Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 203 of 228
Found at i:59575708 original size:51 final size:51
Alignment explanation
Indices: 59575652--59575758 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
59575642 ATGATGGAGC
* * * *
59575652 ATGAACTTTTATTTCGCATGAAG-TGTTATTTGATATGAACTGATATTTCAT
1 ATGAACTATTATTTCGCATG-AGTTGTCATTTGATAAGAAATGATATTTCAT
* * *
59575703 ATGAACTATTATTTTGCATGAGTTGTCATTTGGTAAGAAATGTTATTTCAT
1 ATGAACTATTATTTCGCATGAGTTGTCATTTGATAAGAAATGATATTTCAT
59575754 ATGAA
1 ATGAA
59575759 TAGATGTTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.04
51 46 0.96
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (51 bp):
ATGAACTATTATTTCGCATGAGTTGTCATTTGATAAGAAATGATATTTCAT
Found at i:59578936 original size:9 final size:9
Alignment explanation
Indices: 59578922--59578970 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
59578912 GTAGTGATTC
59578922 AATTCGGTT
1 AATTCGGTT
59578931 AATTCGAG-T
1 AATTCG-GTT
*
59578940 AATCCGGTT
1 AATTCGGTT
59578949 AATTCGGTT
1 AATTCGGTT
*
59578958 AATTCAGTT
1 AATTCGGTT
59578967 AATT
1 AATT
59578971 TTTAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 1 0.03
9 33 0.94
10 1 0.03
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:59579671 original size:43 final size:43
Alignment explanation
Indices: 59579624--59579916 Score: 263
Period size: 43 Copynumber: 6.8 Consensus size: 43
59579614 TAAAAGTCAT
* * *
59579624 GACCTTTAGCGGCGCTTTTCCCACAAATGCCACTAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCAG
* * * * *
59579667 GACCTTTAACGACGC-TGTCCTCACAAACGCCACTATAGACCAT
1 GACCTTTAGCGGCGCTTTTCC-CACAAACGCCGCTATAGACCAG
* ** **
59579710 AACCTTTAGCTACGCTTTTGTCACAAACGCCGCTATAGACCATG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCA-G
*
59579754 G-CCTTTAGCGGCGCTTTTCCCACAAACACCGCTATAGACCATG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCA-G
** * * *
59579797 G-CCTTTAGCGGCGCTTTTGTCACAAACGCCGCTAAAGAACAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCAG
* * ** * *
59579839 GACCTTTAGCAGTGCTTTTTTTCAAAAACGCCGCTATAGAACA-
1 GACCTTTAGCGGCGC-TTTTCCCACAAACGCCGCTATAGACCAG
* *
59579882 AACCTTTAGCGGCGCTTCTCGCCA-AAACGCCGCTA
1 GACCTTTAGCGGCGCTTTTC-CCACAAACGCCGCTA
59579917 AAAACATATC
Statistics
Matches: 207, Mismatches: 37, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
42 19 0.09
43 162 0.78
44 26 0.13
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCAG
Found at i:59579847 original size:86 final size:86
Alignment explanation
Indices: 59579625--59579923 Score: 309
Period size: 86 Copynumber: 3.5 Consensus size: 86
59579615 AAAAGTCATG
* * * * * * * *
59579625 ACCTTTAGCGGCGCTTTTCCCACAAATGCCACTAAAGACCAGGACCTTTAACGACGC-TGTCCTC
1 ACCTTTAGCGGCGCTTTTGCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCC-C
*
59579689 ACAAACGCCACTATAGACCATA
65 ACAAACGCCGCTATAGACCATA
** * * * *
59579711 ACCTTTAGCTACGCTTTTGTCACAAACGCCGCTATAGACCATGGCCTTTAGCGGCGCTTTTCCCA
1 ACCTTTAGCGGCGCTTTTGCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCA
* *
59579776 CAAACACCGCTATAGACCATG
66 CAAACGCCGCTATAGACCATA
* * * * **
59579797 GCCTTTAGCGGCGCTTTTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCAGTGCTTTTTTTC
1 ACCTTTAGCGGCGCTTTTGCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTTCCC
* *
59579862 AAAAACGCCGCTATAGAACA-A
65 ACAAACGCCGCTATAGACCATA
*
59579883 ACCTTTAGCGGCGCTTCTCGCCA-AAACGCCGCTAAA-AACAT
1 ACCTTTAGCGGCGCTT-TTGCCACAAACGCCGCTAAAGAACAT
59579924 ATCATGCAAA
Statistics
Matches: 178, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
85 5 0.03
86 143 0.80
87 30 0.17
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (86 bp):
ACCTTTAGCGGCGCTTTTGCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCA
CAAACGCCGCTATAGACCATA
Found at i:59579915 original size:129 final size:129
Alignment explanation
Indices: 59579625--59579918 Score: 344
Period size: 129 Copynumber: 2.3 Consensus size: 129
59579615 AAAAGTCATG
* *
59579625 ACCTTTAGCGGCGCTTTTCCCACAAATGCCACTAAAGACCAGGACCTTTAACGACGCTGTCCTCA
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAACGACGCTGTCCTCA
* * * * *
59579690 CAAACGCCACTATAGACCATAACCTTTAGCTACGCTTTTGTCACAAACGCCGCTATAGACCATG
66 CAAACGCCACTAAAGAACATAACCTTTAGCTACGCTTTTGTCAAAAACGCCGCTATAGAACATA
* * * * * * **
59579754 GCCTTTAGCGGCGCTTTTCCCACAAACACCGCTATAGACCATGG-CCTTTAGCGGCGCTTTTGTC
1 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA-GGACCTTTAACGACGCTGTCCTC
* * * *
59579818 ACAAACGCCGCTAAAGAACATGACCTTTAGC-AGTGCTTTTTTTCAAAAACGCCGCTATAGAACA
65 ACAAACGCCACTAAAGAACATAACCTTTAGCTA-CGC-TTTTGTCAAAAACGCCGCTATAGAACA
59579882 -A
128 TA
*
59579883 ACCTTTAGCGGCGCTTCTCGCCA-AAACGCCGCTAAA
1 ACCTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAAA
59579919 AACATATCAT
Statistics
Matches: 138, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
128 1 0.01
129 108 0.78
130 29 0.21
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (129 bp):
ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAACGACGCTGTCCTCA
CAAACGCCACTAAAGAACATAACCTTTAGCTACGCTTTTGTCAAAAACGCCGCTATAGAACATA
Found at i:59584869 original size:30 final size:28
Alignment explanation
Indices: 59584799--59584870 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 28
59584789 ATTATAAAAA
*
59584799 TAAAAGTTTAAAATCTTTTTCAATTTTT
1 TAAAAATTTAAAATCTTTTTCAATTTTT
59584827 TAAAAAAATTTAAAATC-TTTTCAAATTCATTT
1 T--AAAAATTTAAAATCTTTTTC-AATT--TTT
*
59584859 TAAAATTTTAAA
1 TAAAAATTTAAA
59584871 TCATGAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 1 0.03
29 5 0.14
30 27 0.73
32 4 0.11
ACGTcount: A:0.44, C:0.07, G:0.01, T:0.47
Consensus pattern (28 bp):
TAAAAATTTAAAATCTTTTTCAATTTTT
Found at i:59586184 original size:41 final size:41
Alignment explanation
Indices: 59586127--59586230 Score: 181
Period size: 41 Copynumber: 2.5 Consensus size: 41
59586117 AGATTTTATT
* *
59586127 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAGAGGTACGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGTACAAGC
59586168 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGTACAAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGTACAAGC
*
59586209 ATTAGCGGCGCTTGTTCAAAAA
1 ATTAGCGGCGCTTCTTCAAAAA
59586231 TGCCACTATA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGTACAAGC
Found at i:59586393 original size:40 final size:39
Alignment explanation
Indices: 59586280--59586430 Score: 132
Period size: 40 Copynumber: 3.9 Consensus size: 39
59586270 TGGGCTTAGG
* * *
59586280 TTTTTTGCGGCGCTTTTTG-AAAAACGCCGCTAATGCTT
1 TTTTTAGCGGCGCTTTTTGTAAAAGCGCCGCTAATGCTA
** *
59586318 TTTTTAGCGGCG--TTTTCCAAATGCGCCGCTAATGCTCAA
1 TTTTTAGCGGCGCTTTTTGTAAAAGCGCCGCTAATGCT--A
*
59586357 TCTTTAGCGGCG-TTTTTGTAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGCTTTTTGTAAAAGCGCCGCTAATGC-T-A
* * *
59586397 TTTTTAGTGGCGTTTTTTGTCCAAA-CGCCGCTAA
1 TTTTTAGCGGCGCTTTTTGT-AAAAGCGCCGCTAA
59586431 AAGTGCCGCC
Statistics
Matches: 93, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
36 4 0.04
37 16 0.17
38 11 0.12
39 11 0.12
40 31 0.33
41 17 0.18
42 3 0.03
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (39 bp):
TTTTTAGCGGCGCTTTTTGTAAAAGCGCCGCTAATGCTA
Found at i:59586426 original size:41 final size:40
Alignment explanation
Indices: 59586304--59586430 Score: 140
Period size: 40 Copynumber: 3.2 Consensus size: 40
59586294 TTTTGAAAAA
59586304 CGCCGCTAATGCTT-TTTTTAGCGGCG--TTT-TCCAAATG
1 CGCCGCTAATGCTTATTTTTAGCGGCGTTTTTGTCCAAA-G
* * *
59586341 CGCCGCTAATGCTCAATCTTTAGCGGCGTTTTTGT-AAAAG
1 CGCCGCTAATGCT-TATTTTTAGCGGCGTTTTTGTCCAAAG
*
59586381 CGCCGCTAATGCTTGATTTTTAGTGGCGTTTTTTGTCCAAA-
1 CGCCGCTAATGCTT-ATTTTTAGCGGCG-TTTTTGTCCAAAG
59586422 CGCCGCTAA
1 CGCCGCTAA
59586431 AAGTGCCGCC
Statistics
Matches: 75, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
37 13 0.17
39 11 0.15
40 25 0.33
41 22 0.29
42 4 0.05
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (40 bp):
CGCCGCTAATGCTTATTTTTAGCGGCGTTTTTGTCCAAAG
Found at i:59590477 original size:23 final size:23
Alignment explanation
Indices: 59590445--59590524 Score: 65
Period size: 24 Copynumber: 3.5 Consensus size: 23
59590435 CTACCCTGTT
*
59590445 TTGGATAGCATTTATACATCAAA
1 TTGGACAGCATTTATACATCAAA
* *
59590468 TTGGACAGCATCGATATGC-TCAAA
1 TTGGACAGCAT--TTATACATCAAA
* * *
59590492 CTGGACAACA-TTATACATTAAA
1 TTGGACAGCATTTATACATCAAA
*
59590514 GTGGACAGCAT
1 TTGGACAGCAT
59590525 CAATATGCTC
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
21 4 0.09
22 12 0.28
23 10 0.23
24 13 0.30
25 4 0.09
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (23 bp):
TTGGACAGCATTTATACATCAAA
Found at i:59590496 original size:24 final size:23
Alignment explanation
Indices: 59590463--59590572 Score: 109
Period size: 24 Copynumber: 4.7 Consensus size: 23
59590453 CATTTATACA
*
59590463 TCAAATTGGACAGCATCGATATGC
1 TCAAA-TGGACAGCATCAATATGC
* *
59590487 TCAAACTGGACA--A-CATTATAC
1 TCAAA-TGGACAGCATCAATATGC
*
59590508 ATTAAAGTGGACAGCATCAATATGC
1 -TCAAA-TGGACAGCATCAATATGC
59590533 TCTAAATGGACAGCATCAATATGC
1 TC-AAATGGACAGCATCAATATGC
59590557 TCAAAATGGACAGCAT
1 TC-AAATGGACAGCAT
59590573 TATACATCTA
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
21 5 0.07
22 11 0.15
24 46 0.65
25 9 0.13
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (23 bp):
TCAAATGGACAGCATCAATATGC
Found at i:59590523 original size:46 final size:46
Alignment explanation
Indices: 59590456--59590544 Score: 135
Period size: 46 Copynumber: 1.9 Consensus size: 46
59590446 TGGATAGCAT
* *
59590456 TTATACATCAAATTGGACAGCATCGATATGCTC-AAACTGGACAACA
1 TTATACATCAAAGTGGACAGCATCAATATGCTCTAAA-TGGACAACA
*
59590502 TTATACATTAAAGTGGACAGCATCAATATGCTCTAAATGGACA
1 TTATACATCAAAGTGGACAGCATCAATATGCTCTAAATGGACA
59590545 GCATCAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
46 36 0.92
47 3 0.08
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (46 bp):
TTATACATCAAAGTGGACAGCATCAATATGCTCTAAATGGACAACA
Found at i:59591309 original size:41 final size:39
Alignment explanation
Indices: 59591262--59591397 Score: 139
Period size: 41 Copynumber: 3.4 Consensus size: 39
59591252 TTGCCATCGT
* *
59591262 ATAGCCGAAGCTATTATAATCTCGCACACTAAGTGCCTTAC
1 ATAGCCGAAGCTATTA-AATCT-GCACACTAAGTGCCATAA
* * * *
59591303 ATAGCCGAAGCTATCTCAGTCTTGCACACTAAGTGTCATAT
1 ATAGCCGAAGCTAT-TAAATC-TGCACACTAAGTGCCATAA
* *
59591344 ATAGCTGAATCTATTCCAAAT-TGCACACTAAGTGCCATAA
1 ATAGCCGAAGCTATT--AAATCTGCACACTAAGTGCCATAA
59591384 ATAGCCGAAGCTAT
1 ATAGCCGAAGCTAT
59591398 CTCGAATTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
40 30 0.38
41 44 0.56
42 4 0.05
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (39 bp):
ATAGCCGAAGCTATTAAATCTGCACACTAAGTGCCATAA
Found at i:59592371 original size:14 final size:13
Alignment explanation
Indices: 59592348--59592377 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
59592338 TGTATTTTTA
59592348 TTTCTTTTTTATT
1 TTTCTTTTTTATT
59592361 TTTCGTTTTTTATT
1 TTTC-TTTTTTATT
59592375 TTT
1 TTT
59592378 AGCCTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.07, C:0.07, G:0.03, T:0.83
Consensus pattern (13 bp):
TTTCTTTTTTATT
Found at i:59593712 original size:12 final size:12
Alignment explanation
Indices: 59593680--59593713 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
59593670 TTATTTCAAC
59593680 TTATATATATTA
1 TTATATATATTA
*
59593692 TCATATATATTA
1 TTATATATATTA
*
59593704 TTATTTATAT
1 TTATATATAT
59593714 CAAGTTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATATATATTA
Found at i:59597323 original size:28 final size:28
Alignment explanation
Indices: 59597279--59597348 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
59597269 TATACATATA
*
59597279 TTATAT-ATATATGTGCATGACTTCATC
1 TTATATAATATATATGCATGACTTCATC
* * *
59597306 TTATATAATATATATGCATGTCTTTATT
1 TTATATAATATATATGCATGACTTCATC
**
59597334 TTACCTAATATATAT
1 TTATATAATATATAT
59597349 TAATGGATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 6 0.17
28 30 0.83
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (28 bp):
TTATATAATATATATGCATGACTTCATC
Found at i:59597375 original size:5 final size:5
Alignment explanation
Indices: 59597365--59597423 Score: 118
Period size: 5 Copynumber: 11.8 Consensus size: 5
59597355 ATTTTGGTAT
59597365 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
59597415 TATAA TATA
1 TATAA TATA
59597424 TGCATGGTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:59597775 original size:36 final size:36
Alignment explanation
Indices: 59597728--59597809 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
59597718 TTGTGAACCA
* * *
59597728 TGTTAACTTGGTGAAT-TATATTATTATGGCGAACTG
1 TGTTAATTTGGT-AATCTATATTAATATGGCAAACTG
*
59597764 TGTTAATTTGGTAATCTGTATTAATATGGCAAACTG
1 TGTTAATTTGGTAATCTATATTAATATGGCAAACTG
**
59597800 CATTAATTTG
1 TGTTAATTTG
59597810 TCAAACTGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 3 0.08
36 36 0.92
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.43
Consensus pattern (36 bp):
TGTTAATTTGGTAATCTATATTAATATGGCAAACTG
Found at i:59597787 original size:18 final size:18
Alignment explanation
Indices: 59597754--59597818 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
59597744 TATATTATTA
* *
59597754 TGGCGAACTGTGTTAATT
1 TGGCAAACTGTATTAATT
* * *
59597772 TGGTAATCTGTATTAATA
1 TGGCAAACTGTATTAATT
*
59597790 TGGCAAACTGCATTAATT
1 TGGCAAACTGTATTAATT
*
59597808 TGTCAAACTGT
1 TGGCAAACTGT
59597819 GTATTGTGAG
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (18 bp):
TGGCAAACTGTATTAATT
Found at i:59598377 original size:23 final size:23
Alignment explanation
Indices: 59598347--59598392 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
59598337 TATCCAATAT
59598347 GTGGTGATAGAGTCCACTTATAG
1 GTGGTGATAGAGTCCACTTATAG
59598370 GTGGTGATAGAGTCCACTTATAG
1 GTGGTGATAGAGTCCACTTATAG
59598393 AGTCTCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (23 bp):
GTGGTGATAGAGTCCACTTATAG
Found at i:59598528 original size:51 final size:51
Alignment explanation
Indices: 59598465--59598572 Score: 146
Period size: 51 Copynumber: 2.1 Consensus size: 51
59598455 CTGATAGAGC
* * *
59598465 ATGAACTTTTATTTCGCATGAAG-TGTTATTCGGTATGAACTGATATTTCAT
1 ATGAACTATTATTTCGCATG-AGTTGTCATTCGGTAAGAACTGATATTTCAT
* * *
59598516 ATGAACTATTATTTTGCATGAGTTGTCATTTGGTAAGAACTGTTATTTCAT
1 ATGAACTATTATTTCGCATGAGTTGTCATTCGGTAAGAACTGATATTTCAT
59598567 ATGAAC
1 ATGAAC
59598573 AGATGTTTTG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
50 2 0.04
51 48 0.96
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (51 bp):
ATGAACTATTATTTCGCATGAGTTGTCATTCGGTAAGAACTGATATTTCAT
Found at i:59598572 original size:17 final size:17
Alignment explanation
Indices: 59598465--59598572 Score: 74
Period size: 17 Copynumber: 6.4 Consensus size: 17
59598455 CTGATAGAGC
* *
59598465 ATGAACTTTTATTTCGC
1 ATGAACTGTTATTTCGT
*
59598482 ATGAAGTGTTA-TTCGGT
1 ATGAACTGTTATTTC-GT
* *
59598499 ATGAACTGATATTTCAT
1 ATGAACTGTTATTTCGT
* * *
59598516 ATGAACTATTATTTTGC
1 ATGAACTGTTATTTCGT
** * *
59598533 ATGAGTTGTCATTTGGT
1 ATGAACTGTTATTTCGT
* *
59598550 AAGAACTGTTATTTCAT
1 ATGAACTGTTATTTCGT
59598567 ATGAAC
1 ATGAAC
59598573 AGATGTTTTG
Statistics
Matches: 65, Mismatches: 24, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
16 3 0.05
17 59 0.91
18 3 0.05
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (17 bp):
ATGAACTGTTATTTCGT
Found at i:59601433 original size:123 final size:125
Alignment explanation
Indices: 59601213--59601494 Score: 437
Period size: 123 Copynumber: 2.3 Consensus size: 125
59601203 ATTATTTTGA
*
59601213 TTTGACGTTTCTG-GTCAAATAGTAGAAAATCG-TATCTACCAGGATGCTATTTGAGAAGAAATT
1 TTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTATCTACCAGGATGCTATTTGAGAAGAAATT
* * *
59601276 GTGAAATCGTGCCCTCGTGGACGTGATTTTGCTACAGTTGGTCATGTAAGAAATAAA-TTT
65 GTGAAATCGAGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAATTTT
* *
59601336 TTTGACGTTTCTGAGCAAATAGTATAAAATCGCT-TCTACCAGGATGCTATTTTAGAAGGAATTG
1 TTTGACGTTTCTGAGCAAATAGTATAAAATCGCTATCTACCAGGATGCTATTTGAGAAGAAATTG
59601400 TGAAATCGAGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAATTTTTT
66 TGAAATCGAGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAA--TTTT
* *
59601462 TTTGACGTTTCTGAACAAATAATATAAAATCGC
1 TTTGACGTTTCTGAGCAAATAGTATAAAATCGC
59601495 GCCCCCGTGG
Statistics
Matches: 146, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
123 110 0.75
124 2 0.01
126 34 0.23
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (125 bp):
TTTGACGTTTCTGAGCAAATAGTATAAAATCGCTATCTACCAGGATGCTATTTGAGAAGAAATTG
TGAAATCGAGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAATTTT
Found at i:59602735 original size:15 final size:15
Alignment explanation
Indices: 59602698--59602729 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
59602688 TACAAAGGTC
59602698 CACATACATGTGCTG
1 CACATACATGTGCTG
59602713 CACATACATGTGCTG
1 CACATACATGTGCTG
59602728 CA
1 CA
59602730 GGTACAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (15 bp):
CACATACATGTGCTG
Found at i:59604609 original size:23 final size:23
Alignment explanation
Indices: 59604583--59604689 Score: 88
Period size: 23 Copynumber: 4.2 Consensus size: 23
59604573 TTTGTTAATG
59604583 GTTAGAGTTTTTAATTAAATTAA
1 GTTAGAGTTTTTAATTAAATTAA
*
59604606 GTTAGGGTTTAGGGTTTTTAATTAAATTAGGTT
1 GTTA--G---A--GTTTTTAATTAAATTA---A
*
59604639 GTTAGGGTTTTTAATTAAATTAA
1 GTTAGAGTTTTTAATTAAATTAA
* *
59604662 GTTAGAGTTTTTAAATAAATTAG
1 GTTAGAGTTTTTAATTAAATTAA
59604685 GTTAG
1 GTTAG
59604690 GGTTAGGGTT
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
23 29 0.43
25 1 0.01
26 16 0.24
28 1 0.01
30 16 0.24
31 1 0.01
33 4 0.06
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (23 bp):
GTTAGAGTTTTTAATTAAATTAA
Found at i:59604695 original size:29 final size:29
Alignment explanation
Indices: 59604582--59604829 Score: 354
Period size: 29 Copynumber: 8.8 Consensus size: 29
59604572 TTTTGTTAAT
* *
59604582 GGTTAGAGTTTTTAATTAAATTAAGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
59604611 GGTTTAGGGTTTTTAATTAAATTAGGTT--
1 GG-TTAGGGTTTTTAATTAAATTAGGTTAG
59604639 -GTTAGGGTTTTTAATTAAATTA----A-
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
59604662 -GTTAGAGTTTTTAAATAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
59604690 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
59604719 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
59604748 GGTTTAGGG-TTTTAATTAAATTAGGGTAG
1 GG-TTAGGGTTTTTAATTAAATTAGGTTAG
59604777 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
59604806 GGTTTAGGGTTTTTAATTAAATTA
1 GG-TTAGGGTTTTTAATTAAATTA
59604830 AGATTTTTAT
Statistics
Matches: 200, Mismatches: 8, Indels: 21
0.87 0.03 0.09
Matches are distributed among these distances:
23 20 0.10
26 21 0.10
27 2 0.01
28 6 0.03
29 101 0.50
30 50 0.25
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.46
Consensus pattern (29 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:59605386 original size:18 final size:18
Alignment explanation
Indices: 59605352--59605386 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
59605342 CGGAAACGGA
* *
59605352 TACATATACGGGTTAGGG
1 TACATATAAGGGCTAGGG
59605370 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
59605387 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:59606047 original size:7 final size:7
Alignment explanation
Indices: 59606037--59606068 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
59606027 TTATATACAT
*
59606037 AATACAA
1 AATACTA
59606044 AATACTA
1 AATACTA
59606051 AATACTA
1 AATACTA
59606058 AATACTA
1 AATACTA
59606065 AATA
1 AATA
59606069 TCAATCCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
AATACTA
Found at i:59607186 original size:31 final size:31
Alignment explanation
Indices: 59607150--59607216 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
59607140 GCCATTGATG
* *
59607150 AAAATATAAAAAAAATTAAATTTATTTTTAA
1 AAAATATAAAAAAAATTAAAATTATTTTAAA
*
59607181 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAAATTAAAATTATTTTAAA
59607212 AAAAT
1 AAAAT
59607217 GAAATTGAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (31 bp):
AAAATATAAAAAAAATTAAAATTATTTTAAA
Found at i:59607275 original size:22 final size:22
Alignment explanation
Indices: 59607250--59607299 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
59607240 TAATATGGAT
59607250 TTGAGA-GATTTTTGGAAGGAAA
1 TTGAGAGGA-TTTTGGAAGGAAA
59607272 TTGAGAGGATTTTGGAAGGAAA
1 TTGAGAGGATTTTGGAAGGAAA
59607294 TTGAGA
1 TTGAGA
59607300 TAGGATTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 25 0.93
23 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.34, T:0.30
Consensus pattern (22 bp):
TTGAGAGGATTTTGGAAGGAAA
Found at i:59607523 original size:29 final size:28
Alignment explanation
Indices: 59607482--59607547 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
59607472 GATTTCCCGG
*
59607482 AAAATGGACCATTCCTGTAAATAATAAA
1 AAAATGGACCATTCCGGTAAATAATAAA
* * **
59607510 AAAATCGGCCCATTTCGGTAAATTTTAAA
1 AAAAT-GGACCATTCCGGTAAATAATAAA
*
59607539 AAAAAGGAC
1 AAAATGGAC
59607548 TCTTTTTGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.24
Consensus pattern (28 bp):
AAAATGGACCATTCCGGTAAATAATAAA
Found at i:59616305 original size:20 final size:20
Alignment explanation
Indices: 59616280--59616317 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
59616270 ACTCCCATCA
59616280 GTAGTAATAGTAAATGAGTT
1 GTAGTAATAGTAAATGAGTT
*
59616300 GTAGTATTAGTAAATGAG
1 GTAGTAATAGTAAATGAG
59616318 CCCAACGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.34
Consensus pattern (20 bp):
GTAGTAATAGTAAATGAGTT
Found at i:59622057 original size:21 final size:21
Alignment explanation
Indices: 59622019--59622058 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
59622009 TAAAAATGAT
* *
59622019 ATATTTATATTATTGATTGTG
1 ATATTAATATTATCGATTGTG
*
59622040 ATATTAATATTGTCGATTG
1 ATATTAATATTATCGATTG
59622059 CAAAATATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.53
Consensus pattern (21 bp):
ATATTAATATTATCGATTGTG
Found at i:59624551 original size:4 final size:4
Alignment explanation
Indices: 59624542--59624572 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
59624532 ATTTTTATTT
*
59624542 TTAA TTAA TTAA TTAA TTAA TTAA TCAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTA
59624573 TCTTTAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (4 bp):
TTAA
Found at i:59625537 original size:61 final size:61
Alignment explanation
Indices: 59625467--59625592 Score: 173
Period size: 61 Copynumber: 2.1 Consensus size: 61
59625457 CACACGAGCG
* * *
59625467 TGTGCAAGGCCATGTGGACCACACAGGCCAGCTACCTA-AGTCGTGTTAATCCACATGGGCA
1 TGTGCAAGGCCATGTGGACCACACAGACCAGCAACCTAGA-CCGTGTTAATCCACATGGGCA
* * * *
59625528 TGTGTAAGGCTATGTGGATCACACAGACCAGCAACCTAGACCGTGTTAATCCACATGGGCG
1 TGTGCAAGGCCATGTGGACCACACAGACCAGCAACCTAGACCGTGTTAATCCACATGGGCA
59625589 TGTG
1 TGTG
59625593 GGCCAAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 56 0.98
62 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.21
Consensus pattern (61 bp):
TGTGCAAGGCCATGTGGACCACACAGACCAGCAACCTAGACCGTGTTAATCCACATGGGCA
Found at i:59627504 original size:170 final size:170
Alignment explanation
Indices: 59627222--59627563 Score: 659
Period size: 170 Copynumber: 2.0 Consensus size: 170
59627212 GTGCAGTGTC
*
59627222 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCGTCTAGGAGGGCACTCAACCCAAACACA
1 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
59627287 TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
66 TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
59627352 CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAGAGGA
131 CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAGAGGA
59627392 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
1 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
59627457 TCACTTAGG-ATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGC
66 TCACTT-GGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGC
59627521 CCGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAGAGGA
130 CCGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAGAGGA
59627562 TC
1 TC
59627564 GTGCCAGAGT
Statistics
Matches: 170, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
170 168 0.99
171 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (170 bp):
TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAGAGGA
Found at i:59640088 original size:19 final size:18
Alignment explanation
Indices: 59640051--59640098 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
59640041 TACTATGTTA
59640051 CAAAATACAAAAATATTTT
1 CAAAATA-AAAAATATTTT
*
59640070 CAAAATAAAAATATTTTTT
1 CAAAATAAAAA-ATATTTT
*
59640089 CAATATAAAA
1 CAAAATAAAA
59640099 TGCTCATGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (18 bp):
CAAAATAAAAAATATTTT
Found at i:59642160 original size:17 final size:17
Alignment explanation
Indices: 59642127--59642171 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
59642117 CGCGTAAGAC
* *
59642127 AACAGTCCATATGAAAT
1 AACAGTTCATATAAAAT
*
59642144 AATAGTTCATATAAAAT
1 AACAGTTCATATAAAAT
*
59642161 AGCAGTTCATA
1 AACAGTTCATA
59642172 CAACATCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (17 bp):
AACAGTTCATATAAAAT
Found at i:59643072 original size:23 final size:23
Alignment explanation
Indices: 59643006--59643183 Score: 189
Period size: 24 Copynumber: 7.6 Consensus size: 23
59642996 ACATATACCA
**
59643006 AGTGATAAGGGTTCATACATGTCT
1 AGTGAT-AGGGTTCGCACATGTCT
* *
59643030 GGTGATAGGGGTTCGTACATGTCT
1 AGTGATA-GGGTTCGCACATGTCT
*
59643054 GGTGATAGGGTTCGCACATGTCT
1 AGTGATAGGGTTCGCACATGTCT
*
59643077 AGTGATATGGTTCGCACATGTCT
1 AGTGATAGGGTTCGCACATGTCT
**
59643100 -GTGATAGGGGTT-ATACATGTCT
1 AGTGATA-GGGTTCGCACATGTCT
*
59643122 AGTGATAGGTGTTCACACATGTCT
1 AGTGATAGG-GTTCGCACATGTCT
* *
59643146 GGTGATAGGGATTCGCGCATGTCT
1 AGTGATAGGG-TTCGCACATGTCT
*
59643170 AGTGATACGGTTCG
1 AGTGATAGGGTTCG
59643184 TAGTTATCAC
Statistics
Matches: 134, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
22 16 0.12
23 55 0.41
24 63 0.47
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (23 bp):
AGTGATAGGGTTCGCACATGTCT
Found at i:59645918 original size:36 final size:36
Alignment explanation
Indices: 59645844--59645918 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
59645834 CGTATCTAAT
* * * *
59645844 TCTATATTTGTAATTGAATTTAATTTTGTATATTCA
1 TCTATATTTGCAATTGAATCTAATTCTGTATATGCA
* * *
59645880 TCTATATTTGCAATTGCATCTGATTCTGTATCTGCA
1 TCTATATTTGCAATTGAATCTAATTCTGTATATGCA
59645916 TCT
1 TCT
59645919 GTAACTAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (36 bp):
TCTATATTTGCAATTGAATCTAATTCTGTATATGCA
Found at i:59646758 original size:25 final size:24
Alignment explanation
Indices: 59646713--59646759 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
59646703 TTTCTTCTTC
* *
59646713 TTTCTTTTTTTTTATTTTTTTATT
1 TTTCCTTTTCTTTATTTTTTTATT
*
59646737 TTTCCTTTTCTTTCTTTGTTTTA
1 TTTCCTTTTCTTTATTT-TTTTA
59646760 CTTCTTTGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.06, C:0.11, G:0.02, T:0.81
Consensus pattern (24 bp):
TTTCCTTTTCTTTATTTTTTTATT
Found at i:59651281 original size:19 final size:18
Alignment explanation
Indices: 59651244--59651291 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
59651234 TGCTATGTTA
59651244 CAAAATACAAAAATATTTT
1 CAAAATA-AAAAATATTTT
*
59651263 CAAAATAAAAATATTTTTT
1 CAAAATAAAAA-ATATTTT
*
59651282 CAATATAAAA
1 CAAAATAAAA
59651292 TTCTCATGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (18 bp):
CAAAATAAAAAATATTTT
Found at i:59663101 original size:21 final size:21
Alignment explanation
Indices: 59663058--59663106 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
59663048 AATAGAAAAT
*
59663058 ATATCAAAAAATTAAAAAGTAC
1 ATAT-AAAAAATAAAAAAGTAC
*
59663080 A-ATAAAAAATAAAAAATTTAC
1 ATATAAAAAATAAAAAA-GTAC
59663101 ATATAA
1 ATATAA
59663107 TTTGAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 12 0.52
21 6 0.26
22 5 0.22
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (21 bp):
ATATAAAAAATAAAAAAGTAC
Found at i:59664030 original size:22 final size:22
Alignment explanation
Indices: 59664000--59664043 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
59663990 AACACTCTTT
*
59664000 TAAATAATAAATAAGAAATAAG
1 TAAACAATAAATAAGAAATAAG
59664022 TAAACAATAAATAAGAAATAAG
1 TAAACAATAAATAAGAAATAAG
59664044 GGGCTCCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (22 bp):
TAAACAATAAATAAGAAATAAG
Found at i:59664041 original size:11 final size:11
Alignment explanation
Indices: 59664005--59664042 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
59663995 TCTTTTAAAT
59664005 AATAAATAAGA
1 AATAAATAAGA
*
59664016 AATAAGTAA-A
1 AATAAATAAGA
59664026 CAATAAATAAGA
1 -AATAAATAAGA
59664038 AATAA
1 AATAA
59664043 GGGGCTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 1 0.04
11 21 0.91
12 1 0.04
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (11 bp):
AATAAATAAGA
Found at i:59664043 original size:7 final size:7
Alignment explanation
Indices: 59664001--59664043 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
59663991 ACACTCTTTT
*
59664001 AAATAAT
1 AAATAAG
59664008 AAATAAG
1 AAATAAG
59664015 AAATAAG
1 AAATAAG
* *
59664022 TAAACAAT
1 -AAATAAG
59664030 AAATAAG
1 AAATAAG
59664037 AAATAAG
1 AAATAAG
59664044 GGGCTCCCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (7 bp):
AAATAAG
Found at i:59665588 original size:14 final size:15
Alignment explanation
Indices: 59665569--59665603 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
59665559 TTTAATTTTC
59665569 AAAATTTCAAAAA-A
1 AAAATTTCAAAAATA
*
59665583 AAAATTTTAAAAATA
1 AAAATTTCAAAAATA
59665598 AAAATT
1 AAAATT
59665604 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATTTCAAAAATA
Found at i:59665633 original size:30 final size:31
Alignment explanation
Indices: 59665599--59665700 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
59665589 TTAAAAATAA
*
59665599 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
59665629 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCTCT
* *
59665659 AAATTTCACTTAGACCCCTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCCTAAACTTTTC-TCT
59665689 AAATTTCATTTT
1 AAATTTCATTTT
59665701 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAACTTTTCTCT
Found at i:59666096 original size:3 final size:3
Alignment explanation
Indices: 59666088--59666159 Score: 62
Period size: 3 Copynumber: 24.0 Consensus size: 3
59666078 GCTAGACTTT
*
59666088 GAA GAA GAA GAA GGAA GAA GAA GGAA GAA GAA -AA GAG GAA GAA GAAA
1 GAA GAA GAA GAA -GAA GAA GAA -GAA GAA GAA GAA GAA GAA GAA G-AA
*
59666135 GAAA GAA -AA -AA GAA AAA GAA -AA GAA
1 G-AA GAA GAA GAA GAA GAA GAA GAA GAA
59666160 ATAATAAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
2 8 0.14
3 38 0.64
4 13 0.22
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:59666106 original size:10 final size:10
Alignment explanation
Indices: 59666091--59666119 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
59666081 AGACTTTGAA
59666091 GAAGAAGAAG
1 GAAGAAGAAG
59666101 GAAGAAGAAG
1 GAAGAAGAAG
59666111 GAAGAAGAA
1 GAAGAAGAA
59666120 AAGAGGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAG
Found at i:59666106 original size:13 final size:13
Alignment explanation
Indices: 59666088--59666133 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
59666078 GCTAGACTTT
59666088 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
59666101 GAAGAAGAAGGAA-
1 GAAGAAGAA-GAAG
59666114 GAAGAA-AAG-AG
1 GAAGAAGAAGAAG
59666125 GAAGAAGAA
1 GAAGAAGAA
59666134 AGAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 7 0.23
12 4 0.13
13 15 0.50
14 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:59666258 original size:15 final size:14
Alignment explanation
Indices: 59666236--59666275 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
59666226 GCAGCCCAAG
59666236 AAAAAAACAACAAAA
1 AAAAAAACAA-AAAA
*
59666251 ACAAAAACAAAAAA
1 AAAAAAACAAAAAA
59666265 AAAAGAAACAA
1 AAAA-AAACAA
59666276 GCCCAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAAA
Found at i:59666273 original size:21 final size:21
Alignment explanation
Indices: 59666249--59666292 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
59666239 AAAACAACAA
59666249 AAACAAAAACAAAAAAAAAAG
1 AAACAAAAACAAAAAAAAAAG
***
59666270 AAACAAGCCCAAAAAAAAAAG
1 AAACAAAAACAAAAAAAAAAG
59666291 AA
1 AA
59666293 GAGCAGGCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.80, C:0.14, G:0.07, T:0.00
Consensus pattern (21 bp):
AAACAAAAACAAAAAAAAAAG
Found at i:59666441 original size:11 final size:11
Alignment explanation
Indices: 59666425--59666491 Score: 71
Period size: 11 Copynumber: 6.0 Consensus size: 11
59666415 GGCCCAGCAG
59666425 AGAAAAAAAAA
1 AGAAAAAAAAA
*
59666436 AGAAAAGAAAA
1 AGAAAAAAAAA
* *
59666447 AGAAGAAAAAG
1 AGAAAAAAAAA
**
59666458 AGAAGGAAAAA
1 AGAAAAAAAAA
*
59666469 AGAAGGAAAAAA
1 AGAA-AAAAAAA
59666481 AGAAAAAAAAA
1 AGAAAAAAAAA
59666492 GAGGTTCAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
11 37 0.79
12 10 0.21
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:59666455 original size:22 final size:22
Alignment explanation
Indices: 59666425--59666493 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
59666415 GGCCCAGCAG
*
59666425 AGAAAAAAAAAAGAAAAGAAAA
1 AGAAGAAAAAAAGAAAAGAAAA
* *
59666447 AGAAGAAAAAGAG-AAGGAAAAA
1 AGAAGAAAAAAAGAAAAG-AAAA
59666469 AGAAGGAAAAAAAGAAAA-AAAA
1 AGAA-GAAAAAAAGAAAAGAAAA
59666491 AGA
1 AGA
59666494 GGTTCAATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 3 0.08
22 26 0.67
23 8 0.21
24 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (22 bp):
AGAAGAAAAAAAGAAAAGAAAA
Found at i:59666861 original size:18 final size:18
Alignment explanation
Indices: 59666818--59667334 Score: 243
Period size: 17 Copynumber: 29.8 Consensus size: 18
59666808 CTATAATCCC
*
59666818 CGTGCTTTT-AAAAATTCT
1 CGTG-TTTTCAAAAATTTT
* *
59666836 CATG-TTTCAAAAATCTT
1 CGTGTTTTCAAAAATTTT
*
59666853 CGTGTTTTC-AAAATTCT
1 CGTGTTTTCAAAAATTTT
*
59666870 AGTG-TTTCAAAAATTTT
1 CGTGTTTTCAAAAATTTT
*
59666887 CTTGTTTTCAGAAAAAATTTT
1 CGTGTTTTC---AAAAATTTT
* *
59666908 CGTGTTTT-ATAAATTTC
1 CGTGTTTTCAAAAATTTT
* ***
59666925 CGTATTTTCAAAAA-AAC
1 CGTGTTTTCAAAAATTTT
*
59666942 CATGTCTTTCAAAAATTTT
1 CGTGT-TTTCAAAAATTTT
* **
59666961 CGTGTTTTCAAAAAAAATGA
1 CGTGTTTTC--AAAAATTTT
*
59666981 CAGTG-TTTCAAAAATTTC
1 C-GTGTTTTCAAAAATTTT
*** *
59666999 CGTGTTAAAAAAAAATCTT
1 CGTGTT-TTCAAAAATTTT
*
59667018 CGTATTTTCAAAAAATTTT
1 CGTGTTTTC-AAAAATTTT
*
59667037 CGTG-TTTCAAAAATCTT
1 CGTGTTTTCAAAAATTTT
59667054 CGTGTTTTCAAAAA-TTT
1 CGTGTTTTCAAAAATTTT
* *
59667071 CG-GTGTTTCACAGATTTT
1 CGTGT-TTTCAAAAATTTT
* *
59667089 CGTGTTTTCAAAAA-CTC
1 CGTGTTTTCAAAAATTTT
* * ***
59667106 CGGTGATTTAAAAAAAAAT
1 C-GTGTTTTCAAAAATTTT
* *
59667125 CGT-TTTCTAAAAAATTTC
1 CGTGTTT-TCAAAAATTTT
59667143 CGTG-TTTCAAAAATTTT
1 CGTGTTTTCAAAAATTTT
59667160 CGTGTTTT-AAAAATTTT
1 CGTGTTTTCAAAAATTTT
*
59667177 CGTGTTTT--AAAATTCT
1 CGTGTTTTCAAAAATTTT
*
59667193 CGTATTTT---AAA-TTT
1 CGTGTTTTCAAAAATTTT
*** **
59667207 --T-TTAAGAAAAAAATT
1 CGTGTTTTCAAAAATTTT
* *
59667222 -GTG-TTTCAAAAAATGT
1 CGTGTTTTCAAAAATTTT
* *
59667238 CTTGTTTT-AAAAATTCT
1 CGTGTTTTCAAAAATTTT
* *
59667255 CGTG-TTTCAAAAAATGT
1 CGTGTTTTCAAAAATTTT
59667272 CGTGTTTT-AAAAATTTT
1 CGTGTTTTCAAAAATTTT
**
59667289 CGTG-TTTCTGAAATTTT
1 CGTGTTTTCAAAAATTTT
*
59667306 CGTG-TTT-AAAAATTCT
1 CGTGTTTTCAAAAATTTT
59667322 CGTGTTTT-AAAAA
1 CGTGTTTTCAAAAA
59667335 AAACTTTCAT
Statistics
Matches: 378, Mismatches: 84, Indels: 75
0.70 0.16 0.14
Matches are distributed among these distances:
11 2 0.01
12 1 0.00
14 5 0.01
15 5 0.01
16 48 0.13
17 162 0.43
18 95 0.25
19 30 0.08
20 11 0.03
21 19 0.05
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.43
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTT
Found at i:59666879 original size:16 final size:16
Alignment explanation
Indices: 59666828--59666881 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
59666818 CGTGCTTTTA
59666828 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
59666844 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
59666862 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
59666878 AAAA
1 AAAA
59666882 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:59666987 original size:74 final size:74
Alignment explanation
Indices: 59666874--59667049 Score: 187
Period size: 74 Copynumber: 2.4 Consensus size: 74
59666864 AATTCTAGTG
* * ** * * * **
59666874 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAAATGACGTGTTTCAAAAATTTCCGT-GTTAAAAAAA
59666939 AACCAT-GT-C
64 AACCATCGTAC
59666948 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACAGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGAC-GTGTTTCAAAAATTTCCGTGTTAAAAAAAA
* * *
59667013 ATCTTCGTAT
65 ACCATCGTAC
59667023 TTTCAAAAAATTTTCGTG-TTTCAAAAA
1 TTTC-AAAAATTTTCGTGTTTTCAAAAA
59667050 TCTTCGTGTT
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
73 19 0.22
74 41 0.48
75 13 0.15
76 13 0.15
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (74 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACGTGTTTCAAAAATTTCCGTGTTAAAAAAAAA
CCATCGTAC
Found at i:59667250 original size:95 final size:95
Alignment explanation
Indices: 59667112--59667283 Score: 240
Period size: 95 Copynumber: 1.8 Consensus size: 95
59667102 ACTCCGGTGA
* * * * *
59667112 TTTAAAAAAAAATCGTTTTCTAAAAAATTTCCGTGTTTCAAAAATTTTCGTGTTTTAAAAATTTT
1 TTTAAAAAAAAATCGTTTTCTAAAAAATGTCCGTGTTTCAAAAATTCTCGTGTTTCAAAAAATGT
59667177 CGTGTTTTAAAATTCTCGTATTTTAAATTT
66 CGTGTTTTAAAATTCTCGTATTTTAAATTT
* * *
59667207 TTTAAGAAAAAAATTGTGTTTC-AAAAAATGT-CTTGTTTTAAAAATTCTCGTGTTTCAAAAAAT
1 TTTAA-AAAAAAATCGT-TTTCTAAAAAATGTCCGTGTTTCAAAAATTCTCGTGTTTCAAAAAAT
59667270 GTCGTGTTTTAAAA
64 GTCGTGTTTTAAAA
59667284 ATTTTCGTGT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
95 45 0.67
96 18 0.27
97 4 0.06
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (95 bp):
TTTAAAAAAAAATCGTTTTCTAAAAAATGTCCGTGTTTCAAAAATTCTCGTGTTTCAAAAAATGT
CGTGTTTTAAAATTCTCGTATTTTAAATTT
Found at i:59667371 original size:16 final size:17
Alignment explanation
Indices: 59667352--59667388 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
59667342 CATTTTTAAA
59667352 AAAAATT-TCGTG-CTT
1 AAAAATTGTCGTGTCTT
*
59667367 CAAAATTGTCGTGTCTT
1 AAAAATTGTCGTGTCTT
59667384 AAAAA
1 AAAAA
59667389 AAGTTTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 6 0.33
16 5 0.28
17 7 0.39
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (17 bp):
AAAAATTGTCGTGTCTT
Found at i:59667371 original size:19 final size:19
Alignment explanation
Indices: 59667313--59667363 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
59667303 TTTCGTGTTT
59667313 AAAAATTCTCGTGTTTTAAA
1 AAAAATT-TCGTGTTTTAAA
*
59667333 AAAAACTTTCAT-TTTTAAA
1 AAAAA-TTTCGTGTTTTAAA
59667352 AAAAATTTCGTG
1 AAAAATTTCGTG
59667364 CTTCAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.19
19 12 0.44
20 8 0.30
21 2 0.07
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (19 bp):
AAAAATTTCGTGTTTTAAA
Found at i:59682472 original size:29 final size:28
Alignment explanation
Indices: 59682430--59682484 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
59682420 TTAATATAAT
* **
59682430 TATTGATATAATATTTTTTATATTTAAA
1 TATTGATACAATATTAATTATATTTAAA
59682458 TATTGCATACAATATTAATTATATTTA
1 TATTG-ATACAATATTAATTATATTTA
59682485 TCTAATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (28 bp):
TATTGATACAATATTAATTATATTTAAA
Found at i:59683714 original size:20 final size:21
Alignment explanation
Indices: 59683686--59683727 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
59683676 CAAAAGTAAA
*
59683686 TAAATAATTTTATAA-ATTTT
1 TAAAGAATTTTATAATATTTT
*
59683706 TAAAGAATTTTTTAATATTTT
1 TAAAGAATTTTATAATATTTT
59683727 T
1 T
59683728 TTTAGAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TAAAGAATTTTATAATATTTT
Found at i:59688366 original size:98 final size:98
Alignment explanation
Indices: 59688195--59688391 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
59688185 GTGCAATAAA
*
59688195 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
59688260 CCTCTAAAATCCCAAACTCAAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAAAATATTTCCTTT
59688293 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* **
59688358 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAAAATATTTCCTTT
59688391 A
1 A
59688392 TTATTTTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAAAATATTTCCTTT
Found at i:59688940 original size:21 final size:21
Alignment explanation
Indices: 59688916--59688971 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
59688906 GAGAATAAAG
*
59688916 AAAAATATATATAGAAATTAT
1 AAAAATATATATAGAAAGTAT
***
59688937 AAAAATATGGGTAGAAAGTAT
1 AAAAATATATATAGAAAGTAT
*
59688958 AATATATATATATA
1 AA-AAATATATATA
59688972 CGTACATATA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (21 bp):
AAAAATATATATAGAAAGTAT
Found at i:59689059 original size:20 final size:20
Alignment explanation
Indices: 59689031--59689098 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
59689021 ATATATGTGT
* *
59689031 ATATATATATAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
59689051 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
* *
59689071 ATATATACACGAAAGTATAAT
1 ATATATATA-GAAAGTATAAA
59689092 ATATATA
1 ATATATA
59689099 CACGTACATA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 23 0.56
21 18 0.44
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.35
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:59689112 original size:23 final size:21
Alignment explanation
Indices: 59689060--59689102 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
59689050 AATATGTATA
59689060 GAAAGTATAATATATATACAC
1 GAAAGTATAATATATATACAC
59689081 GAAAGTATAATATATATACAC
1 GAAAGTATAATATATATACAC
59689102 G
1 G
59689103 TACATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (21 bp):
GAAAGTATAATATATATACAC
Found at i:59694031 original size:23 final size:23
Alignment explanation
Indices: 59694001--59694178 Score: 247
Period size: 23 Copynumber: 7.8 Consensus size: 23
59693991 CTACCCTGTT
*
59694001 TTGGACAGCTTTTATACATCAAA
1 TTGGACAGCATTTATACATCAAA
*
59694024 TTGGACAGCATTTATACTTCAAA
1 TTGGACAGCATTTATACATCAAA
*
59694047 TTGGGCAGCATTTATACATCAAA
1 TTGGACAGCATTTATACATCAAA
*
59694070 TTAGG-CAGCA--TATACACCAAA
1 TT-GGACAGCATTTATACATCAAA
59694091 TTGGACAAG-ATTTATACATCAAA
1 TTGGAC-AGCATTTATACATCAAA
*
59694114 TTAGACAGCATTTATACATCAAA
1 TTGGACAGCATTTATACATCAAA
* *
59694137 TTGGACAACATTTATACATTAAA
1 TTGGACAGCATTTATACATCAAA
59694160 TTGGACAGCATTTATACAT
1 TTGGACAGCATTTATACAT
59694179 GTAAAAACAA
Statistics
Matches: 138, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.01
21 14 0.10
22 4 0.03
23 116 0.84
24 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (23 bp):
TTGGACAGCATTTATACATCAAA
Found at i:59694961 original size:41 final size:41
Alignment explanation
Indices: 59694871--59695030 Score: 137
Period size: 41 Copynumber: 3.9 Consensus size: 41
59694861 AATACTCAAT
* ** *
59694871 ATTTCGCACAGTAATTGCCATCGCATAGCCGAAACTATTATA
1 ATTTCGCACAGTAAGTGCC-TTACATAGCCGAAGCTATTATA
* *
59694913 ATCTCGCACAGTAAGTGCCTTACATAGCTGAAGCTATCT-TA
1 ATTTCGCACAGTAAGTGCCTTACATAGCCGAAGCTAT-TATA
* * * * **
59694954 GTTTCGCACACTAAGTGCCATATATAGCCGAAGCTATTCCCA
1 ATTTCGCACAGTAAGTGCCTTACATAGCCGAAGCTATT-ATA
* * *
59694996 A--TCGCACACTAAGTGCCATAAATAGCCGAAGCTAT
1 ATTTCGCACAGTAAGTGCCTTACATAGCCGAAGCTAT
59695031 CTCGAATCAC
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 34 0.34
41 47 0.47
42 19 0.19
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (41 bp):
ATTTCGCACAGTAAGTGCCTTACATAGCCGAAGCTATTATA
Found at i:59695047 original size:40 final size:40
Alignment explanation
Indices: 59694960--59695051 Score: 132
Period size: 40 Copynumber: 2.3 Consensus size: 40
59694950 CTTAGTTTCG
* *
59694960 CACACTAAGTGCCATATATAGCCGAAGCTATTCCCAATCG
1 CACACTAAGTGCCATAAATAGCCGAAGCTATTCCCAATCA
*
59695000 CACACTAAGTGCCATAAATAGCCGAAGCTA-TCTCGAATCA
1 CACACTAAGTGCCATAAATAGCCGAAGCTATTC-CCAATCA
*
59695040 CATACTAAGTGC
1 CACACTAAGTGC
59695052 TAAACATAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
39 2 0.04
40 45 0.96
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATAAATAGCCGAAGCTATTCCCAATCA
Found at i:59698284 original size:19 final size:19
Alignment explanation
Indices: 59698260--59698372 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
59698250 TAATTTTGAG
59698260 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
59698279 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
59698298 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
59698319 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
**
59698338 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
59698357 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
59698373 ATATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:59698305 original size:40 final size:40
Alignment explanation
Indices: 59698261--59698367 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
59698251 AATTTTGAGG
*
59698261 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
**
59698301 ATATGCAATCTTAGATATGATATGCAATCTTAGAGATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
59698341 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
59698368 TTAGAATATA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 23 0.36
40 41 0.64
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
Found at i:59699779 original size:98 final size:98
Alignment explanation
Indices: 59699660--59699856 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
59699650 TTAAAAATAA
* * *
59699660 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCTTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
59699725 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
59699758 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
59699823 TTAAATCTTGGATGAGTGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
59699856 T
1 T
59699857 TTTATTGTAC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
Found at i:59704561 original size:15 final size:13
Alignment explanation
Indices: 59704539--59704594 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 13
59704529 AAAATATTTC
59704539 AAAAAAAAGGAGAA
1 AAAAAAAAGGA-AA
59704553 AAAAGAAAAGGAAA
1 AAAA-AAAAGGAAA
59704567 AAGGAAAAAA-GAAA
1 AA--AAAAAAGGAAA
* *
59704581 AAGAAAAAGTAAA
1 AAAAAAAAGGAAA
59704594 A
1 A
59704595 GGAGAGGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
12 5 0.14
13 4 0.11
14 14 0.39
15 11 0.31
16 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (13 bp):
AAAAAAAAGGAAA
Found at i:59704575 original size:20 final size:20
Alignment explanation
Indices: 59704550--59704594 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
59704540 AAAAAAAGGA
*
59704550 GAAAAAAGAAAAGGAAAAAG
1 GAAAAAAGAAAAAGAAAAAG
59704570 GAAAAAAGAAAAAGAAAAAG
1 GAAAAAAGAAAAAGAAAAAG
*
59704590 TAAAA
1 GAAAA
59704595 GGAGAGGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (20 bp):
GAAAAAAGAAAAAGAAAAAG
Found at i:59704594 original size:7 final size:6
Alignment explanation
Indices: 59704552--59704595 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
59704542 AAAAAGGAGA
* *
59704552 AAAAAG AAAAGG AAAAAGG AAAAAAG AAAAAG AAAAAG TAAAAG
1 AAAAAG AAAAAG AAAAA-G -AAAAAG AAAAAG AAAAAG AAAAAG
59704596 GAGAGGACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
6 26 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:59705861 original size:44 final size:44
Alignment explanation
Indices: 59705812--59706260 Score: 174
Period size: 44 Copynumber: 10.2 Consensus size: 44
59705802 AAAATTGTAG
* * *
59705812 ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
* * * * *
59705856 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAAATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACCGCGA
* * * * * ** *
59705899 AGCCTTGTCTCCCTAAGCAGCAGTGGAGAAGGTTGAAGATTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
* *
59705943 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
* * * *
59705988 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACCGCGA
* * * * * * * ** *
59706031 AGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAAATTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
* *
59706075 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
* * * * *
59706120 ATCTTATATTTCC-AAG-A-TAGTGGAAAGCAGATTTAAG-CCACCA
1 ATCTTAT-CTCCCTAAGCAGTAGTGG--AGCAGATTGAAGACCGCGA
* * * * * * * ** *
59706163 AGTCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAAATTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
* * *
59706207 GATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGA-CGACAA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCG-CGA
59706252 ATCTTATCT
1 ATCTTATCT
59706261 TTCCAAGATA
Statistics
Matches: 283, Mismatches: 91, Indels: 62
0.65 0.21 0.14
Matches are distributed among these distances:
42 14 0.05
43 29 0.10
44 209 0.74
45 22 0.08
46 9 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCGCGA
Found at i:59706042 original size:132 final size:131
Alignment explanation
Indices: 59705800--59706414 Score: 993
Period size: 132 Copynumber: 4.7 Consensus size: 131
59705790 AACAGATCAG
*
59705800 TGAAAATTGTAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-GCGAATCTTATCT
* *
59705865 TTCCAAGATAGTGGGAAGCAAATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGTGGAGAAG
65 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAG
59705930 GT
130 GT
*
59705932 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-GCGAATCTTATCT
59705997 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAG
65 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAG
59706062 GT
130 GT
*
59706064 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATAT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-GCGAATCTTATCT
* * *
59706129 TTCCAAGATAGTGGAAAGCAGATTTAAGCCACCAAGTCTTGTCTCCCTGAGCAGCAGCGGAGAAG
65 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAG
59706194 GT
130 GT
* *
59706196 TGAAAATTGTAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCT
1 TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACG-CGAATCTTATCT
* * * * * *
59706261 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGTCTTGTTTCACTGAGCAGGAGCGGAGTAG
65 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAG
59706326 GT
130 GT
* *
59706328 T-AAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-C-AAGACGACAAATCATATC
1 TGAAA-ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACG-CGAATCTTATC
59706390 TTTCCAAGATAGTGGGAAGCAGATT
64 TTTCCAAGATAGTGGGAAGCAGATT
59706415 AAAGTCGACA
Statistics
Matches: 460, Mismatches: 21, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
130 42 0.09
131 5 0.01
132 413 0.90
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (131 bp):
TGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGCGAATCTTATCTT
TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGG
T
Found at i:59706516 original size:84 final size:85
Alignment explanation
Indices: 59706428--59706633 Score: 231
Period size: 84 Copynumber: 2.4 Consensus size: 85
59706418 GTCGACATCC
* * *
59706428 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCCCTCTGAAGTTACAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAACA-AG-TCTTATCCCTCTAAAGTTACAGAG
* *
59706493 A-GCAGA-TCG-CAT-CTAGTCT
64 AGGCAGACT-GACATGCAAATCT
* * *
59706512 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTTATCCTTCTAAAGTTACAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AAACAAGTCTTATCCCTCTAAAGTTACAGAG
*
59706577 AGGCAGACTGAAGATGGCAAATCT
64 AGGCAGACTG-ACAT-GCAAATCT
*
59706601 TATCTTCCTGAAGTTGCAGTGGAGCAGATTAAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
59706634 GCCGATAATC
Statistics
Matches: 103, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
84 52 0.50
85 8 0.08
86 5 0.05
87 3 0.03
89 35 0.34
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAACAAGTCTTATCCCTCTAAAGTTACAGAGAG
GCAGACTGACATGCAAATCT
Found at i:59706663 original size:217 final size:217
Alignment explanation
Indices: 59706407--59707286 Score: 1408
Period size: 217 Copynumber: 4.1 Consensus size: 217
59706397 GATAGTGGGA
* *
59706407 AGCAGATTAAAGTCGA-CATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
*
59706471 TTATCCCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA-
* * * *
59706536 C-AGACTAAGTAAACAAGTCTTATCCTTCTAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATC
130 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGACAAATC
59706600 TTATCTTCCTGAAGTTGCAGTGG
195 TTATCTTCCTGAAGTTGCAGTGG
* ** *
59706623 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAATTACAGATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* * *
59706688 TTATCTCTCTGAAGTTATAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCGGTGCAC
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAC
*
59706753 AAGACTAAGTAAGCAAGTCTTATCTTCCTGAAGTTACAGTGAGGCAGACTGAAGATGACAAATCT
131 AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGACAAATCT
*
59706818 TATCTTCCTAAAGTTGCAGTGG
196 TATCTTCCTGAAGTTGCAGTGG
* *
59706840 AGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATTACAGATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
59706905 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGC-GATGGA
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAG-TGGA
* *
59706969 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTATAGTGAGGCAGACTAAAGATGACAAATC
130 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGACAAATC
*
59707034 TTATCTGCCTGAAGTTGCAGTGG
195 TTATCTTCCTGAAGTTGCAGTGG
*
59707057 AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* * *
59707122 TTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAG
66 TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGA-
* * * * *
59707187 C-AGACTAAGGAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAAACTGAAGATGGCAAGTC
130 CAAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGACAAATC
*
59707251 TTATCTCCCTGAAGTTGCAGTGG
195 TTATCTTCCTGAAGTTGCAGTGG
* *
59707274 AGTAGATTGAAGC
1 AGCAGATTAAAGC
59707287 ACTAATTTCT
Statistics
Matches: 616, Mismatches: 43, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
216 17 0.03
217 597 0.97
218 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (217 bp):
AGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
TTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAC
AAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGAAGATGACAAATCT
TATCTTCCTGAAGTTGCAGTGG
Found at i:59707285 original size:45 final size:44
Alignment explanation
Indices: 59706428--59707285 Score: 378
Period size: 44 Copynumber: 19.8 Consensus size: 44
59706418 GTCGACATCC
* * *
59706428 TATCTCCCTGAAGTTGCAGTGGAGCGGA-TTAA-AATCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCA-AG-TCT
* * * * * *
59706472 TATC-CCTCTGAAGTTACAG-AGAGCAGA-T--CGCATCTAGTCT
1 TATCTCC-CTGAAGTTGCAGTGGAGCAGACTGAAGAAGCAAGTCT
*
59706512 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAGCAAGTCT
* * * * *
59706556 TATC-CTTCTAAAGTTACAGT-GAGGCAGACTGAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGA-AGCAAGTCT
* * * ** * *
59706601 TATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG-ATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCA-AGTCT
* * * **
59706645 TATCTCCCTAAAGTTGCAGTGGAGCA-AATTAA-AATTACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCA-AG-TCT
* ** * * * * *
59706689 TATCTCTCTGAAGTTATAG-AGAGCAGA-T--CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCAAGTCT
* *
59706729 TATCTCCCTGAAGTTGCGGTGCA-CAAGACT-AAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGC-AGACTGAAG-AAGCAAGTCT
* * * *
59706773 TATCTTCCTGAAGTTACAGT-GAGGCAGACTGAAGATGACAAATCT
1 TATCTCCCTGAAGTTGCAGTGGA-GCAGACTGAAGAAG-CAAGTCT
* * * * ** *
59706818 TATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGACAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAG-CAAGTCT
* * **
59706862 TATCTCCCTGAAGTTGCAGTGGAGCGGA-TTAA-AATTACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCA-AG-TCT
* * * * * * *
59706906 TATCTCTCTGAAGTTACAG-AGAGCAGA-T--CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCAAGTCT
59706946 TATCTCCCTGAAGTTGC-GATGGA-CAAGACT-AAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAG-TGGAGC-AGACTGAAG-AAGCAAGTCT
** * * *
59706990 TATC-CTCCTGAAGTTATAGT-GAGGCAGACTAAAGATGACAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAG-CAAGTCT
* * * ** * *
59707035 TATCTGCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG-ATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCA-AGTCT
* * * *
59707079 TATCTCCCTGAAGTTGCAGTAGAGCGGA-TTAA-AATCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCA-AG-TCT
* * * * * *
59707123 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CA-CATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCAAGTCT
*
59707163 TATCTCCTTGAAGTTGCAGTGGAGCAGACT-AAGGAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-GAAGCAAGTCT
* *
59707207 TATC-CTCCTGAAGTTGCAGT-GAGGCAAACTGAAGATGGCAAGTCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGA-AGCAAGTCT
* *
59707252 TATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
59707286 CACTAATTTC
Statistics
Matches: 623, Mismatches: 132, Indels: 117
0.71 0.15 0.13
Matches are distributed among these distances:
39 1 0.00
40 76 0.12
41 34 0.05
42 17 0.03
43 59 0.09
44 278 0.45
45 149 0.24
46 9 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAGCAAGTCT
Found at i:59707512 original size:19 final size:19
Alignment explanation
Indices: 59707488--59707600 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
59707478 TAATTTTGAG
59707488 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
59707507 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
59707526 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
59707547 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
**
59707566 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
59707585 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
59707601 ATATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:59707533 original size:40 final size:40
Alignment explanation
Indices: 59707489--59707595 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
59707479 AATTTTGAGG
*
59707489 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
**
59707529 ATATGCAATCTTAGATATGATATGCAATCTTAGAGATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
59707569 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
59707596 TTAGAATATA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 23 0.36
40 41 0.64
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGAGATGAT
Found at i:59708970 original size:98 final size:98
Alignment explanation
Indices: 59708849--59709045 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
59708839 TTAAAAATAA
* *
59708849 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
59708914 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
59708947 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
59709012 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
59709045 T
1 T
59709046 TTTATTGTAC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:59717577 original size:18 final size:19
Alignment explanation
Indices: 59717536--59717578 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
59717526 ATAATAATAT
*
59717536 ATATATTTTAATTTTAGGAC
1 ATATATTTTAATTTTA-GAA
*
59717556 ATATATTTTATTTTTA-AA
1 ATATATTTTAATTTTAGAA
59717574 ATATA
1 ATATA
59717579 ATTATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
20 15 0.71
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (19 bp):
ATATATTTTAATTTTAGAA
Found at i:59722622 original size:38 final size:38
Alignment explanation
Indices: 59722580--59722656 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
59722570 AAAAAAATAT
59722580 TTTTAAACAGTTACGATTTGACAA-AATTAAAATCTAGC
1 TTTTAAACAGTTACGATTTGA-AAGAATTAAAATCTAGC
* *
59722618 TTTTAAACGGTTACGATTTGAAAGAATTAGAATCTAGC
1 TTTTAAACAGTTACGATTTGAAAGAATTAAAATCTAGC
59722656 T
1 T
59722657 ATTGAGATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 2 0.06
38 34 0.94
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (38 bp):
TTTTAAACAGTTACGATTTGAAAGAATTAAAATCTAGC
Found at i:59728976 original size:24 final size:24
Alignment explanation
Indices: 59728914--59728965 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
59728904 TTTCTAGAAG
* *
59728914 ATTTAGTATTTATGAGA-ATAATAT
1 ATTTAGCATTTATTA-ACATAATAT
59728938 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATTAACATAATAT
59728962 ATTT
1 ATTT
59728966 GACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAACATAATAT
Found at i:59730147 original size:43 final size:43
Alignment explanation
Indices: 59730083--59730204 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 43
59730073 TTATATAAAA
*
59730083 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGC-TTTACCCAC
1 AAACGCCGCCAAAGAACATGATCTTTAGCGGCGCTTTTA-CCAC
* * * * *
59730126 AAACGCCGCCAATGAATATGATCTTTTGCGGTGCTTTTATCAC
1 AAACGCCGCCAAAGAACATGATCTTTAGCGGCGCTTTTACCAC
* * * *
59730169 AAACGCCGCTAAAAATACA-GTTCTTTAGCGGGGCTT
1 AAACGCCGCCAAAGA-ACATGATCTTTAGCGGCGCTT
59730205 ATGAAAAAGC
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
43 58 0.91
44 6 0.09
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
AAACGCCGCCAAAGAACATGATCTTTAGCGGCGCTTTTACCAC
Found at i:59732240 original size:21 final size:21
Alignment explanation
Indices: 59732216--59732259 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
59732206 AAGTTATATA
59732216 TAAGTT-TATATATAAGTCATG
1 TAAGTTAT-TATATAAGTCATG
* *
59732237 TAAGTTATTATGTAAGTTATG
1 TAAGTTATTATATAAGTCATG
59732258 TA
1 TA
59732260 TTGTGCAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (21 bp):
TAAGTTATTATATAAGTCATG
Found at i:59732297 original size:59 final size:60
Alignment explanation
Indices: 59732203--59732316 Score: 153
Period size: 59 Copynumber: 1.9 Consensus size: 60
59732193 ATGAAAGTTA
* *
59732203 TGCAAGTTATATATAAGTTTATATATAAGTCATGTAAG-TTATTATGTAAGTTATGTATTG
1 TGCAAGTTATATATAAATTTATATATAAGTCATGTAAGTTTA-TATATAAGTTATGTATTG
* *
59732263 TGCAAGTTTATATATAAATTT-TATTTATGT-ATGTAAGTTTATATATAAGTTATG
1 TGCAAG-TTATATATAAATTTATATATAAGTCATGTAAGTTTATATATAAGTTATG
59732317 ATATGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
59 19 0.40
60 16 0.33
61 13 0.27
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (60 bp):
TGCAAGTTATATATAAATTTATATATAAGTCATGTAAGTTTATATATAAGTTATGTATTG
Found at i:59732388 original size:15 final size:15
Alignment explanation
Indices: 59732368--59732397 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
59732358 TGATAAATTT
59732368 TTAAAAAAATATATA
1 TTAAAAAAATATATA
*
59732383 TTAAAAAAGTATATA
1 TTAAAAAAATATATA
59732398 AATATTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
TTAAAAAAATATATA
Found at i:59732437 original size:24 final size:22
Alignment explanation
Indices: 59732399--59732444 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
59732389 AAGTATATAA
*
59732399 ATATTAATAAGTTATGTAAGTTAT
1 ATATTAAAAAGTTA--TAAGTTAT
*
59732423 ATATTAAAAATTTATAAGTTAT
1 ATATTAAAAAGTTATAAGTTAT
59732445 GTAAAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
24 12 0.60
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (22 bp):
ATATTAAAAAGTTATAAGTTAT
Found at i:59734212 original size:237 final size:239
Alignment explanation
Indices: 59733792--59734227 Score: 702
Period size: 237 Copynumber: 1.8 Consensus size: 239
59733782 TGATAGAACC
59733792 CATGCATATCCACATACAAATTTAGGCATTTTAAAACAGTTAAGCAAAAAGGAAAAAAAAATAAG
1 CATGCATATCCACATACAAATTTAGGCATTTTAAAACAGTTAAGCAAAAAGG---AAAAAATAAG
* * *
59733857 AATAACCATCGAAAAAATCCCAAATTTGATAGAAACAAAACCGTAAATGTAGATCGACAATCGAT
63 AATAACCATCGAAAAAATCCCAAATTTGACAGAAACAAAACCCTAAATGTAGATCAACAATCGAT
* *
59733922 AAAAAAAAGGCTTATCTGGGATACAAATTTTCCAGCTTTGAATGCTCGATTCAACCCTTGCTTCG
128 AAAAAAAAGGCTTACCTGGGATACAAATTTTCCAGCTTTGAATGATCGATTCAACCCTTGCTTCG
59733987 GTTCAGTTGATTTCTGAGTTCTCCTATGTTTCTTTTTCTTTGTATTT
193 GTTCAGTTGATTTCTGAGTTCTCCTATGTTTCTTTTTCTTTGTATTT
*
59734034 CATGCATATCCACATACAAATTTAGGCATTTTAAAACAGTTAAGTAAAAAGG-AAAAA-AAGAAT
1 CATGCATATCCACATACAAATTTAGGCATTTTAAAACAGTTAAGCAAAAAGGAAAAAATAAGAAT
*
59734097 AACGATCGAAAAAAATCCCAAATTTGACAGAAACAAAACCCTAAATGTAGATCAACAATCGAT-A
66 AACCATCG-AAAAAATCCCAAATTTGACAGAAACAAAACCCTAAATGTAGATCAACAATCGATAA
* *
59734161 GAAAAAGGCTTACCTGGGATACAAA-TTTCGCAGCTTTG-GTAGATCGATTCAACCCTTGCTTCG
130 AAAAAAGGCTTACCTGGGATACAAATTTTC-CAGCTTTGAAT-GATCGATTCAACCCTTGCTTCG
59734224 GTTC
193 GTTC
59734228 TGAGTTCTCC
Statistics
Matches: 182, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
236 5 0.03
237 70 0.38
238 56 0.31
242 51 0.28
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.28
Consensus pattern (239 bp):
CATGCATATCCACATACAAATTTAGGCATTTTAAAACAGTTAAGCAAAAAGGAAAAAATAAGAAT
AACCATCGAAAAAATCCCAAATTTGACAGAAACAAAACCCTAAATGTAGATCAACAATCGATAAA
AAAAAGGCTTACCTGGGATACAAATTTTCCAGCTTTGAATGATCGATTCAACCCTTGCTTCGGTT
CAGTTGATTTCTGAGTTCTCCTATGTTTCTTTTTCTTTGTATTT
Found at i:59734951 original size:29 final size:27
Alignment explanation
Indices: 59734896--59734969 Score: 71
Period size: 29 Copynumber: 2.7 Consensus size: 27
59734886 ATCTAAACAT
*
59734896 TAAACCCT-AACCTAACCTTGAATCTC
1 TAAACCCTAAACCTAACCTTGAAACTC
59734922 TAAACCCTAAATCACTAACTCTT-AAACTC
1 TAAACCCTAAA-C-CTAAC-CTTGAAACTC
* *
59734951 TAACCCCTAACCCCTAACC
1 TAAACCCTAA-ACCTAACC
59734970 CCAAACCCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
26 8 0.20
27 3 0.08
28 6 0.15
29 20 0.50
30 3 0.08
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.24
Consensus pattern (27 bp):
TAAACCCTAAACCTAACCTTGAAACTC
Found at i:59734962 original size:7 final size:7
Alignment explanation
Indices: 59734950--59734995 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
59734940 CTCTTAAACT
59734950 CTAACCC
1 CTAACCC
59734957 CTAACCC
1 CTAACCC
59734964 CTAACCC
1 CTAACCC
*
59734971 CAAACCC
1 CTAACCC
* *
59734978 TTAACCA
1 CTAACCC
59734985 CTAACCC
1 CTAACCC
59734992 CTAA
1 CTAA
59734996 ACCTTATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.35, C:0.50, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAACCC
Found at i:59735144 original size:146 final size:146
Alignment explanation
Indices: 59734852--59735117 Score: 417
Period size: 146 Copynumber: 1.8 Consensus size: 146
59734842 TATATAAGAA
* * *
59734852 CTTATTTAATATATAAATTAAAAAATACTAATTAATCTAAACATTAAACCCTAACCTAACCTTGA
1 CTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACACTAAACCCTAACCTAACCCTGA
*
59734917 ATCTCTAAACCCTAAATCACTAACTCTTAAACTCTAACCCCTAACCCCTAACCCCAAACCCTTAA
66 ATCTCTAAACCCTAAATCACTAACTCTTAAACCCTAACCCCTAACCCCTAACCCCAAACCCTTAA
59734982 CCACTAACCCCTAAAC
131 CCACTAACCCCTAAAC
*
59734998 CTTATTTAATATATAAATTAAAAAACACTAATTAATTTAAAC-CTAAACCCTAACCTAACCCCTG
1 CTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACACTAAACCCTAACCTAA-CCCTG
* * * ***
59735062 AATCTCTAAACCTTAAATCCCTAACTCTTAACCCCTAATGTCTAACCCCTAACCCC
65 AATCTCTAAACCCTAAATCACTAACTCTTAAACCCTAACCCCTAACCCCTAACCCC
59735118 TAGACCTTAA
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
145 15 0.14
146 93 0.86
ACGTcount: A:0.41, C:0.30, G:0.01, T:0.28
Consensus pattern (146 bp):
CTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACACTAAACCCTAACCTAACCCTGA
ATCTCTAAACCCTAAATCACTAACTCTTAAACCCTAACCCCTAACCCCTAACCCCAAACCCTTAA
CCACTAACCCCTAAAC
Found at i:59735619 original size:41 final size:40
Alignment explanation
Indices: 59735562--59735757 Score: 173
Period size: 41 Copynumber: 4.8 Consensus size: 40
59735552 CGGCACTGAG
* *
59735562 CATTAGCGGCACTTTTTCAAAAATGCCGCTAAAGCCCCAAA
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-CCCCAAA
*
59735603 CATTAGCGGCGCTTTTT-AAAAATCGCCGCTAAA-ACCAAGA
1 CATTAGCGGCGCTTTTTCAAAAA-CGCCGCTAAACCCCAA-A
* * * *
59735643 GCATTAGTGGCGCTTTTTAAAAAACGCCGCTAAAACCCAGAG
1 -CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAACCCCA-AA
* * * * * *
59735685 CATTAGCGACGCTTTTTCAAAACCGCCTCTAAAACACCGAG
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCT-AAACCCCAAA
* * *
59735726 CATTAGCGGCACTTTTT-TAAAACACCGCTAAA
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
59735758 GCCCTAATAG
Statistics
Matches: 128, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
39 7 0.05
40 14 0.11
41 93 0.73
42 13 0.10
43 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAACCCCAAA
Found at i:59735698 original size:82 final size:81
Alignment explanation
Indices: 59735559--59735758 Score: 242
Period size: 82 Copynumber: 2.4 Consensus size: 81
59735549 TCACGGCACT
* * *
59735559 GAGCATTAGCGGCACTTTTTCAAAAATGCCGCTAAAGCCCCAAACATTAGCGGCGCTTTTTAAAA
1 GAGCATTAGCGGCACTTTTT-AAAAACGCCGCTAAAGACCCAAACATTAGCGACGCTTTTTAAAA
*
59735624 ATCGCCGCTAAAAC-CAA
65 ACCGCCGCTAAAACAC-A
* * * *
59735641 GAGCATTAGTGGCGCTTTTTAAAAAACGCCGCTAAA-ACCCAGAGCATTAGCGACGCTTTTTCAA
1 GAGCATTAGCGGCACTTTTT-AAAAACGCCGCTAAAGACCCA-AACATTAGCGACGCTTTTTAAA
* *
59735705 AACCGCCTCTAAAACACC
64 AACCGCCGCTAAAACACA
* *
59735723 GAGCATTAGCGGCACTTTTTTAAAACACCGCTAAAG
1 GAGCATTAGCGGCACTTTTTAAAAACGCCGCTAAAG
59735759 CCCTAATAGG
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
81 17 0.17
82 82 0.82
83 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.23
Consensus pattern (81 bp):
GAGCATTAGCGGCACTTTTTAAAAACGCCGCTAAAGACCCAAACATTAGCGACGCTTTTTAAAAA
CCGCCGCTAAAACACA
Found at i:59739640 original size:31 final size:31
Alignment explanation
Indices: 59739605--59739666 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
59739595 TGGAAAATTA
*
59739605 CAAGAGTAATTGAATTCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
59739636 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
59739667 AAAATTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.34
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:59755880 original size:20 final size:21
Alignment explanation
Indices: 59755848--59755912 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 21
59755838 CTCGAGTATT
*
59755848 AAAAAT-TAGGAGAGAATATC
1 AAAAATATATGAGAGAATATC
*
59755868 AAAAA-GTATGAGA-AAGTATC
1 AAAAATATATGAGAGAA-TATC
*
59755888 AAAAAATATATAAGAGAATATC
1 -AAAAATATATGAGAGAATATC
59755910 AAA
1 AAA
59755913 TATTAATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
19 2 0.05
20 15 0.41
21 8 0.22
22 10 0.27
23 2 0.05
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AAAAATATATGAGAGAATATC
Found at i:59755909 original size:22 final size:21
Alignment explanation
Indices: 59755858--59755912 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
59755848 AAAAATTAGG
* *
59755858 AGAGAATATC-AAAAAGTATG
1 AGAGAATATCAAAAAAATATA
59755878 AGA-AAGTATCAAAAAATATATA
1 AGAGAA-TATCAAAAAA-ATATA
59755900 AGAGAATATCAAA
1 AGAGAATATCAAA
59755913 TATTAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 2 0.07
20 7 0.24
21 5 0.17
22 13 0.45
23 2 0.07
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AGAGAATATCAAAAAAATATA
Found at i:59756003 original size:21 final size:22
Alignment explanation
Indices: 59755974--59756014 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
59755964 ATTATTTGTA
* *
59755974 TATATAAAAA-ATTTTTATTAG
1 TATACAAAAATATTTATATTAG
59755995 TATACAAAAATATTTATATT
1 TATACAAAAATATTTATATT
59756015 TATATTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
TATACAAAAATATTTATATTAG
Found at i:59756004 original size:22 final size:22
Alignment explanation
Indices: 59755965--59756036 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
59755955 ATTTTAAATA
* *
59755965 TTATTTGTATATATAAAAAATTT
1 TTATTAGTATA-AAAAAAAATTT
* *
59755988 TTATTAGTATACAAAAATATTT
1 TTATTAGTATAAAAAAAAATTT
*
59756010 ATATTTA-TATTAAAAAATAAATTT
1 TTA-TTAGTA-TAAAAAA-AAATTT
59756034 TTA
1 TTA
59756037 AATCAAAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
22 12 0.32
23 19 0.50
24 7 0.18
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (22 bp):
TTATTAGTATAAAAAAAAATTT
Found at i:59756018 original size:20 final size:18
Alignment explanation
Indices: 59755951--59756018 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 18
59755941 ATTTTTTATT
* *
59755951 TTTTATTT-TAAATATTA
1 TTTTATTTATAAAAAATA
*
59755968 TTTGTATATATAAAAAAT-
1 TTT-TATTTATAAAAAATA
59755986 TTTTATTAGTATACAAAAATA
1 TTTTATT--TATA-AAAAATA
59756007 TTTATATTTATA
1 TTT-TATTTATA
59756019 TTAAAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
17 6 0.15
18 7 0.17
19 10 0.25
20 10 0.25
21 3 0.08
22 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTATTTATAAAAAATA
Found at i:59756117 original size:19 final size:19
Alignment explanation
Indices: 59756091--59756136 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
59756081 GAGAATACTA
59756091 AAAATTAT-AAGCATAACC
1 AAAATTATAAAGCATAACC
*
59756109 AATAATTATGAAAGCATACCC
1 AA-AATTAT-AAAGCATAACC
59756130 AAAATTA
1 AAAATTA
59756137 GGAAGGAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.08
19 6 0.25
20 5 0.21
21 11 0.46
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (19 bp):
AAAATTATAAAGCATAACC
Found at i:59756495 original size:40 final size:40
Alignment explanation
Indices: 59756451--59756556 Score: 112
Period size: 38 Copynumber: 2.7 Consensus size: 40
59756441 TTATATTTTT
* *
59756451 TTAT-AAAATTAATAAAAATATATTTAAAATGT-TTAAAATG
1 TTATAAAAACTAATAAAAAT-TATTAAAAAT-TATTAAAATG
59756491 TTATAAAAACTAATAAAAATTATTAAAAATTATTAAAA--
1 TTATAAAAACTAATAAAAATTATTAAAAATTATTAAAATG
* * * *
59756529 TCATAAAAAATTATAACAATTATTAAAA
1 TTATAAAAACTAATAAAAATTATTAAAA
59756557 TTTAAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
38 24 0.41
39 1 0.02
40 19 0.33
41 14 0.24
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (40 bp):
TTATAAAAACTAATAAAAATTATTAAAAATTATTAAAATG
Found at i:59756513 original size:19 final size:19
Alignment explanation
Indices: 59756455--59756564 Score: 82
Period size: 19 Copynumber: 5.7 Consensus size: 19
59756445 ATTTTTTTAT
*
59756455 AAAATTAATAAAAATATATTT
1 AAAATT-ATAAAAAT-TATTA
* *
59756476 AAAATGTTTAAAATGTTA-TA
1 AAAAT-TATAAAA-ATTATTA
*
59756496 AAAACTAATAAAAATTATTA
1 AAAA-TTATAAAAATTATTA
* * *
59756516 AAAATTATTAAAATCATAA
1 AAAATTATAAAAATTATTA
*
59756535 AAAATTATAACAATTATT-
1 AAAATTATAAAAATTATTA
59756553 AAAATT-TAAAAA
1 AAAATTATAAAAA
59756565 AGAAAAAAGA
Statistics
Matches: 70, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
17 5 0.07
18 6 0.09
19 28 0.40
20 16 0.23
21 13 0.19
22 2 0.03
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAATTATAAAAATTATTA
Found at i:59756518 original size:9 final size:9
Alignment explanation
Indices: 59756506--59756558 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 9
59756496 AAAACTAATA
59756506 AAAATTATT
1 AAAATTATT
59756515 AAAAATTATT
1 -AAAATTATT
* *
59756525 AAAATCATAA
1 AAAATTAT-T
59756535 AAAATTA-T
1 AAAATTATT
59756543 AACAATTATT
1 AA-AATTATT
59756553 AAAATT
1 AAAATT
59756559 TAAAAAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
8 2 0.06
9 16 0.44
10 18 0.50
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (9 bp):
AAAATTATT
Found at i:59760305 original size:3 final size:3
Alignment explanation
Indices: 59760297--59760333 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
59760287 GTAGGCTTCT
59760297 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
59760334 TGTAACACCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:59764657 original size:27 final size:27
Alignment explanation
Indices: 59764594--59764868 Score: 294
Period size: 27 Copynumber: 10.2 Consensus size: 27
59764584 GGAGGTCGAT
*
59764594 AAATGATCGAAATACCTCC-A-AGGGTA
1 AAATGACCGAAATACC-CCTATAGGGTA
* *
59764620 AAATGATCGAAATACCCCTATAAGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
59764647 AAATGACCGAAATACGCCC-ATAGGGTA
1 AAATGACCGAAATAC-CCCTATAGGGTA
* *
59764674 GAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* *
59764701 AAATGACCAAAATAGCCCTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* * *
59764728 AAATAACCAAAATACCCC-ATTAGGATA
1 AAATGACCGAAATACCCCTA-TAGGGTA
*
59764755 AAATGACTGAAATA-CCCTCATAGGGTA
1 AAATGACCGAAATACCCCT-ATAGGGTA
* *
59764782 GAATGACCGAAATACCTCC-ATTGGGTA
1 AAATGACCGAAATACC-CCTATAGGGTA
* *
59764809 AAATAACTGAAATACCCCCT-TAGGGTA
1 AAATGACCGAAATA-CCCCTATAGGGTA
* *
59764836 AAATGACCGAAATACCCCCATAAGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
59764863 AAATGA
1 AAATGA
59764869 TTTTTATACC
Statistics
Matches: 210, Mismatches: 27, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.01
26 27 0.13
27 172 0.82
28 7 0.03
29 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTATAGGGTA
Found at i:59765282 original size:28 final size:28
Alignment explanation
Indices: 59765237--59765376 Score: 178
Period size: 28 Copynumber: 5.0 Consensus size: 28
59765227 CACTGCATTG
* * *
59765237 TTACAGTATTGGGATAAGGCCTACACTAA
1 TTACTGTATTGGGCTAAGGCCCACACT-A
59765266 TT-CTGTATTGGGCTAAGGCCCACACTGA
1 TTACTGTATTGGGCTAAGGCCCACACT-A
59765294 TT-CTGTATTGGGCTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* *
59765321 TTACTGTATTGGGCTAA-GCCTACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTA
* *
59765348 TTACTGTAATGGGCCAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
59765376 T
1 T
59765377 ATTGATACTG
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
27 26 0.26
28 71 0.72
29 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTA
Found at i:59765369 original size:55 final size:55
Alignment explanation
Indices: 59765252--59765376 Score: 173
Period size: 55 Copynumber: 2.3 Consensus size: 55
59765242 GTATTGGGAT
* * *
59765252 AAGGCCTACACTAATTCTGTATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCT
1 AAGGCCCACACT-ATTCTGTATTGGGCTAAGGCCCACACTGATTCTGTAATGGGCC
*
59765308 AAGGCCCACACTATTACTGTATTGGGCTAA-GCCTACACTG-TTACTGTAATGGGCC
1 AAGGCCCACACTATT-CTGTATTGGGCTAAGGCCCACACTGATT-CTGTAATGGGCC
59765363 AAGGCCCACACTAT
1 AAGGCCCACACTAT
59765377 ATTGATACTG
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
54 2 0.03
55 36 0.57
56 25 0.40
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (55 bp):
AAGGCCCACACTATTCTGTATTGGGCTAAGGCCCACACTGATTCTGTAATGGGCC
Found at i:59770836 original size:20 final size:20
Alignment explanation
Indices: 59770811--59770849 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
59770801 TCTTTCTGCA
59770811 ATTTCCCCTCATCCTTTCTG
1 ATTTCCCCTCATCCTTTCTG
*
59770831 ATTTCCCCTCGTCCTTTCT
1 ATTTCCCCTCATCCTTTCT
59770850 TCATCTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.08, C:0.41, G:0.05, T:0.46
Consensus pattern (20 bp):
ATTTCCCCTCATCCTTTCTG
Found at i:59772555 original size:17 final size:17
Alignment explanation
Indices: 59772533--59772565 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
59772523 TTATTTTCTA
59772533 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
*
59772550 TATAAGTTTTGTAAAT
1 TATAAGTTTTCTAAAT
59772566 AATTATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:59772611 original size:15 final size:16
Alignment explanation
Indices: 59772574--59772612 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
59772564 ATAATTATTC
*
59772574 TAAATTTATTAGTATA
1 TAAATTTAGTAGTATA
*
59772590 AAAATTTAGTAGTAT-
1 TAAATTTAGTAGTATA
59772605 TAAATTTA
1 TAAATTTA
59772613 TAAGTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (16 bp):
TAAATTTAGTAGTATA
Found at i:59772613 original size:61 final size:61
Alignment explanation
Indices: 59772544--59772693 Score: 178
Period size: 61 Copynumber: 2.5 Consensus size: 61
59772534 ATAAGTTTTC
59772544 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGT-ATAAAAATTTAGT-AGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAAT-AAAATTTA-TAAGTAT
* * * * * *
59772605 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAGATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * * *
59772666 CAATTTTACACGTTTTGTAAATAATTAT
1 TAAATTTATAAGTTTTGTAAATAATTAT
59772694 ATATTTTTTA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
60 1 0.01
61 70 0.96
62 2 0.03
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (61 bp):
TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:59772929 original size:8 final size:7
Alignment explanation
Indices: 59772916--59772961 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
59772906 TAACGTATAT
59772916 ATAATAAC
1 ATAAT-AC
59772924 ATAATA-
1 ATAATAC
*
59772930 A-ATTAC
1 ATAATAC
59772936 ATAATAC
1 ATAATAC
59772943 ATAATAAC
1 ATAAT-AC
59772951 ATAATAC
1 ATAATAC
59772958 ATAA
1 ATAA
59772962 CTTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 3 0.09
6 2 0.06
7 16 0.48
8 12 0.36
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:59772949 original size:95 final size:95
Alignment explanation
Indices: 59772837--59773041 Score: 297
Period size: 95 Copynumber: 2.2 Consensus size: 95
59772827 AATCATTTGC
* *
59772837 TTACTTAATACATAATAACACAATACATAA-TTGGTATATAAGCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACACAATACATAACTT-ATATATAAGCTTGCATAACTTACATAATAAC
59772901 -TTCAATAACGTATATATAATAACATAATAAA
65 TTTC-ATAACGTATATATAATAACATAATAAA
* *
59772932 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGTATAACTTACATAATAACT
1 TTACATAATACATAATAACACAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
* *** *
59772997 TTCATAACTTATATATAATCTGATAATACA
66 TTCATAACGTATATATAATAACATAATAAA
59773027 TTACATAATACATAA
1 TTACATAATACATAA
59773042 CTTATATTAT
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 94 0.95
96 5 0.05
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.35
Consensus pattern (95 bp):
TTACATAATACATAATAACACAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
TTCATAACGTATATATAATAACATAATAAA
Found at i:59772954 original size:15 final size:15
Alignment explanation
Indices: 59772916--59772961 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
59772906 TAACGTATAT
59772916 ATAATAACATAAT--
1 ATAATAACATAATAC
*
59772929 A-AATTACATAATAC
1 ATAATAACATAATAC
59772943 ATAATAACATAATAC
1 ATAATAACATAATAC
59772958 ATAA
1 ATAA
59772962 CTTATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
14 1 0.04
15 16 0.57
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAACATAATAC
Found at i:59772983 original size:21 final size:20
Alignment explanation
Indices: 59772957--59773088 Score: 76
Period size: 21 Copynumber: 6.5 Consensus size: 20
59772947 TAACATAATA
59772957 CATAACTTATATATAAGCTTGT
1 CATAACTTATATATAA-CTT-T
*
59772979 -ATAACTTACATAATAACTTT
1 CATAACTTATAT-ATAACTTT
*
59772999 CATAACTTATATATAA-TCT
1 CATAACTTATATATAACTTT
* * * *
59773018 GATAA-TACATTACATAA--TA
1 CATAACT-TA-TATATAACTTT
*
59773037 CATAACTTATATTATAATCTTG
1 CATAACTTATA-TATAA-CTTT
* *
59773059 CATAACTTACATAATAACTTC
1 CATAACTTATAT-ATAACTTT
59773080 CATAACTTA
1 CATAACTTA
59773089 ATACACCACT
Statistics
Matches: 86, Mismatches: 14, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
18 3 0.03
19 16 0.19
20 12 0.14
21 36 0.42
22 19 0.22
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (20 bp):
CATAACTTATATATAACTTT
Done.