Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 193 of 228
Found at i:57161269 original size:18 final size:19
Alignment explanation
Indices: 57161246--57161281 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
57161236 TAAAAGATTA
*
57161246 TTTATATA-ATTTTTAGAG
1 TTTATATATATATTTAGAG
57161264 TTTATATATATATTTAGA
1 TTTATATATATATTTAGA
57161282 TTATTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
TTTATATATATATTTAGAG
Found at i:57161290 original size:19 final size:19
Alignment explanation
Indices: 57161240--57161333 Score: 79
Period size: 19 Copynumber: 5.0 Consensus size: 19
57161230 TGGATTTAAA
*
57161240 AGATTATTTATATAATTTTT
1 AGATTATTTATAT-ATATTT
*
57161260 AGAGTT-TATATATATATTT
1 AGA-TTATTTATATATATTT
*
57161279 AGATTATTTATATACTTTTT
1 AGATTATTTATATA-TATTT
* * *
57161299 CG-TTATTTTTACATATTT
1 AGATTATTTATATATATTT
57161317 A-ATTATTT-TATATATTT
1 AGATTATTTATATATATTT
57161334 TAATTTTTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
17 8 0.13
18 12 0.20
19 24 0.40
20 14 0.23
21 2 0.03
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
AGATTATTTATATATATTT
Found at i:57161324 original size:18 final size:19
Alignment explanation
Indices: 57161301--57161344 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
57161291 TACTTTTTCG
57161301 TTATTTTTACATA-TTTAA
1 TTATTTTTACATATTTTAA
*
57161319 TTA-TTTTATATATTTTAA
1 TTATTTTTACATATTTTAA
57161337 TT-TTTTTA
1 TTATTTTTA
57161345 ATTTTCTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTACATATTTTAA
Found at i:57164985 original size:6 final size:6
Alignment explanation
Indices: 57164974--57165039 Score: 105
Period size: 6 Copynumber: 11.0 Consensus size: 6
57164964 TGGATGAACA
*
57164974 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTAAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT
* *
57165022 GCTGAT TCTGGT TCTGAT
1 TCTGAT TCTGAT TCTGAT
57165040 GTAGATGTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.48
Consensus pattern (6 bp):
TCTGAT
Found at i:57172180 original size:16 final size:16
Alignment explanation
Indices: 57172159--57172198 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
57172149 CCTACTCCCT
57172159 CCCAATTTAAACCCAG
1 CCCAATTTAAACCCAG
*
57172175 CCCAATTTAAATCCAG
1 CCCAATTTAAACCCAG
57172191 CCCAATTT
1 CCCAATTT
57172199 TCTCTTAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.05, T:0.25
Consensus pattern (16 bp):
CCCAATTTAAACCCAG
Found at i:57172932 original size:9 final size:9
Alignment explanation
Indices: 57172918--57173008 Score: 74
Period size: 9 Copynumber: 9.7 Consensus size: 9
57172908 CCTAATTTTT
57172918 TAATTTGGG
1 TAATTTGGG
**
57172927 TAATTTGAA
1 TAATTTGGG
57172936 TAATTTTCGGG
1 TAA-TTT-GGG
57172947 TAATTTGGG
1 TAATTTGGG
57172956 TAATTTTCGGG
1 TAA-TTT-GGG
*
57172967 TAATTCGGG
1 TAATTTGGG
*
57172976 TAATTCGGG
1 TAATTTGGG
* **
57172985 TAAGTCAGG
1 TAATTTGGG
*
57172994 TAATTCGGG
1 TAATTTGGG
57173003 TAATTT
1 TAATTT
57173009 TTAACTAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
9 47 0.69
10 11 0.16
11 10 0.15
ACGTcount: A:0.25, C:0.07, G:0.27, T:0.41
Consensus pattern (9 bp):
TAATTTGGG
Found at i:57172949 original size:20 final size:20
Alignment explanation
Indices: 57172924--57172971 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
57172914 TTTTTAATTT
57172924 GGGTAATTTGAATAATTTTC
1 GGGTAATTTGAATAATTTTC
**
57172944 GGGTAATTTGGGTAATTTTC
1 GGGTAATTTGAATAATTTTC
57172964 GGGTAATT
1 GGGTAATT
57172972 CGGGTAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.25, C:0.04, G:0.27, T:0.44
Consensus pattern (20 bp):
GGGTAATTTGAATAATTTTC
Found at i:57172984 original size:18 final size:18
Alignment explanation
Indices: 57172941--57173007 Score: 89
Period size: 18 Copynumber: 3.6 Consensus size: 18
57172931 TTGAATAATT
*
57172941 TTCGGGTAATTTGGGTAA
1 TTCGGGTAATTCGGGTAA
57172959 TTTTCGGGTAATTCGGGTAA
1 --TTCGGGTAATTCGGGTAA
* *
57172979 TTCGGGTAAGTCAGGTAA
1 TTCGGGTAATTCGGGTAA
57172997 TTCGGGTAATT
1 TTCGGGTAATT
57173008 TTTAACTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
18 26 0.60
20 17 0.40
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.37
Consensus pattern (18 bp):
TTCGGGTAATTCGGGTAA
Found at i:57173371 original size:24 final size:24
Alignment explanation
Indices: 57173344--57173407 Score: 60
Period size: 26 Copynumber: 2.6 Consensus size: 24
57173334 AATAAAACTT
57173344 ATTAAAAATAT-AAGAA-ATATATAA
1 ATTAAAAAT-TCAA-AATATATATAA
57173368 ATTATAAAACTTCAAAATATATATAA
1 ATTA-AAAA-TTCAAAATATATATAA
* *
57173394 ATTGAAAATGCAAA
1 ATTAAAAATTCAAA
57173408 TAAAAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
24 9 0.26
25 11 0.32
26 14 0.41
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
ATTAAAAATTCAAAATATATATAA
Found at i:57174947 original size:19 final size:17
Alignment explanation
Indices: 57174915--57174949 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
57174905 ATCGTTCTTG
57174915 ATTTTCTTTTTCTAATT
1 ATTTTCTTTTTCTAATT
57174932 ATTTTCATTATTTCTAAT
1 ATTTTC-TT-TTTCTAAT
57174950 CTGTATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTCTTTTTCTAATT
Found at i:57176810 original size:18 final size:18
Alignment explanation
Indices: 57176784--57176836 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 18
57176774 AAAATTCAGA
57176784 AAAATATAAAAATTATTTT
1 AAAA-ATAAAAATTATTTT
*
57176803 AAAAAT-AAAATTAATTT
1 AAAAATAAAAATTATTTT
57176820 AAAAATTATAAAATTAT
1 AAAAA-TA-AAAATTAT
57176837 AAAAAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 15 0.52
18 3 0.10
19 4 0.14
20 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATAAAAATTATTTT
Found at i:57181341 original size:43 final size:43
Alignment explanation
Indices: 57181279--57181574 Score: 292
Period size: 43 Copynumber: 6.9 Consensus size: 43
57181269 TTTTTCACAT
* * * *
57181279 AAACACCGCTGAAGGTCATGACCTTAAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
* * *
57181322 AAACGCCGCTATAGATCATGACCTTTAGTGGCGCTTTTGT-ATC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCA-C
* * **
57181365 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
*
57181408 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTAT-AGC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCA-C
* * * *** * *
57181451 AATCGCCGCTAAAGGTAATGTTGTTTAGCGGCGCTTTCATTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
* * * ** **
57181494 AAACGCCACTAAATAACATGACCTTTAGCAACGCTTTTATCGT
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
* *
57181537 AAACGCTGCTAAAGAACATGACCTTTAGCGGCG-TTTTA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTA
57181575 CTAAAAACGC
Statistics
Matches: 202, Mismatches: 47, Indels: 9
0.78 0.18 0.03
Matches are distributed among these distances:
42 7 0.03
43 193 0.96
44 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
Found at i:57181395 original size:86 final size:86
Alignment explanation
Indices: 57181290--57181574 Score: 329
Period size: 86 Copynumber: 3.3 Consensus size: 86
57181280 AACACCGCTG
** * *
57181290 AAGGTCATGACCTTAAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGTGGCG
1 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
* *
57181355 CTTTTGTATCAAACGCCACTA
66 CTTTTATAGCAAACGCCACTA
57181376 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
1 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
* *
57181441 CTTTTATAGCAATCGCCGCTA
66 CTTTTATAGCAAACGCCACTA
* * * * * * * * **
57181462 AAGGTAATGTTGTTTAGCGGCGCTTTCATTACAAACGCCACTAAATAACATGACCTTTAGCAACG
1 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
* * **
57181527 CTTTTATCGTAAACGCTGCTA
66 CTTTTATAGCAAACGCCACTA
** **
57181548 AAGAACATGACCTTTAGCGGCG-TTTTA
1 AAGGTCATGTTCTTTAGCGGCGCTTTTA
57181575 CTAAAAACGC
Statistics
Matches: 170, Mismatches: 29, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
85 4 0.02
86 166 0.98
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (86 bp):
AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
CTTTTATAGCAAACGCCACTA
Found at i:57181892 original size:21 final size:21
Alignment explanation
Indices: 57181867--57181923 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
57181857 GTCGTATTTT
*
57181867 CTGCTGCCTTTGCTTCCCTCG
1 CTGCTGCCTCTGCTTCCCTCG
* *
57181888 TTGCTACCTCTGCTTCCCTCG
1 CTGCTGCCTCTGCTTCCCTCG
57181909 CTGCTGCCTCTGCTT
1 CTGCTGCCTCTGCTT
57181924 TAAGTTGTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.02, C:0.42, G:0.18, T:0.39
Consensus pattern (21 bp):
CTGCTGCCTCTGCTTCCCTCG
Found at i:57187436 original size:9 final size:9
Alignment explanation
Indices: 57187422--57187831 Score: 124
Period size: 9 Copynumber: 43.9 Consensus size: 9
57187412 TAAGTATAAT
57187422 TAAGTTATG
1 TAAGTTATG
57187431 TAAGTTATG
1 TAAGTTATG
* *
57187440 ATATGATATATA
1 -TAAG-T-TATG
57187452 TAAGTTAT-
1 TAAGTTATG
*
57187460 TAAGCTATG
1 TAAGTTATG
57187469 TAAGTTATG
1 TAAGTTATG
*
57187478 TGAGTTATG
1 TAAGTTATG
* *
57187487 ATATGATATATA
1 -TAAG-T-TATG
*
57187499 TAATTTAT-
1 TAAGTTATG
57187507 TAAGTTATG
1 TAAGTTATG
*
57187516 TATG-TATG
1 TAAGTTATG
*
57187524 TGAGTTATG
1 TAAGTTATG
57187533 TAAGTTATG
1 TAAGTTATG
* * *
57187542 ATATGATATA
1 -TAAGTTATG
*
57187552 T-ATTTATG
1 TAAGTTATG
57187560 T-A-TTATG
1 TAAGTTATG
57187567 TAAGTTATGTG
1 TAAGTTA--TG
** *
57187578 TTTGTTTTG
1 TAAGTTATG
57187587 TAAGTTATAG
1 TAAGTTAT-G
* *
57187597 TATGATATATA
1 TAAG-T-TATG
57187608 TAAGTTAT-
1 TAAGTTATG
57187616 TAAGTTATG
1 TAAGTTATG
*
57187625 TATG-TATG
1 TAAGTTATG
*
57187633 TGAGTTATG
1 TAAGTTATG
57187642 TAAGTTATG
1 TAAGTTATG
* *
57187651 ATCTAATATATATA
1 ---TAA-GT-TATG
57187665 TAAGTTAT-
1 TAAGTTATG
*
57187673 TAAGTTAAG
1 TAAGTTATG
* *
57187682 ATCCAAAGTTTTTTT
1 -T---AAG--TTATG
* *
57187697 TAA-TTCTT
1 TAAGTTATG
57187705 TAAAGTTATG
1 T-AAGTTATG
*
57187715 TAAATTATG
1 TAAGTTATG
57187724 TAAGTTATG
1 TAAGTTATG
*
57187733 ATATGGTTAT-
1 -TA-AGTTATG
57187743 TAAGTTATG
1 TAAGTTATG
*
57187752 CAAGTTATG
1 TAAGTTATG
*
57187761 TGAGTTATG
1 TAAGTTATG
* *
57187770 TAAATTATA
1 TAAGTTATG
*
57187779 TAAATTATG
1 TAAGTTATG
* *
57187788 TAAATTTTG
1 TAAGTTATG
* * *
57187797 ATATGATATA
1 -TAAGTTATG
*
57187807 T-ATTTATG
1 TAAGTTATG
57187815 TAAGTTATG
1 TAAGTTATG
*
57187824 TAAATTAT
1 TAAGTTAT
57187832 ATATTCATTT
Statistics
Matches: 294, Mismatches: 69, Indels: 76
0.67 0.16 0.17
Matches are distributed among these distances:
7 6 0.02
8 61 0.21
9 148 0.50
10 30 0.10
11 27 0.09
12 12 0.04
13 4 0.01
14 4 0.01
15 2 0.01
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:57187475 original size:47 final size:47
Alignment explanation
Indices: 57187422--57187641 Score: 201
Period size: 47 Copynumber: 4.4 Consensus size: 47
57187412 TAAGTATAAT
*
57187422 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGCTATG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATG
* *
57187469 TAAGTTATGTGAGTTATGATATGATATATATAATTTATTAAGTTATGTATG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG---T-TATG
*
57187520 TATGTGAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTG
1 TA----AGTTATGTAAGTTATGATATGATATATA--TAAG--TTAT-TAAGTTA--TG
** *
57187578 TTTGTTTTGTAAGTTAT-AGTATGATATATATAAGTTATTAAGTTATG
1 TAAGTTATGTAAGTTATGA-TATGATATATATAAGTTATTAAGTTATG
* *
57187625 TATG-TATGTGAGTTATG
1 TAAGTTATGTAAGTTATG
57187642 TAAGTTATGA
Statistics
Matches: 143, Mismatches: 13, Indels: 34
0.75 0.07 0.18
Matches are distributed among these distances:
46 10 0.07
47 45 0.31
49 7 0.05
50 4 0.03
51 6 0.04
52 3 0.02
53 1 0.01
54 24 0.17
55 27 0.19
56 2 0.01
57 3 0.02
58 3 0.02
59 4 0.03
60 4 0.03
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.47
Consensus pattern (47 bp):
TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATG
Found at i:57187514 original size:55 final size:56
Alignment explanation
Indices: 57187452--57187679 Score: 251
Period size: 55 Copynumber: 4.1 Consensus size: 56
57187442 ATGATATATA
* * *
57187452 TAAGTTAT-TAAGCTATGTAAGTTATGTGAGTTATGA-TATGATATATATAATTTAT
1 TAAGTTATGTAAG-TATGTGAGTTATGTAAGTTATGACTATGATATATATAAGTTAT
*
57187507 TAAGTTATGTATGTATGTGAGTTATGTAAGTTATGA-TATGATATATAT---TTAT
1 TAAGTTATGTAAGTATGTGAGTTATGTAAGTTATGACTATGATATATATAAGTTAT
* * *
57187559 GT-A-TTATGTAAGTTATGTGTTTGTTTTGTAAGTTAT-AGTATGATATATATAAGTTAT
1 -TAAGTTATGTAAG-TATGTG--AGTTATGTAAGTTATGACTATGATATATATAAGTTAT
*
57187616 TAAGTTATGTATGTATGTGAGTTATGTAAGTTATGATCTAAT-ATATATATAAGTTAT
1 TAAGTTATGTAAGTATGTGAGTTATGTAAGTTATGA-CT-ATGATATATATAAGTTAT
57187673 TAAGTTA
1 TAAGTTA
57187680 AGATCCAAAG
Statistics
Matches: 149, Mismatches: 10, Indels: 26
0.81 0.05 0.14
Matches are distributed among these distances:
51 8 0.05
52 11 0.07
53 2 0.01
54 25 0.17
55 54 0.36
56 5 0.03
57 34 0.23
58 10 0.07
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (56 bp):
TAAGTTATGTAAGTATGTGAGTTATGTAAGTTATGACTATGATATATATAAGTTAT
Found at i:57187620 original size:109 final size:103
Alignment explanation
Indices: 57187424--57187676 Score: 339
Period size: 109 Copynumber: 2.4 Consensus size: 103
57187414 AGTATAATTA
*
57187424 AGTTATGTAAGTTATGATATGATATATA-TAAGTTATTAAGCTATGTAAGTTATGTGAGTTATGA
1 AGTTATGTAAGTTATGATATGATATATATTAAGTTATTAAGCTATGTAAGTTATGTAAGTTATGA
*
57187488 TATGATATATATAATTTATTAAGTTATGTATGTATGTG
66 TATGATATATATAAGTTATTAAGTTATGTATGTATGTG
* * ** *
57187526 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTGTTTGTTTTGTAAG
1 AGTTATGTAAGTTATGATATGATATATA-TTAAG--TTAT-TAAGCTA--TGTAAGTTATGTAAG
57187591 TTAT-AGTATGATATATATAAGTTATTAAGTTATGTATGTATGTG
60 TTATGA-TATGATATATATAAGTTATTAAGTTATGTATGTATGTG
* *
57187635 AGTTATGTAAGTTATGATCTAATATATATATAAGTTATTAAG
1 AGTTATGTAAGTTATGATATGATATATAT-TAAGTTATTAAG
57187677 TTAAGATCCA
Statistics
Matches: 132, Mismatches: 10, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
102 28 0.21
104 3 0.02
106 8 0.06
107 10 0.08
108 2 0.02
109 81 0.61
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (103 bp):
AGTTATGTAAGTTATGATATGATATATATTAAGTTATTAAGCTATGTAAGTTATGTAAGTTATGA
TATGATATATATAAGTTATTAAGTTATGTATGTATGTG
Found at i:57189494 original size:63 final size:63
Alignment explanation
Indices: 57189403--57189539 Score: 175
Period size: 63 Copynumber: 2.2 Consensus size: 63
57189393 TTAAAAGATA
* * * * * *
57189403 AGGATCACACGGGTCAGGGACACAGACGTGTGTCCAGGCCGCGTGACTTACTGTTTGTGATTT
1 AGGACCACACGAGTCAGAGACACAGACGTGTGTCCAGGCCGCGTGACTCACTATTTATGATTT
* * * *
57189466 AGGACCACACGAGTCAGAGACACGGACGTGTGTCCAGGTCGTGTGACTCATTATTTATGATTT
1 AGGACCACACGAGTCAGAGACACAGACGTGTGTCCAGGCCGCGTGACTCACTATTTATGATTT
*
57189529 AGGACCTCACG
1 AGGACCACACG
57189540 GGCAAACAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (63 bp):
AGGACCACACGAGTCAGAGACACAGACGTGTGTCCAGGCCGCGTGACTCACTATTTATGATTT
Found at i:57192434 original size:17 final size:17
Alignment explanation
Indices: 57192398--57192446 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
57192388 TATGTTCAAT
57192398 GTTTATATATAATTTTTAGA
1 GTTTATATAT-A--TTTAGA
57192418 GTTTATATATATTTAGA
1 GTTTATATATATTTAGA
* *
57192435 TTTTTTATATAT
1 GTTTATATATAT
57192447 ATTTCATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 16 0.59
19 1 0.04
20 10 0.37
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (17 bp):
GTTTATATATATTTAGA
Found at i:57192459 original size:19 final size:19
Alignment explanation
Indices: 57192419--57192459 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
57192409 ATTTTTAGAG
*
57192419 TTTATATATATTTAGATTT
1 TTTATATATATTTACATTT
57192438 TTTATATATATTT-CATTAT
1 TTTATATATATTTACATT-T
57192457 TTT
1 TTT
57192460 TATTTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATATATATTTACATTT
Found at i:57192551 original size:19 final size:18
Alignment explanation
Indices: 57192527--57192574 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
57192517 AAATTATGTG
* *
57192527 TATATATTTCTTTATTTTT
1 TATATAATT-TTTATATTT
57192546 TATATAATTTTTATATTT
1 TATATAATTTTTATATTT
*
57192564 TA-ACAATTTTT
1 TATATAATTTTT
57192575 TAAAGTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 8 0.31
18 10 0.38
19 8 0.31
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
TATATAATTTTTATATTT
Found at i:57192933 original size:13 final size:12
Alignment explanation
Indices: 57192898--57192924 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
57192888 TTATTTGTTT
57192898 TTTGTTTTAATA
1 TTTGTTTTAATA
57192910 TTTGTTTTAATA
1 TTTGTTTTAATA
57192922 TTT
1 TTT
57192925 TTATTTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTGTTTTAATA
Found at i:57200804 original size:25 final size:25
Alignment explanation
Indices: 57200770--57200819 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
57200760 TGGCTTGTGC
*
57200770 TGCAGCATGCTGGCTCA-CTTCATCA
1 TGCAGCATGCTAGC-CATCTTCATCA
57200795 TGCAGCATGCTAGCCATCTTCATCA
1 TGCAGCATGCTAGCCATCTTCATCA
57200820 CTCCTCCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (25 bp):
TGCAGCATGCTAGCCATCTTCATCA
Found at i:57205303 original size:25 final size:25
Alignment explanation
Indices: 57205269--57205318 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
57205259 TGGCTTGTGC
*
57205269 TGCAGCATGCTGGCTCA-CTTCATCA
1 TGCAGCATGCTAGC-CATCTTCATCA
57205294 TGCAGCATGCTAGCCATCTTCATCA
1 TGCAGCATGCTAGCCATCTTCATCA
57205319 ATAATATGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (25 bp):
TGCAGCATGCTAGCCATCTTCATCA
Found at i:57206991 original size:17 final size:16
Alignment explanation
Indices: 57206966--57207011 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
57206956 AAAATACAGT
57206966 CCGTATTTTTAGAAAA
1 CCGTATTTTTAGAAAA
* * *
57206982 CCTTTATTTTCATAAAA
1 CC-GTATTTTTAGAAAA
57206999 CCGTATTTTTAGA
1 CCGTATTTTTAGA
57207012 CACGCATTAC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (16 bp):
CCGTATTTTTAGAAAA
Found at i:57207877 original size:32 final size:32
Alignment explanation
Indices: 57207798--57207878 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
57207788 TACCCGTGTG
57207798 GCTT-GCCCGTGTGGGCCCACACACCCAGATTA
1 GCTTAGCCCGTGT-GGCCCACACACCCAGATTA
* * *
57207830 GCTTTGCCCCGTGTGGCCCACACCCCCA-ATTT
1 GCTTAG-CCCGTGTGGCCCACACACCCAGATTA
*
57207862 GGTCTAGCCCGTGTGGC
1 GCT-TAGCCCGTGTGGC
57207879 TTACACGACC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
32 19 0.45
33 16 0.38
34 7 0.17
ACGTcount: A:0.14, C:0.38, G:0.26, T:0.22
Consensus pattern (32 bp):
GCTTAGCCCGTGTGGCCCACACACCCAGATTA
Found at i:57210232 original size:27 final size:27
Alignment explanation
Indices: 57210202--57210351 Score: 237
Period size: 27 Copynumber: 5.5 Consensus size: 27
57210192 ATTAAGTCCA
* * *
57210202 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAACTCG
*
57210229 CACACTTAGTGCTACATAATCAAACTCG
1 CACACTTAGTGCTACATAGTC-AACTCG
57210257 CACACTTAGTGCTACATAGTCAACTCG
1 CACACTTAGTGCTACATAGTCAACTCG
57210284 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTC-AACTCG
*
57210312 CACACTTAGTGCTACATAGTCAATTCG
1 CACACTTAGTGCTACATAGTCAACTCG
57210339 CACACTTAGTGCT
1 CACACTTAGTGCT
57210352 GCACAATTTA
Statistics
Matches: 117, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 64 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAACTCG
Found at i:57210286 original size:55 final size:55
Alignment explanation
Indices: 57210202--57210376 Score: 260
Period size: 55 Copynumber: 3.2 Consensus size: 55
57210192 ATTAAGTCCA
* * *
57210202 CACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCG
1 CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCG
*
57210257 CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCG
* * * * *
57210312 CACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCG
1 CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACTCG
57210368 CACACTTAG
1 CACACTTAG
57210377 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (55 bp):
CACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCG
Found at i:57218091 original size:27 final size:27
Alignment explanation
Indices: 57218074--57218221 Score: 221
Period size: 27 Copynumber: 5.6 Consensus size: 27
57218064 ATATTAAGTC
* *
57218074 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
57218101 CGCACACTTAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
57218128 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
57218155 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
57218183 CGCACACTTAGTGCTAC---ATCAATT
1 CGCACACTTAGTGCTACATAATCAACT
57218207 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57218222 GCACAATTTA
Statistics
Matches: 115, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.16
25 2 0.02
27 74 0.64
28 21 0.18
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:57218156 original size:54 final size:54
Alignment explanation
Indices: 57218074--57218246 Score: 226
Period size: 54 Copynumber: 3.2 Consensus size: 54
57218064 ATATTAAGTC
* *
57218074 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATC-AACT
1 CGCACACTTAGTGCTACAT-ATCAACTCGCACACTTAGTGCTACATAATCAAACT
*
57218128 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATA-TCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
57218183 CGCACACTTAGTGCTAC--ATCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
57218236 CGCACACTTAG
1 CGCACACTTAG
57218247 CGCCAATCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
52 23 0.21
53 18 0.17
54 45 0.42
55 21 0.20
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.25
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:57218193 original size:82 final size:78
Alignment explanation
Indices: 57218074--57218221 Score: 224
Period size: 79 Copynumber: 1.8 Consensus size: 78
57218064 ATATTAAGTC
*
57218074 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAG
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTAC---ATCAACTCGCACACTTAG
57218139 TGCTACATAGTCAACT
63 TGCTACATAGTCAACT
* * *
57218155 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATCAATTCGCACACTTAGTG
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATCAACTCGCACACTTAGTG
57218220 CT
65 CT
57218222 GCACAATTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
79 21 0.34
81 20 0.32
82 21 0.34
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (78 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATCAACTCGCACACTTAGTGC
TACATAGTCAACT
Found at i:57228848 original size:32 final size:32
Alignment explanation
Indices: 57228812--57228893 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 32
57228802 AATCCATTTC
* *
57228812 CAAAATTTTTATGTCTCTAAAATTT-TGTGTTT
1 CAAAATTTTTAT-TCTCAAAAATTTCCGTGTTT
** *
57228844 CAAAATTTTCGTTTTCAAAAATTTCCGTGTTT
1 CAAAATTTTTATTCTCAAAAATTTCCGTGTTT
*
57228876 CAAAATTTTT-TTTTCAAA
1 CAAAATTTTTATTCTCAAA
57228894 TTTTCGTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
31 18 0.42
32 25 0.58
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.50
Consensus pattern (32 bp):
CAAAATTTTTATTCTCAAAAATTTCCGTGTTT
Found at i:57228850 original size:15 final size:15
Alignment explanation
Indices: 57228830--57228897 Score: 70
Period size: 16 Copynumber: 4.5 Consensus size: 15
57228820 TTATGTCTCT
57228830 AAAATTTTGTGTTTC
1 AAAATTTTGTGTTTC
57228845 AAAATTTTCGT-TTTC
1 AAAATTTT-GTGTTTC
*
57228860 AAAAATTTCCGTGTTTC
1 -AAAATTT-TGTGTTTC
*
57228877 AAAATTTT-TTTTTC
1 AAAATTTTGTGTTTC
57228891 -AAATTTT
1 AAAATTTT
57228898 CGTATTCAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
13 7 0.15
14 5 0.11
15 12 0.26
16 18 0.39
17 4 0.09
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.53
Consensus pattern (15 bp):
AAAATTTTGTGTTTC
Found at i:57228937 original size:12 final size:13
Alignment explanation
Indices: 57228920--57228948 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
57228910 TCCTCTTGTC
57228920 AAAA-TTTGTTTT
1 AAAATTTTGTTTT
57228932 AAAATTTTGTTTT
1 AAAATTTTGTTTT
57228945 AAAA
1 AAAA
57228949 AAAATTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
AAAATTTTGTTTT
Found at i:57240860 original size:122 final size:122
Alignment explanation
Indices: 57240642--57240959 Score: 503
Period size: 122 Copynumber: 2.6 Consensus size: 122
57240632 AATTTTTTAA
*
57240642 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTTAGTTTA
57240707 TGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
65 TGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
*
57240765 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTTAGTTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTTAGTTTA
*
57240829 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
65 TGTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* * * * * *
57240887 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG-GCAC--GCCGAGGTATTTTTAGTT
57240952 TATGTTTT
63 TATGTTTT
57240960 TTTCAATCTA
Statistics
Matches: 180, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
122 120 0.67
123 37 0.21
125 23 0.13
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (122 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGTTTAT
GTTTTAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:57240964 original size:16 final size:17
Alignment explanation
Indices: 57240943--57240976 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
57240933 TGCTGAGGTA
*
57240943 TTTTCAATTTATG-TTT
1 TTTTCAATCTATGCTTT
57240959 TTTTCAATCTATGCTTT
1 TTTTCAATCTATGCTTT
57240976 T
1 T
57240977 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTCAATCTATGCTTT
Found at i:57241153 original size:72 final size:73
Alignment explanation
Indices: 57240960--57241374 Score: 647
Period size: 72 Copynumber: 5.7 Consensus size: 73
57240950 TTTATGTTTT
* * * * ** *
57240960 TTTCAATCTATGCTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGT
1 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
57241025 TGAGGTAA
66 TGAGGTAA
*
57241033 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 -TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
57241098 TTGAGGTAA
65 TTGAGGTAA
*
57241107 TTTCAATTTTTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
57241171 TGAGGTAA
66 TGAGGTAA
* **
57241179 TTTCAATTTTTG-TTTTCAAAGCTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
*
57241243 TGAGGTAT
66 TGAGGTAA
57241251 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
*
57241316 TGAGGTAT
66 TGAGGTAA
* **
57241324 TTTCAATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
57241375 ACTTTTAATT
Statistics
Matches: 321, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
72 166 0.52
73 90 0.28
74 65 0.20
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
TGAGGTAA
Found at i:57241315 original size:145 final size:145
Alignment explanation
Indices: 57240959--57241374 Score: 647
Period size: 145 Copynumber: 2.9 Consensus size: 145
57240949 ATTTATGTTT
* * * ** *
57240959 TTTTCAATCTATGCTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
1 TTTTCAATTTATGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
57241024 TTGAGGTAATTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
66 TTGAGGTAA-TTTCAATTTCTGCTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCT
57241089 CAAGACACGTTGAGGTA
129 CAAGACACGTTGAGGTA
* *
57241106 ATTTCAATTTTTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTATGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* *
57241170 TTGAGGTAATTTCAATTTTTG-TTTTCAAAGCTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 TTGAGGTAATTTCAATTTCTGCTTTTCAAA-ATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
57241234 AAGACACGTTGAGGTA
130 AAGACACGTTGAGGTA
*
57241250 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTATGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * **
57241315 TTGAGGTATTTTCAATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 TTGAGGTAATTTCAATTTCTGCTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAG
57241375 ACTTTTAATT
Statistics
Matches: 248, Mismatches: 18, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
144 67 0.27
145 108 0.44
146 63 0.25
147 10 0.04
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (145 bp):
TTTTCAATTTATGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGCTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTA
Found at i:57241352 original size:217 final size:218
Alignment explanation
Indices: 57240973--57241374 Score: 682
Period size: 217 Copynumber: 1.8 Consensus size: 218
57240963 CAATCTATGC
* ** *
57240973 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATTTTC
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTC
57241038 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
57241103 GTAATTTCAATTTTTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
131 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
57241168 CGTTGAGGTAATTTCAATTTTTG
196 CGTTGAGGTAATTTCAATTTTTG
**
57241191 TTTTCAAAGCTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTC
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTC
*
57241255 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* **
57241320 GTATTTTCAATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
131 GTAATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
57241375 ACTTTTAATT
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
217 111 0.65
218 61 0.35
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (218 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTC
AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGTTGAGGTAATTTCAATTTTTG
Found at i:57241412 original size:54 final size:54
Alignment explanation
Indices: 57241323--57241912 Score: 934
Period size: 54 Copynumber: 11.0 Consensus size: 54
57241313 CGTTGAGGTA
* *
57241323 TTTTCAATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGAC
1 TTTT-AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
57241377 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
57241431 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
57241485 TTTTAATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
57241539 --TT--TTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
57241588 TTTTAATTTCTGA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCT-ATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
57241642 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
57241696 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
57241750 TTTTAATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
57241804 --TT--TTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * *
57241856 TTTTGTAAATTCT-GTTTTCAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCC
1 -TTT-TAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
57241911 TT
1 TT
57241913 GGCTCACGTG
Statistics
Matches: 504, Mismatches: 16, Indels: 32
0.91 0.03 0.06
Matches are distributed among these distances:
49 34 0.07
50 24 0.05
51 2 0.00
52 39 0.08
53 23 0.05
54 337 0.67
55 35 0.07
56 1 0.00
57 5 0.01
58 4 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (54 bp):
TTTTAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:57241647 original size:265 final size:266
Alignment explanation
Indices: 57241323--57241912 Score: 1051
Period size: 265 Copynumber: 2.2 Consensus size: 266
57241313 CGTTGAGGTA
* *
57241323 TTTTCAATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGACTTTTAATTTC
1 TTTTTAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
57241387 TATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAA
65 TATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAA
57241452 AATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTATTTTTCAAAAACCAACTCAT
130 AATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTATTTTTCAAAAACCAACTCAT
57241517 ATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTC-AAAATCAACTCATATTGCGAGAGGTGAG
195 ATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
57241581 TTGAGCC
260 TTGAGCC
57241588 -TTTTAATTTCTGATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TTTTTAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
*
57241652 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAA
65 TATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAA
*
57241717 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAACCAACTCAT
130 AATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTATTTTTCAAAAACCAACTCAT
57241782 ATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
195 ATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTG
57241847 AGTTGAGCC
258 AGTTGAGCC
* * *
57241856 TTTTGTAAATTCTGTTTTCAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTT
1 TTTT-TAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
57241913 GGCTCACGTG
Statistics
Matches: 311, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
264 16 0.05
265 208 0.67
268 35 0.11
269 44 0.14
270 8 0.03
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (266 bp):
TTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCT
ATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAA
ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTATTTTTCAAAAACCAACTCATA
TTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCC
Found at i:57242233 original size:30 final size:30
Alignment explanation
Indices: 57242182--57242238 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
57242172 TTAAAAATAA
*
57242182 AAATTGCATTTTGACCCCTAAACTTTTCATT
1 AAATTGCATTTTGAACCCTAAA-TTTTCATT
*
57242213 AAATTTCATTTT-AACCCTAAATTTTC
1 AAATTGCATTTTGAACCCTAAATTTTC
57242239 TAAAAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 8 0.33
31 11 0.46
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTGCATTTTGAACCCTAAATTTTCATT
Found at i:57242251 original size:29 final size:31
Alignment explanation
Indices: 57242179--57242252 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
57242169 ATTTTAAAAA
* *
57242179 TAAAAATTGCATTTTGACCCCTAAACTTTTC
1 TAAAAATTACATTTTGAACCCTAAACTTTTC
* *
57242210 -ATTAAATTTCATTTT-AACCCTAAA-TTTTC
1 TA-AAAATTACATTTTGAACCCTAAACTTTTC
57242239 TAAAAATTACATTT
1 TAAAAATTACATTT
57242253 AGCCCCAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
29 15 0.42
30 10 0.28
31 11 0.31
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.43
Consensus pattern (31 bp):
TAAAAATTACATTTTGAACCCTAAACTTTTC
Found at i:57242600 original size:3 final size:3
Alignment explanation
Indices: 57242592--57242646 Score: 74
Period size: 3 Copynumber: 17.0 Consensus size: 3
57242582 GCTCGGTTTT
57242592 GAA GAA GAA GAA GAA GGAA GAA GAA GAA GAA GAA GAAA GAGA GAGA GAA
1 GAA GAA GAA GAA GAA -GAA GAA GAA GAA GAA GAA G-AA GA-A GA-A GAA
57242641 GAA GAA
1 GAA GAA
57242647 AGAAAAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
3 36 0.73
4 13 0.27
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:57242649 original size:22 final size:19
Alignment explanation
Indices: 57242592--57242650 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
57242582 GCTCGGTTTT
*
57242592 GAAGAAGAAGAAGAAGGAA
1 GAAGAAGAAGAAGAAGAAA
57242611 GAAGAAGAAGAAGAAGAAA
1 GAAGAAGAAGAAGAAGAAA
57242630 G-AG-AGAGAGAAGAAGAAA
1 GAAGAAGA-AGAAGAAGAAA
57242648 GAA
1 GAA
57242651 AAAAAAAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
17 3 0.08
18 14 0.38
19 20 0.54
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (19 bp):
GAAGAAGAAGAAGAAGAAA
Found at i:57242741 original size:18 final size:18
Alignment explanation
Indices: 57242704--57242746 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
57242694 AACCGGGTAT
* * *
57242704 AACCCGACCCGATCCGGC
1 AACCCAACCCGACCCAGC
57242722 AACCCAACCCGACCCAGC
1 AACCCAACCCGACCCAGC
57242740 AAGCCCA
1 AA-CCCA
57242747 TTAACCAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.30, C:0.51, G:0.16, T:0.02
Consensus pattern (18 bp):
AACCCAACCCGACCCAGC
Found at i:57242949 original size:10 final size:10
Alignment explanation
Indices: 57242934--57243001 Score: 55
Period size: 8 Copynumber: 7.7 Consensus size: 10
57242924 CAGCAGAAAA
57242934 AAAAAGGAAG
1 AAAAAGGAAG
57242944 AAAAA-GAAG
1 AAAAAGGAAG
57242953 -AAAA--AAG
1 AAAAAGGAAG
*
57242960 AAAAAAG-A-
1 AAAAAGGAAG
57242968 AAAAAGGAA-
1 AAAAAGGAAG
*
57242977 AAAAAAG-A-
1 AAAAAGGAAG
57242985 AAAAAGGAAG
1 AAAAAGGAAG
57242995 AAAAAGG
1 AAAAAGG
57243002 GGTTCAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
7 3 0.06
8 21 0.43
9 13 0.27
10 12 0.24
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (10 bp):
AAAAAGGAAG
Found at i:57242962 original size:7 final size:7
Alignment explanation
Indices: 57242945--57242990 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
57242935 AAAAGGAAGA
57242945 AAAAGAAG
1 AAAA-AAG
57242953 AAAAAAG
1 AAAAAAG
57242960 AAAAAAG
1 AAAAAAG
57242967 AAAAAAGG
1 AAAAAA-G
57242975 AAAAAAAAG
1 --AAAAAAG
57242984 AAAAAAG
1 AAAAAAG
57242991 GAAGAAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
7 23 0.66
8 5 0.14
9 1 0.03
10 6 0.17
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:57242966 original size:17 final size:18
Alignment explanation
Indices: 57242933--57242999 Score: 97
Period size: 17 Copynumber: 3.9 Consensus size: 18
57242923 CCAGCAGAAA
57242933 AAAAAAGGAAG-AAAAAG
1 AAAAAAGGAAGAAAAAAG
57242950 AAGAAAA--AAGAAAAAAG
1 AA-AAAAGGAAGAAAAAAG
57242967 AAAAAAGGAA-AAAAAAG
1 AAAAAAGGAAGAAAAAAG
57242984 AAAAAAGGAAGAAAAA
1 AAAAAAGGAAGAAAAA
57243000 GGGGTTCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.16
17 27 0.60
18 11 0.24
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAAAAGGAAGAAAAAAG
Found at i:57242971 original size:24 final size:24
Alignment explanation
Indices: 57242928--57242990 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
57242918 GCAGCCCAGC
*
57242928 AGAAAAAA-AAAGGAAGAAAAA-GA
1 AGAAAAAAGAAA-AAAGAAAAAGGA
57242951 AGAAAAAAGAAAAAAGAAAAAAGGA
1 AGAAAAAAGAAAAAAG-AAAAAGGA
57242976 A-AAAAAAGAAAAAAG
1 AGAAAAAAGAAAAAAG
57242991 GAAGAAAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
23 11 0.31
24 22 0.61
25 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (24 bp):
AGAAAAAAGAAAAAAGAAAAAGGA
Found at i:57243592 original size:20 final size:22
Alignment explanation
Indices: 57243551--57243593 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
57243541 AATTTTGTGT
*
57243551 AAAAAAATCCAGTGTTTTCAAA
1 AAAAAAATCCAGTGTTTCCAAA
57243573 AAAAAAATCCA-T-TTTCCAAA
1 AAAAAAATCCAGTGTTTCCAAA
57243593 A
1 A
57243594 TTTTTAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 1 0.05
22 11 0.55
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAAAAATCCAGTGTTTCCAAA
Found at i:57243663 original size:18 final size:17
Alignment explanation
Indices: 57243589--57243751 Score: 159
Period size: 17 Copynumber: 9.4 Consensus size: 17
57243579 ATCCATTTTC
* *
57243589 CAAAATTTTTAGTGTCTT
1 CAAAAATTTTCGTGT-TT
*
57243607 CTAAAAATTTTTGTGTTT
1 C-AAAAATTTTCGTGTTT
57243625 CAAAAATTTTCGT-TTT
1 CAAAAATTTTCGTGTTT
*
57243641 CAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTT
57243658 CAAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTG-TTT
* *
57243676 CAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTT
** *
57243693 CAAAAATCCTCTTGTTTT
1 CAAAAATTTTCGTG-TTT
57243711 CAAAAA-TTTCGGTGTTT
1 CAAAAATTTTC-GTGTTT
**
57243728 TGAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTG-TTT
57243746 CAAAAA
1 CAAAAA
57243752 AAAATATCGT
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
16 15 0.13
17 51 0.43
18 41 0.34
19 12 0.10
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (17 bp):
CAAAAATTTTCGTGTTT
Found at i:57243751 original size:35 final size:34
Alignment explanation
Indices: 57243589--57243751 Score: 168
Period size: 35 Copynumber: 4.7 Consensus size: 34
57243579 ATCCATTTTC
* * * *
57243589 CAAAATTTTTAGTGTCTTCTAAAAATTTTTGTGTTT
1 CAAAAATTTTCGTGTTTTC-AAAAA-TTTCGTGTTT
57243625 CAAAAATTTTC--GTTTTCAAAAATTTCCGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTT-CGTGTTT
* *
57243658 CAAAAATTTTCGTGTTTTCAAAATTTTTCGTATTT
1 CAAAAATTTTCGTGTTTTCAAAA-ATTTCGTGTTT
** *
57243693 CAAAAATCCTCTTGTTTTCAAAAATTTCGGTGTTT
1 CAAAAATTTTCGTGTTTTCAAAAATTTC-GTGTTT
**
57243728 TGAAAATTTTCGTGTTTTCAAAAA
1 CAAAAATTTTCGTGTTTTCAAAAA
57243752 AAAATATCGT
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
32 3 0.03
33 22 0.21
34 9 0.08
35 60 0.57
36 12 0.11
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (34 bp):
CAAAAATTTTCGTGTTTTCAAAAATTTCGTGTTT
Found at i:57243764 original size:38 final size:37
Alignment explanation
Indices: 57243712--57243840 Score: 120
Period size: 35 Copynumber: 3.4 Consensus size: 37
57243702 TCTTGTTTTC
*
57243712 AAAAATTTCGGTGTTTTGAAAATTTTCGTGTTTTCAAAA
1 AAAAATATC-GTGTTTT-AAAATTTTCGTGTTTTCAAAA
*
57243751 AAAAATATCGTGTTTCATAAATTTT-G-GTTTT-AAAA
1 AAAAATATCGTGTTTTA-AAATTTTCGTGTTTTCAAAA
** * *
57243786 AAAAATATTATGTCTTAAAATTCTCGTGTTTTCAAAA
1 AAAAATATCGTGTTTTAAAATTTTCGTGTTTTCAAAA
*
57243823 CAAGAAATTCTCGTGTTT
1 -AA-AAA-TATCGTGTTT
57243841 CAATCGGATC
Statistics
Matches: 72, Mismatches: 11, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
34 6 0.08
35 18 0.25
36 10 0.14
37 6 0.08
38 15 0.21
39 11 0.15
40 6 0.08
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (37 bp):
AAAAATATCGTGTTTTAAAATTTTCGTGTTTTCAAAA
Found at i:57246665 original size:18 final size:18
Alignment explanation
Indices: 57246638--57246730 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
57246628 TACGACCGTT
57246638 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* * *
57246656 TACGGCACTATTTACATA
1 TACGGTACTATTCACGTA
*
57246674 TACGGTACTATTCACATA
1 TACGGTACTATTCACGTA
*
57246692 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
57246710 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
57246728 TAC
1 TAC
57246731 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:57249824 original size:8 final size:8
Alignment explanation
Indices: 57249811--57249844 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
57249801 GATTCTCGGC
57249811 ATGGAAAT
1 ATGGAAAT
57249819 ATGGAAAT
1 ATGGAAAT
57249827 ATGGAAAT
1 ATGGAAAT
57249835 ATGGAAAT
1 ATGGAAAT
57249843 AT
1 AT
57249845 CGACGTACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (8 bp):
ATGGAAAT
Found at i:57252008 original size:144 final size:144
Alignment explanation
Indices: 57251564--57251998 Score: 522
Period size: 144 Copynumber: 3.0 Consensus size: 144
57251554 GATAAGCTGC
* * * *
57251564 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTAGACAGATACAATTGACTA
1 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
* * * *
57251629 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAAAAAACATATTGTCAAAAAGGCTAAG
66 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAGAAAACATATTTTGAAAAAGGATAAG
57251694 AGTAGTTAAGTTGG
131 AGTAGTTAAGTTGG
* *
57251708 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTACTGGACAGATCCAATTTACTG
1 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
* * ** * * *
57251773 AGAGATTTAAGCATCCCTACCTCTTTAGGGATGACGCCACTG-AGA-TTATTATCGTACAAAA--
66 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCA--GAAAACATATT-TTG-A-AAAAGG
*** *
57251834 A-AAGA-TGAACCAAGTTGC
126 ATAAGAGT-AGTTAAGTTGG
* * *
57251852 TTAAGTTTCCTATCGAAGTAGGGATTTGTCCACAGAATGTGTTATTGGACAGATCCAATTCACTG
1 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
* * *
57251917 AGAGATTTAAGCATCCCTACCTCTTTAGGTACCAATCCAGAAAACATATTTTGAGAAAGGGTAAG
66 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAGAAAACATATTTTGAAAAAGGATAAG
*
57251982 AGTAGTTAAGCTGG
131 AGTAGTTAAGTTGG
57251996 TCA
1 TCA
57251999 TGCTCCCTAT
Statistics
Matches: 238, Mismatches: 41, Indels: 24
0.79 0.14 0.08
Matches are distributed among these distances:
141 3 0.01
142 2 0.01
143 5 0.02
144 220 0.92
145 3 0.01
146 1 0.00
147 4 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (144 bp):
TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAGAAAACATATTTTGAAAAAGGATAAG
AGTAGTTAAGTTGG
Found at i:57253111 original size:111 final size:111
Alignment explanation
Indices: 57252917--57253139 Score: 383
Period size: 111 Copynumber: 2.0 Consensus size: 111
57252907 AATTCTAAGA
*
57252917 TCATTTGAATTTATCATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
1 TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
* *
57252982 TCATCAAATCTTGATTGTAGCTAAAATGTCACTATATTTAGTAAAT
66 TCATCAAATATTGATTGTAGCTAAAATGTCACTATATTCAGTAAAT
*
57253028 TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTATCA
1 TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
* * *
57253093 TCATTAAATATTGATTGTAGTTAAAATGTCACTTTATTCAGTAAAT
66 TCATCAAATATTGATTGTAGCTAAAATGTCACTATATTCAGTAAAT
57253139 T
1 T
57253140 TAATTTTTTT
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
111 105 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.46
Consensus pattern (111 bp):
TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
TCATCAAATATTGATTGTAGCTAAAATGTCACTATATTCAGTAAAT
Found at i:57262794 original size:37 final size:37
Alignment explanation
Indices: 57262753--57262827 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
57262743 TGAGAAAAAA
57262753 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
1 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
57262790 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
1 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
57262827 G
1 G
57262828 ACACACGCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (37 bp):
GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
Found at i:57273830 original size:14 final size:14
Alignment explanation
Indices: 57273785--57273833 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
57273775 ACACGACAAC
57273785 ATTAAATATTAAAA
1 ATTAAATATTAAAA
*
57273799 ATCATAAAATATAAAAA
1 AT--T-AAATATTAAAA
*
57273816 ATTAAATATTTAAA
1 ATTAAATATTAAAA
57273830 ATTA
1 ATTA
57273834 TTAAAATGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 15 0.52
15 1 0.03
16 1 0.03
17 12 0.41
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
ATTAAATATTAAAA
Found at i:57273836 original size:17 final size:17
Alignment explanation
Indices: 57273785--57273838 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
57273775 ACACGACAAC
* *
57273785 ATTAAATATTAAAAATC
1 ATTAAATATTTAAAATA
*
57273802 A-TAAA-ATATAAAA-A
1 ATTAAATATTTAAAATA
*
57273816 ATTAAATATTTAAAATT
1 ATTAAATATTTAAAATA
57273833 ATTAAA
1 ATTAAA
57273839 ATGGACACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
14 1 0.03
15 10 0.34
16 11 0.38
17 7 0.24
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTAAATATTTAAAATA
Found at i:57273908 original size:26 final size:28
Alignment explanation
Indices: 57273852--57273910 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 28
57273842 GACACAAATT
* * *
57273852 TAAAAATTATAAAAACTTATACATATTA
1 TAAAAATTATAAAAACCTATACAAATCA
57273880 TAAAAA-TATAAAAACCTA-ACAAATCA
1 TAAAAATTATAAAAACCTATACAAATCA
57273906 TAAAA
1 TAAAA
57273911 GTTTTATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 11 0.39
27 11 0.39
28 6 0.21
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (28 bp):
TAAAAATTATAAAAACCTATACAAATCA
Found at i:57274002 original size:10 final size:9
Alignment explanation
Indices: 57273847--57274113 Score: 126
Period size: 9 Copynumber: 29.3 Consensus size: 9
57273837 AAATGGACAC
57273847 AAATT-TAA
1 AAATTATAA
57273855 AAATTATAA
1 AAATTATAA
*
57273864 AAACTTATAC
1 AAA-TTATAA
*
57273874 ATATTATAA
1 AAATTATAA
57273883 AAA-TATAA
1 AAATTATAA
* *
57273891 AAACCTA-AC
1 AAA-TTATAA
*
57273900 AAATCATAA
1 AAATTATAA
* *
57273909 AAGTTTTATA
1 AAATTATA-A
57273919 AAATTAATAAA
1 AAATT-AT-AA
*
57273930 AAATATTTACA
1 AAAT-TATA-A
** *
57273941 ATTTTATGA
1 AAATTATAA
*
57273950 AAATCAT-A
1 AAATTATAA
57273958 AAA-TATTAA
1 AAATTA-TAA
*
57273967 AAA-TATAT
1 AAATTATAA
57273975 AAATTAGTAA
1 AAATTA-TAA
*
57273985 AAAATATAA
1 AAATTATAA
57273994 AAACTTATAA
1 AAA-TTATAA
*
57274004 ATATTATAA
1 AAATTATAA
57274013 AAA-TATAA
1 AAATTATAA
*
57274021 TAATTA-AA
1 AAATTATAA
**
57274029 ATTTTATAA
1 AAATTATAA
*
57274038 AAACATATAA
1 AAA-TTATAA
57274048 AAATTCATAA
1 AAATT-ATAA
57274058 ATAA-TATAA
1 A-AATTATAA
57274067 ATAA-TATAA
1 A-AATTATAA
*
57274076 AAATTCTAA
1 AAATTATAA
*
57274085 TAAATTGTAA
1 -AAATTATAA
57274095 AAA--ATAA
1 AAATTATAA
57274102 AAATTATAA
1 AAATTATAA
57274111 AAA
1 AAA
57274114 CTTGTCGAAA
Statistics
Matches: 196, Mismatches: 39, Indels: 47
0.70 0.14 0.17
Matches are distributed among these distances:
7 7 0.04
8 38 0.19
9 84 0.43
10 53 0.27
11 12 0.06
12 2 0.01
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (9 bp):
AAATTATAA
Found at i:57274019 original size:44 final size:45
Alignment explanation
Indices: 57273949--57274070 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 45
57273939 CAATTTTATG
* *
57273949 AAAATCATA-AAATATTA-AAAATATATAAATTAGTAAAA-AATAT
1 AAAAACATATAAATATTATAAAA-ATATAAATAAGTAAAATAATAT
* * **
57273992 AAAAACTTATAAATATTATAAAAATAT-AATAATTAAAATTTTAT
1 AAAAACATATAAATATTATAAAAATATAAATAAGTAAAATAATAT
*
57274036 AAAAACATATAAAAATTCATAAATAATATAAATAA
1 AAAAACATATAAATATT-ATAAA-AATATAAATAA
57274071 TATAAAAATT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
43 16 0.25
44 30 0.46
45 9 0.14
46 5 0.08
47 5 0.08
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (45 bp):
AAAAACATATAAATATTATAAAAATATAAATAAGTAAAATAATAT
Found at i:57275409 original size:20 final size:22
Alignment explanation
Indices: 57275381--57275427 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
57275371 TTTTAAGTTA
*
57275381 AAAATTAAAAGAAT-AA-AAAT
1 AAAACTAAAAGAATAAATAAAT
*
57275401 AAAACTAAATGAATAAATAAAT
1 AAAACTAAAAGAATAAATAAAT
57275423 AAAAC
1 AAAAC
57275428 AAACACCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 2 0.09
22 9 0.39
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (22 bp):
AAAACTAAAAGAATAAATAAAT
Found at i:57276269 original size:85 final size:85
Alignment explanation
Indices: 57276157--57276455 Score: 296
Period size: 85 Copynumber: 3.5 Consensus size: 85
57276147 GACGAGATTG
* ** * *
57276157 GTGGTTTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTACTGCA
1 GTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTACTGTA
57276222 ACTTCAGAGAGATAAGATCT
66 ACTTCAGAGAGATAAGATCT
* * * * * * * * * *
57276242 GTGGTTTTAATCCATTCCATTGCAACTTCAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCATT
1 GTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGACTAG---ATGCGATCTGCTCTACT
*
57276307 GTAACTTCAGGGAGATAAGAT-T
63 GTAACTTCAGAGAGATAAGATCT
* ** * * *
57276329 G-GTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTTTACTG
1 GTGGTT-TT-AATCCACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTACTG
* *
57276393 TAGCTTCAGAGGGATAAGATCT
64 TAACTTCAGAGAGATAAGATCT
* * *
57276415 GTGGTTTTAATCCACTCTACTACAACTTCAGAGAGATAAGA
1 GTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGA
57276456 TTGGTTTCTT
Statistics
Matches: 165, Mismatches: 42, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
85 91 0.55
86 7 0.04
87 7 0.04
88 60 0.36
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (85 bp):
GTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTACTGTA
ACTTCAGAGAGATAAGATCT
Found at i:57276270 original size:44 final size:44
Alignment explanation
Indices: 57276218--57276803 Score: 204
Period size: 44 Copynumber: 13.5 Consensus size: 44
57276208 TCTGCTCTAC
* *
57276218 TGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCCATTCCAT
1 TGCAACTTCAGGGAGATAAGAT-TG-GGTTCTTCAATCCACTCCAT
* * **
57276262 TGCAACTTCAGGGAGATAGGATTGGTTTCTTCAATCTGCTCCAT
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * ** * *
57276306 TGTAACTTCAGGGAGATAAGATTGGTTTCTTCTGTCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * * * * * ** *
57276350 TGCAACTTCAGGGAGATAAGACTAGATGC--GATAT--GCTTTAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCA-ATCCACTCCAT
* * * *
57276391 TGTAGCTTCAGAGG-GATAAGATCTGTGGTT-TT-AATCCACTCTAC
1 TGCAACTTCAG-GGAGATAAGAT-TG-GGTTCTTCAATCCACTCCAT
* * * ** * *
57276435 TACAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * * * * * ** * *
57276479 TGTAACTTTAGGGAGATAAGACT-GGAT-GT-GATCTGCTCTAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * * *
57276520 TCCAACTTTAGAGAGATAAGATCTTGTGGTT-TT-AAT-CAGCTCCAC
1 TGCAACTTCAGGGAGATAAGA--TTG-GGTTCTTCAATCCA-CTCCAT
* * * * *** *
57276565 TGCAACTTCAGTGAGATATGATTTGTTTCTTCAATATGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * * ** * *
57276609 TGCAACTTTAGGGAGATAAGGTTGGTTTCTTCTGTCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * * * ** * *
57276653 TGCAACTTCAGGGAGATAAGACT-GG--ATGCGATCTGCTCTAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
* * *
57276694 TGCAACTTCAGAGAGATAAGATCTTGTGGTT-TT-AATCCGCTCCAC
1 TGCAACTTCAGGGAGATAAGA--TTG-GGTTCTTCAATCCACTCCAT
* * * *** *
57276739 TGTAACTTCAGGGAGATAGGATTGGTTTCTTCAATCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
57276783 TGCAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGA
57276804 CTTTATGATT
Statistics
Matches: 410, Mismatches: 103, Indels: 58
0.72 0.18 0.10
Matches are distributed among these distances:
41 76 0.19
42 18 0.04
43 27 0.07
44 231 0.56
45 57 0.14
46 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTGGGTTCTTCAATCCACTCCAT
Found at i:57276400 original size:129 final size:128
Alignment explanation
Indices: 57276264--57276628 Score: 412
Period size: 129 Copynumber: 2.8 Consensus size: 128
57276254 CATTCCATTG
* * * * * *
57276264 CAACTTCAGGGAGATAGGATTG-GTTTCTTCAATCTGCTCCATTGTAACTTCAGGGAGATAAGAT
1 CAACTTCAGGGAGATAAGATTGTGGTT-TT-AATCAGCTCCACTGCAACTTCAGAGAGATAAGAT
* * *
57276328 TGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTTTACTG
64 TGGTTTCTTCTGTCTACTCCACTGCAACTTTAGGGAGATAAGACTAGATGCGATATGCTCTACTC
* * * *
57276393 TAGCTTCAGAGG-GATAAGATCTGTGGTTTTAATCCA-CTCTACTACAACTTCAGAGAGATAAGA
1 CAACTTCAG-GGAGATAAGAT-TGTGGTTTTAAT-CAGCTCCACTGCAACTTCAGAGAGATAAGA
* * * *
57276456 TTGGTTTCTTCTGTCTACTCCACTGTAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACT
63 TTGGTTTCTTCTGTCTACTCCACTGCAACTTTAGGGAGATAAGACTAGATGCGATATGCTCTACT
57276521 C
128 C
* * * *
57276522 CAACTTTAGAGAGATAAGATCTTGTGGTTTTAATCAGCTCCACTGCAACTTCAGTGAGATATGAT
1 CAACTTCAGGGAGATAAGA--TTGTGGTTTTAATCAGCTCCACTGCAACTTCAGAGAGATAAGAT
* ** * *
57276587 TTGTTTCTTCAATATGCTCCACTGCAACTTTAGGGAGATAAG
64 TGGTTTCTTCTGTCTACTCCACTGCAACTTTAGGGAGATAAG
57276629 GTTGGTTTCT
Statistics
Matches: 197, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
128 1 0.01
129 113 0.57
130 79 0.40
131 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (128 bp):
CAACTTCAGGGAGATAAGATTGTGGTTTTAATCAGCTCCACTGCAACTTCAGAGAGATAAGATTG
GTTTCTTCTGTCTACTCCACTGCAACTTTAGGGAGATAAGACTAGATGCGATATGCTCTACTC
Found at i:57276402 original size:173 final size:173
Alignment explanation
Indices: 57276166--57276714 Score: 510
Period size: 173 Copynumber: 3.2 Consensus size: 173
57276156 GGTGGTTTTA
* * *
57276166 GTCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTACTGCAACTTCAGAG
1 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTACTGCAACTTCAGAG
* * * * *
57276231 AGATAAGATCTGTGGTTTTAATCCATTCCATTGCAACTTCAGGGAGATAGGATTGGTTTCTTCAA
66 AGATAAGATCTGTGGTTTTAATCCACTCCACTACAACTTCAGAGAGATAAGATTGGTTTCTTCAA
* *
57276296 TCTGCTCCATTGTAACTTCAGGGAGATAAGATTGGTTTCTTCT
131 TCTACTCCACTGTAACTTCAGGGAGATAAGATTGGTTTCTTCT
* * *
57276339 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTTTACTGTAGCTTCAGAG
1 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTACTGCAACTTCAGAG
* * **
57276404 GGATAAGATCTGTGGTTTTAATCCACTCTACTACAACTTCAGAGAGATAAGATTGGTTTCTTCTG
66 AGATAAGATCTGTGGTTTTAATCCACTCCACTACAACTTCAGAGAGATAAGATTGGTTTCTTCAA
* * * **
57276469 TCTACTCCACTGTAACTTTAGGGAGATAAGACTGGATGTGATCT
131 TCTACTCCACTGTAACTTCAGGGAGATAAGATTGG-TTTCTTCT
* * * * * *
57276513 G-CT-CT--ACTCCAACTTTAGAGAGATAAGATCTTG-TG-GTTTTAATCAGCTCCACTGCAACT
1 GTCTACTCCACTGCAACTTCAGGGAGATAAGA-CTAGATGCG--AT-AT--GCTCTACTGCAACT
* * * *** * * * *
57276572 TCAGTGAGATATGAT-T-TGTTTCTTCAATATGCTCCACTGCAACTTTAGGGAGATAAGGTTGGT
60 TCAGAGAGATAAGATCTGTGGTT-TT-AATCCACTCCACTACAACTTCAGAGAGATAAGATTGGT
** * * * * *
57276635 TTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCT
123 TTCTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGATTGGTTTC-TTCT
*
57276687 G-CT-CT--ACTGCAACTTCAGAGAGATAAGA
1 GTCTACTCCACTGCAACTTCAGGGAGATAAGA
57276715 TCTTGTGGTT
Statistics
Matches: 315, Mismatches: 51, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
169 1 0.00
170 22 0.07
171 4 0.01
172 8 0.03
173 151 0.48
174 129 0.41
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (173 bp):
GTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTACTGCAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCACTCCACTACAACTTCAGAGAGATAAGATTGGTTTCTTCAA
TCTACTCCACTGTAACTTCAGGGAGATAAGATTGGTTTCTTCT
Found at i:57276641 original size:174 final size:174
Alignment explanation
Indices: 57276437--57276803 Score: 599
Period size: 174 Copynumber: 2.1 Consensus size: 174
57276427 CACTCTACTA
* * *
57276437 CAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTACTCCACTGTAACTTTAGGGAGATAAGACT
1 CAACTTCAGGGAGATAAGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACT
* *
57276502 GGATGTGATCTGCTCTACTCCAACTTTAGAGAGATAAGATCTTGTGGTTTTAATCAGCTCCACTG
66 GGATGCGATCTGCTCTACTCCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCAGCTCCACTG
* * *
57276567 CAACTTCAGTGAGATATGATTTGTTTCTTCAATATGCTCCACTG
131 CAACTTCAGGGAGATAGGATTGGTTTCTTCAATATGCTCCACTG
* *
57276611 CAACTTTAGGGAGATAAGGTTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACT
1 CAACTTCAGGGAGATAAGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACT
* *
57276676 GGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTG
66 GGATGCGATCTGCTCTACTCCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCAGCTCCACTG
* * *
57276741 TAACTTCAGGGAGATAGGATTGGTTTCTTCAATCTGTTCCACTG
131 CAACTTCAGGGAGATAGGATTGGTTTCTTCAATATGCTCCACTG
57276785 CAACTTCAGGGAGATAAGA
1 CAACTTCAGGGAGATAAGA
57276804 CTTTATGATT
Statistics
Matches: 176, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
174 176 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (174 bp):
CAACTTCAGGGAGATAAGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACT
GGATGCGATCTGCTCTACTCCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCAGCTCCACTG
CAACTTCAGGGAGATAGGATTGGTTTCTTCAATATGCTCCACTG
Found at i:57276736 original size:130 final size:129
Alignment explanation
Indices: 57276558--57276805 Score: 340
Period size: 130 Copynumber: 1.9 Consensus size: 129
57276548 GTTTTAATCA
* * * *
57276558 GCTCCACTGCAACTTCAGTGAGATATGATTTGTTTCTTCAATATGCTCCACTGCAACTTTAGGGA
1 GCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTCTTCAATACGCTCCACTGCAACTTCAGGGA
**
57276623 GATAAGG-TTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCT
66 GAT-AGGATTGGTTTCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCT
* * *
57276687 GCTCTACTGCAACTTCAGAGAGATAAGATCTTGTGGTT-TT-AATCCGCTCCACTGTAACTTCAG
1 GCTCCACTGCAACTTCAGAGAGATAAGAT-TTGT--TTCTTCAATACGCTCCACTGCAACTTCAG
**
57276750 GGAGATAGGATTGGTTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGACT
63 GGAGATAGGATTGGTTTCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACT
57276806 TTATGATTTC
Statistics
Matches: 104, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
129 29 0.28
130 71 0.68
131 2 0.02
132 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (129 bp):
GCTCCACTGCAACTTCAGAGAGATAAGATTTGTTTCTTCAATACGCTCCACTGCAACTTCAGGGA
GATAGGATTGGTTTCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCT
Found at i:57287681 original size:31 final size:31
Alignment explanation
Indices: 57287645--57287707 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
57287635 AAGTTTTTGA
57287645 CCAAAAGACAAAAATTAATCAATTTACGGCT
1 CCAAAAGACAAAAATTAATCAATTTACGGCT
57287676 CCAAAAGACAAAAATTAATCAATTTACGGCT
1 CCAAAAGACAAAAATTAATCAATTTACGGCT
57287707 C
1 C
57287708 GGCTCTCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.22
Consensus pattern (31 bp):
CCAAAAGACAAAAATTAATCAATTTACGGCT
Found at i:57288934 original size:17 final size:17
Alignment explanation
Indices: 57288900--57288947 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
57288890 AAGATATGGG
*
57288900 AAATAAATATGT-TACA
1 AAATATATATGTATACA
*
57288916 AAATGTATATGTATACA
1 AAATATATATGTATACA
*
57288933 AAATATAAATGTATA
1 AAATATATATGTATA
57288948 TGCATATACA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.33
Consensus pattern (17 bp):
AAATATATATGTATACA
Found at i:57289094 original size:3 final size:3
Alignment explanation
Indices: 57289086--57289133 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
57289076 CGTACGTGGA
* * *
57289086 AAT AAT AAT TAT AAT ACT AAT AAT AAT AGT AAAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
57289132 AA
1 AA
57289134 ATTTTCTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 36 0.95
4 2 0.05
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:57289781 original size:20 final size:22
Alignment explanation
Indices: 57289753--57289799 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
57289743 TTTTAAGTTA
*
57289753 AAAATTAAAAGAAT-AA-AAAT
1 AAAACTAAAAGAATAAATAAAT
*
57289773 AAAACTAAATGAATAAATAAAT
1 AAAACTAAAAGAATAAATAAAT
57289795 AAAAC
1 AAAAC
57289800 AAACACCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 2 0.09
22 9 0.39
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (22 bp):
AAAACTAAAAGAATAAATAAAT
Found at i:57290372 original size:9 final size:9
Alignment explanation
Indices: 57290333--57290622 Score: 148
Period size: 9 Copynumber: 31.4 Consensus size: 9
57290323 AACCATAATT
*
57290333 AAAATTATT
1 AAAATTATA
*
57290342 AAAATGGATA
1 AAAAT-TATA
*
57290352 CAAATT-TA
1 AAAATTATA
57290360 AAAATTATA
1 AAAATTATA
57290369 AAAACTTATA
1 AAAA-TTATA
* *
57290379 AATATTACA
1 AAAATTATA
57290388 AAAA-TATAA
1 AAAATTAT-A
*
57290397 AAAATCAT-
1 AAAATTATA
*
57290405 AAAATCATA
1 AAAATTATA
* *
57290414 AAATTTTTA
1 AAAATTATA
57290423 TAAAATTAATAA
1 -AAAATT-AT-A
*
57290435 AAAATATTTA
1 AAAAT-TATA
** *
57290445 CAATTTTATG
1 -AAAATTATA
*
57290455 AAAATCAT-
1 AAAATTATA
57290463 AAAA-TATTA
1 AAAATTA-TA
57290472 AAAA-TATA
1 AAAATTATA
*
57290480 TAAATTAGTA
1 AAAATTA-TA
*
57290490 AAAAATATA
1 AAAATTATA
57290499 AAAACTTATA
1 AAAA-TTATA
*
57290509 AATATTATA
1 AAAATTATA
57290518 AAAA-TATA
1 AAAATTATA
*
57290526 ATAATTA-A
1 AAAATTATA
**
57290534 AATTTTATA
1 AAAATTATA
*
57290543 AAAACATATA
1 AAAA-TTATA
57290553 AAAATTCATAA
1 AAAATT-AT-A
57290564 AAAATTATA
1 AAAATTATA
57290573 AATAA-TATA
1 AA-AATTATA
* *
57290582 AAATTTCTA
1 AAAATTATA
57290591 ATAAATTATA
1 A-AAATTATA
**
57290601 AAAAAAATA
1 AAAATTATA
57290610 AAAATTATA
1 AAAATTATA
57290619 AAAA
1 AAAA
57290623 CTCATTTAAA
Statistics
Matches: 211, Mismatches: 46, Indels: 48
0.69 0.15 0.16
Matches are distributed among these distances:
7 1 0.00
8 40 0.19
9 92 0.44
10 59 0.28
11 17 0.08
12 2 0.01
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:57290484 original size:17 final size:17
Alignment explanation
Indices: 57290455--57290519 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 17
57290445 CAATTTTATG
57290455 AAAATCATA-AAATATTA
1 AAAAT-ATATAAATATTA
*
57290472 AAAATATATAAATTAGTA
1 AAAATATATAAA-TATTA
*
57290490 AAAA-ATATAAAAACTTA
1 AAAATATATAAATA-TTA
*
57290507 TAAATATTATAAA
1 AAAATA-TATAAA
57290520 AATATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 4 0.10
17 20 0.51
18 9 0.23
19 6 0.15
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAATATATAAATATTA
Found at i:57290510 original size:19 final size:18
Alignment explanation
Indices: 57290353--57290622 Score: 144
Period size: 19 Copynumber: 14.7 Consensus size: 18
57290343 AAATGGATAC
*
57290353 AAATT-TAAAAATTATAA
1 AAATTATAAAAAATATAA
* * *
57290370 AAACTTATAAATATTACAA
1 AAA-TTATAAAAAATATAA
57290389 AAA-TATAAAAAATCAT-A
1 AAATTATAAAAAAT-ATAA
* ** *
57290406 AAATCATAAAATTTTTATA
1 AAATTATAAAAAATATA-A
*
57290425 AAATTAATAAAAAATATTTA
1 AAATT-ATAAAAAATA-TAA
* * *
57290445 CAATTTTATGAAAATCAT-A
1 AAATTATA-AAAAAT-ATAA
* *
57290464 AAA-TATTAAAAATATAT
1 AAATTATAAAAAATATAA
57290481 AAATTAGTAAAAAATATAA
1 AAATTA-TAAAAAATATAA
* *
57290500 AAACTTATAAATATTATAA
1 AAA-TTATAAAAAATATAA
*
57290519 AAA-TAT-AATAAT-TAA
1 AAATTATAAAAAATATAA
*
57290534 AATTTTATAAAAACATATAA
1 AA-ATTATAAAAA-ATATAA
57290554 AAATTCATAAAAAATTATAA
1 AAATT-ATAAAAAA-TATAA
** *
57290574 ATAA-TATAAAATTTCTAA
1 A-AATTATAAAAAATATAA
*
57290592 TAAATTATAAAAAAAATAA
1 -AAATTATAAAAAATATAA
57290611 AAATTATAAAAA
1 AAATTATAAAAA
57290623 CTCATTTAAA
Statistics
Matches: 192, Mismatches: 37, Indels: 47
0.70 0.13 0.17
Matches are distributed among these distances:
15 5 0.03
16 7 0.04
17 30 0.16
18 35 0.18
19 71 0.37
20 40 0.21
21 4 0.02
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (18 bp):
AAATTATAAAAAATATAA
Found at i:57290524 original size:11 final size:11
Alignment explanation
Indices: 57290508--57290580 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 11
57290498 AAAAACTTAT
57290508 AAATATTATAA
1 AAATATTATAA
*
57290519 AAATATAATAATTA
1 AAATAT--T-ATAA
*
57290533 AAATTTTATAA
1 AAATATTATAA
*
57290544 AAACA-TATAA
1 AAATATTATAA
*
57290554 AAAT-TCATAA
1 AAATATTATAA
57290564 AAA-ATTATAA
1 AAATATTATAA
57290574 ATAATAT
1 A-AATAT
57290581 AAAATTTCTA
Statistics
Matches: 47, Mismatches: 8, Indels: 13
0.69 0.12 0.19
Matches are distributed among these distances:
10 21 0.45
11 14 0.30
12 3 0.06
13 1 0.02
14 8 0.17
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATATTATAA
Found at i:57290525 original size:44 final size:45
Alignment explanation
Indices: 57290455--57290577 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 45
57290445 CAATTTTATG
* *
57290455 AAAATCATA-AAATATTA-AAAATATATAAATTAGTAAAA-AATAT
1 AAAAACATATAAATATTATAAAA-ATATAAATAAGTAAAATAATAT
* * **
57290498 AAAAACTTATAAATATTATAAAAATAT-AATAATTAAAATTTTAT
1 AAAAACATATAAATATTATAAAAATATAAATAAGTAAAATAATAT
*
57290542 AAAAACATATAAAAATTCATAAAAAATTATAAATAA
1 AAAAACATATAAATATT-AT-AAAAA-TATAAATAA
57290578 TATAAAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
43 16 0.25
44 30 0.46
45 6 0.09
46 5 0.08
47 3 0.05
48 5 0.08
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (45 bp):
AAAAACATATAAATATTATAAAAATATAAATAAGTAAAATAATAT
Found at i:57290596 original size:28 final size:29
Alignment explanation
Indices: 57290481--57290622 Score: 129
Period size: 28 Copynumber: 5.1 Consensus size: 29
57290471 AAAAATATAT
57290481 AAATTAGTAAAAAATATAAAAACTT-AT-AA
1 AAATTA-TAAAAAATATAAAAA-TTCATAAA
* *
57290510 ATATTAT-AAAAATATAATAA-T--TAAA
1 AAATTATAAAAAATATAAAAATTCATAAA
**
57290535 ATTTTATAAAAACATATAAAAATTCATAAA
1 AAATTATAAAAA-ATATAAAAATTCATAAA
* * *
57290565 AAATTATAAATAATATAAAATTTC-TAAT
1 AAATTATAAAAAATATAAAAATTCATAAA
*
57290593 AAATTATAAAAAAAATAAAAATT-ATAAA
1 AAATTATAAAAAATATAAAAATTCATAAA
57290621 AA
1 AA
57290623 CTCATTTAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
24 1 0.01
25 9 0.10
26 4 0.04
27 20 0.22
28 30 0.32
29 16 0.17
30 13 0.14
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.32
Consensus pattern (29 bp):
AAATTATAAAAAATATAAAAATTCATAAA
Found at i:57291196 original size:13 final size:14
Alignment explanation
Indices: 57291172--57291200 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
57291162 TTGCCAATTT
57291172 TGATCTAACCAATC
1 TGATCTAACCAATC
57291186 TGATC-AACCAATC
1 TGATCTAACCAATC
57291199 TG
1 TG
57291201 GTCCAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (14 bp):
TGATCTAACCAATC
Found at i:57291405 original size:25 final size:26
Alignment explanation
Indices: 57291377--57291432 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
57291367 TTTATTAGAG
57291377 TTTATTAAGTTCTTAT-TT-TATAATA
1 TTTATTAAGTTCTTATCTTATATAA-A
* *
57291402 TTTA-TAATTTTTTATCTTATATAAA
1 TTTATTAAGTTCTTATCTTATATAAA
57291427 TTTATT
1 TTTATT
57291433 TATATTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 9 0.35
25 11 0.42
26 6 0.23
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (26 bp):
TTTATTAAGTTCTTATCTTATATAAA
Found at i:57293553 original size:114 final size:114
Alignment explanation
Indices: 57293350--57293980 Score: 733
Period size: 114 Copynumber: 5.6 Consensus size: 114
57293340 GAAATTATTC
* * * * * * * * *
57293350 GTGGCGCTTAT-CTAAAATTGCCGCTAAAGCATAGTATTAGCGGCGTGTCGTCAAATGTGGCGTA
1 GTGGCGCTTATGGTAAAA-CGCCGCTAAAACATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
* *
57293414 ATATATCATAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
65 ATATATCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
* * * *
57293464 GTGGCGCTTTTAGG-AAAACGCCGTTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGTGCCGCA
1 GTGGCGCTTAT-GGTAAAACGCCGCTAAAACATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
* *
57293528 ATATATCTTAACTAAAACGCTGAGTTTGGTCTTGAGGTATACTAGCATTA
65 ATATATCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
* * * *
57293578 GTGGCGCTGAT-ATAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCT
1 GTGGCGCTTATGGT-AAAACGCCGCTAAAACATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
*
57293642 ATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
65 ATATATCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
* * * *
57293692 GTGGCGCTTATGGTAAAACGCCGCTAAAACATATTATTAGCGGCG-CTTGTTGTAAAGCGCCGCA
1 GTGGCGCTTATGGTAAAACGCCGCTAAAACATAGTATTAGCGGCGAGTCG-TGAAAAGCGCCGCA
* * *
57293756 A-A-ATATTAACAAAAACGCA-ATGCTTTGGTCTTGATGTATACTAGCAGTA
65 ATATATCTTAACAAAAACGCAGA-G-TTTGGTCTTGAGGTATACTAGCATTA
* ** * *
57293805 GTGGCGCTTATGGTAAAACGCCGCTAAAACATATTATTAGCGGCGCTTGGTGTAAAGCGCCGCAA
1 GTGGCGCTTATGGTAAAACGCCGCTAAAACATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
* * *
57293870 -A-ATATTAACAAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCAATT-
66 TATATCTTAACAAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGC-ATTA
* * * * **
57293918 GTGGCGCTTATGGTAAAACGCCGCTAAAACATATTAGTAGCGGCGCGTTGTGTGAAGCGCCGC
1 GTGGCGCTTATGGTAAAACGCCGCTAAAACATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGC
57293981 GAAGTTATTA
Statistics
Matches: 466, Mismatches: 40, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
111 1 0.00
112 16 0.03
113 188 0.40
114 256 0.55
115 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (114 bp):
GTGGCGCTTATGGTAAAACGCCGCTAAAACATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
TATATCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
Found at i:57294007 original size:17 final size:17
Alignment explanation
Indices: 57293985--57294076 Score: 152
Period size: 17 Copynumber: 5.5 Consensus size: 17
57293975 CGCCGCGAAG
57293985 TTATTATATAATGTAGT
1 TTATTATATAATGTAGT
*
57294002 TTATTATAT-ATTTAGT
1 TTATTATATAATGTAGT
57294018 TTATTATAT-ATGTAGT
1 TTATTATATAATGTAGT
*
57294034 TTATTATATAATGTAGG
1 TTATTATATAATGTAGT
57294051 TTATTATATAATGTAGT
1 TTATTATATAATGTAGT
57294068 TTATTATAT
1 TTATTATAT
57294077 TATATAATGT
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
16 30 0.43
17 40 0.57
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (17 bp):
TTATTATATAATGTAGT
Found at i:57294094 original size:17 final size:17
Alignment explanation
Indices: 57293985--57294094 Score: 52
Period size: 17 Copynumber: 6.3 Consensus size: 17
57293975 CGCCGCGAAG
*
57293985 TTATTATATAATGTAGT-
1 TTATTATATAATGT-TTA
57294002 TTATTATAT-A--TTTA
1 TTATTATATAATGTTTA
*
57294016 GTTTATTATAT-ATGTAGT-
1 --TTATTATATAATGT-TTA
***
57294034 TTATTATATAATGTAGG
1 TTATTATATAATGTTTA
57294051 TTATTATATAATGTAGTTTA
1 TTATTATATAA--T-GTTTA
57294071 TTATATTATATAATGTTTA
1 -T-TATTATATAATGTTTA
57294090 TTATT
1 TTATT
57294095 TTTGGATTAC
Statistics
Matches: 73, Mismatches: 7, Indels: 26
0.69 0.07 0.25
Matches are distributed among these distances:
13 1 0.01
14 1 0.01
16 20 0.27
17 28 0.38
18 2 0.03
19 7 0.10
20 3 0.04
21 1 0.01
22 10 0.14
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (17 bp):
TTATTATATAATGTTTA
Found at i:57295712 original size:20 final size:20
Alignment explanation
Indices: 57295674--57295713 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57295664 GCTTCATCAC
*
57295674 CATCACCGTCTCATCTACTG
1 CATCACCGTCCCATCTACTG
57295694 CATCACCGTCACCAT-TACTG
1 CATCACCGTC-CCATCTACTG
57295714 TCACCATCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.23, C:0.40, G:0.10, T:0.28
Consensus pattern (20 bp):
CATCACCGTCCCATCTACTG
Found at i:57297201 original size:9 final size:9
Alignment explanation
Indices: 57297169--57297517 Score: 247
Period size: 9 Copynumber: 40.2 Consensus size: 9
57297159 TATCTTAGAC
57297169 AACTTACAT
1 AACTTACAT
57297178 AA--TACAT
1 AACTTACAT
* *
57297185 AGCATACAT
1 AACTTACAT
57297194 AACTTACAT
1 AACTTACAT
*
57297203 AA--TACAA
1 AACTTACAT
57297210 AACTTACAT
1 AACTTACAT
*
57297219 AACTTAAAT
1 AACTTACAT
* *
57297228 ATCTTACAC
1 AACTTACAT
57297237 AACTTACAT
1 AACTTACAT
*
57297246 AACCTACAT
1 AACTTACAT
57297255 AA--TACATTT
1 AACTTACA--T
57297264 AACTTACAT
1 AACTTACAT
*
57297273 AACTTATAT
1 AACTTACAT
*
57297282 AA--TACAA
1 AACTTACAT
57297289 AACTTACAT
1 AACTTACAT
*
57297298 AACTTAAAT
1 AACTTACAT
* *
57297307 ATCTTACAC
1 AACTTACAT
*
57297316 AACTTACAC
1 AACTTACAT
*
57297325 AACCTACAT
1 AACTTACAT
57297334 AA--TACATTT
1 AACTTACA--T
57297343 AACTTACAT
1 AACTTACAT
57297352 AACTTACAT
1 AACTTACAT
*
57297361 AATACATA-AT
1 -A-ACTTACAT
57297371 AACTTAC--
1 AACTTACAT
57297378 AACTTACAT
1 AACTTACAT
*
57297387 AATACATA-AT
1 -A-ACTTACAT
57297397 AACTTAC--
1 AACTTACAT
57297404 AACTTACAT
1 AACTTACAT
*
57297413 AACATACAT
1 AACTTACAT
* **
57297422 TACTTTGAT
1 AACTTACAT
57297431 AACTTACAT
1 AACTTACAT
57297440 AACTTACAT
1 AACTTACAT
*
57297449 AA--TACAC
1 AACTTACAT
57297456 AACTTACAT
1 AACTTACAT
* *
57297465 AGCTTACTT
1 AACTTACAT
57297474 AA--TACAT
1 AACTTACAT
57297481 AACTTACAT
1 AACTTACAT
57297490 AACTT--AT
1 AACTTACAT
*
57297497 ACACGTACAT
1 A-ACTTACAT
57297507 AACTTACAT
1 AACTTACAT
57297516 AA
1 AA
57297518 TTTAGTTAAT
Statistics
Matches: 266, Mismatches: 43, Indels: 62
0.72 0.12 0.17
Matches are distributed among these distances:
7 54 0.20
8 11 0.04
9 176 0.66
10 9 0.03
11 16 0.06
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:57297254 original size:52 final size:51
Alignment explanation
Indices: 57297169--57297517 Score: 204
Period size: 52 Copynumber: 6.5 Consensus size: 51
57297159 TATCTTAGAC
* * * * *
57297169 AACTTACATAATACATAGCATACATAACTTACATAATACA-AAACTTACAT
1 AACTTATATAATACAAAACTTACATAACCTACATAATACATAAACTTACAT
** * *
57297219 AACTTAAATATCTTACACAACTTACATAACCTACATAATACATTTAACTTACAT
1 AACTT--ATATAATACAAAACTTACATAACCTACATAATACA-TAAACTTACAT
* * * * *
57297273 AACTTATATAATACAAAACTTACATAACTTAAATATCTTACA-CAACTTACAC
1 AACTTATATAATACAAAACTTACATAACCTACATA--ATACATAAACTTACAT
* * * *
57297325 AACCTACATAATACATTTAACTTACATAACTTACATAATACATAATAACTTAC--
1 AACTTATATAATACA--AAACTTACATAACCTACATAATACAT-A-AACTTACAT
* * * *
57297378 AACTTACATAATACATAATAACTTACAACTTACATAACATACATTACTTTGATAACTTACAT
1 AACTTATATAATAC--AA-AACTTAC-A-TAACCT-ACATA-A-TAC-AT-A-AACTTACAT
* * * * *
57297440 AACTTACATAATACACAACTTACATAGCTTACTTAATACAT-AACTTACAT
1 AACTTATATAATACAAAACTTACATAACCTACATAATACATAAACTTACAT
* * *
57297490 AACTTATACACGTACATAACTTACATAA
1 AACTTATATA-ATACAAAACTTACATAA
57297518 TTTAGTTAAT
Statistics
Matches: 237, Mismatches: 39, Indels: 45
0.74 0.12 0.14
Matches are distributed among these distances:
50 22 0.09
51 14 0.06
52 78 0.33
53 14 0.06
54 46 0.19
55 10 0.04
56 8 0.03
57 8 0.03
58 2 0.01
59 10 0.04
60 11 0.05
62 14 0.06
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (51 bp):
AACTTATATAATACAAAACTTACATAACCTACATAATACATAAACTTACAT
Found at i:57297284 original size:79 final size:79
Alignment explanation
Indices: 57297173--57297470 Score: 356
Period size: 79 Copynumber: 3.7 Consensus size: 79
57297163 TTAGACAACT
* *
57297173 TACATAATACA--TAGCATACATAACTTACATAATACAAAACTTACATAACTTAAATATCTTACA
1 TACATAATACATTTAACTTACATAACTTACATAATACAAAACTTACATAACTTAAATATCTTACA
57297236 CAACTTACATAACC
66 CAACTTACATAACC
*
57297250 TACATAATACATTTAACTTACATAACTTATATAATACAAAACTTACATAACTTAAATATCTTACA
1 TACATAATACATTTAACTTACATAACTTACATAATACAAAACTTACATAACTTAAATATCTTACA
*
57297315 CAACTTACACAACC
66 CAACTTACATAACC
*
57297329 TACATAATACATTTAACTTACATAACTTACATAATACATAATAACTTAC--AACTTACATAATAC
1 TACATAATACATTTAACTTACATAACTTACATAATAC--AA-AACTTACATAACTTAAAT-AT-C
*
57297392 ATAATAACTTACAACTTACATAACA
61 -T--T-AC--ACAACTTACATAACC
* * *
57297417 TACAT--TACTTTGATAACTTACATAACTTACATAATACACAACTTACATAGCTTA
1 TACATAATACATT--TAACTTACATAACTTACATAATACAAAACTTACATAACTTA
57297471 CTTAATACAT
Statistics
Matches: 193, Mismatches: 11, Indels: 24
0.85 0.05 0.11
Matches are distributed among these distances:
77 11 0.06
79 98 0.51
80 8 0.04
81 4 0.02
82 8 0.04
83 1 0.01
85 8 0.04
86 8 0.04
87 5 0.03
88 42 0.22
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.32
Consensus pattern (79 bp):
TACATAATACATTTAACTTACATAACTTACATAATACAAAACTTACATAACTTAAATATCTTACA
CAACTTACATAACC
Found at i:57297388 original size:26 final size:26
Alignment explanation
Indices: 57297323--57297465 Score: 145
Period size: 26 Copynumber: 5.5 Consensus size: 26
57297313 CACAACTTAC
* *
57297323 ACAACCTACATAATACAT-TTAACTT
1 ACAACTTACATAATACATAATAACTT
57297348 ACATAACTTACATAATACATAATAACTT
1 AC--AACTTACATAATACATAATAACTT
57297376 ACAACTTACATAATACATAATAACTT
1 ACAACTTACATAATACATAATAACTT
*
57297402 ACAACTTACAT-A-ACATACATTACTTT
1 ACAACTTACATAATACATA-ATAAC-TT
*
57297428 GATAACTTACATAACTTACATAAT-AC--
1 -ACAACTTACATAA--TACATAATAACTT
57297454 ACAACTTACATA
1 ACAACTTACATA
57297466 GCTTACTTAA
Statistics
Matches: 103, Mismatches: 5, Indels: 20
0.80 0.04 0.16
Matches are distributed among these distances:
24 5 0.05
25 18 0.17
26 37 0.36
27 25 0.24
28 9 0.09
29 2 0.02
30 2 0.02
31 5 0.05
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (26 bp):
ACAACTTACATAATACATAATAACTT
Found at i:57299265 original size:18 final size:18
Alignment explanation
Indices: 57299242--57299281 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
57299232 CCCATAGAAA
57299242 TATTATTGATATTAATAT
1 TATTATTGATATTAATAT
57299260 TATTATTGATATTAATAT
1 TATTATTGATATTAATAT
57299278 TATT
1 TATT
57299282 TTATTCGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TATTATTGATATTAATAT
Found at i:57306640 original size:23 final size:23
Alignment explanation
Indices: 57306597--57306640 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
57306587 AAATTAAAAT
*
57306597 TAAAATTAAATTGATATAATTTA
1 TAAAATTAAATTGATAAAATTTA
*
57306620 TAAATATTAAA-TGTTAAAATT
1 TAAA-ATTAAATTGATAAAATT
57306641 ACTATTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (23 bp):
TAAAATTAAATTGATAAAATTTA
Found at i:57307509 original size:15 final size:15
Alignment explanation
Indices: 57307489--57307519 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
57307479 AAAAAGATCG
57307489 TTTTATAAACTCCGA
1 TTTTATAAACTCCGA
57307504 TTTTATAAACTCCGA
1 TTTTATAAACTCCGA
57307519 T
1 T
57307520 GACTCTACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (15 bp):
TTTTATAAACTCCGA
Found at i:57308972 original size:35 final size:33
Alignment explanation
Indices: 57308903--57308973 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
57308893 AAGAAAATCA
**
57308903 ATAAAATTATAAAAATATAAAATATATATGTGT
1 ATAAAATTATAAAAATATAAAATATATACATGT
**
57308936 ATAAAATTATGGAAATATGAAAAATATATACATGT
1 ATAAAATTATAAAAATAT--AAAATATATACATGT
57308971 ATA
1 ATA
57308974 CATATTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 16 0.50
35 16 0.50
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.34
Consensus pattern (33 bp):
ATAAAATTATAAAAATATAAAATATATACATGT
Found at i:57309082 original size:39 final size:39
Alignment explanation
Indices: 57309031--57309113 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
57309021 ATGTACATAC
* *
57309031 ATATATACGTATATAACTATCATAAAATATAAA-AAGTAT
1 ATATATACGTATATAACAACCATAAAATATAAAGAA-TAT
* **
57309070 ATATATAGGTATATATGAACCATAAAATATAAAGAATAT
1 ATATATACGTATATAACAACCATAAAATATAAAGAATAT
57309109 ATATA
1 ATATA
57309114 AAATATATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 36 0.95
40 2 0.05
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (39 bp):
ATATATACGTATATAACAACCATAAAATATAAAGAATAT
Found at i:57309201 original size:12 final size:12
Alignment explanation
Indices: 57309184--57309213 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
57309174 AAATGAAAAA
57309184 TATATAGATAGG
1 TATATAGATAGG
*
57309196 TATATAGATATG
1 TATATAGATAGG
57309208 TATATA
1 TATATA
57309214 AATTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (12 bp):
TATATAGATAGG
Found at i:57310717 original size:43 final size:43
Alignment explanation
Indices: 57310669--57310752 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
57310659 TCAACTCCAC
*
57310669 TGCACTTCAAAAAGTTACGACTTATAGCTTCAATCCACTCTAA
1 TGCACTTCAAAAAGATACGACTTATAGCTTCAATCCACTCTAA
* * * *
57310712 TGCACTTCAGAGAGATACGGCTTGTAGCTTCAATCCACTCT
1 TGCACTTCAAAAAGATACGACTTATAGCTTCAATCCACTCT
57310753 GCTGCAACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (43 bp):
TGCACTTCAAAAAGATACGACTTATAGCTTCAATCCACTCTAA
Found at i:57310901 original size:115 final size:115
Alignment explanation
Indices: 57310695--57310901 Score: 263
Period size: 115 Copynumber: 1.8 Consensus size: 115
57310685 ACGACTTATA
* * * * *
57310695 GCTTCAATCCACTCTAATGCACTTCAGAGAGATACGGCTTGTAGCTTCAATCCACTCTGCTGCAA
1 GCTTCAATCCACTCTAATACACTTCAGAGAGATACGACTTGTACCTTCAATCCACTCTACAGCAA
* * *
57310760 CTTTAGGGGGACGGGATTCATTGTTTTAGTCTGCTCCACTATGTCTCGTT
66 CTTCAGGGGGACGAGATTCATGGTTTTAGTCTGCTCCACTATGTCTCGTT
* * * * **
57310810 GCTTCAATCCGCTCTACTACACTTCAGAGATATATGACTTGTACCTTCAATCTTCT-TCACAGCA
1 GCTTCAATCCACTCTAATACACTTCAGAGAGATACGACTTGTACCTTCAATCCACTCT-ACAGCA
*
57310874 ACTTCAGGGGGATGAGATTCATGGTTTT
65 ACTTCAGGGGGACGAGATTCATGGTTTT
57310902 TTGATCTACT
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
114 1 0.01
115 75 0.99
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (115 bp):
GCTTCAATCCACTCTAATACACTTCAGAGAGATACGACTTGTACCTTCAATCCACTCTACAGCAA
CTTCAGGGGGACGAGATTCATGGTTTTAGTCTGCTCCACTATGTCTCGTT
Found at i:57311210 original size:89 final size:89
Alignment explanation
Indices: 57311059--57311559 Score: 617
Period size: 89 Copynumber: 5.6 Consensus size: 89
57311049 CTGCAAACTA
* * ** *
57311059 TGGTGTCTTCGATCTACTTCACTGTCAGTACAGGAAGGTGAGATCTGTTATCTTCAATCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
57311124 ACTGTCAGTACAGAAAGGTAAGGC
66 ACTGTCAATACAGAAAGGCAAGGC
* * * *
57311148 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGAAAGGCAAGATCTGCTATTTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* *
57311213 GCTGTCAATACAGGAAGGCAAGGC
66 ACTGTCAATACAGAAAGGCAAGGC
* * *
57311237 CGGTGTCTTCAATCTGCTTCGCTATCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
* * *
57311302 GCTGTTAATACAGAAAGGCAAGAC
66 ACTGTCAATACAGAAAGGCAAGGC
* * * * * *
57311326 TAGTGTCTTTGATCTGCTTTGCTATCAATACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
*
57311391 ACTGTCCATACAGAAAGGCAAGGC
66 ACTGTCAATACAGAAAGGCAAGGC
* * *
57311415 TGGTGTCTTCGATTTTCTTCGCTGTCAGTACAGGAAGG-AATGATCTATTATCTTCAGTCTGCTC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAA-GATCTGTTATCTTCAGTCTGCTC
* * ** ** *
57311479 TACTGTAAACCCAGGGAGGTAAGGC
65 CACTGTCAATACAGAAAGGCAAGGC
* * * * *
57311504 TAGTGTCTTCGATCTGCTTTGCTGTCAGTACAGGAAGGTAAGATCTGCTGTCTTCA
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCA
57311560 CTGATCTGTT
Statistics
Matches: 352, Mismatches: 58, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
88 2 0.01
89 348 0.99
90 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCC
ACTGTCAATACAGAAAGGCAAGGC
Found at i:57312767 original size:42 final size:42
Alignment explanation
Indices: 57312674--57312776 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 42
57312664 GCTCCCAATA
* * *
57312674 TGATCAAAATTTAAGCTACTCCGATCACCTCATGTCCCATTC
1 TGATCAAAATTTGAGCTGCTCCAATCACCTCATGTCCCATTC
* * * * *
57312716 CGATCAAAATTTGAGCTGCTCTAATCACCTTATGTCCTATTT
1 TGATCAAAATTTGAGCTGCTCCAATCACCTCATGTCCCATTC
*
57312758 TGATAAAAATTTGAGCTGC
1 TGATCAAAATTTGAGCTGC
57312777 CCTTTTCAAG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (42 bp):
TGATCAAAATTTGAGCTGCTCCAATCACCTCATGTCCCATTC
Found at i:57312869 original size:8 final size:8
Alignment explanation
Indices: 57312858--57312883 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
57312848 CATTTTTCAT
57312858 TTTTCTTC
1 TTTTCTTC
57312866 TTTTCTTC
1 TTTTCTTC
57312874 TTTTCTTC
1 TTTTCTTC
57312882 TT
1 TT
57312884 CTTTTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTCTTC
Found at i:57313017 original size:14 final size:15
Alignment explanation
Indices: 57312994--57313026 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
57312984 ATCAACGCTT
*
57312994 TTCCAGATAAGG-CC
1 TTCCACATAAGGTCC
57313008 TTCCACATAAGGTCC
1 TTCCACATAAGGTCC
57313023 TTCC
1 TTCC
57313027 CAGCTTGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGGTCC
Found at i:57315497 original size:51 final size:52
Alignment explanation
Indices: 57315398--57315502 Score: 160
Period size: 51 Copynumber: 2.0 Consensus size: 52
57315388 CGCTGAGGCC
*
57315398 TGATTGTGACAGAAGACCTGCGTGGGTGTACATCAGCTTGGGATTGTACATG
1 TGATTGTGACAGAAGACCTGCGTGGGTGTACATCAGCTTGGGACTGTACATG
* *
57315450 TGATTGTGACA-AAGGACCTGCGT-GGTGTACATCAGCTTGGGGCTGTACTTG
1 TGATTGTGACAGAA-GACCTGCGTGGGTGTACATCAGCTTGGGACTGTACATG
57315501 TG
1 TG
57315503 GAGAAGTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
51 29 0.59
52 20 0.41
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (52 bp):
TGATTGTGACAGAAGACCTGCGTGGGTGTACATCAGCTTGGGACTGTACATG
Found at i:57318104 original size:39 final size:39
Alignment explanation
Indices: 57318053--57318135 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
57318043 ATGTACATAC
* *
57318053 ATATATACGTATATAACTATCATAAAATATAAA-AAGTAT
1 ATATATACGTATATAACAACCATAAAATATAAAGAA-TAT
* **
57318092 ATATATAGGTATATATGAACCATAAAATATAAAGAATAT
1 ATATATACGTATATAACAACCATAAAATATAAAGAATAT
57318131 ATATA
1 ATATA
57318136 AAATATATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 36 0.95
40 2 0.05
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.33
Consensus pattern (39 bp):
ATATATACGTATATAACAACCATAAAATATAAAGAATAT
Found at i:57318353 original size:27 final size:27
Alignment explanation
Indices: 57318302--57318353 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
57318292 AAATTATGCG
* *
57318302 CATGTATATATATATATGATAAAAACA
1 CATGTATATATATATATAACAAAAACA
* *
57318329 CATGTATGTATATATATAACGAAAA
1 CATGTATATATATATATAACAAAAA
57318354 TTTTGAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.33
Consensus pattern (27 bp):
CATGTATATATATATATAACAAAAACA
Found at i:57324372 original size:19 final size:19
Alignment explanation
Indices: 57324348--57324384 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
57324338 TAAATTTGCT
*
57324348 ATTATTATCATTATTATTA
1 ATTATTATCATTACTATTA
*
57324367 ATTATTATTATTACTATT
1 ATTATTATCATTACTATT
57324385 TACTCATTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTATTATCATTACTATTA
Found at i:57327854 original size:40 final size:39
Alignment explanation
Indices: 57327810--57327912 Score: 145
Period size: 39 Copynumber: 2.6 Consensus size: 39
57327800 TGAGAATCGC
*
57327810 CGCTATAGGTAGATCATTAGCGGCACTT-TTTAAAAAATGT
1 CGCTATAGGT-GACCATTAGCGGCACTTCTTT-AAAAATGT
* *
57327850 CGCTATAGATGAGCATTAGCGGCACTTCTTTAAAAATGT
1 CGCTATAGGTGACCATTAGCGGCACTTCTTTAAAAATGT
57327889 CGCTATAGGTCGACCATTAGCGGC
1 CGCTATAGGT-GACCATTAGCGGC
57327913 GCTTGTTGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 33 0.58
40 24 0.42
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (39 bp):
CGCTATAGGTGACCATTAGCGGCACTTCTTTAAAAATGT
Found at i:57327871 original size:39 final size:39
Alignment explanation
Indices: 57327745--57327912 Score: 144
Period size: 39 Copynumber: 4.3 Consensus size: 39
57327735 AGCTTTACTG
* * *
57327745 GCATTAGCGGCGCGTTTTAAAAACGCCGCTATAGAT-GA
1 GCATTAGCGGCACTTTTTAAAAATGCCGCTATAGATAGA
* * * * * *
57327783 GAATTAGC-GAAGCTTCTTGAGAATCGCCGCTATAGGTAGA
1 GCATTAGCGGCA-CTTTTTAAAAAT-GCCGCTATAGATAGA
* *
57327823 TCATTAGCGGCACTTTTTAAAAAATGTCGCTATAGAT-GA
1 GCATTAGCGGCACTTTTT-AAAAATGCCGCTATAGATAGA
* * *
57327862 GCATTAGCGGCACTTCTTTAAAAATGTCGCTATAGGTCGA
1 GCATTAGCGGCACTT-TTTAAAAATGCCGCTATAGATAGA
*
57327902 CCATTAGCGGC
1 GCATTAGCGGC
57327913 GCTTGTTGAG
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
37 1 0.01
38 14 0.14
39 44 0.43
40 38 0.37
41 6 0.06
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (39 bp):
GCATTAGCGGCACTTTTTAAAAATGCCGCTATAGATAGA
Found at i:57327878 original size:79 final size:78
Alignment explanation
Indices: 57327746--57327912 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 78
57327736 GCTTTACTGG
* * *
57327746 CATTAGCGGCGCGTTTTAAAAACGCCGCTATAGATGAGAATTAGCGAAGCTTC-TTGAGAATCGC
1 CATTAGCGGCACGTTTTAAAAACGCCGCTATAGATGAGAATTAGCGAAGCTTCTTTAAAAAT-GC
*
57327810 CGCTATAGGTAGAT
65 CGCTATAGGTAGAC
* * * * *
57327824 CATTAGCGGCACTTTTTAAAAAATGTCGCTATAGATGAGCATTAGCGGCA-CTTCTTTAAAAATG
1 CATTAGCGGCACGTTTT-AAAAACGCCGCTATAGATGAGAATTAGC-GAAGCTTCTTTAAAAATG
* *
57327888 TCGCTATAGGTCGAC
64 CCGCTATAGGTAGAC
57327903 CATTAGCGGC
1 CATTAGCGGC
57327913 GCTTGTTGAG
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
78 15 0.20
79 52 0.69
80 8 0.11
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (78 bp):
CATTAGCGGCACGTTTTAAAAACGCCGCTATAGATGAGAATTAGCGAAGCTTCTTTAAAAATGCC
GCTATAGGTAGAC
Found at i:57328076 original size:116 final size:115
Alignment explanation
Indices: 57327889--57328108 Score: 289
Period size: 116 Copynumber: 1.9 Consensus size: 115
57327879 TTAAAAATGT
* * * * * *
57327889 CGCTATAGGTCGACCATTAGCGGCGCTTGTTGAGAAACACCGCAAAAAGTTTAAGCACAACGACA
1 CGCTATAGATCGACCATTAGCGGCGCTTCTTGAAAAACACCACAAAAAGATGAAGCACAACGACA
*
57327954 TTGTTTTATATTGAGCTTTTAGTGGCATTAACGGTGCTTTCCTGAAAACGC
66 TCGTTTTATATTGAGC-TTTAGTGGCATTAACGGTGCTTTCCTGAAAACGC
* * * *
57328005 CGCTATAGATTGACCATTAGCGGTGCTTCTTGAAAAACACCACAAGAAA-ATGAAGCACAATGCC
1 CGCTATAGATCGACCATTAGCGGCGCTTCTTGAAAAACACCACAA-AAAGATGAAGCACAACGAC
* * *
57328069 GTCGTTTTATGTTGAGCTTTAGTGGCATTAGCGGTGCTTT
65 ATCGTTTTATATTGAGCTTTAGTGGCATTAACGGTGCTTT
57328109 GTCAGAAACA
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
115 22 0.25
116 64 0.72
117 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (115 bp):
CGCTATAGATCGACCATTAGCGGCGCTTCTTGAAAAACACCACAAAAAGATGAAGCACAACGACA
TCGTTTTATATTGAGCTTTAGTGGCATTAACGGTGCTTTCCTGAAAACGC
Found at i:57328425 original size:7 final size:7
Alignment explanation
Indices: 57328415--57328595 Score: 62
Period size: 7 Copynumber: 25.7 Consensus size: 7
57328405 AATATGTATA
57328415 TTTAGGG
1 TTTAGGG
* *
57328422 TTTATGA
1 TTTAGGG
*
57328429 TGTA-GG
1 TTTAGGG
*
57328435 TTTATGG
1 TTTAGGG
*
57328442 TTTGGGG
1 TTTAGGG
*
57328449 TTTGGGG
1 TTTAGGG
**
57328456 TTTAAAG
1 TTTAGGG
*
57328463 TGTAGGG
1 TTTAGGG
* *
57328470 TTTATGA
1 TTTAGGG
*
57328477 TCTAGGG
1 TTTAGGG
*
57328484 TGTA-GG
1 TTTAGGG
*
57328490 TTTATGG
1 TTTAGGG
*
57328497 TTTAGTG
1 TTTAGGG
*
57328504 TTTAGTG
1 TTTAGGG
*
57328511 TTTATGG
1 TTTAGGG
*
57328518 TTTAAGGT
1 TTT-AGGG
*
57328526 TTTAGGT
1 TTTAGGG
57328533 TTTAAGGG
1 TTT-AGGG
57328541 -TTAGCGG
1 TTTAG-GG
* *
57328548 CTTATGG
1 TTTAGGG
*
57328555 TTTAGAG
1 TTTAGGG
*
57328562 ATTAGGGG
1 TTTA-GGG
* *
57328570 CTTATGG
1 TTTAGGG
* *
57328577 TCTAAGG
1 TTTAGGG
57328584 TTTAGGG
1 TTTAGGG
57328591 TTTAG
1 TTTAG
57328596 CTAAAATCAT
Statistics
Matches: 126, Mismatches: 41, Indels: 14
0.70 0.23 0.08
Matches are distributed among these distances:
6 11 0.09
7 99 0.79
8 16 0.13
ACGTcount: A:0.18, C:0.03, G:0.35, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:57328588 original size:22 final size:21
Alignment explanation
Indices: 57328534--57328590 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
57328524 GTTTTAGGTT
* *
57328534 TTAAGGGTTAGCGGCTTATGG
1 TTAAGGATTAGGGGCTTATGG
*
57328555 TTTAGAGATTAGGGGCTTATGG
1 TTAAG-GATTAGGGGCTTATGG
*
57328577 TCTAAGGTTTAGGG
1 T-TAAGGATTAGGG
57328591 TTTAGCTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 4 0.14
22 22 0.76
23 3 0.10
ACGTcount: A:0.21, C:0.07, G:0.37, T:0.35
Consensus pattern (21 bp):
TTAAGGATTAGGGGCTTATGG
Found at i:57329024 original size:23 final size:22
Alignment explanation
Indices: 57328998--57329075 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 22
57328988 CCCACTCAGC
*
57328998 TTTCCTCGATTTCATTTCCCCAA
1 TTTCC-CGAATTCATTTCCCCAA
*
57329021 TTTCCC-AATTCCTTCTCCCCCAA
1 TTTCCCGAATTCATT-T-CCCCAA
*
57329044 TTTCTTCCCCGAGTTCATTTCCCCAA
1 --T-TT-CCCGAATTCATTTCCCCAA
57329070 TTTCCC
1 TTTCCC
57329076 AACTGACCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
21 6 0.14
22 5 0.11
23 13 0.30
24 1 0.02
25 1 0.02
26 8 0.18
27 4 0.09
28 6 0.14
ACGTcount: A:0.15, C:0.41, G:0.04, T:0.40
Consensus pattern (22 bp):
TTTCCCGAATTCATTTCCCCAA
Found at i:57330326 original size:31 final size:32
Alignment explanation
Indices: 57330251--57330345 Score: 138
Period size: 34 Copynumber: 2.9 Consensus size: 32
57330241 GTTCAGAATT
*
57330251 TTTTGCAAGATGTTCTTACATCAAATTCTTTAG
1 TTTTGCAAGATGTTCTTACATCAAA-TCTATAG
57330284 TTTCTGCAAGATGTTCTTACATCAAATCTATAG
1 TTT-TGCAAGATGTTCTTACATCAAATCTATAG
*
57330317 -TTTGCAAGATGTTCTTACAACAAAATCTA
1 TTTTGCAAGATGTTCTTACATC-AAATCTA
57330346 ACTAGTCGTG
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
31 18 0.31
32 9 0.16
33 9 0.16
34 22 0.38
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.40
Consensus pattern (32 bp):
TTTTGCAAGATGTTCTTACATCAAATCTATAG
Found at i:57330521 original size:28 final size:29
Alignment explanation
Indices: 57330481--57330593 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 29
57330471 TTTTATTCGG
*
57330481 TTTAATGTAAATAAATTATTAATTTTCAA
1 TTTAATGTGAATAAATTATTAATTTTCAA
*
57330510 TTTAAT-TGAATAAATTATGTTTGATTAGTTTATTCAG
1 TTTAATGTGAATAAATTA---TT-A--A--TT-TTCAA
** *
57330547 TTTAATGTGAATAAATTATCGATTTTTAA
1 TTTAATGTGAATAAATTATTAATTTTCAA
57330576 TTTAAT-TGAATAAATTAT
1 TTTAATGTGAATAAATTAT
57330594 GTTTCATTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
28 22 0.32
29 15 0.22
30 2 0.03
31 2 0.03
32 2 0.03
34 1 0.01
35 1 0.01
36 2 0.03
37 10 0.15
38 11 0.16
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.50
Consensus pattern (29 bp):
TTTAATGTGAATAAATTATTAATTTTCAA
Found at i:57330523 original size:66 final size:66
Alignment explanation
Indices: 57330436--57330608 Score: 258
Period size: 66 Copynumber: 2.6 Consensus size: 66
57330426 TATTTAATTG
* * *
57330436 AATTTTTAA-TTAATTGAATAAATTATGTTTTATTATTTTATTCGGTTTAATGTAAATAAATTAT
1 AATTTTTAATTTAATTGAATAAATTATGTTTCATTAATTTATTCAGTTTAATGTAAATAAATTAT
*
57330500 T
66 C
* * * *
57330501 AATTTTCAATTTAATTGAATAAATTATGTTTGATTAGTTTATTCAGTTTAATGTGAATAAATTAT
1 AATTTTTAATTTAATTGAATAAATTATGTTTCATTAATTTATTCAGTTTAATGTAAATAAATTAT
57330566 C
66 C
*
57330567 GATTTTTAATTTAATTGAATAAATTATGTTTCATTAATTTAT
1 AATTTTTAATTTAATTGAATAAATTATGTTTCATTAATTTAT
57330609 CAATTTTTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
65 8 0.08
66 89 0.92
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (66 bp):
AATTTTTAATTTAATTGAATAAATTATGTTTCATTAATTTATTCAGTTTAATGTAAATAAATTAT
C
Found at i:57331020 original size:9 final size:9
Alignment explanation
Indices: 57331003--57331518 Score: 227
Period size: 9 Copynumber: 57.9 Consensus size: 9
57330993 AATTTAATAT
*
57331003 ATAATTTAC
1 ATAACTTAC
57331012 ATAACTTAC
1 ATAACTTAC
57331021 ATAACTTA-
1 ATAACTTAC
57331029 ATAACTTAC
1 ATAACTTAC
57331038 ATAA--TAC
1 ATAACTTAC
* *
57331045 ATAAATTAATAT
1 AT-AACT--TAC
*
57331057 ATAATTTAC
1 ATAACTTAC
*
57331066 ATAACTCAC
1 ATAACTTAC
57331075 ATAACTTA-
1 ATAACTTAC
57331083 ATAACTTAC
1 ATAACTTAC
57331092 ATAA--TAC
1 ATAACTTAC
* *
57331099 ATAAATTAATAT
1 AT-AACT--TAC
*
57331111 ATAATTTAC
1 ATAACTTAC
*
57331120 ATAACTCAC
1 ATAACTTAC
*
57331129 ATAACTTAT
1 ATAACTTAC
*
57331138 AAAACTTA-
1 ATAACTTAC
57331146 ATAACTTAC
1 ATAACTTAC
57331155 ATAA--TAC
1 ATAACTTAC
* *
57331162 ATAA-ATAT
1 ATAACTTAC
* * *
57331170 ATATCATATT
1 ATAACTTA-C
*
57331180 ATAACTCAC
1 ATAACTTAC
57331189 ATAACTTAC
1 ATAACTTAC
57331198 ATAACTTAC
1 ATAACTTAC
*
57331207 ATAACTT-T
1 ATAACTTAC
*
57331215 ATATCTTATC
1 ATAACTTA-C
* *
57331225 AAAACATAC
1 ATAACTTAC
57331234 ATAACTTAC
1 ATAACTTAC
*
57331243 ATAATTTTTA-
1 ATAA--CTTAC
** *
57331253 AGT-GTTTGC
1 A-TAACTTAC
*
57331262 TTAACTTAC
1 ATAACTTAC
57331271 ATAACTTA-
1 ATAACTTAC
*
57331279 ATATCTTAC
1 ATAACTTAC
57331288 ATAA--TAC
1 ATAACTTAC
* *
57331295 ATAA-ATAT
1 ATAACTTAC
* *
57331303 ATATCATATC
1 ATAACTTA-C
*
57331313 ATAACTCAC
1 ATAACTTAC
57331322 ATAACTTAC
1 ATAACTTAC
57331331 ATAACTTAC
1 ATAACTTAC
57331340 ATAA--TAC
1 ATAACTTAC
* *
57331347 ATAA-ATAT
1 ATAACTTAC
* *
57331355 ATATCATATC
1 ATAACTTA-C
*
57331365 AAAACTTAC
1 ATAACTTAC
*
57331374 ATAATTTAC
1 ATAACTTAC
*
57331383 ATAATTTAC
1 ATAACTTAC
*
57331392 ATAACTCAC
1 ATAACTTAC
57331401 ATAACTTAC
1 ATAACTTAC
57331410 ATAACTTA-
1 ATAACTTAC
*
57331418 ATAACTTAT
1 ATAACTTAC
* *
57331427 ATGTATCATATC
1 A--TAACTTA-C
57331439 ATAACTTAC
1 ATAACTTAC
**
57331448 ATAACACAC
1 ATAACTTAC
*
57331457 A-AATTTCAGAC
1 ATAACTT---AC
57331468 ATAACTTAC
1 ATAACTTAC
57331477 ATAA--TAC
1 ATAACTTAC
* *
57331484 ATAA-ATAT
1 ATAACTTAC
* *
57331492 ATATCATATC
1 ATAACTTA-C
57331502 ATAACTTAC
1 ATAACTTAC
57331511 ATAACTTA
1 ATAACTTA
57331519 ATTATACTTG
Statistics
Matches: 393, Mismatches: 73, Indels: 82
0.72 0.13 0.15
Matches are distributed among these distances:
7 38 0.10
8 74 0.19
9 215 0.55
10 33 0.08
11 20 0.05
12 13 0.03
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.36
Consensus pattern (9 bp):
ATAACTTAC
Found at i:57331059 original size:54 final size:54
Alignment explanation
Indices: 57330996--57331210 Score: 292
Period size: 54 Copynumber: 3.9 Consensus size: 54
57330986 ATATTTTAAT
*
57330996 TTAATATATAATTTACATAACTTACATAACTTAATAACTTACATAATACATAAA
1 TTAATATATAATTTACATAACTCACATAACTTAATAACTTACATAATACATAAA
57331050 TTAATATATAATTTACATAACTCACATAACTTAATAACTTACATAATACATAAA
1 TTAATATATAATTTACATAACTCACATAACTTAATAACTTACATAATACATAAA
*
57331104 TTAATATATAATTTACATAACTCACATAACTTATAAAACTTA-ATAACTTACATAATACA
1 TTAATATATAATTTACATAACTCACATAACTTA-ATAACTTACATAA--TACAT-A-A-A
*
57331163 TAAATATATATCATATT--ATAACTCACATAACTTACATAACTTACATAA
1 TTAATATATA--AT-TTACATAACTCACATAACTTA-ATAACTTACATAA
57331211 CTTTATATCT
Statistics
Matches: 146, Mismatches: 5, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
54 90 0.62
55 7 0.05
56 5 0.03
57 1 0.01
58 1 0.01
59 10 0.07
60 24 0.16
61 6 0.04
62 2 0.01
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (54 bp):
TTAATATATAATTTACATAACTCACATAACTTAATAACTTACATAATACATAAA
Done.