Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 189 of 228
Found at i:56114774 original size:17 final size:18
Alignment explanation
Indices: 56114752--56114786 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
56114742 CAAAAAGAGT
56114752 GAAAAAC-GAGCAAAAAA
1 GAAAAACGGAGCAAAAAA
56114769 GAAAAACTGGAGCAAAAA
1 GAAAAAC-GGAGCAAAAA
56114787 CAAGAGCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.66, C:0.11, G:0.20, T:0.03
Consensus pattern (18 bp):
GAAAAACGGAGCAAAAAA
Found at i:56116391 original size:9 final size:9
Alignment explanation
Indices: 56116379--56116428 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
56116369 TTAAATATTT
56116379 TTTTTATAA
1 TTTTTATAA
*
56116388 TTTTCAGTAA
1 TTTTTA-TAA
56116398 --TTTATAA
1 TTTTTATAA
56116405 TTTTTATAA
1 TTTTTATAA
56116414 TTTTTA-ATA
1 TTTTTATA-A
56116423 TTTTTA
1 TTTTTA
56116429 ATTTTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
7 3 0.09
8 4 0.11
9 25 0.71
10 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:56116403 original size:17 final size:16
Alignment explanation
Indices: 56116381--56116421 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
56116371 AAATATTTTT
56116381 TTTATAATTTTCAGTAA
1 TTTATAATTTTCA-TAA
*
56116398 TTTATAATTTTTATAA
1 TTTATAATTTTCATAA
*
56116414 TTTTTAAT
1 TTTATAAT
56116422 ATTTTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTATAATTTTCATAA
Found at i:56116416 original size:16 final size:16
Alignment explanation
Indices: 56116381--56116437 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
56116371 AAATATTTTT
*
56116381 TTTATAATTTTCAGTAA
1 TTTATAATTTTTA-TAA
56116398 TTTATAATTTTTATAA
1 TTTATAATTTTTATAA
*
56116414 TTTTTAATATTTT-TAA
1 TTTATAAT-TTTTATAA
56116430 TTT-TAATT
1 TTTATAATT
56116438 AATTACTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
14 1 0.03
15 4 0.11
16 16 0.43
17 16 0.43
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTATAATTTTTATAA
Found at i:56128987 original size:32 final size:32
Alignment explanation
Indices: 56128951--56129016 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
56128941 TAGCCTTGTA
56128951 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
1 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
56128983 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
1 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
56129015 TC
1 TC
56129017 TTTGCATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.29, G:0.09, T:0.38
Consensus pattern (32 bp):
TCGAACTTCATTTTTACCAGGAAATCCTTCCT
Found at i:56145890 original size:50 final size:50
Alignment explanation
Indices: 56145826--56145920 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
56145816 TAGTTCTTTT
56145826 ATTTAATTTGATTGATTTTACAATAGAAAAATTCT-TTTATCAAAATGTTG
1 ATTTAATTTGATTGATTTTACAATAGAAAAATTCTCTTT-TCAAAATGTTG
* * *
56145876 ATTTGATTTGATTGATTTTACAATTGAAAATTTCTCTTTTCAAAA
1 ATTTAATTTGATTGATTTTACAATAGAAAAATTCTCTTTTCAAAA
56145921 CGTAAAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 38 0.93
51 3 0.07
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.47
Consensus pattern (50 bp):
ATTTAATTTGATTGATTTTACAATAGAAAAATTCTCTTTTCAAAATGTTG
Found at i:56146740 original size:29 final size:27
Alignment explanation
Indices: 56146700--56146767 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
56146690 GGCCAATGAA
56146700 TAAAAAATATTAAATTTTTT-TCTTTTT
1 TAAAAAATATTAAATTTTTTAT-TTTTT
56146727 TGAATAAAATATT--ATTTTTTATTTTTT
1 T-AA-AAAATATTAAATTTTTTATTTTTT
56146754 TAAAAAA-ATTAAAT
1 TAAAAAATATTAAAT
56146768 AAAAATATGG
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
24 3 0.08
25 4 0.11
26 4 0.11
27 14 0.39
28 3 0.08
29 8 0.22
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (27 bp):
TAAAAAATATTAAATTTTTTATTTTTT
Found at i:56146902 original size:21 final size:19
Alignment explanation
Indices: 56146874--56147420 Score: 179
Period size: 19 Copynumber: 27.3 Consensus size: 19
56146864 GCGCCAATGG
*
56146874 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
56146893 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
56146914 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
56146933 ATAATTATTTTAT-AACTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
***
56146956 GT-ATTTATAGT-TTTTTATT
1 GTAATTT-T-GTATGAATATT
56146975 AGT-ATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATT
*
56146994 GTAATTTTATATGAATATT
1 GTAATTTTGTATGAATATT
* * *
56147013 GTAATTATTTTTTAATTAATTTT
1 GT-A--ATTTTGT-ATGAATATT
* * *
56147036 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
56147056 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
56147074 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
*
56147095 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
56147114 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
***
56147137 GT-A-TTTGTAGTTTTTGATT
1 GTAATTTTGTA-TGAAT-ATT
56147156 AGT-ATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATT
*
56147175 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
56147194 GTAATTATT-T-T--ATAAT
1 GTAATT-TTGTATGAATATT
* *
56147210 -TAATTTTGTATTTATAGTTTTT
1 GTAATTTTGTA-TGA-A--TATT
56147232 GATTAGTATTTTGTATGAATATT
1 G--TA--ATTTTGTATGAATATT
*
56147255 GTAATTATTTTAT-AATTAATCTT
1 GTAATT-TTGTATGAA-T-A--TT
* * *
56147278 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
56147298 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
56147316 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
*
56147335 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
***
56147358 GT-A-TTTGTAGTTTTTGATT
1 GTAATTTTGTA-TGAAT-ATT
56147377 AGT-ATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATT
*
56147396 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
56147415 GTAATT
1 GTAATT
56147421 AGTTTATAAT
Statistics
Matches: 402, Mismatches: 57, Indels: 138
0.67 0.10 0.23
Matches are distributed among these distances:
14 2 0.00
15 6 0.01
16 4 0.01
17 11 0.03
18 15 0.04
19 162 0.40
20 67 0.17
21 68 0.17
22 21 0.05
23 29 0.07
24 3 0.01
25 4 0.01
26 2 0.00
27 8 0.02
ACGTcount: A:0.30, C:0.01, G:0.12, T:0.57
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:56147007 original size:80 final size:80
Alignment explanation
Indices: 56146899--56147481 Score: 635
Period size: 80 Copynumber: 7.3 Consensus size: 80
56146889 TATTGTAACT
* *
56146899 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAACTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
*
56146964 AGTTTTTTATTAGTA
66 AGTTTTTGATTAGTA
* *
56146979 TTTTGTATGAATATTGTAATTTTATATGAATATTGTAATTATTTTTTAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
*
56147044 AGTTTTGGATTAGTA
66 AGTTTTTGATTAGTA
* * *
56147059 TTTTGTATGAATATTGTAATTTTTTGTATGAATATTATAATT-TTGTATGAA-T-A--TTGTAAT
1 TTTTGTATGAATATTGTAA--TTTTGTATGAATATTGTAATTATTTTAT-AATTAATTTTGTATT
* *
56147119 TAT--TTTATAATTA--A
63 TATAGTTTTTGATTAGTA
* * * *
56147133 TTTTGTATTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATT-TTGTATGAA-T-A--T
1 TTTTGTA--TG-A-ATATTG--TA--ATTTTGTATGAATATTGTAATTATTTTAT-AATTAATTT
* * *
56147193 TGTAATTAT--TTTATAATTA--A
57 TGTATTTATAGTTTTTGATTAGTA
* * *
56147213 TTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATCTT
1 TTTTGTA-TGA-A--TATTG--TA--ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTT
*
56147278 GTATTTATAGTTTTGGATTAGTA
58 GTATTTATAGTTTTTGATTAGTA
*
56147301 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
56147366 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
* *
56147381 TTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
56147446 AGTTTTTGATTAGTA
66 AGTTTTTGATTAGTA
56147461 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
56147482 ATTTTATAAT
Statistics
Matches: 447, Mismatches: 34, Indels: 44
0.85 0.06 0.08
Matches are distributed among these distances:
74 8 0.02
76 9 0.02
77 1 0.00
78 14 0.03
79 2 0.00
80 346 0.77
81 11 0.02
82 25 0.06
84 13 0.03
86 8 0.02
87 2 0.00
88 8 0.02
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (80 bp):
TTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTTGATTAGTA
Found at i:56147182 original size:181 final size:181
Alignment explanation
Indices: 56146877--56147265 Score: 670
Period size: 181 Copynumber: 2.1 Consensus size: 181
56146867 CCAATGGGTA
* * *
56146877 ATTTTGTATGTATATTGTAACTTTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATT
1 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTATAATTTTGTATGAATATTATAATTATT
* *
56146942 TTATAACTAATTTTGTATTTATAGTTTTTTATTAGTATTTTGTATGAATATTGTAATTTTATATG
66 TTATAACTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTATATG
*
56147007 AATATTGTAATTATTTTTTAATTAATTTTGTATTTATAGTTTTGGATTAGT
131 AATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
*
56147058 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATT
1 ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTATAATTTTGTATGAATATTATAATTATT
* * *
56147123 TTATAATTAATTTTGTATTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTGTATG
66 TTATAACTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTATATG
*
56147188 AATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
131 AATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
56147239 ATTTTGTATGAATATTGTAATTATTTT
1 ATTTTGTATGAATATTGTAATT-TTTT
56147266 ATAATTAATC
Statistics
Matches: 196, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
181 192 0.98
182 4 0.02
ACGTcount: A:0.30, C:0.01, G:0.12, T:0.58
Consensus pattern (181 bp):
ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTATAATTTTGTATGAATATTATAATTATT
TTATAACTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTATATG
AATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTGGATTAGT
Found at i:56147219 original size:34 final size:34
Alignment explanation
Indices: 56147176--56147281 Score: 109
Period size: 34 Copynumber: 3.3 Consensus size: 34
56147166 ATGAATATTA
56147176 TAATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAAT
* * * * *
56147210 TAATTTTG--T--AT-TTATAGTT-TTTGATTAG
1 TAATTTTGTATGAATATTGTAATTATTTTATAAT
56147238 T-ATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAAT
*
56147271 TAATCTTGTAT
1 TAATTTTGTAT
56147282 TTATAGTTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
27 6 0.11
28 7 0.13
29 7 0.13
30 2 0.04
31 2 0.04
32 7 0.13
33 7 0.13
34 16 0.30
ACGTcount: A:0.31, C:0.01, G:0.10, T:0.58
Consensus pattern (34 bp):
TAATTTTGTATGAATATTGTAATTATTTTATAAT
Found at i:56147256 original size:141 final size:139
Alignment explanation
Indices: 56147098--56147541 Score: 596
Period size: 141 Copynumber: 3.2 Consensus size: 139
56147088 GAATATTATA
56147098 ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTAGTATTT
1 ATTTTGTATGAATATTGTAATTATTTTATAATTAA-TTTGTATTT-TAGTTTTTGATTAGTATTT
56147163 TGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGT
64 TGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGT
56147228 TTTTGATTAGT
129 TTTTGATTAGT
*
56147239 ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAGTATTT
1 ATTTTGTATGAATATTGTAATTATTTTATAATTAAT-TTGTATTT-TAGTTTTTGATTAGTATTT
* *
56147304 TGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGT
64 TGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGT
56147369 TTTTGATTAGT
129 TTTTGATTAGT
* * * * *
56147380 ATTTTGTATGAATATTATAATT-TTGTATGAA-T-A-TTGTA-ATTAGTTTATAATTA--ATTTT
1 ATTTTGTATGAATATTGTAATTATTTTAT-AATTAATTTGTATTTTAGTTTTTGATTAGTATTTT
* * *
56147438 GTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTAT
65 GTA-TGA-A--TATT-A-TA--ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAT
* *
56147503 TTATAGTTTTGGATTAAT
122 TTATAGTTTTTGATTAGT
*
56147521 ATTTTGTATGAACATTGTAAT
1 ATTTTGTATGAATATTGTAAT
56147542 ATTGTTTGTA
Statistics
Matches: 274, Mismatches: 19, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
133 8 0.03
134 2 0.01
135 11 0.04
136 1 0.00
137 8 0.03
139 3 0.01
140 7 0.03
141 234 0.85
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.57
Consensus pattern (139 bp):
ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTGTATTTTAGTTTTTGATTAGTATTTTG
TATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTT
TTGATTAGT
Found at i:56147344 original size:61 final size:60
Alignment explanation
Indices: 56147178--56147541 Score: 369
Period size: 61 Copynumber: 6.3 Consensus size: 60
56147168 GAATATTATA
*
56147178 ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
1 ATTTTGTATGAATATTGTAATTATTTTATAATT-ATTTTGTATTTATAGTTTTGGATTAGT
*
56147239 ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAGT
1 ATTTTGTATGAATATTGTAATTATTTTATAATT-ATTTTGTATTTATAGTTTTGGATTAGT
* * *
56147300 ATTTTGTATGAATATTGTAATT-TTGTATGAA-TA--TTGTAATTAT--TTTAT-AATTA--
1 ATTTTGTATGAATATTGTAATTATTTTAT-AATTATTTTGTATTTATAGTTT-TGGATTAGT
* * * * * *
56147353 ATTTTG--T--AT-TTGTAGTT-TTTGATTAGTATTTTGTA-TGA-A-TATT--A-TA--
1 ATTTTGTATGAATATTGTAATTATTTTATAATTATTTTGTATTTATAGTTTTGGATTAGT
* *
56147399 ATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
1 ATTTTGTATGAATATTGTAATTATTTTATAATT-ATTTTGTATTTATAGTTTTGGATTAGT
* *
56147460 ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAAT
1 ATTTTGTATGAATATTGTAATTATTTTATAATT-ATTTTGTATTTATAGTTTTGGATTAGT
*
56147521 ATTTTGTATGAACATTGTAAT
1 ATTTTGTATGAATATTGTAAT
56147542 ATTGTTTGTA
Statistics
Matches: 259, Mismatches: 23, Indels: 42
0.80 0.07 0.13
Matches are distributed among these distances:
46 8 0.03
47 2 0.01
48 15 0.06
49 6 0.02
50 7 0.03
51 8 0.03
52 6 0.02
53 14 0.05
54 2 0.01
55 8 0.03
56 4 0.02
57 9 0.03
58 1 0.00
59 3 0.01
60 6 0.02
61 160 0.62
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.56
Consensus pattern (60 bp):
ATTTTGTATGAATATTGTAATTATTTTATAATTATTTTGTATTTATAGTTTTGGATTAGT
Found at i:56147349 original size:221 final size:221
Alignment explanation
Indices: 56147075--56147581 Score: 933
Period size: 221 Copynumber: 2.3 Consensus size: 221
56147065 ATGAATATTG
* *
56147075 TAATTTTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTA
1 TAATATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTA
*
56147140 TTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTT
66 TTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTT
56147205 ATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAA
131 ATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAA
56147270 TTAATCTTGTATTTATAGTTTTGGAT
196 TTAATCTTGTATTTATAGTTTTGGAT
*
56147296 TAGTATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTA
1 TAATATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTA
56147361 TTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTT
66 TTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTT
56147426 ATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAA
131 ATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAA
56147491 TTAATCTTGTATTTATAGTTTTGGAT
196 TTAATCTTGTATTTATAGTTTTGGAT
*
56147517 TAATATTTTGTATGAACATTGTAATATTGTTTGTATGAATATTGTAATTATTTTATAATTAATTT
1 TAATATTTTGTATGAATATTGT-A-A-T-TTTGTATGAATATTGTAATTATTTTATAATTAATTT
56147582 GTTAGTAATT
Statistics
Matches: 276, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
221 237 0.86
222 1 0.00
223 1 0.00
224 1 0.00
225 36 0.13
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.57
Consensus pattern (221 bp):
TAATATTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTA
TTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTT
ATAATTAATTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAA
TTAATCTTGTATTTATAGTTTTGGAT
Found at i:56147440 original size:34 final size:33
Alignment explanation
Indices: 56147397--56147502 Score: 98
Period size: 34 Copynumber: 3.3 Consensus size: 33
56147387 ATGAATATTA
56147397 TAATTTTGTATGAATATTGTAATTAGTTTATAAT
1 TAATTTTGTATGAATATTGTAATTA-TTTATAAT
* * * * *
56147431 TAATTTTGTAT--TTATAGT--TT-TTGATTAG
1 TAATTTTGTATGAATATTGTAATTATTTATAAT
56147459 T-ATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTA-TTTATAAT
*
56147492 TAATCTTGTAT
1 TAATTTTGTAT
56147503 TTATAGTTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
27 9 0.17
28 6 0.11
29 5 0.09
30 2 0.04
31 2 0.04
32 5 0.09
33 6 0.11
34 19 0.35
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (33 bp):
TAATTTTGTATGAATATTGTAATTATTTATAAT
Found at i:56147542 original size:21 final size:21
Alignment explanation
Indices: 56147517--56147570 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 21
56147507 AGTTTTGGAT
56147517 TAATATTTTGTATGAACATTG
1 TAATATTTTGTATGAACATTG
*
56147538 TAATATTGTTTGTATGAATATTG
1 TAATA-T-TTTGTATGAACATTG
56147561 TAATTATTTT
1 TAA-TATTTT
56147571 ATAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.17
22 4 0.14
23 18 0.62
24 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.54
Consensus pattern (21 bp):
TAATATTTTGTATGAACATTG
Found at i:56147562 original size:61 final size:60
Alignment explanation
Indices: 56147399--56147567 Score: 198
Period size: 61 Copynumber: 2.8 Consensus size: 60
56147389 GAATATTATA
* * * *
56147399 ATTTTGTATGAATATTGTAAT-TAGTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
1 ATTTTGTATGAATATTGTAATATTGTTT-T-ATTAATATTGTATTTATAGTTTTGGATTAAT
* *
56147460 ATTTTGTATGAATATTGTAATTATT-TTATAATTAATCTTGTATTTATAGTTTTGGATTAAT
1 ATTTTGTATGAATATTGTAA-TATTGTT-TTATTAATATTGTATTTATAGTTTTGGATTAAT
* * *
56147521 ATTTTGTATGAACATTGTAATATTGTTTGTATGAATATTGTAATTAT
1 ATTTTGTATGAATATTGTAATATTGTTT-TATTAATATTGTATTTAT
56147568 TTTATAATTA
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
60 5 0.05
61 83 0.89
62 3 0.03
63 2 0.02
ACGTcount: A:0.31, C:0.01, G:0.13, T:0.55
Consensus pattern (60 bp):
ATTTTGTATGAATATTGTAATATTGTTTTATTAATATTGTATTTATAGTTTTGGATTAAT
Found at i:56147648 original size:56 final size:59
Alignment explanation
Indices: 56147558--56147675 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 59
56147548 TGTATGAATA
* * * *
56147558 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTATAA-TAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
56147618 TTGTAATTA-TTTA-AA-AATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
1 TTGTAATTATTTTATAATAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
56147674 TT
1 TT
56147676 AGATTAGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
56 39 0.72
58 2 0.04
59 4 0.07
60 9 0.17
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (59 bp):
TTGTAATTATTTTATAATAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:56147828 original size:15 final size:16
Alignment explanation
Indices: 56147792--56147828 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
56147782 CTCATTTAAT
56147792 TTTTATATAATGTAAC
1 TTTTATATAATGTAAC
*
56147808 TTTTATATTATGTAA-
1 TTTTATATAATGTAAC
56147823 TTTTAT
1 TTTTAT
56147829 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTTATATAATGTAAC
Found at i:56150830 original size:13 final size:13
Alignment explanation
Indices: 56150814--56150840 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56150804 CTAAATTAGT
56150814 TTTACTAACCACC
1 TTTACTAACCACC
56150827 TTTACTAACCACC
1 TTTACTAACCACC
56150840 T
1 T
56150841 GTATAACACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (13 bp):
TTTACTAACCACC
Found at i:56152411 original size:23 final size:24
Alignment explanation
Indices: 56152385--56152434 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
56152375 AAGGTTGAAC
56152385 TTTTACTGTT-TTCTTCTT-TCTTT
1 TTTTACTGTTATT-TTCTTATCTTT
* *
56152408 TTTTATTGTTATTTTTTTATCTTT
1 TTTTACTGTTATTTTCTTATCTTT
56152432 TTT
1 TTT
56152435 ACAACTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTTACTGTTATTTTCTTATCTTT
Found at i:56153123 original size:26 final size:24
Alignment explanation
Indices: 56153094--56153174 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 24
56153084 CTGTTTAGAT
56153094 TTTTTTATATTATTTCATTTAAACAG
1 TTTTTT-TATTATTT-ATTTAAACAG
* *
56153120 TTTTATTATTATTTATTTTAA-AG
1 TTTTTTTATTATTTATTTAAACAG
*
56153143 ATTTTTATGTATTATTTATATTAAACAA
1 -TTTTT-T-TATTATTTAT-TTAAACAG
56153171 TTTT
1 TTTT
56153175 AGTTTATATA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
23 2 0.04
24 10 0.22
25 9 0.20
26 15 0.33
27 8 0.18
28 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTTTTATTATTTATTTAAACAG
Found at i:56153175 original size:26 final size:26
Alignment explanation
Indices: 56153101--56153189 Score: 96
Period size: 25 Copynumber: 3.5 Consensus size: 26
56153091 GATTTTTTTA
*
56153101 TATTATTTCAT-TTAAACAGTTTTAT-
1 TATTATTT-ATATTAAACAATTTTATG
* * *
56153126 TATTATTTATTTTAAAGATTTTTATG
1 TATTATTTATATTAAACAATTTTATG
56153152 TATTATTTATATTAAACAATTTTA-G
1 TATTATTTATATTAAACAATTTTATG
*
56153177 T-TTATATATATTA
1 TATTATTTATATTA
56153190 CTCTAAGCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 13 0.23
25 22 0.39
26 21 0.38
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATTTATATTAAACAATTTTATG
Found at i:56153464 original size:19 final size:19
Alignment explanation
Indices: 56153378--56153470 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
56153368 AACTCATTTT
* *
56153378 ATGTATTATTTAGTTAAAA
1 ATGTTTTATTTATTTAAAA
*
56153397 TTGTTTTA-TTATTTAAAA
1 ATGTTTTATTTATTTAAAA
* ** **
56153415 TTGTTTTACATATCTTTTAA
1 ATGTTTTATTTAT-TTAAAA
**
56153435 ATGCAACTTATTTATTTAAAA
1 ATG--TTTTATTTATTTAAAA
56153456 ATGTTTTATTTATTT
1 ATGTTTTATTTATTT
56153471 TTCAGTTCAA
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
18 17 0.31
19 19 0.35
20 6 0.11
21 7 0.13
22 6 0.11
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
ATGTTTTATTTATTTAAAA
Found at i:56155779 original size:24 final size:25
Alignment explanation
Indices: 56155737--56155789 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
56155727 TCTTTTTGCA
* * *
56155737 TTCATTCCATTCATCTGCATTACAT
1 TTCATTACATTCATCTGCATCAAAT
*
56155762 TTCATTACATT-ATTTGCATCAAAT
1 TTCATTACATTCATCTGCATCAAAT
56155786 TTCA
1 TTCA
56155790 CGAAAGAGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.28, C:0.23, G:0.04, T:0.45
Consensus pattern (25 bp):
TTCATTACATTCATCTGCATCAAAT
Found at i:56158922 original size:137 final size:137
Alignment explanation
Indices: 56158672--56158944 Score: 530
Period size: 137 Copynumber: 2.0 Consensus size: 137
56158662 CGCCCCAGAT
56158672 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
1 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
56158737 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
66 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
56158802 GATGGAG
131 GATGGAG
56158809 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
1 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
56158874 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTT-GAGAGAACGTCGGTATTGACCA
66 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAG-GAGAACGTCGGTATTGACCA
56158938 AGATGGA
130 AGATGGA
56158945 TGGAAAGAAC
Statistics
Matches: 135, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
136 1 0.01
137 134 0.99
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (137 bp):
AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
GATGGAG
Found at i:56160076 original size:50 final size:50
Alignment explanation
Indices: 56160021--56160593 Score: 373
Period size: 50 Copynumber: 11.5 Consensus size: 50
56160011 ATCTCTTTGG
* * * * * *
56160021 CATTGCAGTGGAGCAGATTGAAGCTACAATGACGAATCTTGCTTCCCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * ** * *
56160071 CATTGCAATTGAAAAGATTGAAG-TCACAACGGTGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCT-ACGACGACGAATCTTACTTCCCCGA
** * * * * * * *
56160121 CGGTGCAGTGGAGTAGATTGAAGCTATGACGGC-AATCTTGCTTCTCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * * *
56160170 CATTGCAATTTAAAATATTGAAGCCACGACGGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
** * * *
56160220 CGGTGCAA-TGAAGCAGATTGAAGCTACGATGATGAATCTTACTTCCCCGA
1 CATTGCAATTG-AGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * * * *
56160270 TATTGCAATTTAAAAGATTGAAGGTACGAGGGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
** * * *
56160320 CGGTGCAGTGGAGAAGATTGAAGCTACGACGACGAATCTTGCTTCCCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * *
56160370 CATTGCAATTTAAAAGATTGAAGCCACGACGGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * * * * * * *
56160420 TAGTGCAGTAGAGCAGATTTAAGCTACAACGATGAATCTTGCTTCCTCAA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * *
56160470 CATTGCAATTAAGAAGATTGAAGCCATGAC-AGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGA-CGAATCTTACTTCCCCGA
** * * * * * *
56160520 CGGTGCAGTCGAGCAGATTGAAGCTACAAC-AGCAAATCTTACCTCCCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGA-CGAATCTTACTTCCCCGA
* *
56160570 CATTGCAATTAAAAAGATTGAAGC
1 CATTGCAATTGAGAAGATTGAAGC
56160594 AGCAACGGTG
Statistics
Matches: 379, Mismatches: 138, Indels: 12
0.72 0.26 0.02
Matches are distributed among these distances:
49 38 0.10
50 339 0.89
51 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (50 bp):
CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
Found at i:56160308 original size:100 final size:99
Alignment explanation
Indices: 56160024--56160593 Score: 718
Period size: 100 Copynumber: 5.7 Consensus size: 99
56160014 TCTTTGGCAT
* * * *
56160024 TGCAGTGGAGCAGATTGAAGCTACAATGACGAATCTTGCTTCCCCGACATTGCAATTGAAAAGAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
* * *
56160089 TGAAGTCACAACGGTGAATCTTACTTCCCTGGCGG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * * *
56160124 TGCAGTGGAGTAGATTGAAGCTATGACG-GCAATCTTGCTTCTCCGACATTGCAATTTAAAATAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGAG-AATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
56160188 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * *
56160223 TGCAATGAAGCAGATTGAAGCTACGATGATGAATCTTACTTCCCCGATATTGCAATTTAAAAGAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
** *
56160288 TGAAGGTACGAGGGCGAATCTTACTTCCCTGGCGG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* *
56160323 TGCAGTGGAGAAGATTGAAGCTACGACGACGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
**
56160388 TGAAGCCACGACGGCGAATCTTACTTCCCTGGTAG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * *
56160423 TGCAGT-AGAGCAGATTTAAGCTACAACGATGAATCTTGCTTCCTCAACATTGCAA-TTAAGAAG
1 TGCAGTGA-AGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAA-AAG
* *
56160486 ATTGAAGCCATGACAGCGAATCTTACTTCCCTGGCGG
63 ATTGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * *
56160523 TGCAGTCG-AGCAGATTGAAGCTACAAC-AGCAAATCTTACCTCCCCGACATTGCAATTAAAAAG
1 TGCAGT-GAAGCAGATTGAAGCTACGACGAG--AATCTTGCTTCCCCGACATTGCAATTTAAAAG
56160586 ATTGAAGC
63 ATTGAAGC
56160594 AGCAACGGTG
Statistics
Matches: 409, Mismatches: 51, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
98 2 0.00
99 91 0.22
100 312 0.76
101 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (99 bp):
TGCAGTGAAGCAGATTGAAGCTACGACGAGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATT
GAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
Found at i:56160697 original size:44 final size:44
Alignment explanation
Indices: 56160642--56160825 Score: 141
Period size: 44 Copynumber: 4.3 Consensus size: 44
56160632 CGACGAATCC
56160642 TATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCA-AGATCT
* * * *** *
56160686 TATCTCTCTGAAGTTGCAGTAGAGC-AGA-TCGCATCAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCAAGATCT
* * ** *
56160727 TATCTCCCT-AAGTAGTAGTGGAGCAGACAAAAGAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-GACATTA-AAACCAAGATCT
* *
56160770 TATCTCCCTGAAGTTGCAGTGGAACG-GATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCA-AGATCT
*
56160814 TATCTCTCTGAA
1 TATCTCCCTGAA
56160826 ATTGAAGTAG
Statistics
Matches: 105, Mismatches: 25, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
40 12 0.11
41 16 0.15
42 6 0.06
43 19 0.18
44 52 0.50
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCAAGATCT
Found at i:56160955 original size:132 final size:128
Alignment explanation
Indices: 56160642--56160957 Score: 332
Period size: 128 Copynumber: 2.4 Consensus size: 128
56160632 CGACGAATCC
** * * * * * *
56160642 TATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGCAGAACGGATTAAAACCACAGATCGTATCTCTCTGAAATTGAAGTA
* * * * **
56160707 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAAAAGAAACCAATCC
66 GAGCAGATCGCATCAAGTCTTATCCCCCGAAGTAGCAGCGGAGCAGACAAAAGAAACCAATAA
** *
56160770 TATCTCCCTGAAGTTGCAGTGGAACGGATTAAAACCACAGATCTTATCTCTCTGAAATTGAAGTA
1 TATCTCCCTGAAGTTGCAGCAGAACGGATTAAAACCACAGATCGTATCTCTCTGAAATTGAAGTA
*
56160835 GAGCAGATCGCATCCAGTCTTATCGCCCCGAAGTTA-CAGCGGAGCAGACAAAAGAAACC-ATAA
66 GAGCAGATCGCATCAAGTCTTATC-CCCCGAAG-TAGCAGCGGAGCAGACAAAAGAAACCAAT-A
56160898 A
128 A
* * * * * *
56160899 TTTCGTCCTCCTGAAGTTGCGGCAGAGCGGATTGAAGCTAC-GAGTCGTATCTCTCTGAA
1 TATC-T-C-CCTGAAGTTGCAGCAGAACGGATTAAAACCACAGA-TCGTATCTCTCTGAA
56160958 GTTGTAGTGG
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
128 85 0.53
129 30 0.19
130 3 0.02
131 3 0.02
132 39 0.24
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGCAGAACGGATTAAAACCACAGATCGTATCTCTCTGAAATTGAAGTA
GAGCAGATCGCATCAAGTCTTATCCCCCGAAGTAGCAGCGGAGCAGACAAAAGAAACCAATAA
Found at i:56162341 original size:26 final size:26
Alignment explanation
Indices: 56162276--56162364 Score: 96
Period size: 25 Copynumber: 3.5 Consensus size: 26
56162266 ATTTTTTTTA
*
56162276 TATTATTTCAT-TTAAACAGTTTTAT-
1 TATTATTT-ATATTAAACAATTTTATG
* * *
56162301 TATTATTTATTTTAAAGATTTTTATG
1 TATTATTTATATTAAACAATTTTATG
56162327 TATTATTTATATTAAACAATTTTA-G
1 TATTATTTATATTAAACAATTTTATG
*
56162352 T-TTATATATATTA
1 TATTATTTATATTA
56162365 CTCTAAGCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 13 0.23
25 22 0.39
26 21 0.38
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATTTATATTAAACAATTTTATG
Found at i:56162639 original size:19 final size:19
Alignment explanation
Indices: 56162553--56162645 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
56162543 AACTCATTTT
* *
56162553 ATGTATTATTTAGTTAAAA
1 ATGTTTTATTTATTTAAAA
*
56162572 TTGTTTTA-TTATTTAAAA
1 ATGTTTTATTTATTTAAAA
* ** **
56162590 TTGTTTTACATATCTTTTAA
1 ATGTTTTATTTAT-TTAAAA
**
56162610 ATGCAACTTATTTATTTAAAA
1 ATG--TTTTATTTATTTAAAA
56162631 ATGTTTTATTTATTT
1 ATGTTTTATTTATTT
56162646 TTCGTTTCAA
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
18 17 0.31
19 19 0.35
20 6 0.11
21 7 0.13
22 6 0.11
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
ATGTTTTATTTATTTAAAA
Found at i:56165425 original size:147 final size:149
Alignment explanation
Indices: 56165159--56165509 Score: 485
Period size: 147 Copynumber: 2.3 Consensus size: 149
56165149 AACATGTTCG
* * * *
56165159 TATTTCAGCCATTTGTTCGTA-TTTTTCCCCGATTTTATTACTTTAAAAAATATACTATTTTCTA
1 TATTTCGGCCATTTGTTCGTATTTTTTTCCAGATTTTATTACTTTAAAAAA-ATACTATTTTATA
* * *
56165223 TTTTTATTATTTTATATTATTTTAGTACATTATATTTGAAATGTATTCATTTAGTGTGTTTTTT-
65 ATTTTATTATTTTACATTATTTTAGTACATTATATTTAAAATGTATTCATTTAGTGTGTTTTTTA
*
56165287 ATTAAA-AT-AAAAAACCCT
130 AATAAATATAAAAAAACCCT
* *
56165305 TATTTCGGCCATTTCTTCGTATTTTTTTCCAAGATTTTATTACTTTAAAAAAATATTATTTTATA
1 TATTTCGGCCATTTGTTCGTATTTTTTTCC-AGATTTTATTACTTTAAAAAAATACTATTTTATA
*
56165370 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTAAAATGTATTCATTTAGTGTGTTTTTTA
65 ATTTTATTATTTTACATTATTTTAGTACATTATATTTAAAATGTATTCATTTAGTGTGTTTTTTA
* *
56165435 AATAAATTTAAAAAAATCCT
130 AATAAATATAAAAAAACCCT
* * *
56165455 TATTTCGGCCCTTTGTTCGTATTTTTTTACCGGATTCTATTACTTTCAATAAAAA
1 TATTTCGGCCATTTGTTCGTATTTTTTT-CCAGATTTTATTACTTT-AA-AAAAA
56165510 ACACACTAAA
Statistics
Matches: 180, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
146 19 0.11
147 78 0.43
148 25 0.14
149 1 0.01
150 48 0.27
151 4 0.02
152 5 0.03
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.51
Consensus pattern (149 bp):
TATTTCGGCCATTTGTTCGTATTTTTTTCCAGATTTTATTACTTTAAAAAAATACTATTTTATAA
TTTTATTATTTTACATTATTTTAGTACATTATATTTAAAATGTATTCATTTAGTGTGTTTTTTAA
ATAAATATAAAAAAACCCT
Found at i:56166631 original size:22 final size:22
Alignment explanation
Indices: 56166606--56166715 Score: 168
Period size: 22 Copynumber: 5.0 Consensus size: 22
56166596 AAATTCAATA
56166606 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
56166628 TCAA-TTCCTTTCAAAAATTCTC
1 TCAATTTCC-TTCAAAAATTCTC
* *
56166650 TCAATTCCCTTCAAAATTTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
56166672 TCAATTTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
56166694 TCAATTTCCTTCAAAAAATCTC
1 TCAATTTCCTTCAAAAATTCTC
56166716 CAAATCCATA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.05
22 72 0.91
23 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:56166816 original size:30 final size:30
Alignment explanation
Indices: 56166752--56166808 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 30
56166742 ATTAAATTTC
56166752 ATTTTTTTAAAGAAAATTTTAAAATTTTTT
1 ATTTTTTTAAAGAAAATTTTAAAATTTTTT
*
56166782 ATTTTTTT-AA-ATAATTTTAAAATTTTT
1 ATTTTTTTAAAGAAAATTTTAAAATTTTT
56166809 AATATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 16 0.62
29 2 0.08
30 8 0.31
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTTTTTAAAGAAAATTTTAAAATTTTTT
Found at i:56166936 original size:14 final size:15
Alignment explanation
Indices: 56166907--56166940 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
56166897 AAATTTTAAA
56166907 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
56166922 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
56166936 TTTTA
1 TTTTA
56166941 GATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:56168600 original size:18 final size:18
Alignment explanation
Indices: 56168567--56168601 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
56168557 AGGTATGTTT
* *
56168567 CCTAACCCTTATATGTAC
1 CCTAACCCGTACATGTAC
56168585 CCTAACCCGTACATGTA
1 CCTAACCCGTACATGTA
56168602 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (18 bp):
CCTAACCCGTACATGTAC
Found at i:56169319 original size:126 final size:125
Alignment explanation
Indices: 56169084--56169752 Score: 682
Period size: 126 Copynumber: 5.3 Consensus size: 125
56169074 ACATTATTTG
* * *
56169084 ATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT-ACTTAATTAAAAACCCT
1 ATTAAAAACCCTAA-CCTAACTTAATTAAATTAAAAA-CCTAA-CATAACTTAATTAAAAACCCT
* * * *
56169148 AACCCTAACCTAATTTAATTAAA----AACCCTAACCTAATTCAATTAAAAACCCTAACATAACT
63 AA-CATAACTTAA-TTAA--AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAACT
56169209 TA
124 TA
*
56169211 ATTAAAAAACCTAACCTAACTTAATTAAATTAAAAACCCTAACATAACTTAATTAAAAACCCTAA
1 ATTAAAAACCCTAACCTAACTTAATTAAATTAAAAA-CCTAACATAACTTAATTAAAAACCCTAA
* *
56169276 CCCT-ACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAAATTA
65 -CATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAACTTA
* * *
56169337 ATTAAAAACCCTAACATAACTTAATTAAA--AACCCTAACCTAACTTAA-TTAAATTAAAAACCC
1 ATTAAAAACCCTAACCTAACTTAATTAAATTAA---AAACCTAACATAACTT-AATTAAAAACCC
* *
56169399 TAACATAACTTAATTAAAAACCCTAACCCTAATCTAATTTAATTAAAAACCCTAACCTAATTTA
62 TAACATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAACTTA
* *
56169463 ATTAAAAACCCTAACATAACTTAATTAAA--AAACCTAACCTAACTTAA-TTAAATTAAAAACCC
1 ATTAAAAACCCTAACCTAACTTAATTAAATTAAA---AACCTAACATAACTT-AATTAAAAACCC
* * *
56169525 TAACATAATTTAATT-AAAACCCTAACCCT-ACTTAA-TTAA--AAACCCTAACCCTAACCTAAT
62 TAACATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAA----AACCCTAACCTAAC
56169585 TTA
123 TTA
*
56169588 ATTAAAAACCCTAACCTAA--T--TT-AATTAAAAACCCTAACATAACTTAATTAAAAATCCTAA
1 ATTAAAAACCCTAACCTAACTTAATTAAATTAAAAA-CCTAACATAACTTAATTAAAAACCCTAA
* ** *
56169648 CATAACTTAATTAAAAACCCTAA-GCTAATTTAATTTAATTAAAAACCCTAACCCTAACCTA
65 CATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA-CCTAACTTA
* *
56169709 ATTTAATTGAAATCCCTAACCTAACCTAATTTAATTAAAAACCT
1 A-TTAA---AAA-CCCTAACCTAACTTAATTAAATTAAAAACCT
56169753 CAACCCTAAC
Statistics
Matches: 478, Mismatches: 27, Indels: 71
0.83 0.05 0.12
Matches are distributed among these distances:
119 2 0.00
120 46 0.10
121 30 0.06
122 14 0.03
123 5 0.01
124 13 0.03
125 63 0.13
126 275 0.58
127 15 0.03
128 1 0.00
130 5 0.01
131 9 0.02
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.28
Consensus pattern (125 bp):
ATTAAAAACCCTAACCTAACTTAATTAAATTAAAAACCTAACATAACTTAATTAAAAACCCTAAC
ATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTAACTTA
Found at i:56169340 original size:149 final size:147
Alignment explanation
Indices: 56169096--56169699 Score: 814
Period size: 149 Copynumber: 4.1 Consensus size: 147
56169086 TAAAAACCCT
* *
56169096 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTACTTAA-TTAA-AAACCCTAACCCTAACCT
1 AACCCTAACATAACTTAATTAAAAACCCTAACCCTACTTAATTTAATAAA----AACCCTAACCT
*
56169159 AATTTAATTAAAAACCCTAACCT-AATTCAATTAAAAACCCTAACATAACTTAATTAAAAAACCT
62 AATTTAATTAAAAACCCTAACATAAATT-AATTAAAAACCCTAACATAACTTAATTAAAAAACCT
56169223 AACCTAACTTAATTAAATTAAA
126 AACCTAACTTAATTAAATTAAA
56169245 AACCCTAACATAACTTAATTAAAAACCCTAACCCTACTTAA-TTAA-AAACCCTAACCCTAACCT
1 AACCCTAACATAACTTAATTAAAAACCCTAACCCTACTTAATTTAATAAA----AACCCTAACCT
* *
56169308 AATTTAATTAAAAACCCTAACCTAAATTAATTAAAAACCCTAACATAACTTAATTAAAAACCCTA
62 AATTTAATTAAAAACCCTAACATAAATTAATTAAAAACCCTAACATAACTTAATTAAAAAACCTA
56169373 ACCTAACTTAATTAAATTAAA
127 ACCTAACTTAATTAAATTAAA
*
56169394 AACCCTAACATAACTTAATTAAAAACCCTAACCCTAATCTAATTTAATTAAAAACCCTAACCTAA
1 AACCCTAACATAACTTAATTAAAAACCCTAACCCTACT-TAATTTAA-TAAAAACCCTAACCTAA
* * *
56169459 TTTAATTAAAAACCCTAACATAACTTAATTAAAAAACCTAACCTAACTTAATTAAATTAAA---A
64 TTTAATTAAAAACCCTAACATAAATTAATTAAAAACCCTAACATAACTTAATTAAA--AAACCTA
* *
56169521 ACCCTAACATAATTTAATT-AA
127 A-CCTAACTTAATTAAATTAAA
* *
56169542 AACCCTAACCCT-ACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTA
1 AACCCTAA-CATAACTTAATTAAAAACCCTAACCCT-ACTTAATTTAA-TAAAAACCCTAACCTA
* * *
56169606 ATTTAATTAAAAACCCTAACATAACTTAATTAAAAATCCTAACATAACTTAATTAAAAACCCTAA
63 ATTTAATTAAAAACCCTAACATAAATTAATTAAAAACCCTAACATAACTTAATTAAAAAACCTAA
* * *
56169671 GCTAATTTAATTTAATTAAA
128 CCTAACTTAATTAAATTAAA
56169691 AACCCTAAC
1 AACCCTAAC
56169700 CCTAACCTAA
Statistics
Matches: 421, Mismatches: 20, Indels: 29
0.90 0.04 0.06
Matches are distributed among these distances:
146 2 0.00
148 130 0.31
149 273 0.65
150 7 0.02
151 6 0.01
153 3 0.01
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (147 bp):
AACCCTAACATAACTTAATTAAAAACCCTAACCCTACTTAATTTAATAAAAACCCTAACCTAATT
TAATTAAAAACCCTAACATAAATTAATTAAAAACCCTAACATAACTTAATTAAAAAACCTAACCT
AACTTAATTAAATTAAA
Found at i:56169698 original size:23 final size:23
Alignment explanation
Indices: 56169096--56169682 Score: 552
Period size: 23 Copynumber: 23.9 Consensus size: 23
56169086 TAAAAACCCT
56169096 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
56169119 AACCCTAACCCT-ACTTAATTAAAAA
1 AACCCTAA-CCTAATTTAATT--AAA
56169144 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
56169171 AACCCTAACCTAATTCAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
56169194 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
56169217 AAACCTAACCTAACTTAATTAAATTAAA
1 AACCCTAACCTAA--T--TT-AATTAAA
* *
56169245 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
56169268 AACCCTAACCCT-ACTTAATTAAAAA
1 AACCCTAA-CCTAATTTAATT--AAA
56169293 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
56169320 AACCCTAACCTAAATTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
56169343 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
56169366 AACCCTAACCTAACTTAATTAAATTAAA
1 AACCCTAACCTAA--T--TT-AATTAAA
* *
56169394 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
56169417 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAA--C----CTAATTTAATTAAA
56169446 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
56169469 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
56169492 AAACCTAACCTAACTTAATTAAATTAAA
1 AACCCTAACCTAA--T--TT-AATTAAA
*
56169520 AACCCTAACATAATTTAATT-AA
1 AACCCTAACCTAATTTAATTAAA
*
56169542 AACCCTAACCCT-ACTTAATTAAAAA
1 AACCCTAA-CCTAATTTAATT--AAA
56169567 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
56169594 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
56169617 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* * *
56169640 AATCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
56169663 AACCCTAAGCTAATTTAATT
1 AACCCTAACCTAATTTAATT
56169683 TAATTAAAAA
Statistics
Matches: 478, Mismatches: 40, Indels: 92
0.78 0.07 0.15
Matches are distributed among these distances:
22 17 0.04
23 295 0.62
24 11 0.02
25 9 0.02
26 1 0.00
27 16 0.03
28 64 0.13
29 65 0.14
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (23 bp):
AACCCTAACCTAATTTAATTAAA
Found at i:56169816 original size:58 final size:58
Alignment explanation
Indices: 56169681--56169892 Score: 236
Period size: 58 Copynumber: 3.6 Consensus size: 58
56169671 GCTAATTTAA
* * * *
56169681 TTTAATTAAAAACCCTAACCCTAACCTAATTTAATTGAAATCCCTAA-CCTAACCTAA
1 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAACCTTAACCCTAACCTAT
* *
56169738 TTTAATTAAAA-ACCTCAACCCTAACCTATTTTACA-TGAAAACCTTAACCCTAACCTAT
1 TTTAATTAAAATCCCT-AACCCTAACCTAATTTA-ATTGAAAACCTTAACCCTAACCTAT
* *
56169796 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTCTT-ACCCTGATTTATC-AT
1 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAAC-CTTAACCCT-A---ACCTAT
* *
56169857 TTTATTTGAAATCCCTAACCCTAACCTAATTTAATT
1 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATT
56169893 AATGTAAAAA
Statistics
Matches: 134, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
56 3 0.02
57 38 0.28
58 48 0.36
59 7 0.05
61 36 0.27
62 2 0.01
ACGTcount: A:0.39, C:0.25, G:0.02, T:0.34
Consensus pattern (58 bp):
TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAACCTTAACCCTAACCTAT
Found at i:56173349 original size:124 final size:125
Alignment explanation
Indices: 56173113--56173378 Score: 383
Period size: 124 Copynumber: 2.1 Consensus size: 125
56173103 CCACGAGGGC
56173113 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* * * * **
56173178 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCACGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* * * *
56173238 GCGATTTTATACTATTTGCTCAGAAAACGTC-AACAAAAATTATTTCTTACATGACC-ACTGTAG
1 GCGATTTGACACTATTTGCTCAG-AAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAG
* *
56173301 CGAAATCACGTCCACGAGGCCACTATTTCACAATTTCTTCTGAAATAGCATCCTGGTAGAA
65 CGAAATCACGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
**
56173362 GCGATTTCCCACTATTT
1 GCGATTTGACACTATTT
56173379 AACCAGATAC
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
124 74 0.59
125 44 0.35
126 7 0.06
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (125 bp):
GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
GAAATCACGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:56173743 original size:33 final size:32
Alignment explanation
Indices: 56173661--56173743 Score: 78
Period size: 33 Copynumber: 2.5 Consensus size: 32
56173651 TAGCCTAAAG
*
56173661 AGCTGAAGTTGAAAAAAAAAACTGATAAAAAAA
1 AGCTG-AGTTAAAAAAAAAAACTGATAAAAAAA
* * **
56173694 AGCT-AATGAAAGAAAAAAAAACTGATGGAAAAA
1 AGCTGAGT-TAA-AAAAAAAAACTGATAAAAAAA
56173727 AGCTGGAGTTAAAAAAA
1 AGCT-GAGTTAAAAAAA
56173744 GAAGCTTGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
31 2 0.05
32 1 0.03
33 32 0.82
34 2 0.05
35 2 0.05
ACGTcount: A:0.61, C:0.06, G:0.18, T:0.14
Consensus pattern (32 bp):
AGCTGAGTTAAAAAAAAAAACTGATAAAAAAA
Found at i:56174440 original size:18 final size:18
Alignment explanation
Indices: 56174419--56174455 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
56174409 ATTATTTAAA
*
56174419 TATCATTCATTATTATAT
1 TATCATTCATTAGTATAT
*
56174437 TATCATTTATTAGTATAT
1 TATCATTCATTAGTATAT
56174455 T
1 T
56174456 TAAGTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (18 bp):
TATCATTCATTAGTATAT
Found at i:56180085 original size:3 final size:3
Alignment explanation
Indices: 56180052--56180226 Score: 78
Period size: 3 Copynumber: 58.0 Consensus size: 3
56180042 ATACCTTTGC
* **
56180052 TAT T-T TAT CAT TAT T-T T-T TAT TAT TGG TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* ** * * * *
56180094 TAT TAT TAT TAT TAT TAA CGT CAT CAT TAC TA- TAA TAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * *
56180141 TAT TACT T-T TATT TAC CAT TAT T-T TGT TAT TAT TAA TAT TAT TAT
1 TAT TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
56180186 TAC TAT TATT TATT TATT TAT TAT TAT TATT TATT TAT TAT
1 TAT TAT TA-T TA-T TA-T TAT TAT TAT TA-T TA-T TAT TAT
56180227 ACTTTTTTTT
Statistics
Matches: 136, Mismatches: 23, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
2 14 0.10
3 97 0.71
4 25 0.18
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:56180312 original size:18 final size:18
Alignment explanation
Indices: 56180272--56180312 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
56180262 GCAGTTGTAT
*
56180272 ATATA-TTTTTATAATAT
1 ATATACTTTTTATAATAC
*
56180289 ACATACTTTTTATAATAC
1 ATATACTTTTTATAATAC
56180307 ATATAC
1 ATATAC
56180313 ACGTACATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATACTTTTTATAATAC
Found at i:56184575 original size:6 final size:6
Alignment explanation
Indices: 56184566--56184684 Score: 59
Period size: 6 Copynumber: 19.8 Consensus size: 6
56184556 AAGAAAAAGA
* * * * *
56184566 AAAATC AAAATC AAAGTC AAAATG AAAATG AAAATG AAAATGAA AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT--C AAAATC
* **
56184616 AAAAATC AAAAT- AAAA-A AAAAGA AGAAAT- AAGAA-- AAAATC AAAATC
1 -AAAATC AAAATC AAAATC AAAATC A-AAATC AA-AATC AAAATC AAAATC
* * *
56184662 AAGATC AAAATG AAAATG AAAAT
1 AAAATC AAAATC AAAATC AAAAT
56184685 GAGAAAAAGA
Statistics
Matches: 95, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
4 2 0.02
5 11 0.12
6 68 0.72
7 9 0.09
8 5 0.05
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:56184627 original size:33 final size:32
Alignment explanation
Indices: 56184582--56184683 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 32
56184572 AAAATCAAAG
* *
56184582 TCAAAATGAAAATGAAAATGAAAATGAAAAAA
1 TCAAAATCAAAATAAAAATGAAAATGAAAAAA
*
56184614 TCAAAAATCAAAATAAAAAAAAAGAAGAAATAAGAAAAAA
1 TC-AAAATCAAAAT---AAAAATG-A-AAAT--GAAAAAA
* *
56184654 TCAAAATCAAGATCAAAATGAAAATGAAAA
1 TCAAAATCAAAATAAAAATGAAAATGAAAA
56184684 TGAGAAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
32 7 0.12
33 10 0.18
34 4 0.07
35 1 0.02
36 10 0.18
37 1 0.02
38 4 0.07
39 10 0.18
40 9 0.16
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.14
Consensus pattern (32 bp):
TCAAAATCAAAATAAAAATGAAAATGAAAAAA
Found at i:56184665 original size:17 final size:16
Alignment explanation
Indices: 56184616--56184665 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
56184606 TGAAAAAATC
*
56184616 AAAAATCAAAATAAAA
1 AAAAATCAAAATAAGA
**
56184632 AAAAAGAAGAAATAAGA
1 AAAAATCA-AAATAAGA
56184649 AAAAATCAAAATCAAGA
1 AAAAATCAAAAT-AAGA
56184666 TCAAAATGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.76, C:0.06, G:0.08, T:0.10
Consensus pattern (16 bp):
AAAAATCAAAATAAGA
Found at i:56185638 original size:7 final size:7
Alignment explanation
Indices: 56185621--56185680 Score: 65
Period size: 6 Copynumber: 9.0 Consensus size: 7
56185611 TGAGTCAAAA
56185621 AAAAATG
1 AAAAATG
56185628 -AAAATG
1 AAAAATG
56185634 AAAAAATG
1 -AAAAATG
*
56185642 -AAATTG
1 AAAAATG
*
56185648 -AAATTG
1 AAAAATG
56185654 -AAAATG
1 AAAAATG
56185660 AAAAATG
1 AAAAATG
56185667 AAAAATG
1 AAAAATG
56185674 AAAAATG
1 AAAAATG
56185681 GAGAGGCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
6 22 0.46
7 20 0.42
8 6 0.12
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (7 bp):
AAAAATG
Found at i:56185675 original size:26 final size:26
Alignment explanation
Indices: 56185626--56185676 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
56185616 CAAAAAAAAA
*
56185626 TGAAAATGAAAAAATGAAATTGAAAT
1 TGAAAATGAAAAAATGAAAATGAAAT
56185652 TGAAAATG-AAAAATGAAAAATGAAA
1 TGAAAATGAAAAAATG-AAAATGAAA
56185677 AATGGAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.20
Consensus pattern (26 bp):
TGAAAATGAAAAAATGAAAATGAAAT
Found at i:56185679 original size:14 final size:13
Alignment explanation
Indices: 56185621--56185680 Score: 77
Period size: 14 Copynumber: 4.5 Consensus size: 13
56185611 TGAGTCAAAA
56185621 AAAAATGAAAATG
1 AAAAATGAAAATG
*
56185634 AAAAAATGAAATTG
1 -AAAAATGAAAATG
*
56185648 -AAATTGAAAATG
1 AAAAATGAAAATG
56185660 AAAAATGAAAAATG
1 AAAAATG-AAAATG
56185674 AAAAATG
1 AAAAATG
56185681 GAGAGGCTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
12 10 0.25
13 5 0.12
14 25 0.62
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (13 bp):
AAAAATGAAAATG
Found at i:56185749 original size:8 final size:7
Alignment explanation
Indices: 56185726--56185759 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
56185716 GAGTCGGGAA
56185726 AAAAATG
1 AAAAATG
56185733 -AAAATG
1 AAAAATG
56185739 AAAAATG
1 AAAAATG
*
56185746 GAAAATG
1 AAAAATG
56185753 AAAAATG
1 AAAAATG
56185760 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:56185749 original size:14 final size:14
Alignment explanation
Indices: 56185726--56185761 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
56185716 GAGTCGGGAA
56185726 AAAAAT-GAAAATG
1 AAAAATGGAAAATG
56185739 AAAAATGGAAAATG
1 AAAAATGGAAAATG
56185753 AAAAATGGA
1 AAAAATGGA
56185762 GAGGCTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (14 bp):
AAAAATGGAAAATG
Found at i:56187042 original size:46 final size:45
Alignment explanation
Indices: 56186975--56187583 Score: 395
Period size: 46 Copynumber: 13.8 Consensus size: 45
56186965 ATTATACAGG
*
56186975 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * * *
56187021 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAG-AATTCAGA
* * *
56187065 TCTTATCTCCCTG-GGATTACAGCGGAGTAGATTGAAGATAGT-A-A
1 TCTTATCTCCCTGAGG-TTACAGTGGAGTAGATCGAAGA-ATTCAGA
* * * ** ** *
56187109 TCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAAGAA---GGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGA-TCGAAGAATTCAGA
* * * * ** * *
56187152 TCTTATCTCTCTAAAGTTGCAGCAGAGTAGATC---GTA-TCAGG
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
*
56187193 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * ****
56187239 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CCGGAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
* * * *
56187283 TCTTATTTCCCTGAGATTACAGCGGAGTAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCA-GA
* * * * ** * **
56187326 TCCTATCTCTCTGAAGTTATAGTGGAGCGGAT-TAA-AATAAAAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAAT-TCAGA
* * ** *
56187370 TCTTATCTCTCTGAAGTTACAGCAGAGTAGATC---GCA-TCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
* *
56187411 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * *
56187457 TCTTATCTCTCTAAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * *
56187503 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG---CCAGGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCA-GA
* * * *
56187546 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGA
56187584 CACTATCCTA
Statistics
Matches: 440, Mismatches: 94, Indels: 60
0.74 0.16 0.10
Matches are distributed among these distances:
39 2 0.00
41 58 0.13
42 7 0.02
43 85 0.19
44 127 0.29
45 8 0.02
46 152 0.35
47 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
Found at i:56187335 original size:174 final size:172
Alignment explanation
Indices: 56187016--56187343 Score: 367
Period size: 174 Copynumber: 1.9 Consensus size: 172
56187006 CCGAAGAATT
** * *
56187016 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGGGA
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGCAACAGATCTTATCTCCCTGGGA
* * * * * *
56187081 TTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAA
66 TTACAGCGGAGCAGATTGAAGACAGGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAA
* *
56187146 GAAGGATCTTATCTCTCTAAAGTTGCAGCAGAGTAGATCGTA
131 GAACGATCCTATCTCTCTAAAGTTGCAGCAGAGTAGATCGTA
* *
56187188 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTG
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGCAA---CAGATCTTATCTCCCTG
* * * * *
56187252 AGG-TTACAGTGGAGCAGATTGAAG-CCGGAGATCTTATTTCCCTGAGATTACAGCGGAGTAGA-
63 -GGATTACAGCGGAGCAGATTGAAGACAGGA-ATCCTATCTCCCTGAGATTACAGCGGAGCAGAT
** * *
56187314 TCGAAGACACTATCCTATCTCTCTGAAGTT
126 TAAAAGA-ACGATCCTATCTCTCTAAAGTT
56187344 ATAGTGGAGC
Statistics
Matches: 127, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
171 1 0.01
172 38 0.30
173 7 0.06
174 79 0.62
175 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (172 bp):
TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGCAACAGATCTTATCTCCCTGGGA
TTACAGCGGAGCAGATTGAAGACAGGAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAA
GAACGATCCTATCTCTCTAAAGTTGCAGCAGAGTAGATCGTA
Found at i:56187374 original size:218 final size:218
Alignment explanation
Indices: 56186971--56187573 Score: 854
Period size: 218 Copynumber: 2.8 Consensus size: 218
56186961 GTTCATTATA
56186971 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* *
56187036 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGGGATTACAGCGGAGTAGATTGAA
66 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAA
* * * *
56187101 GATAGTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAAGAAGGATCTTATCTCTCTAA
131 GACACTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAAAAAAGATCTTATCTCTCTAA
* *
56187166 AGTTGCAGCAGAGTAGATCGTAT
196 AGTTACAGCAGAGTAGATCGCAT
56187189 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* *
56187254 GTTACAGTGGAGCAGATTGAAGCCGGAGATCTTATTTCCCTGAGATTACAGCGGAGTAGATCGAA
66 GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAA
*
56187319 GACACT-ATCCTATCTCTCTGA-AGTTATAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCT
131 GACACTAATCCTATCTCTCTGAGA-TTACAGTGGAGCGGATTAAAA-AAAAGATCTTATCTCTCT
*
56187382 GAAGTTACAGCAGAGTAGATCGCAT
194 AAAGTTACAGCAGAGTAGATCGCAT
* * * *
56187407 CAGATCTTATCTCCCTGAGGTTACAGTGGAGTAGACCAAAGAATTTCAGATCTTATCTCTCTAAG
1 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* ** * * * * * *
56187472 GTTACAGTGGAGTAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT
66 GTTACAGTGGAGCAGATTGAAGCCA---GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATC
* ** * * *
56187536 GAAGCCA-GGATCTTATCTCCCTGAGATTACAGCGGAGC
128 GAAGACACTAATCCTATCTCTCTGAGATTACAGTGGAGC
56187574 AGATCCAAGA
Statistics
Matches: 345, Mismatches: 33, Indels: 12
0.88 0.08 0.03
Matches are distributed among these distances:
216 1 0.00
217 35 0.10
218 248 0.72
220 60 0.17
221 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (218 bp):
CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
GTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAA
GACACTAATCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAAAAAAGATCTTATCTCTCTAA
AGTTACAGCAGAGTAGATCGCAT
Found at i:56187390 original size:87 final size:87
Alignment explanation
Indices: 56187193--56187640 Score: 332
Period size: 87 Copynumber: 5.1 Consensus size: 87
56187183 TCGTATCAGG
* * * * *
56187193 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACA---C-GATCCTATCTCCCTGAAGTT
* *****
56187257 ACAGTGGAGCAGATTGAAGCCGGAGA
62 ACAGTGGAGCAGATTAAAATAAAAGA
* * * *
56187283 TCTTATTTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCTCTGAAGTTATAG
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACAG
*
56187348 TGGAGCGGATTAAAATAAAAGA
66 TGGAGCAGATTAAAATAAAAGA
* * * * * *
56187370 TCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCA-TCA-GATCTTATCTCCCTGAGGTTACA
1 TCTTATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACA
* ** ***
56187432 GTGGAGTAGACCAAAGAATTTCAGA
65 GTGGAGCAGA-TTAA-AATAAAAGA
* * * * * * *
56187457 TCTTATCTCTCTAAGGTTACAGTGGAGTAGACCGAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACA---C-GATCCTATCTCCCTGAAGTT
* *** *
56187521 ACAGTGGAGCAGATT-GAAGCCAGGA
62 ACAGTGGAGCAGATTAAAATAAAAGA
* * * *
56187546 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGACACTATCCTATCTTCCTGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACAG
* * *
56187611 GGGAGCGGATTAAAATAAAGGA
66 TGGAGCAGATTAAAATAAAAGA
56187633 TCTTATCT
1 TCTTATCT
56187641 GCGGAATAAA
Statistics
Matches: 279, Mismatches: 66, Indels: 29
0.75 0.18 0.08
Matches are distributed among these distances:
85 26 0.09
86 34 0.12
87 115 0.41
88 1 0.00
89 35 0.13
90 35 0.13
91 1 0.00
92 32 0.11
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (87 bp):
TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACAG
TGGAGCAGATTAAAATAAAAGA
Found at i:56187596 original size:43 final size:43
Alignment explanation
Indices: 56187501--56187616 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
56187491 AAGAATTTCA
* * * ** * *
56187501 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 GATCCTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGACAC
*
56187544 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGACAC
1 GATCCTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGACAC
* * *
56187587 TATCCTATCTTCCTGA-AGTTACAGGGGAGC
1 GATCCTATCTCCCTGAGA-TTACAGCGGAGC
56187617 GGATTAAAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (43 bp):
GATCCTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGACAC
Found at i:56187651 original size:26 final size:26
Alignment explanation
Indices: 56187615--56187666 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
56187605 TTACAGGGGA
*
56187615 GCGGATTAAAATAAAGGATCTTATCT
1 GCGGAATAAAATAAAGGATCTTATCT
56187641 GCGGAATAAAATAAAGGATCTTATCT
1 GCGGAATAAAATAAAGGATCTTATCT
56187667 CTCTAAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (26 bp):
GCGGAATAAAATAAAGGATCTTATCT
Found at i:56187867 original size:46 final size:45
Alignment explanation
Indices: 56187792--56188290 Score: 218
Period size: 44 Copynumber: 11.4 Consensus size: 45
56187782 AGTAGATCAC
* * * *
56187792 ATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-CGAAAAAT
* * *
56187838 TTCAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAAAT
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
* * * * * **
56187883 ACCA-ATCGTGTCTCCCTGAAGTTGCAGTGGAGTGGATGAAAACG
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
* * * * ****
56187927 ATGA-ATCATATACT-TCTGAAGTTGCAGT--AG--GTCGAATTGG
1 ATCAGATCTTAT-CTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
* * * ** *
56187967 ATCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTG-AAGAT
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTA-GACGAAAAAT
* * ** **
56188012 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
* * *
56188056 A-CAGATCTTATCTCTCTGAAGTTGCAGT--AG-AG-C--AGATT
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
* * ** * *
56188094 GCATCAGGTCTTATCTCCCTGAGGTTATAGTGGAGCAGATGAAAGAA-
1 --ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAA-AAT
* * * ** **
56188141 ATCA-ATCCTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACC
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
* * * * *
56188185 A-CAGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCG-----C
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-CGAAAAAT
* * * *
56188225 ATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAAT
1 ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-CGAAAAAT
*
56188271 TTCAGATCTTATCTCCCTGA
1 ATCAGATCTTATCTCCCTGA
56188291 GGCTACAGTG
Statistics
Matches: 340, Mismatches: 85, Indels: 56
0.71 0.18 0.12
Matches are distributed among these distances:
38 2 0.01
40 13 0.04
41 73 0.21
42 4 0.01
43 9 0.03
44 168 0.49
45 17 0.05
46 52 0.15
47 1 0.00
48 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
ATCAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGAAAAAT
Found at i:56187989 original size:129 final size:129
Alignment explanation
Indices: 56187845--56188257 Score: 426
Period size: 129 Copynumber: 3.2 Consensus size: 129
56187835 AATTTCAGAT
* * * *
56187845 CTTATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAAATACCAATCGTGTCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAAATACCAATCCTATCTCCCTGAAGTTGCAG
* * *
56187910 TGGAGTGGATGAAAACGA-TGAATCATATACT-TCTGAAGTTGCAGTAG-GTC-GAATTGGATCA
66 TGGAGTGGATGAAAACCACAG-ATCATAT-CTCTCTGAAGTTGCAGTAGAG-CAG-ATTGCATCA
56187971 AAC
127 AAC
* * * *
56187974 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTG-AAGATACAAATCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATGAAAAATACCAATCCTATCTCCCTGAAGTTGCA
* * ***
56188038 GTGGAGTGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAGGT
65 GTGGAGTGGATGAAAACCACAGATCATATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAAAC
* ** *
56188103 CTTATCTCCCTGAGGTTATAGTGGAGCAGATGAAAGAA-ATCAATCCTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAA-AATACCAATCCTATCTCCCTGAAGTTGCA
* ** * * * * **
56188167 ATGGAGCAGATTAAAACCACAGATC-TCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 GTGGAGTGGATGAAAACCACAGATCAT-ATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAAA
*
56188231 T
129 C
* *
56188232 CTTATCTCCCTGAGGTTACAGTGGAG
1 CTTATCTCCCTGAAGTTGCAGTGGAG
56188258 TAGACCGAAG
Statistics
Matches: 246, Mismatches: 30, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
128 6 0.02
129 234 0.95
130 6 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (129 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAAATACCAATCCTATCTCCCTGAAGTTGCAG
TGGAGTGGATGAAAACCACAGATCATATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAAAC
Found at i:56188269 original size:129 final size:128
Alignment explanation
Indices: 56187974--56188290 Score: 429
Period size: 129 Copynumber: 2.4 Consensus size: 128
56187964 TGGATCAAAC
* * * *
56187974 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAGGTTACAGTGGAGCA-GATGAAGAAATC-AATCTTATCTCCCTGAAGTTGCA
* ** * * *
56188038 GTGGAGTGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAGGT
64 ATGGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAGGT
* *
56188103 CTTATCTCCCTGAGGTTATAGTGGAGCAGATGAAAGAAATCAATCCTATCTCCCTGAAGTTGCAA
1 CTTATCTCCCTGAGGTTACAGTGGAGCAGATG-AAGAAATCAATCTTATCTCCCTGAAGTTGCAA
*
56188168 TGGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGT
65 TGGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAGGT
* * *
56188232 CTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGA
1 CTTATCTCCCTGAGGTTACAGTGGAGCAGA-TGAAGAA-ATCA-ATCTTATCTCCCTGA
56188291 GGCTACAGTG
Statistics
Matches: 165, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
128 3 0.02
129 143 0.87
130 5 0.03
131 14 0.08
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (128 bp):
CTTATCTCCCTGAGGTTACAGTGGAGCAGATGAAGAAATCAATCTTATCTCCCTGAAGTTGCAAT
GGAGCAGATTAAAACCACAGATCTCATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAGGT
Found at i:56188344 original size:45 final size:43
Alignment explanation
Indices: 56188295--56188429 Score: 107
Period size: 45 Copynumber: 3.1 Consensus size: 43
56188285 CCCTGAGGCT
*
56188295 ACAGTGGAGCTGGTTAAAGATAACAGATCTTGCATTCCTGCGTTA
1 ACAGTGGAGCTAGTTAAAGATAACAGATCTTGC-TTCCT-CGTTA
* *** * * * *
56188340 ACAGTGAAGC-AGACCAA-A-ACCAAACCTTGCCTCCATCGGTT-
1 ACAGTGGAGCTAGTTAAAGATAACAGATCTTGCTTCC-TC-GTTA
56188381 ACAGTGGAGCTAGTTAAAGATAACAGATCTTGCCTTCCTACGTTA
1 ACAGTGGAGCTAGTTAAAGATAACAGATCTTG-CTTCCT-CGTTA
56188426 ACAG
1 ACAG
56188430 CGAAGCAGAT
Statistics
Matches: 65, Mismatches: 17, Indels: 16
0.66 0.17 0.16
Matches are distributed among these distances:
41 13 0.20
42 17 0.26
43 2 0.03
44 15 0.23
45 18 0.28
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (43 bp):
ACAGTGGAGCTAGTTAAAGATAACAGATCTTGCTTCCTCGTTA
Found at i:56188458 original size:43 final size:43
Alignment explanation
Indices: 56188409--56188545 Score: 109
Period size: 43 Copynumber: 3.2 Consensus size: 43
56188399 GATAACAGAT
56188409 CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
* * * * * * * * * *
56188452 CTTGCC-TCCATATGTT-GCAGTGGAGCTGGT-TAAAGATAGTAGAT
1 CTTGCCTTCC-TACGTTAACAGCGAAGCAGATCGAAA-ACA-AAG-C
* *
56188496 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
56188539 CTTGCCT
1 CTTGCCT
56188546 CCATCGGTTG
Statistics
Matches: 65, Mismatches: 22, Indels: 14
0.64 0.22 0.14
Matches are distributed among these distances:
41 3 0.05
42 14 0.22
43 20 0.31
44 12 0.18
45 13 0.20
46 3 0.05
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (43 bp):
CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
Found at i:56188680 original size:87 final size:87
Alignment explanation
Indices: 56188296--56188661 Score: 583
Period size: 87 Copynumber: 4.2 Consensus size: 87
56188286 CCTGAGGCTA
* * *
56188296 CAGTGGAGCTGGTTAAAGATAACAGATCTTGCATTCCTGCGTTAACAGTGAAGCAGA-CCAAAAC
1 CAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAA-
*
56188360 CAAA-CCTTGCCTCCATCGGTTA
65 CAAAGCCTTGCCTCCATCGGTTG
* *
56188382 CAGTGGAGCTAGTTAAAGATAACAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAAC
1 CAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAAC
**
56188447 AAAGCCTTGCCTCCATATGTTG
66 AAAGCCTTGCCTCCATCGGTTG
** *
56188469 CAGTGGAGCTGGTTAAAGATAGTAGATCTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAAC
1 CAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAAC
56188534 AAAGCCTTGCCTCCATCGGTTG
66 AAAGCCTTGCCTCCATCGGTTG
* * *
56188556 TAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAAATCGAAAAC
1 CAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAAC
56188621 AAAGCCTTGCCTCCATCGGTTG
66 AAAGCCTTGCCTCCATCGGTTG
56188643 CAGTGGAGCTGGTTAAAGA
1 CAGTGGAGCTGGTTAAAGA
56188662 CATCAAGTCT
Statistics
Matches: 258, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
86 57 0.22
87 201 0.78
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
CAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAAC
AAAGCCTTGCCTCCATCGGTTG
Found at i:56188862 original size:167 final size:166
Alignment explanation
Indices: 56188670--56188993 Score: 533
Period size: 167 Copynumber: 1.9 Consensus size: 166
56188660 GACATCAAGT
56188670 CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
1 CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
* * *
56188735 ACAGATTTAAGCCACGAATCCTATCTCCCTGAGTAGCAGTAAAGTAGGTTGAAA-TTGTAGATCT
66 ACAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGCAGTAAAGTAGGTT-AAACAT-TAGATCT
*
56188799 TATCTCCCTACGCAGTAGTGGAGCAGATCGTATCAAAA
129 TATCTCCCTAAGCAGTAGTGGAGCAGATCGTATCAAAA
*
56188837 CTTATCTTCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
1 CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
* * **
56188902 GCAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTAAAGCATTAGATCTT
66 ACAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGCAGTAAAGTAGGTTAAA-CATTAGATCTT
56188967 ATCTCCCTAAGCAGTAGTGGAGCAGAT
130 ATCTCCCTAAGCAGTAGTGGAGCAGAT
56188994 AGAAGAAACC
Statistics
Matches: 146, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
166 3 0.02
167 142 0.97
168 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (166 bp):
CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
ACAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGCAGTAAAGTAGGTTAAACATTAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGTATCAAAA
Found at i:56188927 original size:84 final size:84
Alignment explanation
Indices: 56188672--56188945 Score: 236
Period size: 84 Copynumber: 3.3 Consensus size: 84
56188662 CATCAAGTCT
* * *
56188672 TATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAAC
1 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
*
56188737 AGATTTAAGCCACGAATCC
66 AGATTTAAGCAACGAATCC
* * * *** * * ** * * * *
56188756 TATCTCCCTGAGTAGCAGTAAAGTAGGTTGAA-ATTGTAGATCTTATCTCCCTACGCAGT-AGTG
1 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCT-TC-AAG-TGTAAG-G
* * * *
56188819 GAGCAGATCGT-ATCAA--AA-CT
62 AAGCAGAT-TTAAGCAACGAATCC
*
56188839 TATCTTCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
1 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
56188904 AGATTTAAGCAACGAATCC
66 AGATTTAAGCAACGAATCC
* *
56188923 TATCTCCCTGAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGCGGAG
56188946 TAGGTTAAAG
Statistics
Matches: 135, Mismatches: 44, Indels: 22
0.67 0.22 0.11
Matches are distributed among these distances:
80 1 0.01
81 14 0.10
82 4 0.03
83 40 0.30
84 59 0.44
85 4 0.03
86 12 0.09
87 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (84 bp):
TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
AGATTTAAGCAACGAATCC
Found at i:56188971 original size:43 final size:42
Alignment explanation
Indices: 56188923--56189078 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 42
56188913 CAACGAATCC
*
56188923 TATCTCCCTGAGCAGTAGTGGAGTAGGTTAAAGCATTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAG-ATTAGATCT
* * * * *
56188966 TATCTCCCTAAGCAGTAGTGGAGCA-GATAGAAGA-AACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTTA-AAGATTA--GATCT
* * * *
56189009 TATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGA-T-TAGATCT
*
56189053 TATTTCCCTAAGCAGTAGTGGAGTAG
1 TATCTCCCTAAGCAGTAGTGGAGTAG
56189079 ATCGCATCAA
Statistics
Matches: 87, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 4 0.05
43 54 0.62
44 27 0.31
46 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTAGATCT
Found at i:56189099 original size:86 final size:85
Alignment explanation
Indices: 56188752--56189100 Score: 284
Period size: 86 Copynumber: 4.1 Consensus size: 85
56188742 TAAGCCACGA
* ** *
56188752 ATCCTATCTCCCTGAGTAGCAGTAAAGTAGGTTGAA-ATTGTAGATCTTATCTCCCTACGCAGTA
1 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
56188816 GTGGAGCAGATCGTATCAAA-
66 GTGGAGCAGATCG-ATCAAAG
* * * * * * * ** * * *
56188836 A-CTTATCTTCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCT-TC-AAG-TGTA
1 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT-
* ** * *
56188897 AG-GAAGCAGATTTAAGCAACG
65 AGTGGAGCAGA-TCGATCAAAG
* *
56188918 AATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTAAAGCA-T-TAGATCTTATCTCCCTAAGCAG
1 -ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAG-ATTGTAGATCTTATCTCCCTAAGCAG
* ** *
56188981 TAGTGGAGCAGATAGAAGAAACCA
64 TAGTGGAGCAGATCGATCAAA--G
* *
56189005 ATCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATTTCCCTAAGCAGTA
1 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
*
56189070 GTGGAGTAGATCGCATCAAAG
66 GTGGAGCAGATCG-ATCAAAG
*
56189091 ATCTTATCTC
1 ATCCTATCTC
56189101 TCCGAAGTTG
Statistics
Matches: 200, Mismatches: 49, Indels: 30
0.72 0.18 0.11
Matches are distributed among these distances:
81 13 0.06
82 5 0.03
83 37 0.19
84 43 0.22
85 11 0.05
86 53 0.26
87 34 0.17
88 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (85 bp):
ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGATCAAAG
Found at i:56190561 original size:3 final size:3
Alignment explanation
Indices: 56190528--56190708 Score: 110
Period size: 3 Copynumber: 61.0 Consensus size: 3
56190518 ATACCTTTGC
* **
56190528 TAT T-T TAT CAT TAT T-T T-T TAT TAT TGG TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* ** * * * *
56190570 TAT TAT TAT TAT TAT TAA CGT CAT CAT TAC TA- TAA TAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * *
56190617 TAT TACT T-T TATT TAC CAT TAT T-T TGT TAT TAT TA- TAT TAT TAT
1 TAT TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
56190661 TAC TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TATT TACT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT TAT
56190709 ACTTTTTTTA
Statistics
Matches: 142, Mismatches: 22, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
2 16 0.11
3 110 0.77
4 16 0.11
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:56190793 original size:18 final size:18
Alignment explanation
Indices: 56190753--56190793 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
56190743 GCACTTGTAT
*
56190753 ATATA-TTTTTATAATAT
1 ATATACTTTTTATAATAC
*
56190770 ACATACTTTTTATAATAC
1 ATATACTTTTTATAATAC
56190788 ATATAC
1 ATATAC
56190794 ACGTACATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATACTTTTTATAATAC
Found at i:56191021 original size:15 final size:15
Alignment explanation
Indices: 56191003--56191033 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
56190993 TTGATTTTAT
*
56191003 TTATTTTATATTTTG
1 TTATTTTATATATTG
56191018 TTATTTTATATATTG
1 TTATTTTATATATTG
56191033 T
1 T
56191034 AGGTTTGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
TTATTTTATATATTG
Found at i:56191520 original size:112 final size:109
Alignment explanation
Indices: 56191387--56191684 Score: 449
Period size: 112 Copynumber: 2.7 Consensus size: 109
56191377 CAAGCATTTT
56191387 GTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATG
1 GTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATG
*
56191452 GCTTAATATCCTTTTAAAAATTTTTAAAAATAAGGCAATGTTTTGC
66 GCTAAATATCCTTTTAAAAA--TTTAAAAATAAGGCAATGTTTTGC
*
56191498 GTTTGGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAAT
1 GTTTGG-AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
*
56191563 GGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGC
65 GGCTAAATATCCTTTTAAAAATTTAAAAATAAGGCAATGTTTTGC
* * * * * * *
56191608 GTTTGGAAATTTGA-AGAACGTACCCTAAGGTGCTGGGTTTCGA--TTTCTCGTTTAACCAAATA
1 GTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATG
*
56191670 GCCAAATATCCTTTT
66 GCTAAATATCCTTTT
56191685 GAATTTCAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
106 30 0.17
108 25 0.14
109 7 0.04
110 29 0.17
111 6 0.03
112 77 0.44
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (109 bp):
GTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATG
GCTAAATATCCTTTTAAAAATTTAAAAATAAGGCAATGTTTTGC
Found at i:56193058 original size:30 final size:30
Alignment explanation
Indices: 56193022--56193083 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
56193012 CTATAAAGTG
56193022 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
56193052 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
56193082 CG
1 CG
56193084 TCCAGTTAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.34, G:0.24, T:0.23
Consensus pattern (30 bp):
CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
Found at i:56193101 original size:30 final size:30
Alignment explanation
Indices: 56193022--56193104 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
56193012 CTATAAAGTG
* * *
56193022 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTAGACGCGCTTTCCAAAAAGCT
* * *
56193052 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTAGACGCGCTTTCCAAAAAGCT
*
56193082 CGTCC-AGTTAGACGCGCTTTCCA
1 CG-CCTAGCTAGACGCGCTTTCCA
56193105 GTTAAATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 46 0.96
31 2 0.04
ACGTcount: A:0.19, C:0.34, G:0.23, T:0.24
Consensus pattern (30 bp):
CGCCTAGCTAGACGCGCTTTCCAAAAAGCT
Found at i:56198932 original size:28 final size:28
Alignment explanation
Indices: 56198896--56198958 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
56198886 CCAGGTTTAT
56198896 GCAGCAACCTTCAAAGGTTCATTATGGA
1 GCAGCAACCTTCAAAGGTTCATTATGGA
56198924 GCAGCAACCTTCAAAGGTTCATTATGGA
1 GCAGCAACCTTCAAAGGTTCATTATGGA
56198952 GCAGCAA
1 GCAGCAA
56198959 AATGAGTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (28 bp):
GCAGCAACCTTCAAAGGTTCATTATGGA
Found at i:56201952 original size:26 final size:27
Alignment explanation
Indices: 56201905--56201955 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
56201895 AAAATTTATC
56201905 AAAATATTATAAATTTTTTTATTTACT
1 AAAATATTATAAATTTTTTTATTTACT
56201932 AAAATATTAT-AATTTTTTTATTTA
1 AAAATATTATAAATTTTTTTATTTA
56201956 TATTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
AAAATATTATAAATTTTTTTATTTACT
Found at i:56202047 original size:19 final size:19
Alignment explanation
Indices: 56202023--56202074 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
56202013 TTTAATTAAG
56202023 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
56202042 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
56202060 TAATAACTCTATTTT
1 TAATAACTCTATTTT
56202075 TTTGGTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:56202113 original size:28 final size:26
Alignment explanation
Indices: 56202081--56202173 Score: 143
Period size: 25 Copynumber: 3.5 Consensus size: 26
56202071 TTTTTTTGGT
*
56202081 ATATTTTAGTAAATAAAAAAAATTTATA
1 ATATTTTAATAAAT-AAAAAAA-TTATA
56202109 ATATTTTAATAAATAAAAAAA-TATA
1 ATATTTTAATAAATAAAAAAATTATA
56202134 ATATTTTAATAAATAAAAAAATTATA
1 ATATTTTAATAAATAAAAAAATTATA
*
56202160 ATATTTTGATAAAT
1 ATATTTTAATAAAT
56202174 TTTTATTTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
25 25 0.40
26 17 0.27
27 7 0.11
28 13 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
ATATTTTAATAAATAAAAAAATTATA
Found at i:56202152 original size:26 final size:26
Alignment explanation
Indices: 56202081--56202173 Score: 134
Period size: 26 Copynumber: 3.5 Consensus size: 26
56202071 TTTTTTTGGT
*
56202081 ATATTTTAGTAAATAAAAAAAATTTATA
1 ATATTTTAATAAATAAAAAAAA--TATA
56202109 ATATTTTAATAAAT-AAAAAAATATA
1 ATATTTTAATAAATAAAAAAAATATA
*
56202134 ATATTTTAATAAATAAAAAAATTATA
1 ATATTTTAATAAATAAAAAAAATATA
*
56202160 ATATTTTGATAAAT
1 ATATTTTAATAAAT
56202174 TTTTATTTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
25 18 0.30
26 23 0.38
27 7 0.11
28 13 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
ATATTTTAATAAATAAAAAAAATATA
Found at i:56206451 original size:5 final size:5
Alignment explanation
Indices: 56206441--56206477 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
56206431 ATAGATGTTA
*
56206441 AAATT AAATT AAATT AAGTT AAATT AAATT AAATT AA
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT AA
56206478 CCTAAATGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:56206483 original size:15 final size:15
Alignment explanation
Indices: 56206441--56206484 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
56206431 ATAGATGTTA
*
56206441 AAATTAAATTAAATT
1 AAATTAAACTAAATT
* *
56206456 AAGTTAAATTAAATT
1 AAATTAAACTAAATT
*
56206471 AAATTAACCTAAAT
1 AAATTAAACTAAAT
56206485 GCAAATGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (15 bp):
AAATTAAACTAAATT
Found at i:56212274 original size:13 final size:14
Alignment explanation
Indices: 56212240--56212267 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
56212230 ATTGAGATAT
56212240 AAAATTTATATTAG
1 AAAATTTATATTAG
56212254 AAAATTTATATTAG
1 AAAATTTATATTAG
56212268 CAATTTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
AAAATTTATATTAG
Found at i:56213884 original size:25 final size:25
Alignment explanation
Indices: 56213855--56213906 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
56213845 TAATTCAAGT
*
56213855 TTCAACACTTTTTATATATTT-GAAA
1 TTCAA-ACTTTGTATATATTTGGAAA
* *
56213880 TTCAATCTTTGTATATTTTTGGAAA
1 TTCAAACTTTGTATATATTTGGAAA
56213905 TT
1 TT
56213907 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.52
Consensus pattern (25 bp):
TTCAAACTTTGTATATATTTGGAAA
Found at i:56234315 original size:13 final size:13
Alignment explanation
Indices: 56234274--56234318 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
56234264 CAACCATTTT
56234274 CAAAAAAGAGAAAA
1 CAAAAAA-AGAAAA
* *
56234288 GAAAAGAAGAAAAA
1 CAAAAAAAG-AAAA
56234302 CAAAAAAAGAAAA
1 CAAAAAAAGAAAA
56234315 CAAA
1 CAAA
56234319 GAAGGGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (13 bp):
CAAAAAAAGAAAA
Found at i:56237070 original size:21 final size:20
Alignment explanation
Indices: 56237032--56237070 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
56237022 TATTAATAAT
*
56237032 TAAGTCTCTGTATCTGTGAC
1 TAAGTCTCTGTATATGTGAC
*
56237052 TAAGTGCTCTGTTTATGTG
1 TAAGT-CTCTGTATATGTG
56237071 TTTGAGGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.15, G:0.23, T:0.44
Consensus pattern (20 bp):
TAAGTCTCTGTATATGTGAC
Found at i:56240548 original size:17 final size:16
Alignment explanation
Indices: 56240515--56240570 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
56240505 CATAATATAG
*
56240515 TATAAATAATTATGAT
1 TATAAATAATAATGAT
56240531 TATAAATAATGAATGAT
1 TATAAATAAT-AATGAT
**
56240548 TATATGTAATATTATGAT
1 TATAAATAATA--ATGAT
56240566 TATAA
1 TATAA
56240571 TATGTATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 11 0.33
17 13 0.39
18 9 0.27
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (16 bp):
TATAAATAATAATGAT
Found at i:56241779 original size:5 final size:5
Alignment explanation
Indices: 56241771--56241798 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
56241761 AATTTTATAA
56241771 AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAA
56241799 ATTTTTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:56252801 original size:9 final size:9
Alignment explanation
Indices: 56252785--56252845 Score: 104
Period size: 9 Copynumber: 6.8 Consensus size: 9
56252775 GGTATTTTTC
56252785 GGTAATTCG
1 GGTAATTCG
*
56252794 GTTAATTCG
1 GGTAATTCG
*
56252803 GTTAATTCG
1 GGTAATTCG
56252812 GGTAATTCG
1 GGTAATTCG
56252821 GGTAATTCG
1 GGTAATTCG
56252830 GGTAATTCG
1 GGTAATTCG
56252839 GGTAATT
1 GGTAATT
56252846 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:56253022 original size:12 final size:12
Alignment explanation
Indices: 56253005--56253029 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56252995 AGTAATTTCG
56253005 GGTCGGTTAACC
1 GGTCGGTTAACC
56253017 GGTCGGTTAACC
1 GGTCGGTTAACC
56253029 G
1 G
56253030 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:56253823 original size:17 final size:19
Alignment explanation
Indices: 56253789--56253838 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
56253779 TAAAGAAATA
*
56253789 TTTTATATTTTATATTATT
1 TTTTAAATTTTATATTATT
56253808 TTTTAAATTTT-T-TTA-T
1 TTTTAAATTTTATATTATT
56253824 TTTT-AATTTTA-ATTA
1 TTTTAAATTTTATATTA
56253839 ATTACTAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 6 0.21
16 8 0.29
17 3 0.11
18 1 0.04
19 10 0.36
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTAAATTTTATATTATT
Found at i:56257523 original size:39 final size:38
Alignment explanation
Indices: 56257469--56257543 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 38
56257459 AGATTTGAAC
* **
56257469 TTAAGATCTTAAACTTTCCAAATTTCTAGGGCCTTAAGT
1 TTAAGATCTTAAACTTCCCAAAGCTCTA-GGCCTTAAGT
56257508 TTAAGATCTTAAACTTCCCAAAGCTCTAGGCCTTAA
1 TTAAGATCTTAAACTTCCCAAAGCTCTAGGCCTTAA
56257544 ACTTACCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 8 0.24
39 25 0.76
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (38 bp):
TTAAGATCTTAAACTTCCCAAAGCTCTAGGCCTTAAGT
Found at i:56262240 original size:33 final size:33
Alignment explanation
Indices: 56262203--56262270 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
56262193 TAACTGATTT
* *
56262203 AACCATTTATCAAGATTT-AGAAACCTTGATAAA
1 AACCATTGAACAAGATTTGA-AAACCTTGATAAA
* *
56262236 AACCATTGAACAGGATTTGAAAACCTTGTTAAA
1 AACCATTGAACAAGATTTGAAAACCTTGATAAA
56262269 AA
1 AA
56262271 TCATAAACTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
AACCATTGAACAAGATTTGAAAACCTTGATAAA
Found at i:56263405 original size:26 final size:28
Alignment explanation
Indices: 56263376--56263436 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
56263366 TATGAATTTG
*
56263376 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
56263402 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
56263430 TAAAATT
1 TATAATT
56263437 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:56263445 original size:101 final size:94
Alignment explanation
Indices: 56263276--56263556 Score: 294
Period size: 101 Copynumber: 3.0 Consensus size: 94
56263266 ACTATAAAAG
* * * * * *
56263276 ATAATTTAAAATGATTAATATTAAATATATTTTAATTGA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT-TA
*
56263340 ATAATTATAACTAATAAATTATCTTATATGAATTTGT
64 ATAA-TATAA-TAAT---TT-TCTTATATGAATTTAT
* *
56263377 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TT-AT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTAAT
56263439 --TGATAATAATTTTCTTATATGAATTTAT
66 AAT-ATAATAATTTTCTTATATGAATTTAT
* *
56263467 ACAATTTAAAATAATTAATATTAAATATAA-TTAATAATGATATATAATTTCATAAAATTCTTAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATT-TTAA
*
56263531 T-A-ATAA-AATGTTCTTATATGAATTTA
65 TAATATAATAATTTTCTTATATGAATTTA
56263557 CTAAAATCAA
Statistics
Matches: 159, Mismatches: 14, Indels: 24
0.81 0.07 0.12
Matches are distributed among these distances:
89 26 0.16
90 42 0.26
91 21 0.13
92 6 0.04
93 2 0.01
94 5 0.03
95 4 0.03
97 2 0.01
99 1 0.01
100 2 0.01
101 48 0.30
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (94 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTAAT
AATATAATAATTTTCTTATATGAATTTAT
Found at i:56263489 original size:90 final size:90
Alignment explanation
Indices: 56263342--56263556 Score: 308
Period size: 90 Copynumber: 2.4 Consensus size: 90
56263332 AATTTAAAAT
* * * * *
56263342 AATTA-TAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATA
1 AATTATTAA-TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATA
56263406 ATTTAATAATAATATATAATTTCATAA
65 A-TTAATAATAATATATAATTTCATAA
*
56263433 AATTATTGATAAT-AATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
56263497 TTAATAATGATATATAATTTCATAA
66 TTAATAATAATATATAATTTCATAA
* *
56263522 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATTATTAATAAT-AAATTTTCTTATATGAATTTA
56263557 CTAAAATCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
89 35 0.32
90 46 0.41
91 28 0.25
92 2 0.02
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (90 bp):
AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
TTAATAATAATATATAATTTCATAA
Found at i:56263498 original size:16 final size:15
Alignment explanation
Indices: 56263472--56263502 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
56263462 TTTATACAAT
56263472 TTAAAATAATTAATA
1 TTAAAATAATTAATA
56263487 TTAAATATAATTAATA
1 TTAAA-ATAATTAATA
56263503 ATGATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAAAATAATTAATA
Found at i:56263531 original size:46 final size:46
Alignment explanation
Indices: 56263383--56263537 Score: 122
Period size: 46 Copynumber: 3.4 Consensus size: 46
56263373 TTGTATAATT
* * * * *
56263383 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAA-TTAATAATGATATATAATTTCA
* * ** * *
56263430 TAAAATTATTGATAAT-AATTTTCTT-AT-ATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATTAATAATG-ATATATA-ATTTCA
* *
56263473 TAAAATAATTAATATTAAATATAATTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTAATAATGATATATAATTTCA
*
56263519 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
56263538 ATGTTCTTAT
Statistics
Matches: 79, Mismatches: 22, Indels: 15
0.68 0.19 0.13
Matches are distributed among these distances:
43 15 0.19
44 17 0.22
45 13 0.16
46 22 0.28
47 12 0.15
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATTATTAATAATAAATATAATTAATAATGATATATAATTTCA
Found at i:56266526 original size:33 final size:33
Alignment explanation
Indices: 56266487--56266558 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
56266477 ATTATAAAGC
*
56266487 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
56266520 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
56266553 ATGTAT
1 ATGTAT
56266559 GATTCAAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:56266663 original size:33 final size:33
Alignment explanation
Indices: 56266625--56266697 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
56266615 TCATTAAAGC
*
56266625 ATGTATAATTGACCTAAAATTAATTGTTGGCGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGCAT
*
56266658 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGCAT
56266691 ATGTATA
1 ATGTATA
56266698 CTTCAAGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGCAT
Found at i:56266729 original size:138 final size:138
Alignment explanation
Indices: 56266481--56266766 Score: 547
Period size: 138 Copynumber: 2.1 Consensus size: 138
56266471 AAAGAAATTA
*
56266481 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGCGTATGTATAATTGACCTAAAATTAATTG
56266546 TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
66 TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
56266611 TAGTTCAT
131 TAGTTCAT
56266619 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGCGTATGTATAATTGACCTAAAATTAATTG
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGCGTATGTATAATTGACCTAAAATTAATTG
56266684 TTGGTATATGTAT-ACTTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGA
66 TTGGTATATGTATGA-TTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGA
56266748 TTAGTTCAT
130 TTAGTTCAT
56266757 TAAAGCATGT
1 TAAAGCATGT
56266767 TCAAAGTTTT
Statistics
Matches: 146, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
137 1 0.01
138 145 0.99
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (138 bp):
TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGCGTATGTATAATTGACCTAAAATTAATTG
TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
TAGTTCAT
Found at i:56266798 original size:37 final size:37
Alignment explanation
Indices: 56266743--56266829 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 37
56266733 GTATAAATAT
* * *
56266743 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
*
56266780 ATTGATTAGTTTAATAAAGCTTGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
56266817 ATTGATTAGTTTA
1 ATTGATTAGTTTA
56266830 TTTATTTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
Found at i:56268110 original size:69 final size:69
Alignment explanation
Indices: 56268000--56268139 Score: 185
Period size: 69 Copynumber: 2.0 Consensus size: 69
56267990 AATCAAGTTC
*
56268000 CAGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
1 CAGTTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
56268065 AGAA
66 AGAA
* * * * * *
56268069 CAGTTTCATCA-TCTACTCACTAGCAAA-CTAATAACAGTTTCCAGCAGACTATCAAAACAATTT
1 CAGTTTCAT-ATTCTACTCACTAACAAATC-AAGAACAATTTCCAGCAGACAATCAAAACAACTG
56268132 CCAGAA
64 CCAGAA
56268138 CA
1 CA
56268140 AACCAACAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
68 1 0.02
69 60 0.97
70 1 0.02
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (69 bp):
CAGTTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
AGAA
Found at i:56269246 original size:36 final size:37
Alignment explanation
Indices: 56269162--56269268 Score: 137
Period size: 38 Copynumber: 2.9 Consensus size: 37
56269152 GGCAGAAACT
* *
56269162 GAGCAAATTGGCCGAAAAAGAAAAGAAAAGAAACGGGGG
1 GAGCAAATCGGCAG-AAAAGAAAAGAAAAGAAAC-GGGG
* *
56269201 GAGCAAATCGGCAGAAAAGAAAAGAAAATAAAC-TGG
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAACGGGG
*
56269237 GAGCAAATCGGCAG-AAAGAAAAGCAAAGAAAC
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAAC
56269269 AAGGAAGCAA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 16 0.26
36 16 0.26
38 18 0.29
39 12 0.19
ACGTcount: A:0.54, C:0.12, G:0.28, T:0.06
Consensus pattern (37 bp):
GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAACGGGG
Found at i:56269278 original size:36 final size:36
Alignment explanation
Indices: 56269162--56269280 Score: 132
Period size: 36 Copynumber: 3.2 Consensus size: 36
56269152 GGCAGAAACT
* * *
56269162 GAGCAAATTGGCCGAAAAAGAAAAGAAAAGAAACGGGGG
1 GAGCAAATCGGCAG-AAAAGAAAAGAAAAGAAAC--AGG
* *
56269201 GAGCAAATCGGCAGAAAAGAAAAGAAAATAAACTGG
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAACAGG
*
56269237 GAGCAAATCGGCAG-AAAGAAAAGCAAAGAAACAAGG
1 GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAAC-AGG
*
56269273 AAGCAAAT
1 GAGCAAAT
56269281 TTGATGAAGG
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
35 16 0.23
36 25 0.35
38 18 0.25
39 12 0.17
ACGTcount: A:0.55, C:0.12, G:0.28, T:0.06
Consensus pattern (36 bp):
GAGCAAATCGGCAGAAAAGAAAAGAAAAGAAACAGG
Found at i:56269575 original size:25 final size:26
Alignment explanation
Indices: 56269547--56269601 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
56269537 TTATTAAATT
*
56269547 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
56269572 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
56269597 A-ATAT
1 ATATAT
56269602 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:56269835 original size:16 final size:16
Alignment explanation
Indices: 56269814--56269848 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
56269804 GTTTGCTATA
* *
56269814 ACACCTCTATTCCATT
1 ACACCTCTAATCCAAT
56269830 ACACCTCTAATCCAAT
1 ACACCTCTAATCCAAT
56269846 ACA
1 ACA
56269849 GCGACCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
ACACCTCTAATCCAAT
Found at i:56271234 original size:38 final size:38
Alignment explanation
Indices: 56271162--56271248 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
56271152 ACAATGAACT
* * * *
56271162 TGCTTATCATGTGTTCAGTTCCATAATAGCAGTAGACA
1 TGCTTAACATGTATTCAGTTCAATAATAACAGTAGACA
* * *
56271200 TGCTTAACATGTATTCAGTTCAATAGTAATAGTAGGCA
1 TGCTTAACATGTATTCAGTTCAATAATAACAGTAGACA
*
56271238 TGCTAAACATG
1 TGCTTAACATG
56271249 CAATCAGTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (38 bp):
TGCTTAACATGTATTCAGTTCAATAATAACAGTAGACA
Found at i:56273572 original size:30 final size:31
Alignment explanation
Indices: 56273522--56273580 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
56273512 AAACTTTCAA
*
56273522 AATTCAAAAAGTACAAAGACTAAAATTGACC
1 AATTCAAAAAGAACAAAGACTAAAATTGACC
*
56273553 AATTCAAAAA-AATAAAGACTAAAATTGA
1 AATTCAAAAAGAACAAAGACTAAAATTGA
56273581 TAAAAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.59, C:0.12, G:0.08, T:0.20
Consensus pattern (31 bp):
AATTCAAAAAGAACAAAGACTAAAATTGACC
Found at i:56282370 original size:27 final size:27
Alignment explanation
Indices: 56282315--56282393 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
56282305 ACATAAAGTC
* *
56282315 ATAACAGTCATTTCATCTCCTA--GGTGT
1 ATAACAGTCATTTTA-C-CCTATGGGGGT
56282342 ATAACAGTCATTTTACCCTATGGGGGT
1 ATAACAGTCATTTTACCCTATGGGGGT
** *
56282369 ATTTCGGTCATTTTACCCTATGGGG
1 ATAACAGTCATTTTACCCTATGGGG
56282394 ACATTTCGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 40 0.89
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
ATAACAGTCATTTTACCCTATGGGGGT
Found at i:56282399 original size:27 final size:27
Alignment explanation
Indices: 56282348--56282407 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
56282338 GTGTATAACA
**
56282348 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGACATTTCG
56282375 GTCATTTTACCCTATGGGGACATTTCG
1 GTCATTTTACCCTATGGGGACATTTCG
56282402 GTCATT
1 GTCATT
56282408 CTAGCCATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGACATTTCG
Found at i:56282480 original size:27 final size:27
Alignment explanation
Indices: 56282450--56282600 Score: 128
Period size: 27 Copynumber: 5.3 Consensus size: 27
56282440 TATAATAGTT
* *
56282450 ATTTTACCTTATGAGGGTATTTCGATC
1 ATTTTACCTTATGGGGGTATTTCGGTC
*
56282477 ATTTTACCCTATAGGGGTATTTTGATATTTCGGTC
1 ATTTTACCTTAT-GGGG------G-TATTTCGGTC
* *
56282512 ACTTTACCCTAT-GGGGTATATT-GGTC
1 ATTTTACCTTATGGGGGTAT-TTCGGTC
56282538 ATTTTACCTTATGGGGGTATTTCGGTC
1 ATTTTACCTTATGGGGGTATTTCGGTC
* *
56282565 ATTCTATCC-TATGGGGGTATTTCGATC
1 ATTTTA-CCTTATGGGGGTATTTCGGTC
56282592 ATTTTACCT
1 ATTTTACCT
56282601 ATTTTGGGGT
Statistics
Matches: 102, Mismatches: 9, Indels: 26
0.74 0.07 0.19
Matches are distributed among these distances:
26 21 0.21
27 52 0.51
28 5 0.05
33 3 0.03
34 1 0.01
35 20 0.20
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.44
Consensus pattern (27 bp):
ATTTTACCTTATGGGGGTATTTCGGTC
Found at i:56282485 original size:99 final size:100
Alignment explanation
Indices: 56282314--56282493 Score: 290
Period size: 99 Copynumber: 1.8 Consensus size: 100
56282304 AACATAAAGT
* * *
56282314 CATAACAGTCATTTCATCTCCTAGGTGTATAACAGTCATTTTACCCTATGGGGGTATTTCGGTCA
1 CATAACAGTCATTTCATCTCCTAGGAGTATAACAGTCATTTTACCCTATGAGGGTATTTCGATCA
56282379 TTTTACCCTAT-GGGGACATTTCGGTCATTCTAGC
66 TTTTACCCTATAGGGGACATTTCGGTCATTCTAGC
* * * *
56282413 CATAACAGTCATTTCATCTTCTAGGAGTATAATAGTTATTTTACCTTATGAGGGTATTTCGATCA
1 CATAACAGTCATTTCATCTCCTAGGAGTATAACAGTCATTTTACCCTATGAGGGTATTTCGATCA
56282478 TTTTACCCTATAGGGG
66 TTTTACCCTATAGGGG
56282494 TATTTTGATA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 69 0.95
100 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (100 bp):
CATAACAGTCATTTCATCTCCTAGGAGTATAACAGTCATTTTACCCTATGAGGGTATTTCGATCA
TTTTACCCTATAGGGGACATTTCGGTCATTCTAGC
Found at i:56290863 original size:53 final size:52
Alignment explanation
Indices: 56290792--56290936 Score: 173
Period size: 53 Copynumber: 2.7 Consensus size: 52
56290782 CTAAAGAACT
* *
56290792 ATATCATGTAAGATCATAACTGGTGGGTTACAGCATCATATGGAAAGAAGACC
1 ATATCATGTAAGACCATAACTAGTGGGTTA-AGCATCATATGGAAAGAAGACC
** * * * *
56290845 ATATCATGTAAGACCATAACTAGTATGTTATGAAATTATATGGAAATAAGACC
1 ATATCATGTAAGACCATAACTAGTGGGTTAAG-CATCATATGGAAAGAAGACC
* *
56290898 ATATCGTGTAAGACCATAACTAGTGGGTTATGGCATCAT
1 ATATCATGTAAGACCATAACTAGTGGGTTA-AGCATCAT
56290937 GTTGGAAAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 74 0.97
54 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (52 bp):
ATATCATGTAAGACCATAACTAGTGGGTTAAGCATCATATGGAAAGAAGACC
Found at i:56291099 original size:29 final size:27
Alignment explanation
Indices: 56291067--56291270 Score: 96
Period size: 28 Copynumber: 7.3 Consensus size: 27
56291057 AAGTACAACA
56291067 TTTGTGGAAAAACTTTAGAAAGGTAAGCC
1 TTTGTGG-AAAACTTT-GAAAGGTAAGCC
* * *
56291096 TTTGTGGAGAACTTGTTAAAGG-ACA-CA
1 TTTGTGGAAAACTT-TGAAAGGTA-AGCC
* **
56291123 TTTGTGGCAAAACTTTAGAAATGTAAGTG
1 TTTGTGG-AAAACTTT-GAAAGGTAAGCC
* * *
56291152 TTTGTGGTAAACTTGTTAAAGG-ACAACC
1 TTTGTGGAAAACTT-TGAAAGGTA-AGCC
*
56291180 TTTGTGGCAAAACTCTTGAAGGGTAAGCC
1 TTTGTGG-AAAACT-TTGAAAGGTAAGCC
* *
56291209 TTCGTGTCG-AAACTCTT-AAAGG-ACGCC
1 TT--TGTGGAAAACT-TTGAAAGGTAAGCC
* * * *
56291236 TTTGTGGTGAGACTCTGAAAGGAAAGCC
1 TTTGTGG-AAAACTTTGAAAGGTAAGCC
56291264 TTTGTGG
1 TTTGTGG
56291271 CGAGTACTTA
Statistics
Matches: 133, Mismatches: 25, Indels: 35
0.69 0.13 0.18
Matches are distributed among these distances:
25 4 0.03
26 1 0.01
27 26 0.20
28 56 0.42
29 40 0.30
30 2 0.02
31 4 0.03
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (27 bp):
TTTGTGGAAAACTTTGAAAGGTAAGCC
Found at i:56291201 original size:28 final size:28
Alignment explanation
Indices: 56291167--56291271 Score: 79
Period size: 27 Copynumber: 3.8 Consensus size: 28
56291157 GGTAAACTTG
56291167 TTAAAGGACAACCTTTGTGGCAAAACTC
1 TTAAAGGACAACCTTTGTGGCAAAACTC
* ** * * *
56291195 TTGAAGGGTAAGCCTTCGTGTCGAAACTC
1 TTAAAGGACAA-CCTTTGTGGCAAAACTC
* ** *
56291224 TTAAAGGAC-GCCTTTGTGGTGAGACTC
1 TTAAAGGACAACCTTTGTGGCAAAACTC
*
56291251 TGAAAGGA-AAGCCTTTGTGGC
1 TTAAAGGACAA-CCTTTGTGGC
56291272 GAGTACTTAA
Statistics
Matches: 57, Mismatches: 17, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
27 20 0.35
28 17 0.30
29 20 0.35
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (28 bp):
TTAAAGGACAACCTTTGTGGCAAAACTC
Found at i:56291228 original size:57 final size:55
Alignment explanation
Indices: 56291064--56291270 Score: 204
Period size: 56 Copynumber: 3.7 Consensus size: 55
56291054 TAAAAGTACA
*
56291064 ACATTTGTGGAAAAACTTTAGAAAGGTAAGCCTTTGTGGAGAACTTGTTAAAGGAC
1 ACATTTGTGGCAAAACTTTAGAAAGGTAAGCCTTTGTGGA-AACTTGTTAAAGGAC
* **
56291120 ACATTTGTGGCAAAACTTTAGAAATGTAAGTGTTTGTGGTAAACTTGTTAAAGGAC
1 ACATTTGTGGCAAAACTTTAGAAAGGTAAGCCTTTGTGG-AAACTTGTTAAAGGAC
* * * *
56291176 AACCTTTGTGGCAAAACTCTT-GAAGGGTAAGCCTTCGTGTCGAAAC-TCTTAAAGGAC
1 -ACATTTGTGGCAAAACT-TTAGAAAGGTAAGCCTT--TGTGGAAACTTGTTAAAGGAC
* * ** * * *
56291233 GCCTTTGTGGTGAGACTCT-GAAAGGAAAGCCTTTGTGG
1 ACATTTGTGGCAAAACTTTAGAAAGGTAAGCCTTTGTGG
56291271 CGAGTACTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
53 4 0.03
55 13 0.10
56 63 0.50
57 37 0.29
58 6 0.05
59 4 0.03
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (55 bp):
ACATTTGTGGCAAAACTTTAGAAAGGTAAGCCTTTGTGGAAACTTGTTAAAGGAC
Found at i:56291296 original size:31 final size:27
Alignment explanation
Indices: 56291226--56291302 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 27
56291216 CGAAACTCTT
* *
56291226 AAAGGACGCCTTTGTGGTGAGACTCTG
1 AAAGGACGCCTTTGTGGCGAGACTATG
*
56291253 AAAGGAAAGCCTTTGTGGCGAGTACTTAATG
1 AAAGG-ACGCCTTTGTGGCGAG-AC-T-ATG
56291284 AAAAGGACGCCTTTGTGGC
1 -AAAGGACGCCTTTGTGGC
56291303 AATATCTAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
28 14 0.34
29 2 0.05
30 1 0.02
31 14 0.34
32 5 0.12
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (27 bp):
AAAGGACGCCTTTGTGGCGAGACTATG
Found at i:56299992 original size:23 final size:22
Alignment explanation
Indices: 56299949--56299992 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
56299939 TTCTAAGTCG
56299949 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
56299972 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
56299993 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Done.