50956177 TTTT-AAATAATATTTTAA
1 TTTTAAAATAATATTTTAA
50956195 TGTATTGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 7 0.39
21 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTAAAATAATATTTTAAA
Found at i:50956302 original size:20 final size:19
Alignment explanation
Indices: 50956254--50956304 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
50956244 TTGCACACCT
50956254 AAAATAA-TATATTATTGA
1 AAAATAATTATATTATTGA
* *
50956272 AAAATATTTATATTATTTTA
1 AAAATAATTATATTA-TTGA
*
50956292 ATAATAATTATAT
1 AAAATAATTATAT
50956305 ATTAAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 6 0.22
19 7 0.26
20 14 0.52
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
AAAATAATTATATTATTGA
Found at i:50956307 original size:19 final size:21
Alignment explanation
Indices: 50956260--50956308 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
50956250 ACCTAAAATA
50956260 ATATATTATTGAAAAAT-ATT
1 ATATATTATTGAAAAATAATT
* *
50956280 -TATATTATTTTAATAATAATT
1 ATATATTA-TTGAAAAATAATT
50956301 ATATATTA
1 ATATATTA
50956309 AAATTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 7 0.29
20 7 0.29
21 3 0.12
22 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATATATTATTGAAAAATAATT
Found at i:50963411 original size:13 final size:13
Alignment explanation
Indices: 50963393--50963418 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50963383 TCTAAATCAG
50963393 AATTATTTTTGAA
1 AATTATTTTTGAA
50963406 AATTATTTTTGAA
1 AATTATTTTTGAA
50963419 CTCAAAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
AATTATTTTTGAA
Found at i:50966611 original size:47 final size:45
Alignment explanation
Indices: 50966560--50966727 Score: 150
Period size: 47 Copynumber: 3.6 Consensus size: 45
50966550 TATTTAATAT
50966560 TAATTATTTTAAATTGTATAAATTCATATAAGAAAATTTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
50966607 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* *
50966651 TAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
50966698 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
50966728 TTTTAATTAA
Statistics
Matches: 97, Mismatches: 11, Indels: 26
0.72 0.08 0.19
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
44 14 0.14
45 12 0.12
46 10 0.10
47 36 0.37
48 9 0.09
49 6 0.06
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:50966633 original size:91 final size:91
Alignment explanation
Indices: 50966486--50966693 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
50966476 TTGATTTTAG
* *
50966486 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
50966551 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* *
50966578 TAAATTCATATAAGAAAATTTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
50966643 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
*
50966669 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
50966694 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:50966653 original size:44 final size:43
Alignment explanation
Indices: 50966507--50966668 Score: 125
Period size: 44 Copynumber: 3.6 Consensus size: 43
50966497 AAGAACATTT
* * *
50966507 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATTATTATTAAATTA
* * * **
50966550 TATTTAATATTAATTATTTTAAATTGTATAAATTCATATAAGAAAATT-
1 TA-TTAATAATAATTATTTGAAA-T-TATATATT-AT-T-ATTAAATTA
50966598 TATT-ATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTAAT-AATAATTATT-TGAAATTATATATTATTATTAAATTA
*
50966641 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
50966669 CAAATTCATA
Statistics
Matches: 92, Mismatches: 14, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
42 6 0.07
43 6 0.07
44 32 0.35
45 14 0.15
46 11 0.12
47 14 0.15
48 3 0.03
49 6 0.07
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATTATTATTAAATTA
Found at i:50966662 original size:26 final size:28
Alignment explanation
Indices: 50966608--50966668 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
50966598 TATTATCAAT
* *
50966608 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
50966636 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
50966662 AATTATA
1 AATTATA
50966669 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:50966833 original size:120 final size:119
Alignment explanation
Indices: 50966709--50967469 Score: 1304
Period size: 120 Copynumber: 6.4 Consensus size: 119
50966699 AATTATTTTA
* *
50966709 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTT-AAATTATCTTTT
50966774 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
50966829 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTT-AAATTATCTTTT
50966894 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
50966949 AATTTTGTTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAATTATCTTTT
50967014 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
50967069 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTT-AAATTATCTTTT
50967134 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
50967189 AATTTTGTTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAATTATCTTTT
*
50967254 ATAGTATCATATATTATGATTTGAGTAAATTCAAATAAGAATATTAATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
50967309 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAAT-A--ATTT--A-TA--TTTTA
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTAAATTATCTTTTA
*
50967366 TAGTATCATATATTATGATTTGAGAAAATTCATATAAGAATATTAATTATTAAG
66 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * * *
50967420 AATTTTATTAAATTATATATTTCAATTATATTATACTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
50967470 GTTTAAATAT
Statistics
Matches: 620, Mismatches: 15, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
111 98 0.16
112 1 0.00
113 2 0.00
114 3 0.00
116 2 0.00
117 2 0.00
119 3 0.00
120 505 0.81
121 4 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (119 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTAAATTATCTTTTA
TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:50966858 original size:18 final size:17
Alignment explanation
Indices: 50966830--50966864 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50966820 ATTATTAAGA
*
50966830 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50966847 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50966865 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50967098 original size:18 final size:17
Alignment explanation
Indices: 50967070--50967104 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50967060 ATTATTAAGA
*
50967070 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50967087 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50967105 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50967343 original size:18 final size:18
Alignment explanation
Indices: 50967310--50967365 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 18
50967300 ATTATTAAGA
50967310 ATTTT-ATTA-AATTATAT
1 ATTTTAATTATAA-TATAT
50967327 ATTTTAATTAT-A-ATAT
1 ATTTTAATTATAATATAT
* *
50967343 A-TTTAATAATAATTTAT
1 ATTTTAATTATAATATAT
50967360 ATTTTA
1 ATTTTA
50967366 TAGTATCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 8 0.25
16 6 0.19
17 9 0.28
18 9 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAATTATAATATAT
Found at i:50967349 original size:15 final size:15
Alignment explanation
Indices: 50967314--50967355 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50967304 TTAAGAATTT
*
50967314 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50967328 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50967342 TATTTAATAATAAT
1 TATTTAATTATAAT
50967356 TTATATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50967448 original size:111 final size:111
Alignment explanation
Indices: 50967245--50967467 Score: 392
Period size: 111 Copynumber: 2.0 Consensus size: 111
50967235 TTATGTTAAA
* *
50967245 TTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCAAATAAGAATATTAATTATTAAGA
1 TTATATTTTATAGTATCATATATTATGATTTGAGAAAATTCAAATAAGAATATTAATTATTAAGA
* *
50967310 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAAT
66 ATTTTATTAAATTATATATTTCAATTATAATATACTTAATAATAAT
*
50967356 TTATATTTTATAGTATCATATATTATGATTTGAGAAAATTCATATAAGAATATTAATTATTAAGA
1 TTATATTTTATAGTATCATATATTATGATTTGAGAAAATTCAAATAAGAATATTAATTATTAAGA
*
50967421 ATTTTATTAAATTATATATTTCAATTATATTATACTTAATAATAAT
66 ATTTTATTAAATTATATATTTCAATTATAATATACTTAATAATAAT
50967467 T
1 T
50967468 ATGTTTAAAT
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (111 bp):
TTATATTTTATAGTATCATATATTATGATTTGAGAAAATTCAAATAAGAATATTAATTATTAAGA
ATTTTATTAAATTATATATTTCAATTATAATATACTTAATAATAAT
Found at i:50967703 original size:45 final size:44
Alignment explanation
Indices: 50967620--50967711 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 44
50967610 ACATCTATTC
*
50967620 CATTCAACCAAACACAAGATTACTATTACGTCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* * *
50967664 CATTCAACCAAACA-ATTGATTTGCTATTATGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
50967709 CAT
1 CAT
50967712 CTCTATTCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.38
45 25 0.60
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:50967715 original size:16 final size:16
Alignment explanation
Indices: 50967696--50967758 Score: 81
Period size: 16 Copynumber: 3.9 Consensus size: 16
50967686 GCTATTATGC
50967696 CTCTATTCCATTACAT
1 CTCTATTCCATTACAT
**
50967712 CTCTATTCCATTACGC
1 CTCTATTCCATTACAT
* *
50967728 CTTTATTCCATTACGT
1 CTCTATTCCATTACAT
*
50967744 CTCTATTCCAATACA
1 CTCTATTCCATTACA
50967759 GCGAACCAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.24, C:0.32, G:0.03, T:0.41
Consensus pattern (16 bp):
CTCTATTCCATTACAT
Found at i:50967740 original size:32 final size:32
Alignment explanation
Indices: 50967689--50967753 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
50967679 TTGATTTGCT
*
50967689 ATTATGCCTCTATTCCATTACATCTCTATTCC
1 ATTACGCCTCTATTCCATTACATCTCTATTCC
* *
50967721 ATTACGCCTTTATTCCATTACGTCTCTATTCC
1 ATTACGCCTCTATTCCATTACATCTCTATTCC
50967753 A
1 A
50967754 ATACAGCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.05, T:0.43
Consensus pattern (32 bp):
ATTACGCCTCTATTCCATTACATCTCTATTCC
Found at i:50971307 original size:20 final size:20
Alignment explanation
Indices: 50971277--50971318 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50971267 AAATTTTGAA
*
50971277 AATTTGTTGATTATG-AACT
1 AATTTGTTGATGATGAAACT
50971296 AATTTGGTTGATGATGAAACT
1 AATTT-GTTGATGATGAAACT
50971317 AA
1 AA
50971319 CCTTAATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 9 0.45
21 6 0.30
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (20 bp):
AATTTGTTGATGATGAAACT
Found at i:50977758 original size:23 final size:23
Alignment explanation
Indices: 50977728--50977778 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
50977718 AGGGGATTGC
*
50977728 ATCAGTTATACCAAGATGCTCAT
1 ATCAGTTATACCAAAATGCTCAT
50977751 ATCAGTTATACCAAAATGCTCAT
1 ATCAGTTATACCAAAATGCTCAT
50977774 ATCAG
1 ATCAG
50977779 ACCATGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (23 bp):
ATCAGTTATACCAAAATGCTCAT
Found at i:50977891 original size:10 final size:10
Alignment explanation
Indices: 50977873--50977931 Score: 52
Period size: 11 Copynumber: 5.7 Consensus size: 10
50977863 GTATAGTGAA
50977873 AAAAAAAAAC
1 AAAAAAAAAC
50977883 AAAACAAAAAC
1 AAAA-AAAAAC
50977894 AAGAAAATAAA-
1 AA-AAAA-AAAC
50977905 AAATGAAAAAAC
1 AAA--AAAAAAC
50977917 --AAAAAAAC
1 AAAAAAAAAC
50977925 AAAAAAA
1 AAAAAAA
50977932 CCTCTACTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
8 7 0.17
10 11 0.27
11 15 0.37
12 8 0.20
ACGTcount: A:0.85, C:0.08, G:0.03, T:0.03
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:50978403 original size:20 final size:20
Alignment explanation
Indices: 50978366--50978422 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
50978356 CTTCACTTGG
*
50978366 AAAAAAAAGAAACGAAAAGA
1 AAAAAAAAGAAAAGAAAAGA
* *
50978386 AAAAAAAATAAAATAAAAGA
1 AAAAAAAAGAAAAGAAAAGA
* *
50978406 AGAACAAA-AAAAGAAAA
1 AAAAAAAAGAAAAGAAAA
50978423 AGGAGAGGCC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 8 0.26
20 23 0.74
ACGTcount: A:0.82, C:0.04, G:0.11, T:0.04
Consensus pattern (20 bp):
AAAAAAAAGAAAAGAAAAGA
Found at i:50979395 original size:44 final size:44
Alignment explanation
Indices: 50979316--50979778 Score: 197
Period size: 44 Copynumber: 10.8 Consensus size: 44
50979306 AGCCACCAGC
* * * * *
50979316 CTTATCTCCCTGAGCAGAAGTAGAGTAG-GCTGAAGATTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGATTACAGAT
*
50979360 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGAC-GAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTACAG-AT
* ** ** *
50979404 CTTATCTTCCTAAG--GTAGTAGGAAGCAGATTTAAG-CCACTAG-C
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATCGAAGATTAC-AGAT
* * * * **
50979447 CTTATCTCCCTGAGCAGCT-GTGGAGTAGCTTGAAGATTGTAGAT
1 CTTATCTCCCTAAGCAG-TAGTGGAGCAGATCGAAGATTACAGAT
* *
50979491 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGT-GA-AT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT--TACAGAT
* ** *
50979535 CTTATCTTCCTAAG--GTAGTAGGAAGCAGATTTAAGCA--ACCAGCT
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATCGAAG-ATTA-CAGAT
* * ** * * **
50979579 -TTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTACAGAT
* ***
50979622 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGC-GAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTACAG-AT
* * *
50979666 CTTATCTCCCTGAGTAGCAGT-G-G-AG-T---AGATTGA-AGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATT-ACAGAT
* * *
50979703 CTTATCTCCTTAAGCAGCAGTGGAGCAGATCG--CATTA-AG-T
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTACAGAT
* * * *
50979743 CTTATCTCTCTAAACAGTAGTAGAGCAGATAGAAGA
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
50979779 AACCAATCCT
Statistics
Matches: 315, Mismatches: 68, Indels: 74
0.69 0.15 0.16
Matches are distributed among these distances:
37 23 0.07
38 2 0.01
39 1 0.00
40 30 0.10
41 6 0.02
42 16 0.05
43 56 0.18
44 168 0.53
45 11 0.03
46 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTACAGAT
Found at i:50979583 original size:87 final size:87
Alignment explanation
Indices: 50979492--50979651 Score: 216
Period size: 87 Copynumber: 1.8 Consensus size: 87
50979482 ATTGTAGATC
* * *
50979492 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGT-GAATCTTATCTTCCTAAGGTAGTAG
1 TTATCTCCCTAAGCAGCAGTGGAATAGATCGAAGATGGTAG-ATCTTATCTCCCTAA-GTAGTAG
50979556 -GAAGCAGATTTAAGCAACCAGCT
64 TGAAGCAGATTTAAGCAACCAGCT
* * * *
50979579 TTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTAGATCTTATCTCCCTAAGTAGTAGTG
1 TTATCTCCCTAAGCAGCAGTGGAATAGATCGAAGATGGTAGATCTTATCTCCCTAAGTAGTAGTG
*
50979644 GAGCAGAT
66 AAGCAGAT
50979652 CGAAGACGGC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
86 7 0.11
87 55 0.87
88 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (87 bp):
TTATCTCCCTAAGCAGCAGTGGAATAGATCGAAGATGGTAGATCTTATCTCCCTAAGTAGTAGTG
AAGCAGATTTAAGCAACCAGCT
Found at i:50979696 original size:131 final size:131
Alignment explanation
Indices: 50979300--50979672 Score: 593
Period size: 131 Copynumber: 2.8 Consensus size: 131
50979290 CAGTGGGATG
* * * * **
50979300 GATTGAAGCCACCAGCCTTATCTCCCTGAGCAGAAGTAGAGTAGGCTGAAGATTACAGATCTTAT
1 GATTTAAGCCACCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTAT
*
50979365 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACGAATCTTATCTTCCTAAGGTAGTAGGAAGC
66 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGC
50979430 A
131 A
* * *
50979431 GATTTAAGCCACTAGCCTTATCTCCCTGAGCAGCTGTGGAGTAGCTTGAAGATTGTAGATCTTAT
1 GATTTAAGCCACCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTAT
* *
50979496 CTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGTAGGAAGC
66 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGC
50979561 A
131 A
* * *
50979562 GATTTAAGCAACCAGCTTTATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTAGATCTTAT
1 GATTTAAGCCACCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTAT
* *
50979627 CTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
66 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCT
50979673 CCCTGAGTAG
Statistics
Matches: 220, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 220 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (131 bp):
GATTTAAGCCACCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTAT
CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGC
A
Found at i:50979771 original size:121 final size:124
Alignment explanation
Indices: 50979621--50980195 Score: 564
Period size: 128 Copynumber: 4.6 Consensus size: 124
50979611 AGATTGTAGA
* * ** * *
50979621 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTG-AGTAGCA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGA-AACCAATCCTATCTCCCTGAAGTAGCA
* * ** *
50979685 GTGGAGTAGATT-GA-AGATCTTATCTC-CTTAAGCAGCAGTGGAGCAGATCGCATTAAG
65 GTGGAGTAGATTACACAGATCTTATCTCTCTAAAGCAGCAGTAAAGCAGATCGCATCAAG
* * * *
50979742 TCTTATCTCTCTAAACAGTAGTAGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTAGCAG
* **
50979807 TGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAAAGCAGATCGCATCAAG
66 TGGAGTAGATT---A-CACAGATCTTATCTCTCTAAAGCAGCAGTAAAGCAGATCGCATCAAG
* * * *** *
50979870 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCATATCTCCAAAAAGTTGCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTAGCAG
** * ** ** *
50979935 TGGAGCGGATTAAAACCACAGATCTTATCTTTCCGAAGTTGCAGTAGAGCAGATCGCATCAAG
66 TGGAGTAGATT---A-CACAGATCTTATCTCTCTAAAGCAGCAGTAAAGCAGATCGCATCAAG
* * * **
50979998 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTTCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTAGCAG
** ** * * *
50980063 TGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCAATAGAGCAGATAGCATCAAG
66 TGGAGTAGATT---A-CACAGATCTTATCTCTCTAAAGCAGCAGTAAAGCAGATCGCATCAAG
* * * *
50980126 TCTTATCTCCCTAAGCAATAGTGGAGCAAACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTAGCAG
50980191 TGGAG
66 TGGAG
50980196 CCGATTAAAC
Statistics
Matches: 400, Mismatches: 46, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
120 15 0.04
121 49 0.12
126 1 0.00
127 12 0.03
128 323 0.81
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (124 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTAGCAG
TGGAGTAGATTACACAGATCTTATCTCTCTAAAGCAGCAGTAAAGCAGATCGCATCAAG
Found at i:50980092 original size:44 final size:43
Alignment explanation
Indices: 50979788--50980139 Score: 177
Period size: 44 Copynumber: 8.3 Consensus size: 43
50979778 AAACCAATCC
* **
50979788 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCT
* ** *** *
50979832 TATCTCTCTAAAGTTGCAGTAAAGCAGATCGCATCA-AG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATAAAACCACAGATCT
** * * ** *
50979873 TATCTCCCT-AAGCAGTAGTGGAGCAGACAAAAGAAACCA-ATCA
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATAAAA-CCA-CAGATCT
** *
50979916 TATCTCCAAAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCT
* * * *** *
50979960 TATCTTTCC-GAAGTTGCAGTAGAGCAGATCGCATCA-AG-TCT
1 TATC-TCCCTAAAGTTGCAGTGGAGCAGATAAAACCACAGATCT
** * * ** *
50980001 TATCTCCCT-AAGCAGTAGTGGAGCAGACAAAAGAAACCA-ATCC
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATAAAA-CCA-CAGATCT
* *
50980044 TATCTCCCTAAAGTTTCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCT
* * * ** *
50980088 TATCTCTCTAAAGTTGCAATAGAGCAGATAGCATCA-AG-TCT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGATAAAACCACAGATCT
50980129 TATCTCCCTAA
1 TATCTCCCTAA
50980140 GCAATAGTGG
Statistics
Matches: 220, Mismatches: 72, Indels: 35
0.67 0.22 0.11
Matches are distributed among these distances:
40 32 0.15
41 33 0.15
42 6 0.03
43 39 0.18
44 100 0.45
45 10 0.05
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (43 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGATAAAACCACAGATCT
Found at i:50980232 original size:128 final size:128
Alignment explanation
Indices: 50979699--50980204 Score: 762
Period size: 128 Copynumber: 4.0 Consensus size: 128
50979689 AGTAGATTGA
* ** * * * *
50979699 AGATCTTATCTC-CTTAAGCAGCAGTGGAGCAGATCGCATTAAGTCTTATCTCTCTAAACAGTAG
1 AGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
* * * * *
50979763 TAGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCAC
66 TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCAC
*
50979826 AGATCTTATCTCTCTAAAGTTGCAGTAAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
1 AGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
* **
50979891 TGGAGCAGACAAAAGAAACCAATCATATCTCCAAAAAGTTGCAGTGGAGCGGATTAAAACCAC
66 TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCAC
* **
50979954 AGATCTTATCTTTCCGAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
1 AGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
*
50980019 TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTTCAGTGGAGCGGATTAAAACCAC
66 TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCAC
* * *
50980082 AGATCTTATCTCTCTAAAGTTGCAATAGAGCAGATAGCATCAAGTCTTATCTCCCTAAGCAATAG
1 AGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
* * * *
50980147 TGGAGCAAACAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCCGATTAAA
66 TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
50980205 CCGATGAATC
Statistics
Matches: 343, Mismatches: 35, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
127 12 0.03
128 331 0.97
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (128 bp):
AGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
TGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCAC
Found at i:50985028 original size:66 final size:66
Alignment explanation
Indices: 50984922--50985050 Score: 224
Period size: 66 Copynumber: 2.0 Consensus size: 66
50984912 TTGCACATGA
*
50984922 TGCATTTGGGGATTTTCAGAATGCTTCAAAACCGAGCACAACT-GCATTTCCTTCTAGCGGTTTC
1 TGCATTTGGGGATTTTCAGAATGCTTCAAAACCAAGCACAA-TGGCATTTCCTTCTAGCGGTTTC
50984986 AG
65 AG
*
50984988 TGCATTTGGGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCGTTTCCTTCTAGCGGTTT
1 TGCATTTGGGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCATTTCCTTCTAGCGGTTT
50985051 TGGTTCAACT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 1 0.02
66 59 0.98
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (66 bp):
TGCATTTGGGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCATTTCCTTCTAGCGGTTTCA
G
Found at i:50993813 original size:43 final size:43
Alignment explanation
Indices: 50993760--50993873 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
50993750 AAAACACCAT
* * **
50993760 TATAAAACATGGCCTTTAGCGGCGTTTTTCCCACAAACTTCGC
1 TATAGAACATGACCTTTAGCGGCGTTTTTCCCACAAACGCCGC
* ** * *
50993803 TATAGAACATGACCTTTACCTACGCTTTCCCCACAAACGCCGC
1 TATAGAACATGACCTTTAGCGGCGTTTTTCCCACAAACGCCGC
* *
50993846 CAAAGAA-ATGACCTTTAGCGGCGTTTTT
1 TATAGAACATGACCTTTAGCGGCGTTTTT
50993874 AGTAAAAGCG
Statistics
Matches: 55, Mismatches: 16, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
42 16 0.29
43 39 0.71
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (43 bp):
TATAGAACATGACCTTTAGCGGCGTTTTTCCCACAAACGCCGC
Found at i:51000910 original size:20 final size:21
Alignment explanation
Indices: 51000869--51000911 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
51000859 TAGTACAAAA
* *
51000869 TTTTTATATTTTAAACTTATT
1 TTTTTATATCTTAAACTCATT
51000890 TTTTTATATCTTAAA-TCATT
1 TTTTTATATCTTAAACTCATT
51000910 TT
1 TT
51000912 AAAAACTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTATATCTTAAACTCATT
Found at i:51001870 original size:19 final size:20
Alignment explanation
Indices: 51001815--51001861 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
51001805 GCAGATGGTC
*
51001815 GGGG-AAAATCTAAGGGATTT
1 GGGGAAAAATTTAA-GGATTT
51001835 GGGGAAAAATTTAAGGATTT
1 GGGGAAAAATTTAAGGATTT
51001855 -GGGAAAA
1 GGGGAAAA
51001862 CTTTTAGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 10 0.40
21 8 0.32
ACGTcount: A:0.40, C:0.02, G:0.34, T:0.23
Consensus pattern (20 bp):
GGGGAAAAATTTAAGGATTT
Found at i:51002013 original size:40 final size:41
Alignment explanation
Indices: 51001958--51002053 Score: 122
Period size: 41 Copynumber: 2.4 Consensus size: 41
51001948 AAAATGATAC
* *
51001958 TTTGCGGCGTTTTTCTTAT-AATGCCGCTAATGCTTGACCT
1 TTTGCGGCGTTTTTCTCATAAACGCCGCTAATGCTTGACCT
* ** *
51001998 TTTGCGGCGTCTTTCTCATAAACGCCGCTGTTGCTTTACCT
1 TTTGCGGCGTTTTTCTCATAAACGCCGCTAATGCTTGACCT
*
51002039 ATTGCGGCGTTTTTC
1 TTTGCGGCGTTTTTC
51002054 CGTTAGCGCC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 17 0.36
41 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.21, T:0.42
Consensus pattern (41 bp):
TTTGCGGCGTTTTTCTCATAAACGCCGCTAATGCTTGACCT
Found at i:51013821 original size:21 final size:21
Alignment explanation
Indices: 51013792--51013835 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
51013782 ATCTTCTAGG
*
51013792 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
51013813 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
51013834 AT
1 AT
51013836 GTAATCTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:51013841 original size:19 final size:19
Alignment explanation
Indices: 51013791--51013846 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
51013781 AATCTTCTAG
*
51013791 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
51013810 GATATATACAATCTTAGATAT
1 GATATGT--AATCTTAGATAT
51013831 GATATGTAATCTTAGA
1 GATATGTAATCTTAGA
51013847 AGATATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
21 18 0.56
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:51013882 original size:21 final size:23
Alignment explanation
Indices: 51013835--51013882 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
51013825 AGATATGATA
*
51013835 TGTAATCTTAGAAGATATTATTT
1 TGTAATCTTAGAAGATATTAATT
51013858 TGTAATCTTAG-AGAT-TTAATT
1 TGTAATCTTAGAAGATATTAATT
51013879 TGTA
1 TGTA
51013883 GATACCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.38
22 4 0.17
23 11 0.46
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATTAATT
Found at i:51014328 original size:10 final size:11
Alignment explanation
Indices: 51014307--51014338 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
51014297 TTAATTTTGT
51014307 TATTATTATTA
1 TATTATTATTA
51014318 TATTA-TATTA
1 TATTATTATTA
51014328 TA-TATTATTA
1 TATTATTATTA
51014338 T
1 T
51014339 TATACCTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.10
10 13 0.65
11 5 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTATTATTA
Found at i:51014352 original size:23 final size:23
Alignment explanation
Indices: 51014307--51014353 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
51014297 TTAATTTTGT
* *
51014307 TATTATTATTATATTATATTATA
1 TATTATTATTATACTACATTATA
51014330 TATTATTATTATACCTACA-TATA
1 TATTATTATTATA-CTACATTATA
51014353 T
1 T
51014354 GTGCGCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTATTATTATACTACATTATA
Found at i:51016460 original size:21 final size:21
Alignment explanation
Indices: 51016426--51016468 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
51016416 GCCGCCCTTA
51016426 TTTTATTGAGTATT-TTGCATG
1 TTTTATTGAGTATTATT-CATG
51016447 TTTTATTGTA-TATTATTCATG
1 TTTTATTG-AGTATTATTCATG
51016468 T
1 T
51016469 AAAAACCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.21, C:0.05, G:0.14, T:0.60
Consensus pattern (21 bp):
TTTTATTGAGTATTATTCATG
Found at i:51017617 original size:15 final size:16
Alignment explanation
Indices: 51017597--51017626 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51017587 GTTTTTACTA
51017597 AAAGCA-TGAAAAATC
1 AAAGCAGTGAAAAATC
51017612 AAAGCAGTGAAAAAT
1 AAAGCAGTGAAAAAT
51017627 AATCAAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.10, G:0.17, T:0.13
Consensus pattern (16 bp):
AAAGCAGTGAAAAATC
Found at i:51018875 original size:30 final size:30
Alignment explanation
Indices: 51018829--51018952 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
51018819 TTTTATTATG
*
51018829 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
51018860 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
51018890 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
51018920 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
51018950 CCA
1 CCA
51018953 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:51018884 original size:15 final size:15
Alignment explanation
Indices: 51018839--51018946 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
51018829 CCAATATCTC
51018839 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
51018854 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
51018869 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
51018884 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
51018899 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
51018914 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
51018929 GATACCCATATCTTT
1 GATACCCATATCTTT
51018944 GAT
1 GAT
51018947 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:51023567 original size:30 final size:30
Alignment explanation
Indices: 51023521--51023644 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
51023511 TTTTATTATG
*
51023521 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
51023552 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
51023582 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
51023612 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
51023642 CCA
1 CCA
51023645 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:51023576 original size:15 final size:15
Alignment explanation
Indices: 51023531--51023638 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
51023521 CCAATATCTC
51023531 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
51023546 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
51023561 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
51023576 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
51023591 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
51023606 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
51023621 GATACCCATATCTTT
1 GATACCCATATCTTT
51023636 GAT
1 GAT
51023639 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:51028255 original size:30 final size:30
Alignment explanation
Indices: 51028209--51028302 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
51028199 TTTTATTATG
*
51028209 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
51028240 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
51028270 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
51028300 CCA
1 CCA
51028303 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:51028264 original size:15 final size:15
Alignment explanation
Indices: 51028219--51028296 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
51028209 CCAATATCTC
51028219 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
51028234 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
51028249 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
51028264 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
51028279 GATACCCATATCTTT
1 GATACCCATATCTTT
51028294 GAT
1 GAT
51028297 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:51029522 original size:15 final size:16
Alignment explanation
Indices: 51029502--51029547 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
51029492 TTTTTTATTA
51029502 TTTTTAATTTA-ATAG
1 TTTTTAATTTATATAG
*
51029517 TTTTTAAATATATATAG
1 TTTTT-AATTTATATAG
*
51029534 TTTTAAATTTATAT
1 TTTTTAATTTATAT
51029548 GATCTAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 5 0.19
16 13 0.50
17 8 0.31
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (16 bp):
TTTTTAATTTATATAG
Found at i:51039371 original size:7 final size:7
Alignment explanation
Indices: 51039353--51039391 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
51039343 CTAAACTAAT
51039353 TTTATAAA
1 TTTAT-AA
51039361 TTTATAA
1 TTTATAA
51039368 TTTATAA
1 TTTATAA
51039375 -TTA-AA
1 TTTATAA
51039380 TTTATAA
1 TTTATAA
51039387 TTTAT
1 TTTAT
51039392 TTGACAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
5 2 0.07
6 6 0.21
7 16 0.55
8 5 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TTTATAA
Found at i:51039578 original size:21 final size:21
Alignment explanation
Indices: 51039537--51039623 Score: 122
Period size: 22 Copynumber: 4.0 Consensus size: 21
51039527 CCCTAACACT
51039537 TTAACTTAAAAA-CTATAAACCC
1 TTAACTTAAAAACCT-T-AACCC
51039559 TTAACTTAAAAACCTTAACCC
1 TTAACTTAAAAACCTTAACCC
*
51039580 TTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAA-CCTTAACCC
*
51039602 TTAACTTAAAAACTTTAACCC
1 TTAACTTAAAAACCTTAACCC
51039623 T
1 T
51039624 AAACCTAACC
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
21 25 0.42
22 33 0.55
23 2 0.03
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (21 bp):
TTAACTTAAAAACCTTAACCC
Found at i:51039586 original size:43 final size:43
Alignment explanation
Indices: 51039537--51039623 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
51039527 CCCTAACACT
*
51039537 TTAACTTAAAAACTATAAACCCTTAACTTAAAAACCTTAACCC
1 TTAACTTAAAAACCATAAACCCTTAACTTAAAAACCTTAACCC
* *
51039580 TTAACTTAAAAACCCTAAACCCTTAACTTAAAAACTTTAACCC
1 TTAACTTAAAAACCATAAACCCTTAACTTAAAAACCTTAACCC
51039623 T
1 T
51039624 AAACCTAACC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (43 bp):
TTAACTTAAAAACCATAAACCCTTAACTTAAAAACCTTAACCC
Found at i:51039747 original size:59 final size:58
Alignment explanation
Indices: 51039655--51039776 Score: 199
Period size: 59 Copynumber: 2.1 Consensus size: 58
51039645 TAATTTGATA
*
51039655 AATTTTACTAACACACTATAGCGTTTTTACAAAATGTTTCGATTGGTACAAAAAAATAT
1 AATTTTACTAACAAACTATAGCGTTTTTACAAAATGTTTCGATTGGTAC-AAAAAATAT
* * *
51039714 AATTTTACTAACAAAGTATTGCGTTTTTACAAAATGTTTTGATTGGTACAAAAAATAT
1 AATTTTACTAACAAACTATAGCGTTTTTACAAAATGTTTCGATTGGTACAAAAAATAT
51039772 AATTT
1 AATTT
51039777 GTTTACAACG
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 14 0.24
59 45 0.76
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.39
Consensus pattern (58 bp):
AATTTTACTAACAAACTATAGCGTTTTTACAAAATGTTTCGATTGGTACAAAAAATAT
Found at i:51043062 original size:125 final size:124
Alignment explanation
Indices: 51042774--51043207 Score: 665
Period size: 125 Copynumber: 3.5 Consensus size: 124
51042764 CAAACATGCT
* * *
51042774 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTGATAAAGCATCCTACTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
* *
51042839 GAAGCGTTTTTATACTATTCGCTCAGAAACGTCAACTTGAAATTATTTTTT-AGAACCA
66 GAAGCGTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
* * * *
51042897 ACTGTAGTAAAAGCGCGTCCACGTGGGTGCGATTTTAGAAATTCCTCTGATAAAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
*
51042962 GAAGTGTCTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
66 GAAGCGT-TTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
* **
51043022 ACTGTAGCAAAAGCGCGTCCATGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATATTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
* *
51043087 GAAGCGTTTTTTATACTATTCTCTCA-AAAGTGTCAACTCGAAATTATTTTTTCAGGACCA
66 GAAGCG-TTTTTATACTATTCGCTCAGAAA-CGTCAACTCGAAATTATTTTTTCAGGACCA
* * *
51043147 ACTGTAGCAAAAGTGCGTCAACGTGGGCTCGATTTCAGAAATTCTTCTGATAAAGCATCCT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCT
51043208 ATTTTAATTT
Statistics
Matches: 281, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
123 64 0.23
124 46 0.16
125 170 0.60
126 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
GAAGCGTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
Found at i:51043349 original size:16 final size:16
Alignment explanation
Indices: 51043328--51043383 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
51043318 TTTTTCTCTA
*
51043328 AAACCCTAAAAACATT
1 AAACCCTAAAAACCTT
* *
51043344 AAACCCT--AACCCTAA
1 AAACCCTAAAAACCT-T
51043359 AAACCCTAAAAACCTT
1 AAACCCTAAAAACCTT
51043375 AAACCCTAA
1 AAACCCTAA
51043384 TCCTAAAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
14 4 0.12
15 7 0.22
16 16 0.50
17 5 0.16
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (16 bp):
AAACCCTAAAAACCTT
Found at i:51043364 original size:15 final size:15
Alignment explanation
Indices: 51043344--51043404 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
51043334 TAAAAACATT
*
51043344 AAACCCTAACCCTAA
1 AAACCCTAAACCTAA
*
51043359 AAACCCTAAAAACCT-T
1 AAACCCT--AAACCTAA
*
51043375 AAACCCTAATCCTAA
1 AAACCCTAAACCTAA
*
51043390 AAACCCAAAACCTAA
1 AAACCCTAAACCTAA
51043405 CGTGGAGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
14 5 0.14
15 20 0.54
16 7 0.19
17 5 0.14
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (15 bp):
AAACCCTAAACCTAA
Found at i:51043364 original size:31 final size:31
Alignment explanation
Indices: 51043327--51043399 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
51043317 TTTTTTCTCT
51043327 AAAACCCTAAAAACATTAAACCCTAACCCTA
1 AAAACCCTAAAAACATTAAACCCTAACCCTA
* *
51043358 AAAACCCTAAAAACCTTAAACCCTAATCCTA
1 AAAACCCTAAAAACATTAAACCCTAACCCTA
51043389 AAAACCC-AAAA
1 AAAACCCTAAAA
51043400 CCTAACGTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 4 0.10
31 36 0.90
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (31 bp):
AAAACCCTAAAAACATTAAACCCTAACCCTA
Found at i:51048054 original size:22 final size:22
Alignment explanation
Indices: 51048026--51048070 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
51048016 GATCCTTAAC
51048026 TTTGAAAGTAATTTAATGAAAT
1 TTTGAAAGTAATTTAATGAAAT
51048048 TTTGAAAGTAATTTAATGAAAT
1 TTTGAAAGTAATTTAATGAAAT
51048070 T
1 T
51048071 CAAACTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TTTGAAAGTAATTTAATGAAAT
Found at i:51048303 original size:26 final size:28
Alignment explanation
Indices: 51048238--51048309 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
51048228 ATAAGAAAAT
* *
51048238 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
*
51048268 TTATTATTAAATTATATGTAATAATA-A
1 TTATTATTAAATTATATGAAATAATATA
51048295 TTATT-TTAAATTATA
1 TTATTATTAAATTATA
51048310 CAAATTCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 10 0.26
27 6 0.15
28 14 0.36
29 1 0.03
30 8 0.21
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:51048499 original size:18 final size:17
Alignment explanation
Indices: 51048471--51048505 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51048461 ATTATTAAGA
*
51048471 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51048488 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51048506 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51048507 original size:28 final size:27
Alignment explanation
Indices: 51048475--51048547 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 27
51048465 TTAAGAATTT
51048475 TATTAAATTATATATTTTAATTAAAATA
1 TATTAAATTATATATTTT-ATTAAAATA
* * * *
51048503 TATTAAATAATA-ATTATGTTTAAATA
1 TATTAAATTATATATTTTATTAAAATA
*
51048529 TGATTAAATTATTTATTTT
1 T-ATTAAATTATATATTTT
51048548 TGATAATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 8 0.22
27 13 0.36
28 15 0.42
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TATTAAATTATATATTTTATTAAAATA
Found at i:51048716 original size:44 final size:45
Alignment explanation
Indices: 51048667--51048761 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
51048657 TTACACCTCT
* *
51048667 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
51048711 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
51048756 ATTACA
1 ATTACA
51048762 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:51048761 original size:16 final size:16
Alignment explanation
Indices: 51048742--51048793 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
51048732 GATTTGCTAT
* *
51048742 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
51048758 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51048774 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51048790 TACA
1 TACA
51048794 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Done.