Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 205 of 228
Found at i:59950067 original size:31 final size:28
Alignment explanation
Indices: 59950004--59950059 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
59949994 ATAAAACAAG
59950004 ACATACCTCTCTTGAACAAAGCTAAGTT
1 ACATACCTCTCTTGAACAAAGCTAAGTT
*
59950032 ACATACCTCTCTTGAGCAAAGCTAAGTT
1 ACATACCTCTCTTGAACAAAGCTAAGTT
59950060 GTTACATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
ACATACCTCTCTTGAACAAAGCTAAGTT
Found at i:59956372 original size:30 final size:31
Alignment explanation
Indices: 59956310--59956377 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
59956300 GTATACATTC
* *
59956310 TTATATTCTATATATATACTTTATAATTTGT
1 TTATATTCTATATATATACTATATAATGTGT
59956341 TTATATATCTATATATA-ACTATAT-ATGTGT
1 TTATAT-TCTATATATATACTATATAATGTGT
*
59956371 TTTTATT
1 TTATATT
59956378 TTCATAAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 10 0.30
31 12 0.36
32 10 0.30
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (31 bp):
TTATATTCTATATATATACTATATAATGTGT
Found at i:59958724 original size:3 final size:3
Alignment explanation
Indices: 59958716--59958759 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
59958706 CTACTTCTTA
59958716 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
59958760 CATCATCATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:59960218 original size:135 final size:136
Alignment explanation
Indices: 59959898--59960234 Score: 516
Period size: 138 Copynumber: 2.5 Consensus size: 136
59959888 ATACTAATTT
* * *
59959898 AAAACTAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGT
1 AAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGC
* * *
59959963 ATAAATCAAATTCATATGTTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATA
66 ATAAATCAAATTCATATATTAATCATATTCTTT-C-AAAGAATATTAATTTTCATATCTTTTATA
*
59960028 TTTTTACC
129 TTTTGACC
59960036 AAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGC
1 AAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGC
*
59960101 ATGAATCAAATTCATATATTAATCATATTCTTT-AAAGAATATTAA-TTTCTATATCTTTTATAT
66 ATAAATCAAATTCATATATTAATCATATTCTTTCAAAGAATATTAATTTTC-ATATCTTTTATAT
59960164 TTTGACC
130 TTTGACC
* ** * *
59960171 GAAATTAATTAATATAACCGTTTATATTAATAAATTCAGTAAAATATATACCATTAATATTTTG
1 AAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTG
59960235 TACAACTTTA
Statistics
Matches: 185, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
134 4 0.02
135 89 0.48
138 92 0.50
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (136 bp):
AAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGC
ATAAATCAAATTCATATATTAATCATATTCTTTCAAAGAATATTAATTTTCATATCTTTTATATT
TTGACC
Found at i:59961575 original size:12 final size:12
Alignment explanation
Indices: 59961558--59961590 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
59961548 TTCTAAAACT
59961558 TTATTAATTAAA
1 TTATTAATTAAA
59961570 TTATTAATT-AA
1 TTATTAATTAAA
*
59961581 TAATTAATTA
1 TTATTAATTA
59961591 TTGTTTCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTATTAATTAAA
Found at i:59976860 original size:19 final size:19
Alignment explanation
Indices: 59976836--59976876 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
59976826 TATTCCTCGT
59976836 TTTCTATATATATTTT-TAA
1 TTTCTATATAT-TTTTATAA
59976855 TTTCTATATATTTTTATAA
1 TTTCTATATATTTTTATAA
59976874 TTT
1 TTT
59976877 AGAAAACTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTCTATATATTTTTATAA
Found at i:59977385 original size:40 final size:40
Alignment explanation
Indices: 59977287--59977387 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
59977277 TATTTAGTAA
* *
59977287 AATAAAATTTTTACTATATTTATTTGTGTTTTTTTAATAT
1 AATAAAATTTTTAATATATTTATTAGTGTTTTTTTAATAT
* *
59977327 AATAAAATATTTATTATATTTATGGTAGTG-TTTTTTAATAT
1 AATAAAATTTTTAATATATTTAT--TAGTGTTTTTTTAATAT
* *
59977368 AA-ATATTTTTTAATATATTT
1 AATAAAATTTTTAATATATTT
59977388 TTAATGTGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 35 0.67
41 13 0.25
42 4 0.08
ACGTcount: A:0.36, C:0.01, G:0.06, T:0.57
Consensus pattern (40 bp):
AATAAAATTTTTAATATATTTATTAGTGTTTTTTTAATAT
Found at i:59978056 original size:24 final size:23
Alignment explanation
Indices: 59978013--59978057 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
59978003 TTGAATTAAA
*
59978013 TATGAAATTAAAATATATATTTT
1 TATGAAATAAAAATATATATTTT
59978036 TATGAAATAAATAATATATATT
1 TATGAAATAAA-AATATATATT
59978058 CAATTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (23 bp):
TATGAAATAAAAATATATATTTT
Found at i:59980540 original size:22 final size:22
Alignment explanation
Indices: 59980496--59980554 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
59980486 ATGAATGTTG
*
59980496 TTTAAATTTATCACATATTATTAT
1 TTTAAATTTAT--CATATAATTAT
59980520 TTTAAATTTATCATATAATTAT
1 TTTAAATTTATCATATAATTAT
*
59980542 TTTAAGTTT-TCAT
1 TTTAAATTTATCAT
59980555 GTATCATTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 18 0.55
24 11 0.33
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTAAATTTATCATATAATTAT
Found at i:59983178 original size:15 final size:16
Alignment explanation
Indices: 59983151--59983181 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
59983141 TATCGATACT
59983151 AATCGAGCTAAGACTC
1 AATCGAGCTAAGACTC
59983167 AATCGA-CTAAGACTC
1 AATCGAGCTAAGACTC
59983182 TTTGAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (16 bp):
AATCGAGCTAAGACTC
Found at i:59984836 original size:52 final size:52
Alignment explanation
Indices: 59984779--59984883 Score: 147
Period size: 52 Copynumber: 2.0 Consensus size: 52
59984769 AGGTGTAAAA
* * * ** *
59984779 ACATAATGCATGAAATACAACAAAGGTTGGGCCTGTTTTTGCCCCTATGTGT
1 ACATAACGCATGAAATACAACAAAAGCTAAGCCTGTTTCTGCCCCTATGTGT
*
59984831 ACATAACGCATGAAATACAACAAAAGCTAAGCCTGTTTCTGTCCCTATGTGT
1 ACATAACGCATGAAATACAACAAAAGCTAAGCCTGTTTCTGCCCCTATGTGT
59984883 A
1 A
59984884 GGCCTATAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (52 bp):
ACATAACGCATGAAATACAACAAAAGCTAAGCCTGTTTCTGCCCCTATGTGT
Found at i:59996742 original size:23 final size:23
Alignment explanation
Indices: 59996716--59996770 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
59996706 ACTTCAAGGG
*
59996716 TTGACACTTATCATTCTCTTATA
1 TTGACACTTATCATCCTCTTATA
59996739 TTGACA-TCTATCATCCTCTTATA
1 TTGACACT-TATCATCCTCTTATA
*
59996762 TCGACACTT
1 TTGACACTT
59996771 GTTGAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 26 0.93
24 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.44
Consensus pattern (23 bp):
TTGACACTTATCATCCTCTTATA
Found at i:59997317 original size:22 final size:23
Alignment explanation
Indices: 59997283--59997399 Score: 67
Period size: 22 Copynumber: 4.9 Consensus size: 23
59997273 AATATTAATT
*
59997283 TTTTTAAAAATTATAATTTTTAA
1 TTTTTAAAAATTATAAATTTTAA
*
59997306 TTTTT-AATATTATAAATTTTGATA
1 TTTTTAAAAATTATAAATTTT-A-A
** * * *
59997330 TTACTAAACATATATTTTAATATTAA
1 TTTTTAAA-A-AT-TATAAATTTTAA
* * *
59997356 TTTTTTAAAAACTAGAATTTTTAA
1 -TTTTTAAAAATTATAAATTTTAA
*
59997380 TTTTT-AATATTATAAATTTT
1 TTTTTAAAAATTATAAATTTT
59997400 GATATTAATA
Statistics
Matches: 67, Mismatches: 20, Indels: 15
0.66 0.20 0.15
Matches are distributed among these distances:
22 24 0.36
23 11 0.16
24 11 0.16
25 3 0.04
26 2 0.03
27 9 0.13
28 7 0.10
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (23 bp):
TTTTTAAAAATTATAAATTTTAA
Found at i:59997365 original size:74 final size:75
Alignment explanation
Indices: 59997273--59997411 Score: 244
Period size: 74 Copynumber: 1.9 Consensus size: 75
59997263 TATTATAATA
* * *
59997273 AATATTAATTTTTTTAAAAATTATAATTTTTAATTTTTAATATTATAAATTTTGATATTACTAAA
1 AATATTAATTTTTTTAAAAACTAGAATTTTTAATTTTTAATATTATAAATTTTGATATTAATAAA
59997338 CATATATTTT
66 CATATATTTT
59997348 AATATTAA-TTTTTTAAAAACTAGAATTTTTAATTTTTAATATTATAAATTTTGATATTAATAAA
1 AATATTAATTTTTTTAAAAACTAGAATTTTTAATTTTTAATATTATAAATTTTGATATTAATAAA
59997412 TTTGTGTTTC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
74 53 0.87
75 8 0.13
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (75 bp):
AATATTAATTTTTTTAAAAACTAGAATTTTTAATTTTTAATATTATAAATTTTGATATTAATAAA
CATATATTTT
Found at i:59997404 original size:15 final size:16
Alignment explanation
Indices: 59997381--59997414 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
59997371 AATTTTTAAT
59997381 TTTTAATATT-ATAAA
1 TTTTAATATTAATAAA
*
59997396 TTTTGATATTAATAAA
1 TTTTAATATTAATAAA
59997412 TTT
1 TTT
59997415 GTGTTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTTAATATTAATAAA
Found at i:60000229 original size:54 final size:54
Alignment explanation
Indices: 60000110--60000231 Score: 145
Period size: 54 Copynumber: 2.3 Consensus size: 54
60000100 TGAAGCAGAC
* * * * * *
60000110 ATTGTGTTACGGGCCGAGACTTTAGCTTCATTAACGCGCAATTTTAGTCGAGAG
1 ATTGTGTTACGGGCCGACACTTTAGCCTCATCAACACGCAAGTTTAGTCGAAAG
** * * *
60000164 ATAATGCTACGGGCTGACACTTTAGCCTCATCAACATGCAAGTTTAGTCGAAAG
1 ATTGTGTTACGGGCCGACACTTTAGCCTCATCAACACGCAAGTTTAGTCGAAAG
60000218 ATTGTGTTACGGGC
1 ATTGTGTTACGGGC
60000232 AAAGACTTCA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (54 bp):
ATTGTGTTACGGGCCGACACTTTAGCCTCATCAACACGCAAGTTTAGTCGAAAG
Found at i:60001789 original size:6 final size:6
Alignment explanation
Indices: 60001780--60001817 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
60001770 ACATATATAT
60001780 ATGGTG ATGGTG ATGGTG ATGGTG ATGGTG ATGGTG AT
1 ATGGTG ATGGTG ATGGTG ATGGTG ATGGTG ATGGTG AT
60001818 ACTTACAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.34
Consensus pattern (6 bp):
ATGGTG
Found at i:60003315 original size:5 final size:5
Alignment explanation
Indices: 60003305--60003333 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
60003295 TGTCGTTCTA
60003305 CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
1 CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
60003334 GATGTTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTCTT
Found at i:60008763 original size:7 final size:7
Alignment explanation
Indices: 60008751--60008776 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
60008741 GTCAAAACCA
60008751 TTCAAAT
1 TTCAAAT
60008758 TTCAAAT
1 TTCAAAT
60008765 TTCAAAT
1 TTCAAAT
60008772 TTCAA
1 TTCAA
60008777 TAATCTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (7 bp):
TTCAAAT
Found at i:60012265 original size:20 final size:20
Alignment explanation
Indices: 60012240--60012350 Score: 68
Period size: 20 Copynumber: 5.3 Consensus size: 20
60012230 TCTTTAGAAT
60012240 TTTTTAAAAAATTATTATAA
1 TTTTTAAAAAATTATTATAA
*
60012260 TTTTTAAAAAATATAAATTTTAGAA
1 TTTTTAAAAAAT-T--A--TTATAA
*
60012285 TTTTTATAAATATT-TTA-AA
1 TTTTTA-AAAAATTATTATAA
* *
60012304 -TTTT-ATAAATTATTTTAAA
1 TTTTTAAAAAATTATTAT-AA
*
60012323 TTTTTAAAAATCATTTTTATAA
1 TTTTTAAAAA--ATTATTATAA
60012345 TTTTTA
1 TTTTTA
60012351 TTCAAAGAGA
Statistics
Matches: 70, Mismatches: 8, Indels: 24
0.69 0.08 0.24
Matches are distributed among these distances:
16 5 0.07
17 2 0.03
18 4 0.06
19 4 0.06
20 19 0.27
21 4 0.06
22 8 0.11
23 7 0.10
25 12 0.17
26 5 0.07
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (20 bp):
TTTTTAAAAAATTATTATAA
Found at i:60012294 original size:18 final size:16
Alignment explanation
Indices: 60012248--60012314 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
60012238 ATTTTTTAAA
*
60012248 AAATTATTATAATTTTT
1 AAATT-TTATAAATTTT
***
60012265 AAAAAATATAAATTTT
1 AAATTTTATAAATTTT
60012281 AGAATTTTTATAAATATTTT
1 A-AA-TTTTAT-AA-ATTTT
60012301 AAATTTTATAAATT
1 AAATTTTATAAATT
60012315 ATTTTAAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
16 13 0.33
17 7 0.18
18 9 0.23
19 4 0.10
20 6 0.15
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (16 bp):
AAATTTTATAAATTTT
Found at i:60012330 original size:18 final size:18
Alignment explanation
Indices: 60012276--60012350 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 18
60012266 AAAAATATAA
60012276 ATTTTAGAATTTTTATAAAT
1 ATTTTA-AATTTTTA-AAAT
*
60012296 ATTTTAAATTTTATAAATT
1 ATTTTAAATTTT-TAAAAT
60012315 ATTTTAAATTTTTAAAAAT
1 ATTTTAAATTTTT-AAAAT
60012334 CATTTTTATAATTTTTA
1 -A-TTTTA-AATTTTTA
60012351 TTCAAAGAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
18 1 0.02
19 25 0.52
20 9 0.19
21 6 0.12
22 7 0.15
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (18 bp):
ATTTTAAATTTTTAAAAT
Found at i:60013437 original size:20 final size:18
Alignment explanation
Indices: 60013402--60013438 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
60013392 TGAAACATGT
60013402 AATAAAATTAATTTTTAA
1 AATAAAATTAATTTTTAA
60013420 AATAATAATTATATTTTTA
1 AATAA-AATTA-ATTTTTA
60013439 TCACTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AATAAAATTAATTTTTAA
Found at i:60015006 original size:15 final size:16
Alignment explanation
Indices: 60014980--60015012 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
60014970 AGGTATAGTA
60014980 AAATATTTTAAAAAAT
1 AAATATTTTAAAAAAT
60014996 AAATA-TTTAAAAAAT
1 AAATATTTTAAAAAAT
60015011 AA
1 AA
60015013 GAGACACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATTTTAAAAAAT
Found at i:60044170 original size:22 final size:22
Alignment explanation
Indices: 60044145--60044196 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
60044135 TTGGTGAATT
60044145 GTTGATGATTTTGAAATGTGCC
1 GTTGATGATTTTGAAATGTGCC
*
60044167 GTTGATGATTTTGAAATGTGTC
1 GTTGATGATTTTGAAATGTGCC
*
60044189 ATTGATGA
1 GTTGATGA
60044197 ATGCTTGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.06, G:0.27, T:0.42
Consensus pattern (22 bp):
GTTGATGATTTTGAAATGTGCC
Found at i:60048667 original size:16 final size:16
Alignment explanation
Indices: 60048613--60048667 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
60048603 AATTTAGTCC
60048613 TGTTTTATTTTATTTTAT
1 TGTTTTA-TTTA-TTTAT
* *
60048631 TTTTTTA-TTATTTGT
1 TGTTTTATTTATTTAT
60048646 CT-TTTTATTTATTTAT
1 -TGTTTTATTTATTTAT
60048662 TGTTTT
1 TGTTTT
60048668 TAAAAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 10 0.32
16 15 0.48
18 6 0.19
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (16 bp):
TGTTTTATTTATTTAT
Found at i:60048720 original size:15 final size:15
Alignment explanation
Indices: 60048684--60048712 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60048674 TTAATTAGTT
60048684 TTATTATCATTATTA
1 TTATTATCATTATTA
60048699 TTATTATCATTATT
1 TTATTATCATTATT
60048713 GCTTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATTATCATTATTA
Found at i:60056713 original size:7 final size:8
Alignment explanation
Indices: 60056683--60056711 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
60056673 TTATTTTTTT
60056683 ATTTTTAA
1 ATTTTTAA
60056691 ATTTTTAA
1 ATTTTTAA
60056699 ATTTTTAA
1 ATTTTTAA
60056707 ATTTT
1 ATTTT
60056712 AAGAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
ATTTTTAA
Found at i:60062365 original size:14 final size:14
Alignment explanation
Indices: 60062348--60062381 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60062338 GGGTCGGGAA
*
60062348 TTTTTAAAGCAAAAT
1 TTTTTAAAG-AAAAC
60062363 TTTTTAAAGAAAAC
1 TTTTTAAAGAAAAC
60062377 TTTTT
1 TTTTT
60062382 GATATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (14 bp):
TTTTTAAAGAAAAC
Found at i:60062368 original size:15 final size:15
Alignment explanation
Indices: 60062348--60062381 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
60062338 GGGTCGGGAA
60062348 TTTTTAAAGCAAAA-T
1 TTTTTAAAG-AAAACT
60062363 TTTTTAAAGAAAACT
1 TTTTTAAAGAAAACT
60062378 TTTT
1 TTTT
60062382 GATATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (15 bp):
TTTTTAAAGAAAACT
Found at i:60073504 original size:121 final size:124
Alignment explanation
Indices: 60073314--60073565 Score: 402
Period size: 121 Copynumber: 2.1 Consensus size: 124
60073304 AAATAGTGGG
* * * *
60073314 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATT
1 AAATCGCTTATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
60073379 TCGCTACAG-TGGTCATGTAAGAAATAA-TTTTTTTGACGTTTCTGAGCAAATAGTATA
66 TCGCTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
* *
60073436 AAATCGC-TATACCAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
1 AAATCGCTTATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
* * *
60073500 TCGCTACAGTTGGTCATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
60073559 AAATCGC
1 AAATCGC
60073566 GCCCTCGTGG
Statistics
Matches: 119, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
121 60 0.50
122 24 0.20
123 35 0.29
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (124 bp):
AAATCGCTTATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
TCGCTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:60076088 original size:26 final size:26
Alignment explanation
Indices: 60076052--60076150 Score: 116
Period size: 26 Copynumber: 3.9 Consensus size: 26
60076042 TACACTTGCC
*
60076052 ATTAAATTAGGTTAGGTTAGGATTTA
1 ATTAAAATAGGTTAGGTTAGGATTTA
* *
60076078 ATTAAAATAGGTTAGGTTAGGTTTTC
1 ATTAAAATAGGTTAGGTTAGGATTTA
*
60076104 ATGTAAAATA-GTTAGGTT-GG-TTTT
1 AT-TAAAATAGGTTAGGTTAGGATTTA
*
60076128 ATTAAATTAGGTTAGG-TAGGATT
1 ATTAAAATAGGTTAGGTTAGGATT
60076151 CAATATTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
23 7 0.11
24 13 0.20
25 4 0.06
26 33 0.52
27 7 0.11
ACGTcount: A:0.32, C:0.01, G:0.24, T:0.42
Consensus pattern (26 bp):
ATTAAAATAGGTTAGGTTAGGATTTA
Found at i:60076259 original size:17 final size:17
Alignment explanation
Indices: 60076216--60076268 Score: 52
Period size: 21 Copynumber: 2.8 Consensus size: 17
60076206 GTTTTTATGG
60076216 TTTTAATTAATTAGGGT
1 TTTTAATTAATTAGGGT
*
60076233 TTGCAATTAATTAGTTAGGGT
1 TT----TTAATTAATTAGGGT
60076254 TTTTAATTAAATTAG
1 TTTTAATT-AATTAG
60076269 TTAAGGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
17 8 0.28
18 5 0.17
21 16 0.55
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (17 bp):
TTTTAATTAATTAGGGT
Found at i:60076411 original size:18 final size:18
Alignment explanation
Indices: 60076388--60076453 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 18
60076378 AGGTTAGTTT
60076388 TTTATTAATTAGGTTAGG
1 TTTATTAATTAGGTTAGG
* **
60076406 TTTATTAATTAAGTT-TT
1 TTTATTAATTAGGTTAGG
60076423 TTTAATTAATATAGGTTAGGG
1 TTT-ATTAAT-TAGGTTA-GG
60076444 TTT-TTAATTA
1 TTTATTAATTA
60076454 ATTATTAGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
17 3 0.08
18 22 0.58
19 10 0.26
21 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (18 bp):
TTTATTAATTAGGTTAGG
Found at i:60076428 original size:57 final size:55
Alignment explanation
Indices: 60076364--60076476 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 55
60076354 AGGGTTAGGG
*
60076364 TTTTTAATTAAGT-TAGGTTA-GTTTTTTATTAATTAGGTTAGGTTTATTAATTA-AGTT
1 TTTTTAATTAA-TATAGGTTAGGTTTTTAATTAATTA--TTA-GTTT-TTAATTATAGTT
60076421 TTTTTAATTAATATAGGTTAGGGTTTTTAATTAATTATTAGTTTTTAATTATAGTT
1 TTTTTAATTAATATAGGTTA-GGTTTTTAATTAATTATTAGTTTTTAATTATAGTT
60076477 AGGTTAGGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
55 7 0.14
56 9 0.18
57 21 0.41
59 14 0.27
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (55 bp):
TTTTTAATTAATATAGGTTAGGTTTTTAATTAATTATTAGTTTTTAATTATAGTT
Found at i:60076451 original size:37 final size:37
Alignment explanation
Indices: 60076385--60076495 Score: 122
Period size: 41 Copynumber: 2.9 Consensus size: 37
60076375 GTTAGGTTAG
*
60076385 TTTTTT-ATTAAT-TAGGTTAGGTTTATTAATTAA-GT
1 TTTTTTAATTAATATAGGTTAGGTTT-TTAATTAATAT
60076420 TTTTTTAATTAATATAGGTTAGGGTTTTTAATTAATTAT
1 TTTTTTAATTAATATAGGTTA-GGTTTTTAATTAA-TAT
60076459 TAGTTTTTAATT-ATAGTTAGGTTAGGTTTTTAATTAA
1 T--TTTTTAATTAATA--TAGGTTAGGTTTTTAATTAA
60076496 AGTTATGTTA
Statistics
Matches: 66, Mismatches: 1, Indels: 12
0.84 0.01 0.15
Matches are distributed among these distances:
35 6 0.09
36 6 0.09
37 15 0.23
38 5 0.08
39 2 0.03
40 3 0.05
41 22 0.33
42 7 0.11
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (37 bp):
TTTTTTAATTAATATAGGTTAGGTTTTTAATTAATAT
Found at i:60076466 original size:18 final size:19
Alignment explanation
Indices: 60076183--60076519 Score: 143
Period size: 20 Copynumber: 16.1 Consensus size: 19
60076173 TAATTAAATA
60076183 AATTAGCTTAGGTTTTTAATT
1 AATTAG-TTA-GTTTTTAATT
* *
60076204 AAGTT-TTTATGGTTTTAATT
1 AA-TTAGTTA-GTTTTTAATT
* **
60076224 AATTAG--GGTTTGCAATT
1 AATTAGTTAGTTTTTAATT
60076241 AATTAGTTAGGGTTTTTAATT
1 AATTAGTTA--GTTTTTAATT
*
60076262 AAATTAGTTAAG-GTTTAATT
1 -AATTAGTT-AGTTTTTAATT
*
60076282 AAATTAGGTTAGGGTTAGGGTTAATT
1 -AATTA-GTTA--GTT---TTTAATT
* *
60076308 AATTGGTTAGGTTTTAATT
1 AATTAGTTAGTTTTTAATT
60076327 AATTATGTTAGTTTTTAATAAAT
1 AATTA-GTTAGTTTTTAAT---T
*
60076350 AGTTAGGGTTAGGGTTTTTAATT
1 AATTA--GTTA--GTTTTTAATT
*
60076373 AAGTTAGGTTAGTTTTTTATT
1 AA-TTA-GTTAGTTTTTAATT
*
60076394 AATTAGGTTAG-GTTT-ATT
1 AATTA-GTTAGTTTTTAATT
60076412 AATTAAGTT--TTTTTAATT
1 AATT-AGTTAGTTTTTAATT
60076430 AATATAGGTTAGGGTTTTTAATT
1 AAT-TA-GTTA--GTTTTTAATT
60076453 AATTA-TTAGTTTTTAATT
1 AATTAGTTAGTTTTTAATT
60076471 ATAGTTAGGTTAGGTTTTTAATT
1 A-A-TTA-GTTA-GTTTTTAATT
60076494 AAAGTTATGTTAGGGTTTTTAATT
1 -AA-TTA-GTTA--GTTTTTAATT
60076518 AA
1 AA
60076520 AAGTAGTTAG
Statistics
Matches: 251, Mismatches: 26, Indels: 76
0.71 0.07 0.22
Matches are distributed among these distances:
17 16 0.06
18 28 0.11
19 21 0.08
20 55 0.22
21 25 0.10
22 18 0.07
23 46 0.18
24 23 0.09
25 4 0.02
26 15 0.06
ACGTcount: A:0.30, C:0.01, G:0.19, T:0.51
Consensus pattern (19 bp):
AATTAGTTAGTTTTTAATT
Found at i:60076510 original size:24 final size:23
Alignment explanation
Indices: 60076421--60076583 Score: 130
Period size: 23 Copynumber: 7.1 Consensus size: 23
60076411 TAATTAAGTT
60076421 TTTTTAATT-AATATAGGTTAGGG
1 TTTTTAATTAAAT-TAGGTTAGGG
60076444 TTTTTAATT-AATTA--TTA--G
1 TTTTTAATTAAATTAGGTTAGGG
*
60076462 TTTTTAATTATAGTTAGGTTA-GG
1 TTTTTAATTA-AATTAGGTTAGGG
*
60076485 TTTTTAATTAAAGTTATGTTAGGG
1 TTTTTAATTAAA-TTAGGTTAGGG
*
60076509 TTTTTAATTAAAAGTA-GTTAGGG
1 TTTTTAATT-AAATTAGGTTAGGG
60076532 TTAGTGTTGAA-T-AATTAGTAGTTAGGG
1 TT--T-TT-AATTAAATTAG--GTTAGGG
*
60076559 TTGTTAATTAAATTAGGTTAGGG
1 TTTTTAATTAAATTAGGTTAGGG
60076582 TT
1 TT
60076584 AGGGTTTTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 34
0.75 0.04 0.22
Matches are distributed among these distances:
18 10 0.09
20 7 0.06
22 6 0.05
23 50 0.43
24 20 0.17
25 10 0.09
26 3 0.03
27 11 0.09
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.48
Consensus pattern (23 bp):
TTTTTAATTAAATTAGGTTAGGG
Found at i:60078726 original size:14 final size:15
Alignment explanation
Indices: 60078709--60078742 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
60078699 AATAAATATC
60078709 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
60078723 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
60078738 TAAAA
1 TAAAA
60078743 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:60078877 original size:28 final size:28
Alignment explanation
Indices: 60078841--60078895 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
60078831 TGAAAATATT
60078841 AAAAATTTAAAATTAT-TTAAAAAAATA
1 AAAAATTTAAAATTATCTTAAAAAAATA
*
60078868 AAAAATTTTAAAATTTTCTTAAAAAAAT
1 AAAAA-TTTAAAATTATCTTAAAAAAAT
60078896 GAAATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 5 0.20
28 10 0.40
29 10 0.40
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (28 bp):
AAAAATTTAAAATTATCTTAAAAAAATA
Found at i:60078967 original size:22 final size:22
Alignment explanation
Indices: 60078937--60078978 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
60078927 ATTTGGAGAT
*
60078937 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
60078959 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
60078979 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:60078986 original size:30 final size:30
Alignment explanation
Indices: 60078950--60079008 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
60078940 TTGAAGGAAA
* *
60078950 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
60078980 TTGAGAGAATTTTGGAAGGAAATTGAGAG
1 TTGAGAGAATTTTGGAAGGAAATTGAGAG
60079009 AAATTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAAATTGAGAGT
Found at i:60078999 original size:52 final size:51
Alignment explanation
Indices: 60078928--60079030 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 51
60078918 TTAATATGGA
* * *
60078928 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
60078979 TTTGAGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
60079031 AATTTTTGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
51 4 0.09
52 33 0.72
53 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.32
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:60079005 original size:22 final size:22
Alignment explanation
Indices: 60078980--60079070 Score: 116
Period size: 22 Copynumber: 4.2 Consensus size: 22
60078970 ATTTGAGAGT
60078980 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
*
60079002 TTGAGAGAAATTTT-GAAGGGAA
1 TTGAGAG-AATTTTGGAAGGAAA
*
60079024 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAA-TTTTGGAAGGAAA
*
60079046 TTGAGAGAATTTTTGAA-GAAA
1 TTGAGAGAATTTTGGAAGGAAA
60079067 TTGA
1 TTGA
60079071 TATTGAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
20 1 0.02
21 14 0.23
22 36 0.59
23 10 0.16
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.31
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:60079029 original size:44 final size:44
Alignment explanation
Indices: 60078980--60079063 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
60078970 ATTTGAGAGT
*
60078980 TTGAGAGAA-TTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAAGG-AATTGAGAGAAATTTTGAAGGGAA
*
60079024 TTGAGAGAATTTTTGAAAGGAATTGAGAGAATTTTTGAAG
1 TTGAGAGAATTTTTGAAAGGAATTGAGAGAAATTTTGAAG
60079064 AAATTGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 28 0.76
45 9 0.24
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.31
Consensus pattern (44 bp):
TTGAGAGAATTTTTGAAAGGAATTGAGAGAAATTTTGAAGGGAA
Found at i:60080223 original size:11 final size:11
Alignment explanation
Indices: 60080207--60080231 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60080197 ACATGGCATA
60080207 AATGATGTCAT
1 AATGATGTCAT
60080218 AATGATGTCAT
1 AATGATGTCAT
60080229 AAT
1 AAT
60080232 CTAATTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (11 bp):
AATGATGTCAT
Found at i:60098936 original size:193 final size:192
Alignment explanation
Indices: 60098372--60098988 Score: 1117
Period size: 192 Copynumber: 3.2 Consensus size: 192
60098362 CTTTCCAAGG
60098372 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTT
60098437 TTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
65 TTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
*
60098502 GTTTATGTTTTAAATTGACTCATACTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
60098565 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
60098630 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCCGAGGTATTTTTAG
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
60098695 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
60098757 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTA
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTT-
*** *
60098822 AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
65 TTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
*
60098887 TTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* **
60098950 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCA
1 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
60098989 GCTCACATGT
Statistics
Matches: 411, Mismatches: 11, Indels: 3
0.97 0.03 0.01
Matches are distributed among these distances:
192 193 0.47
193 183 0.45
194 35 0.09
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (192 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:60099150 original size:85 final size:86
Alignment explanation
Indices: 60098946--60099200 Score: 266
Period size: 91 Copynumber: 2.9 Consensus size: 86
60098936 AATTTTTGTT
* *
60098946 TTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGCTCACATGTTGAGGTATTTTC
1 TTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAG-GCAC--GCTGAGGTATTTTC
* * **
60099011 AATTTATGTTTTTTTTCAATCTATGC
62 AATTTCTGTCTTTACTCAATCTAT-C
* *
60099037 TTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTATTTTCAA
1 TTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCACGCTGAGGTATTTTCAA
60099102 TTTCTG-CTTTACT-AATTCTA-C
64 TTTCTGTCTTTACTCAA-TCTATC
* *
60099123 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 -TTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---CACGCTGAGGTATTTTC
* *
60099187 AAATTCTGTTTTTA
62 AATTTCTGTCTTTA
60099201 ATTTCTGTTT
Statistics
Matches: 143, Mismatches: 14, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
86 1 0.01
87 29 0.20
88 12 0.08
89 20 0.14
91 43 0.30
92 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (86 bp):
TTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAATT
TCTGTCTTTACTCAATCTATC
Found at i:60099203 original size:85 final size:87
Alignment explanation
Indices: 60098946--60099203 Score: 280
Period size: 85 Copynumber: 2.9 Consensus size: 87
60098936 AATTTTTGTT
* *
60098946 TTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCA-GCTCACATGTTGAGGTATTTT
1 TTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTTT
*
60099010 CAATTTATGTTTTTTTTCAA-TCTATGC
64 CAATTTCTG--TTTTTT-AATTCTAT-C
* *
60099037 TTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTTT
1 TTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTTT
**
60099099 CAATTTCTGCTTTACTAATTCTA-C
64 CAATTTCTG-TTTTTTAATTCTATC
* *
60099123 TTTTC-AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTC
1 -TTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTC
*
60099187 AAATTCTG-TTTTTAATT
65 AATTTCTGTTTTTTAATT
60099204 TCTGTTTTTT
Statistics
Matches: 145, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
84 3 0.02
85 40 0.28
86 1 0.01
87 29 0.20
88 8 0.06
89 22 0.15
91 40 0.28
92 1 0.01
93 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (87 bp):
TTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCA
ATTTCTGTTTTTTAATTCTATC
Found at i:60099464 original size:52 final size:51
Alignment explanation
Indices: 60099321--60099687 Score: 510
Period size: 52 Copynumber: 7.0 Consensus size: 51
60099311 TACTTTTCAA
*
60099321 TTTCTGTTTTTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
1 TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
*
60099372 AATTTCTATTTTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 --TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
60099424 TTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 TTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
60099476 TTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
1 TTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
*
60099530 AATTTCTATTTTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 --TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
60099582 TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
1 TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
* * *
60099633 TTGCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 TTTC----TAT-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
60099688 GGCTCACGTG
Statistics
Matches: 293, Mismatches: 8, Indels: 24
0.90 0.02 0.07
Matches are distributed among these distances:
50 24 0.08
51 40 0.14
52 91 0.31
53 11 0.04
54 71 0.24
55 39 0.13
56 17 0.06
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (51 bp):
TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:60099525 original size:158 final size:160
Alignment explanation
Indices: 60099333--60099687 Score: 626
Period size: 158 Copynumber: 2.2 Consensus size: 160
60099323 TCTGTTTTTC
60099333 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAACCAACTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAACCAACTC
60099398 ATATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGG
66 ATATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGG
* *
60099463 TGAGTTGAGCCTTTTTC-TATT-T-TTCAAA
130 TGAGTTGAGCCTTTTGCAAATTCTGTTCAAA
60099491 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAACCAACTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAACCAACTC
60099556 ATATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGT
66 ATATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGT
***
60099621 GAGTTGAGCCTTTTGCAAATTCTGTTTTCA
131 GAGTTGAGCCTTTTGCAAATTCTGTTCAAA
*
60099651 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
60099688 GGCTCACGTG
Statistics
Matches: 188, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
157 42 0.22
158 106 0.56
159 1 0.01
160 39 0.21
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (160 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCAAAAACCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTTTTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTTTTGCAAATTCTGTTCAAA
Found at i:60099548 original size:106 final size:106
Alignment explanation
Indices: 60099313--60099687 Score: 561
Period size: 106 Copynumber: 3.5 Consensus size: 106
60099303 TCAATTTCTA
*
60099313 CTTTTCAATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTT
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--TTT
*
60099377 CTATTTTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
62 CTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
60099421 C--TT---TTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTCT
1 CTTTTCAATTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTCT
60099481 ATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
64 ATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
60099525 CTTTT-AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTCTAT
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTCTAT
60099589 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
60099630 CTTTTGCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 CTTTT-CAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
60099688 GGCTCACGTG
Statistics
Matches: 249, Mismatches: 7, Indels: 24
0.89 0.03 0.09
Matches are distributed among these distances:
102 12 0.05
103 11 0.04
104 37 0.15
105 41 0.16
106 129 0.52
107 6 0.02
108 13 0.05
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (106 bp):
CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTCTAT
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:60099999 original size:30 final size:30
Alignment explanation
Indices: 60099959--60100060 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 30
60099949 AAAAAAATAA
* * *
60099959 AAATTGCATTTTGACCCCCAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* * *
60099989 AAATTTCATTTTTACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
60100019 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
60100049 AAATTTCATTTT
1 AAATTTCATTTT
60100061 AATCCTAAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
29 4 0.07
30 55 0.93
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:60100669 original size:12 final size:12
Alignment explanation
Indices: 60100616--60100689 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 12
60100606 AGAGAAGAAG
60100616 AAAAAAG-AA-A
1 AAAAAAGAAAGA
*
60100626 AAAAAAG-AGGA
1 AAAAAAGAAAGA
*
60100637 AGAAAAAGAGAG-
1 A-AAAAAGAAAGA
*
60100649 AGAAAAGAAAGA
1 AAAAAAGAAAGA
60100661 AAAAAAGAAA-A
1 AAAAAAGAAAGA
* *
60100672 AAAATAAAAAATA
1 AAAA-AAGAAAGA
60100685 AAAAA
1 AAAAA
60100690 TAAAAAACAG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
10 8 0.16
11 15 0.29
12 22 0.43
13 6 0.12
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (12 bp):
AAAAAAGAAAGA
Found at i:60100669 original size:17 final size:17
Alignment explanation
Indices: 60100610--60100682 Score: 58
Period size: 17 Copynumber: 4.1 Consensus size: 17
60100600 AGAAGAAGAG
60100610 AAGAAGAAAAAAGAAAAA
1 AAGAA-AAAAAAGAAAAA
* **
60100628 AA-AAGAGGAAGAAAAA
1 AAGAAAAAAAAGAAAAA
60100644 GAGAGAGAAAAGAAAGAAAAA
1 -A-AGA-AAAA-AAAGAAAAA
*
60100665 AAGAAAAAAAATAAAAA
1 AAGAAAAAAAAGAAAAA
60100682 A
1 A
60100683 TAAAAAATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
16 9 0.21
17 12 0.28
18 7 0.16
19 4 0.09
20 3 0.07
21 8 0.19
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (17 bp):
AAGAAAAAAAAGAAAAA
Found at i:60100680 original size:6 final size:7
Alignment explanation
Indices: 60100670--60100696 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
60100660 AAAAAAAGAA
60100670 AAAAAAT
1 AAAAAAT
60100677 AAAAAAT
1 AAAAAAT
60100684 AAAAAAT
1 AAAAAAT
60100691 AAAAAA
1 AAAAAA
60100697 CAGCAGGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:60101394 original size:18 final size:18
Alignment explanation
Indices: 60101360--60101394 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60101350 AATTTTTGAC
*
60101360 TTTTCGCGTTTTCAAAAG
1 TTTTCGCGTTTTAAAAAG
*
60101378 TTTTCGTGTTTTAAAAA
1 TTTTCGCGTTTTAAAAA
60101395 AAATTCACGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (18 bp):
TTTTCGCGTTTTAAAAAG
Found at i:60101431 original size:25 final size:25
Alignment explanation
Indices: 60101403--60101464 Score: 94
Period size: 23 Copynumber: 2.6 Consensus size: 25
60101393 AAAAATTCAC
60101403 GTTTTAAAATGAAAAAAATTTTCGT
1 GTTTTAAAATGAAAAAAATTTTCGT
*
60101428 GTTTTCAAATG--AAAAATTTTCGT
1 GTTTTAAAATGAAAAAAATTTTCGT
60101451 GTTTTAAAAT-AAAA
1 GTTTTAAAATGAAAA
60101465 CAAAAAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 21 0.64
24 2 0.06
25 10 0.30
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (25 bp):
GTTTTAAAATGAAAAAAATTTTCGT
Found at i:60101442 original size:23 final size:22
Alignment explanation
Indices: 60101373--60101464 Score: 84
Period size: 23 Copynumber: 4.2 Consensus size: 22
60101363 TCGCGTTTTC
*
60101373 AAAAGTTTTCGTGTTTT-AAA-
1 AAAAATTTTCGTGTTTTAAAAT
**
60101393 AAAAA--TTCACGTTTTAAAAT
1 AAAAATTTTCGTGTTTTAAAAT
*
60101413 GAAAAAAATTTTCGTGTTTTCAAAT
1 ---AAAAATTTTCGTGTTTTAAAAT
60101438 GAAAAATTTTCGTGTTTTAAAAT
1 -AAAAATTTTCGTGTTTTAAAAT
60101461 AAAA
1 AAAA
60101465 CAAAAAACAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
18 8 0.14
19 3 0.05
20 4 0.07
22 4 0.07
23 26 0.46
25 12 0.21
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (22 bp):
AAAAATTTTCGTGTTTTAAAAT
Found at i:60101510 original size:18 final size:18
Alignment explanation
Indices: 60101489--60101595 Score: 92
Period size: 18 Copynumber: 5.6 Consensus size: 18
60101479 AACTCCCGTC
60101489 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
*
60101507 TTTCAAAAATTCTCGTG-
1 TTTCAAAAATTTTCGTGT
**
60101524 TTAAAAAAATTTTGTGTTTTCGTGT
1 TTTCAAAAA-------TTTTCGTGT
60101549 TTTCAAAAAATTTTCGTG-
1 TTTC-AAAAATTTTCGTGT
*
60101567 TTTCAAAAATCTTCGTGT
1 TTTCAAAAATTTTCGTGT
60101585 TTTCAAAAATT
1 TTTCAAAAATT
60101596 ATTATTTTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
17 19 0.27
18 30 0.42
19 8 0.11
24 7 0.10
25 2 0.03
26 5 0.07
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:60101575 original size:43 final size:43
Alignment explanation
Indices: 60101498--60101588 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
60101488 CTTTCAAAAA
*
60101498 TTTTCGTGTTTTCAAAAATTCTCGTGTTAAAAAAAT-TTTGTG
1 TTTTCGTGTTTTCAAAAATTCTCGTGTTAAAAAAATCTTCGTG
* **
60101540 TTTTCGTGTTTTCAAAAAATTTTCGTGTTTCAAAAATCTTCGTG
1 TTTTCGTGTTTTC-AAAAATTCTCGTGTTAAAAAAATCTTCGTG
60101584 TTTTC
1 TTTTC
60101589 AAAAATTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 13 0.30
43 20 0.47
44 10 0.23
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.49
Consensus pattern (43 bp):
TTTTCGTGTTTTCAAAAATTCTCGTGTTAAAAAAATCTTCGTG
Found at i:60112388 original size:26 final size:26
Alignment explanation
Indices: 60112333--60112389 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
60112323 TGTAAAAATC
* * **
60112333 ATGAAAATAATTATTTTTAACTTTTC
1 ATGAAAATAAATATTTTTAAATTTAA
60112359 ATGAAAATAAATATTTTTAAATTTAA
1 ATGAAAATAAATATTTTTAAATTTAA
60112385 ATGAA
1 ATGAA
60112390 TTAGGCTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (26 bp):
ATGAAAATAAATATTTTTAAATTTAA
Found at i:60115349 original size:20 final size:20
Alignment explanation
Indices: 60115315--60115356 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
60115305 AACTATTTAA
** *
60115315 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
60115335 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
60115355 AT
1 AT
60115357 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:60119518 original size:19 final size:19
Alignment explanation
Indices: 60119494--60119531 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60119484 TATGGCCTAA
60119494 GCCAATTTCACCTATTTCT
1 GCCAATTTCACCTATTTCT
60119513 GCCAATTTCACCTATTTCT
1 GCCAATTTCACCTATTTCT
60119532 ATCTGTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.32, G:0.05, T:0.42
Consensus pattern (19 bp):
GCCAATTTCACCTATTTCT
Found at i:60128860 original size:24 final size:23
Alignment explanation
Indices: 60128827--60128882 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
60128817 AGAAACAATG
*
60128827 AATATATACATGAGATGGTATAAA
1 AATATATACATGAAAT-GTATAAA
*
60128851 AATATGTACATGAAATGTATAAGA
1 AATATATACATGAAATGTATAA-A
*
60128875 ACTATATA
1 AATATATA
60128883 TAACTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.30
Consensus pattern (23 bp):
AATATATACATGAAATGTATAAA
Found at i:60129516 original size:23 final size:22
Alignment explanation
Indices: 60129490--60129543 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
60129480 TGTATACACG
60129490 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* **
60129513 TACATAATAATAATAATGGTAA
1 TACATAATAAAAATAATACTAA
60129535 TAC-TAATAA
1 TACATAATAA
60129544 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:60129524 original size:3 final size:3
Alignment explanation
Indices: 60129493--60129563 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
60129483 ATACACGTAC
* * * * *
60129493 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
60129540 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
60129564 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:60130053 original size:10 final size:11
Alignment explanation
Indices: 60130025--60130057 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
60130015 AAGAAAAAAA
*
60130025 GAAGAGAGAGG
1 GAAGAGAGAAG
60130036 GAAGAGAGAAG
1 GAAGAGAGAAG
60130047 G-AGAGAGAAG
1 GAAGAGAGAAG
60130057 G
1 G
60130058 GAGGGGGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAG
Found at i:60130551 original size:21 final size:22
Alignment explanation
Indices: 60130505--60130556 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
60130495 AGTGTCAGAC
*
60130505 GGTATGGGACTGTTGTAGTGGA
1 GGTATGGGGCTGTTGTAGTGGA
*
60130527 GGTATGGGGCTGTTGT-GTGGG
1 GGTATGGGGCTGTTGTAGTGGA
60130548 GGTATGGGG
1 GGTATGGGG
60130557 TTGCTTCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.12, C:0.04, G:0.54, T:0.31
Consensus pattern (22 bp):
GGTATGGGGCTGTTGTAGTGGA
Found at i:60131529 original size:128 final size:127
Alignment explanation
Indices: 60131293--60131535 Score: 384
Period size: 128 Copynumber: 1.9 Consensus size: 127
60131283 GAACTGAGGC
* * *
60131293 TCAACTCACTTTCTCGCAATATGAGTTGAATTTTGAAACAGAAATTGAAAATTACCTCAACGTGT
1 TCAACTCACTCTCTCGCAATATGAGTTGAATTTTGAAACAAAAATTGAAAATTACCTCAACGTGC
60131358 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-AGAAGAAATTAAAGGT
66 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAGAAATTAAAGGT
**
60131419 TCAACTCAC-CTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAA-TACCTCGGCT
1 TCAACTCACTCTCTCGCAATATGAGTTGAATTTTG--AAA-CAAAAATTGAAAATTACCTCAAC-
60131482 GTGCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
62 GTGCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
60131536 ATTGAAAATA
Statistics
Matches: 107, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
125 24 0.22
126 9 0.08
127 10 0.09
128 60 0.56
129 4 0.04
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (127 bp):
TCAACTCACTCTCTCGCAATATGAGTTGAATTTTGAAACAAAAATTGAAAATTACCTCAACGTGC
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAGAAATTAAAGGT
Found at i:60131584 original size:71 final size:72
Alignment explanation
Indices: 60131419--60131612 Score: 295
Period size: 71 Copynumber: 2.7 Consensus size: 72
60131409 AATTAAAGGT
** * *
60131419 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAATACCTCGGCTGT
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAA-CAGAAATTGAAAATACCTCAGCTGT
60131484 GCCTGAGGC
64 GCCTGAGGC
*
60131493 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGC-GTGT
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGCTGTGC
60131557 CTGAGGC
66 CTGAGGC
*
60131564 TCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAAAGAAATT-AAAA
1 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAA
60131613 GGTTCAACTC
Statistics
Matches: 114, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
69 4 0.04
70 17 0.15
71 37 0.32
72 20 0.18
73 4 0.04
74 32 0.28
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (72 bp):
TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGCTGTGC
CTGAGGC
Found at i:60131703 original size:121 final size:123
Alignment explanation
Indices: 60131493--60131722 Score: 401
Period size: 121 Copynumber: 1.9 Consensus size: 123
60131483 TGCCTGAGGC
**
60131493 TCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC
**
60131558 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAAAGAAATTAAAAGGT
66 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAGAAATTAAAAGGT
*
60131616 TCAACTCACCTCTCGCAATATGAGTTG-ATTTTGAAAACAGAAATTGAAATTACCTCA-CGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC
60131679 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA
66 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA
60131723 CAAAAATTGA
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
121 48 0.47
122 29 0.28
123 25 0.25
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (123 bp):
TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAGAAATTAAAAGGT
Found at i:60131748 original size:192 final size:197
Alignment explanation
Indices: 60131286--60131797 Score: 771
Period size: 199 Copynumber: 2.6 Consensus size: 197
60131276 AACATGTGAA
60131286 CTGAGGCTCAACTCACTTTCTCGCAATATGAGTTGAATTTTG-AAACAGAAATTGAAAATTACCT
1 CTGAGGCTCAACTCAC-TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTG-AAATTACCT
* *
60131350 CAACGTGTCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAAGAAGAAATTAA
64 CAGCGTGTCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTG-AAAACAAGAAATTAA
*
60131415 AGGTTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAATACCTCGG
127 AGGTTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAATACCTCGA
60131480 CTGTGC
192 CTGTGC
* *
60131486 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
1 CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
60131551 GCGTGTCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAA-AAGAAATTAAAAGG
66 GCGTGTCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAACAAGAAATT-AAAGG
* *
60131615 TTCAACTCACCTCTCGCAATATGAGTTG-ATTTTG-AAAA-CAGAAATTGAAATTACCTC-AC-G
130 TTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAATACCTCGACTG
*
60131675 TGT
195 TGC
* *
60131678 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTC
*
60131742 AGCGTGTCCTGAGGCTCAAC-CA--TCTCGCAA-ATGAGTTGAATTTGAAAACAA-AAATT
65 AGCGTGT-CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAACAAGAAATT
60131798 GAAATTACCT
Statistics
Matches: 295, Mismatches: 12, Indels: 21
0.90 0.04 0.06
Matches are distributed among these distances:
189 22 0.07
190 10 0.03
191 6 0.02
192 65 0.22
193 13 0.04
194 17 0.06
195 4 0.01
196 14 0.05
197 37 0.13
198 6 0.02
199 74 0.25
200 27 0.09
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (197 bp):
CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAACAAGAAATTAAAGGT
TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAATACCTCGACTGT
GC
Found at i:60131885 original size:139 final size:139
Alignment explanation
Indices: 60131616--60132146 Score: 780
Period size: 139 Copynumber: 3.8 Consensus size: 139
60131606 ATTAAAAGGT
*
60131616 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCA-CGTGT-C
1 TCAACTCA--TCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCC
60131679 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAG
64 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAAC-AAAATTGAAATTACCTCAG
60131744 CGTGTCCTGAGGC
127 CGTGTCCTGAGGC
*
60131757 TCAAC-CATCTCGCAA-ATGAGTTGAATTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTG
1 TCAACTCATCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTG
*
60131820 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGC
66 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAACA-AAATTGAAATTACCTCAGC
60131884 GTGTCCTGAGGC
128 GTGTCCTGAGGC
*
60131896 TCAACTCACCTCTGCAATATGAGTTGATTTTGAAAA-ACAAAATTG-AATT-CCTCAGCGTGTCC
1 TCAACTCATCTC-GCAATATGAGTTGATTTTGAAAACA-AAAATTGAAATTACCTCAGCGTGTCC
60131958 TG-GGCTCAAC-CA--TCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATTACCTCAGCG
64 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATTACCTCAGCG
60132019 TGTCCTGAGGC
129 TGTCCTGAGGC
* *
60132030 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTG
1 TCAACTCA--TCTCGCAATATGAGTTGA---TTTTGAAAACAAAAATTGAAATTACCTCAGCGTG
*
60132095 TCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAA
61 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAA
60132147 ATTAAAAGGC
Statistics
Matches: 358, Mismatches: 10, Indels: 40
0.88 0.02 0.10
Matches are distributed among these distances:
134 39 0.11
135 24 0.07
136 3 0.01
137 54 0.15
138 49 0.14
139 68 0.19
140 42 0.12
141 22 0.06
142 26 0.07
144 22 0.06
145 9 0.03
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (139 bp):
TCAACTCATCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATTACCTCAGCGTG
TCCTGAGGC
Found at i:60131895 original size:72 final size:71
Alignment explanation
Indices: 60131616--60132149 Score: 803
Period size: 72 Copynumber: 7.6 Consensus size: 71
60131606 ATTAAAAGGT
60131616 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCA-CGTGT-C
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCC
60131679 TGAGGC
66 TGAGGC
*
60131685 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTC
60131750 CTGAGGC
65 CTGAGGC
* *
60131757 TCAAC-CA--TCTCGCAA-ATGAGTTGAATTTGAAAACAAAAATTGAAATTACCTCAGCGTGTCC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCC
60131818 TGAGGC
66 TGAGGC
*
60131824 TCAACTCA-CTCTCGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGT
60131888 CCTGAGGC
64 CCTGAGGC
60131896 TCAACTCACCTCT-GCAATATGAGTTGATTTTGAAAAACA-AAATTG-AATT-CCTCAGCGTGTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTC
60131957 CTG-GGC
65 CTGAGGC
60131963 TCAAC-CA--TCTCGCAATATGAGTTGATTTTGAAAACA-AAATTGAAATTACCTCAGCGTGTCC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCC
60132024 TGAGGC
66 TGAGGC
** *
60132030 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
60132095 TCCTGAGGC
63 TCCTGAGGC
* *
60132104 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAGAAATT
60132150 AAAAGGCTTA
Statistics
Matches: 431, Mismatches: 12, Indels: 41
0.89 0.02 0.08
Matches are distributed among these distances:
64 15 0.03
65 23 0.05
66 17 0.04
67 59 0.14
68 32 0.07
69 53 0.12
70 61 0.14
71 17 0.04
72 84 0.19
73 14 0.03
74 56 0.13
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCC
TGAGGC
Found at i:60131915 original size:331 final size:344
Alignment explanation
Indices: 60131419--60132153 Score: 1024
Period size: 331 Copynumber: 2.1 Consensus size: 344
60131409 AATTAAAGGT
*
60131419 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAAGCAAAAATTGAAAATACCTCGGCTGT
1 TCAACTCA-CTCTCGCAATATGAGTTGAA-TTTGAAAAA-CAAAAATTGAAAATACCTCAGCTGT
*
60131484 GCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
63 GCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCT
**
60131549 CAGCGTGTCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAA-AGAAATT-AA-
128 CAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACA-AAATTGAAT
60131611 AAG-GT-T-C-AACTC-ACC-TCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACC
192 AAGCGTGTCCGAACTCAACCATCTCGCAATATGAGTTGATTTTGAAAACA-AAATTGAAATTACC
60131670 TCA-CGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTG
256 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAAAAATTG
60131732 AAATTACCTCAGCGTGTCCTGAGGC
320 AAATTACCTCAGCGTGTCCTGAGGC
*
60131757 TCAAC-CA-TCTCGCAA-ATGAGTTGAATTTG-AAAACAAAAATTGAAATTACCTCAGC-GTGTC
1 TCAACTCACTCTCGCAATATGAGTTGAATTTGAAAAACAAAAATTGAAAATACCTCAGCTGTG-C
* * *
60131817 CTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTC
65 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAAATACCTC
60131881 AGCGTGTCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTGATTTTGAAAAACAAAATTGAATT
129 AGCGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAATTGAA--
* **
60131945 CCTCAGCGTGTCCTGGGCTCAACCATCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATT
191 --TAAGCGTGTCC-GAACTCAACCATCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATT
** * *
60132010 ACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAA
253 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAAAA
60132075 ATTGAAATTACCTCAGCGTGTCCTGAGGC
316 ATTGAAATTACCTCAGCGTGTCCTGAGGC
* *
60132104 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCA-CTCTCGCAATATGAGTTGAATTTGAAAAACAAAAATTGAAAA
60132154 GGCTTAACTC
Statistics
Matches: 352, Mismatches: 18, Indels: 41
0.86 0.04 0.10
Matches are distributed among these distances:
330 21 0.06
331 98 0.28
332 25 0.07
333 4 0.01
334 10 0.03
335 8 0.02
337 4 0.01
338 7 0.02
339 1 0.00
340 1 0.00
342 3 0.01
343 20 0.06
344 34 0.10
345 33 0.09
347 41 0.12
348 7 0.02
350 7 0.02
351 16 0.05
352 12 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (344 bp):
TCAACTCACTCTCGCAATATGAGTTGAATTTGAAAAACAAAAATTGAAAATACCTCAGCTGTGCC
TGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAG
CGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAATTGAATAAGC
GTGTCCGAACTCAACCATCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATTACCTCAGC
GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAAATTGAAATTA
CCTCAGCGTGTCCTGAGGC
Found at i:60132302 original size:190 final size:197
Alignment explanation
Indices: 60131970--60132325 Score: 503
Period size: 190 Copynumber: 1.8 Consensus size: 197
60131960 GGCTCAACCA
* * * * * *
60131970 TCTCGCAATATGAGTTGATTTTGAAAACAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
1 TCTCGCAATATGAGTTCAATTTGAAAACAAAACTGAAAATACCTCAGCGTGCCCCGAGGCTCAAC
* *** * * *
60132035 TCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
66 TCATCTCTCGCAATATGAGTTGATTTTTGAAACAAAAGAAATTGAAAATACCTCAGCGTGACCTG
60132100 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCA
131 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCA
60132165 CT
196 CT
*
60132167 TCTCGCAATATGAG-TCAATTT-AAAACATAAACT-AAAATACCTCGGCGTGCCCCGAGGCTCAA
1 TCTCGCAATATGAGTTCAATTTGAAAACA-AAACTGAAAATACCTCAGCGTGCCCCGAGGCTCAA
60132229 CTCA-CTCT-GCAATATGAGTTGA-TTTTGAAACAAAAG-AATT-AAAATACCTCAGCGTGACCT
65 CTCATCTCTCGCAATATGAGTTGATTTTTGAAACAAAAGAAATTGAAAATACCTCAGCGTGACCT
* *
60132289 GAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTT
130 GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
60132326 CCTTGGAAAG
Statistics
Matches: 142, Mismatches: 16, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
190 53 0.37
191 4 0.03
192 10 0.07
193 14 0.10
194 3 0.02
195 35 0.25
196 9 0.06
197 14 0.10
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (197 bp):
TCTCGCAATATGAGTTCAATTTGAAAACAAAACTGAAAATACCTCAGCGTGCCCCGAGGCTCAAC
TCATCTCTCGCAATATGAGTTGATTTTTGAAACAAAAGAAATTGAAAATACCTCAGCGTGACCTG
AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCA
CT
Found at i:60144285 original size:24 final size:24
Alignment explanation
Indices: 60144241--60144297 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
60144231 AGAAACAATG
*
60144241 AATATATACATGAGATGGTATAAA
1 AATATATACATGAAATGGTATAAA
*
60144265 AATATGTACATGGAAAT-GTATAAGA
1 AATATATACAT-GAAATGGTATAA-A
*
60144290 ACTATATA
1 AATATATA
60144298 TAACTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (24 bp):
AATATATACATGAAATGGTATAAA
Found at i:60144925 original size:23 final size:22
Alignment explanation
Indices: 60144899--60144952 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
60144889 TGTATACACG
60144899 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATA-ATACTAA
* **
60144922 TACATAATAATAATAATGGTAA
1 TACATAATAAAAATAATACTAA
60144944 TAC-TAATAA
1 TACATAATAA
60144953 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (22 bp):
TACATAATAAAAATAATACTAA
Found at i:60144933 original size:3 final size:3
Alignment explanation
Indices: 60144902--60144972 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
60144892 ATACACGTAC
* * * * *
60144902 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
60144949 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
60144973 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:60145941 original size:22 final size:20
Alignment explanation
Indices: 60145916--60145966 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 20
60145906 AGTGTCAGAC
60145916 GGTATGGGACTGTTGTAGTGG
1 GGTATGGG-CTGTTGTAGTGG
60145937 AGGTATAGGGCTGTTGTAGTGG
1 -GGTAT-GGGCTGTTGTAGTGG
60145959 GGTATGGG
1 GGTATGGG
60145967 GTTGCTTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.11
21 5 0.18
22 17 0.61
23 3 0.11
ACGTcount: A:0.16, C:0.04, G:0.49, T:0.31
Consensus pattern (20 bp):
GGTATGGGCTGTTGTAGTGG
Found at i:60148258 original size:22 final size:22
Alignment explanation
Indices: 60148224--60148315 Score: 141
Period size: 22 Copynumber: 4.2 Consensus size: 22
60148214 AAATTCAATA
60148224 TCAATTTCCTTCAAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
60148246 TCAA-TTCCTTTCAAAAATTCTC
1 TCAATTTCC-TTCAAAAATTCTC
* *
60148268 TCAATTCCCTTCAAAATTTCTC
1 TCAATTTCCTTCAAAAATTCTC
*
60148290 TCAATTTCCTTCCAAAATTCTC
1 TCAATTTCCTTCAAAAATTCTC
60148312 TCAA
1 TCAA
60148316 ACTTTCAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
21 4 0.06
22 56 0.89
23 3 0.05
ACGTcount: A:0.30, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TCAATTTCCTTCAAAAATTCTC
Found at i:60148433 original size:28 final size:27
Alignment explanation
Indices: 60148400--60148456 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
60148390 ATTAAATTTC
60148400 ATTTTTTTAAGAAAATTTGAAAAATTTTT
1 ATTTTTTTAA-AAAATTT-AAAAATTTTT
* *
60148429 ATTTTTTTAAATAATTTTAAAATTTTT
1 ATTTTTTTAAAAAATTTAAAAATTTTT
60148456 A
1 A
60148457 ATATTTTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 10 0.38
28 6 0.23
29 10 0.38
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (27 bp):
ATTTTTTTAAAAAATTTAAAAATTTTT
Found at i:60148553 original size:7 final size:7
Alignment explanation
Indices: 60148536--60148565 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
60148526 ATGGCAAGTA
60148536 TTAAA-T
1 TTAAATT
60148542 TTAAATT
1 TTAAATT
60148549 TTAAATT
1 TTAAATT
60148556 TTAAATT
1 TTAAATT
60148563 TTA
1 TTA
60148566 TTTAAGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAAATT
Found at i:60148590 original size:14 final size:15
Alignment explanation
Indices: 60148561--60148594 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
60148551 AAATTTTAAA
60148561 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
60148576 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
60148590 TTTTA
1 TTTTA
60148595 GATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:60152582 original size:123 final size:124
Alignment explanation
Indices: 60152369--60152603 Score: 375
Period size: 123 Copynumber: 1.9 Consensus size: 124
60152359 GCGATTTGAC
60152369 ACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGT
1 ACTATTTGCTCAGAAACGTC-AAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGT
*** *
60152434 CCACGAGGGTGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCAGTGATTTTAT
65 CCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCAGTGATTTTAT
*
60152494 ACTATTTGCTCAGAAAACGTC-AAAAAAATTATTTCTTACATGACC-ACTGTAGCGAAATCGCGT
1 ACTATTTGCTCAG-AAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGT
* *
60152557 CCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTGGTA
65 CCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTA
60152604 GAAGCGATTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
123 59 0.58
124 23 0.23
125 13 0.13
126 7 0.07
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (124 bp):
ACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGTC
CACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCAGTGATTTTAT
Found at i:60152613 original size:123 final size:124
Alignment explanation
Indices: 60152359--60152623 Score: 372
Period size: 123 Copynumber: 2.1 Consensus size: 124
60152349 CCACGAGGGC
60152359 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTGCTCAGAAACGTC-AAAAAAAATTATTTCCTACATGACCAACTGTAGC
*** * **
60152424 GAAATCGCGTCCACGAGGGTGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
65 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* * * *
60152484 GTGATTTTATACTATTTGCTCAGAAAACGTC-AAAAAAATTATTTCTTACATGACC-ACTGTAGC
1 GCGATTTGACACTATTTGCTCAG-AAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* *
60152547 GAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTGGTAGAA
65 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
**
60152607 GCGATTTCCCACTATTT
1 GCGATTTGACACTATTT
60152624 AACCAGATAC
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
123 73 0.59
124 23 0.19
125 20 0.16
126 7 0.06
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (124 bp):
GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:60156446 original size:15 final size:16
Alignment explanation
Indices: 60156428--60156458 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60156418 TTTTAACAAA
60156428 AAATT-AAAACAAATG
1 AAATTAAAAACAAATG
60156443 AAATTAAAAACAAATG
1 AAATTAAAAACAAATG
60156459 CGTATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
AAATTAAAAACAAATG
Found at i:60159047 original size:111 final size:113
Alignment explanation
Indices: 60158853--60159146 Score: 376
Period size: 111 Copynumber: 2.5 Consensus size: 113
60158843 GAGCTAGAGC
* ***
60158853 CTTTGTTCCACCCACCAGATTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCAGTGGATTGA
1 CTTTGTTCCAGCCACCAGATTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
**
60158918 TTCCAAGTCTTGGCTCCACCTCCACTTGTTCCACCATT-C-CCCCCCT
66 TTCCAAGTCTTACCTCCACCTCCACTTGTTCCACCATTCCTCCCCCCT
*
60158964 CTTTGTTCCAGCCACCAGACTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
1 CTTTGTTCCAGCCACCAGATTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
*
60159029 TTCCAATTCTTACCTCCACCTCCACTTGTTCCACCATTCCAGCCCTGGTTCCCCCCT
66 TTCCAAGTCTTACCTCCACCTCCACTTGTTCCACCATT-----CC----TCCCCCCT
* *
60159086 CCTTGTTCCAGCCACCAGATTGACTCCAACTGGAGGATTGGCCTCCTCCTTGATCAGCACC
1 CTTTGTTCCAGCCACCAGATTGACTCCAACTAGAGGATTGG---CCTCCTTGATCAGCACC
60159147 TCCACTTGTT
Statistics
Matches: 158, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
111 95 0.60
117 1 0.01
122 45 0.28
125 17 0.11
ACGTcount: A:0.19, C:0.37, G:0.16, T:0.28
Consensus pattern (113 bp):
CTTTGTTCCAGCCACCAGATTGACTCCAACTAGAGGATTGGCCTCCTTGATCAGCACCAGATTGA
TTCCAAGTCTTACCTCCACCTCCACTTGTTCCACCATTCCTCCCCCCT
Found at i:60159340 original size:30 final size:30
Alignment explanation
Indices: 60159304--60159398 Score: 109
Period size: 30 Copynumber: 3.2 Consensus size: 30
60159294 ACCTCTTCCA
* * ** *
60159304 CCTCTACCTCTGTAGCCACCTCTGTCACCT
1 CCTCTACCTCCGTAGCCACCACCATCACCG
* *
60159334 CCTCTACCTCCGAAGCCTCCACCATCACCG
1 CCTCTACCTCCGTAGCCACCACCATCACCG
* *
60159364 CCTCTACCTCCGTAGCCTCCACCATCACCA
1 CCTCTACCTCCGTAGCCACCACCATCACCG
60159394 CCTCT
1 CCTCT
60159399 GCCACCAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.17, C:0.52, G:0.08, T:0.23
Consensus pattern (30 bp):
CCTCTACCTCCGTAGCCACCACCATCACCG
Found at i:60159413 original size:30 final size:30
Alignment explanation
Indices: 60159328--60159413 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 30
60159318 GCCACCTCTG
* * * *
60159328 TCACCTCCTCTACCTCCGAAGCCTCCACCA
1 TCACCACCTCTACCACCAAAACCTCCACCA
* * ** *
60159358 TCACCGCCTCTACCTCCGTAGCCTCCACCA
1 TCACCACCTCTACCACCAAAACCTCCACCA
*
60159388 TCACCACCTCTGCCACCAAAACCTCC
1 TCACCACCTCTACCACCAAAACCTCC
60159414 TCTGTCAGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.21, C:0.53, G:0.07, T:0.19
Consensus pattern (30 bp):
TCACCACCTCTACCACCAAAACCTCCACCA
Found at i:60159884 original size:93 final size:93
Alignment explanation
Indices: 60159718--60159919 Score: 309
Period size: 93 Copynumber: 2.2 Consensus size: 93
60159708 GTTCCAACCA
*
60159718 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCGCAACTTTTCTTACCCCA
1 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCCCAACTTTTCTTACCCCA
*
60159783 GCTTGAATCCTGACTTGCATCTG-TCGAT
66 GCTTGAATCCTGACTTGCATCCGCT-GAT
* * *
60159811 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGCATCATTTCCAGTGCCCCAATTTTTCTTACCCCA
1 CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCCCAACTTTTCTTACCCCA
60159876 G-TTAGAATCCTGACTTGCATCCGCTGAT
66 GCTT-GAATCCTGACTTGCATCCGCTGAT
* *
60159904 CCCTTTTTCCCCCAAC
1 CCTTTTTTGCCCCAAC
60159920 TAGAATCATT
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
92 2 0.02
93 97 0.97
94 1 0.01
ACGTcount: A:0.19, C:0.35, G:0.14, T:0.32
Consensus pattern (93 bp):
CCTTTTTTGCCCCAACCAGAGTCTTGGCCAGAATCATTTCCAGTACCCCAACTTTTCTTACCCCA
GCTTGAATCCTGACTTGCATCCGCTGAT
Found at i:60173064 original size:17 final size:17
Alignment explanation
Indices: 60173038--60173074 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
60173028 TGTTTGACTG
60173038 AAAATGATTTTTTTTAAA
1 AAAATGA-TTTTTTTAAA
60173056 AAAAT-ATTTTTTTAAA
1 AAAATGATTTTTTTAAA
60173072 AAA
1 AAA
60173075 TTAAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.68
17 1 0.05
18 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
AAAATGATTTTTTTAAA
Found at i:60177892 original size:31 final size:31
Alignment explanation
Indices: 60177854--60177919 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 31
60177844 AACAACCCAT
60177854 TGACTTAAATAAAAACTTTT-AAATAGTTTAG
1 TGACTTAAATAAAAA-TTTTCAAATAGTTTAG
*
60177885 TGACTTAAATGAAAATTTTCAAATAGTTTAG
1 TGACTTAAATAAAAATTTTCAAATAGTTTAG
60177916 TGAC
1 TGAC
60177920 CAAAATGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 4 0.12
31 29 0.88
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (31 bp):
TGACTTAAATAAAAATTTTCAAATAGTTTAG
Found at i:60177926 original size:31 final size:31
Alignment explanation
Indices: 60177860--60177926 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
60177850 CCATTGACTT
* **
60177860 AAATAAAAACTTTTAAATAGTTTAGTGACTT
1 AAATGAAAACTTTTAAATAGTTTAGTGACCA
60177891 AAATGAAAA-TTTTCAAATAGTTTAGTGACCA
1 AAATGAAAACTTTT-AAATAGTTTAGTGACCA
60177922 AAATG
1 AAATG
60177927 TAACGTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (31 bp):
AAATGAAAACTTTTAAATAGTTTAGTGACCA
Found at i:60179453 original size:25 final size:25
Alignment explanation
Indices: 60179407--60179455 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
60179397 AATATATATT
*
60179407 TAATATATAATTCAGATTAAAAGTC
1 TAATATATAATTCAGATAAAAAGTC
*
60179432 TAATATATATATTTA-ATAAAAAGT
1 TAATATATA-ATTCAGATAAAAAGT
60179456 ATATTTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (25 bp):
TAATATATAATTCAGATAAAAAGTC
Found at i:60187956 original size:12 final size:13
Alignment explanation
Indices: 60187931--60187955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60187921 CAAAAATTCA
60187931 AAAAATTATTTTT
1 AAAAATTATTTTT
60187944 AAAAATTATTTT
1 AAAAATTATTTT
60187956 ATTTTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAAATTATTTTT
Found at i:60192268 original size:67 final size:66
Alignment explanation
Indices: 60192104--60192339 Score: 314
Period size: 67 Copynumber: 3.6 Consensus size: 66
60192094 TTGATTTATT
* * *
60192104 TATTGAATTTTCATTCTTTTATGAACTTCAATTATTTGCATATATTTGCATTATG--TTATTTTT
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATGTTTTGTTTTT
60192167 C
66 C
*
60192168 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACTTATATTTGCATTATGTTTCTGTTTT
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATGTTT-TGTTTT
60192233 TC
65 TC
* * * * * *
60192235 TATTGAATTTTCATTCTTGTATCAATTTAAATTATTTAAATATATCTGTATTATGTTTTTGTTTT
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATG-TTTTGTTTT
60192300 TC
65 TC
* * * *
60192302 TATTGAGTTTTCACTCTTATATAAACTTCAATTATTTA
1 TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTA
60192340 GATAAACTTG
Statistics
Matches: 151, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
64 52 0.34
66 1 0.01
67 95 0.63
68 3 0.02
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.56
Consensus pattern (66 bp):
TATTGAATTTTCATTCTTGTATGAACTTCAATTATTTACATATATTTGCATTATGTTTTGTTTTT
C
Found at i:60198862 original size:19 final size:18
Alignment explanation
Indices: 60198814--60198865 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
60198804 AAAAATATTA
*
60198814 TTAAAAA-ATAATTTAAC
1 TTAAAAATATAATTAAAC
* *
60198831 -TAATAATAAAATTAATAC
1 TTAAAAATATAATTAA-AC
60198849 TTAAAAATATAATTAAA
1 TTAAAAATATAATTAAA
60198866 ATAAAATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
16 5 0.19
17 6 0.22
18 3 0.11
19 13 0.48
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAAATATAATTAAAC
Found at i:60207599 original size:22 final size:22
Alignment explanation
Indices: 60207552--60207604 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
60207542 AAAGAAAGGA
60207552 AAAATTGTAAAGAGAAATAGAGG
1 AAAATTG-AAAGAGAAATAGAGG
*
60207575 -AAATTGAAAGA-AAGATTGAGAG
1 AAAATTGAAAGAGAA-ATAGAG-G
60207597 AAAATTGA
1 AAAATTGA
60207605 GAGGGGGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.08
21 10 0.38
22 7 0.27
23 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.25, T:0.19
Consensus pattern (22 bp):
AAAATTGAAAGAGAAATAGAGG
Found at i:60210724 original size:19 final size:20
Alignment explanation
Indices: 60210687--60210725 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
60210677 GTTATTTTTC
* *
60210687 GAAAAATTAATTTTGATCAA
1 GAAAAATTAATATTAATCAA
60210707 GAAAAATTAA-ATTAATCAA
1 GAAAAATTAATATTAATCAA
60210726 ATCAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
GAAAAATTAATATTAATCAA
Found at i:60211092 original size:19 final size:17
Alignment explanation
Indices: 60211077--60211167 Score: 66
Period size: 17 Copynumber: 5.4 Consensus size: 17
60211067 ATTTTAATAT
60211077 TTTAATATTAAATTAAA
1 TTTAATATTAAATTAAA
60211094 TTTAATACTT--ATCTAAA
1 TTTAATA-TTAAAT-TAAA
* **
60211111 --TAGTATTTTATT-AA
1 TTTAATATTAAATTAAA
*
60211125 TTTAATATTAAATTGATTA
1 TTTAATATTAAATT-A-AA
60211144 TCTTAATATTAAATTAAA
1 T-TTAATATTAAATTAAA
60211162 TTTAAT
1 TTTAAT
60211168 GTTTATCTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
14 4 0.07
15 5 0.09
16 13 0.22
17 16 0.28
18 4 0.07
19 3 0.05
20 13 0.22
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATATTAAATTAAA
Found at i:60214864 original size:20 final size:20
Alignment explanation
Indices: 60214839--60214878 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60214829 GAATGTAACA
* *
60214839 ATTAAATTAAAAATAGAAAT
1 ATTAAAATAAAAATAAAAAT
60214859 ATTAAAATAAAAATAAAAAT
1 ATTAAAATAAAAATAAAAAT
60214879 GGCTAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (20 bp):
ATTAAAATAAAAATAAAAAT
Found at i:60216831 original size:3 final size:3
Alignment explanation
Indices: 60216825--60216851 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
60216815 TATTGTGTTA
60216825 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
60216852 AATATTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:60221485 original size:90 final size:90
Alignment explanation
Indices: 60221289--60221491 Score: 232
Period size: 90 Copynumber: 2.2 Consensus size: 90
60221279 GTTGTGGGTA
* * ***
60221289 AACCACAAAAATTGCAGGTTAATACACTGTTAGATGGTTGTGAATACACTAACATAATTACAGAT
1 AACCACCAGAATTGCAGGTTAATACACTACCAGATGGTTGTGAATACACTAACATAATTACAGAT
*
60221354 TAAAGCTGCCAGATAATGGATGGGCG
66 CAAAGCTGCCAGATAAT-GATGGGCG
** * * *
60221380 AACCACCAGTGTTGCAGGTTAATACGCTACCAGATGGTTTTGAATACAC-AACATAATTGCAGA-
1 AACCACCAGAATTGCAGGTTAATACACTACCAGATGGTTGTGAATACACTAACATAATTACAGAT
*
60221443 CAATAGCTGCCAGATAAT-ATGTGGATG
66 CAA-AGCTGCCAGATAATGATG-GG-CG
*
60221470 AACCACCAGAATTGCAGATTAA
1 AACCACCAGAATTGCAGGTTAA
60221492 GAATCTGCCA
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
88 3 0.03
89 4 0.04
90 47 0.50
91 40 0.43
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (90 bp):
AACCACCAGAATTGCAGGTTAATACACTACCAGATGGTTGTGAATACACTAACATAATTACAGAT
CAAAGCTGCCAGATAATGATGGGCG
Found at i:60230939 original size:7 final size:7
Alignment explanation
Indices: 60230924--60230953 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
60230914 TAAATTATAT
*
60230924 TAATATA
1 TAATTTA
60230931 TAATTTA
1 TAATTTA
60230938 TAATTTA
1 TAATTTA
60230945 TAATTTA
1 TAATTTA
60230952 TA
1 TA
60230954 GTAAGGCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
TAATTTA
Found at i:60231088 original size:16 final size:16
Alignment explanation
Indices: 60231067--60231099 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60231057 TTCGCTGTAT
60231067 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
60231083 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
60231099 T
1 T
60231100 AACAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:60231306 original size:16 final size:16
Alignment explanation
Indices: 60231269--60231310 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
60231259 TTAATCATAT
*
60231269 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
60231285 TT-AAATATATTATAA
1 TTAAAATATATTATAA
60231300 TTAAAATATAT
1 TTAAAATATAT
60231311 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:60231317 original size:14 final size:15
Alignment explanation
Indices: 60231278--60231319 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
60231268 TTTAAACATA
*
60231278 ATTATTATTAAATAT
1 ATTATAATTAAATAT
60231293 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
60231307 A-TATAATTTAATA
1 ATTATAATTAAATA
60231320 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:60231369 original size:61 final size:61
Alignment explanation
Indices: 60231304--60231491 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
60231294 TTATAATTAA
60231304 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
60231365 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
60231424 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
60231485 AATATAT
1 AATATAT
60231492 GATACTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 23 0.24
61 37 0.39
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:60231417 original size:120 final size:121
Alignment explanation
Indices: 60231272--60231564 Score: 518
Period size: 120 Copynumber: 2.4 Consensus size: 121
60231262 ATCATATTTA
60231272 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
60231337 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
*
60231392 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
60231457 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* * *
60231513 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
60231565 TAAAATAATT
Statistics
Matches: 166, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
120 164 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:60231437 original size:14 final size:15
Alignment explanation
Indices: 60231388--60231439 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
60231378 ATAAAATATA
60231388 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
60231403 TATTAAATATATTAT
1 AATTAAATATATTAT
60231418 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
60231431 AATTTAATA
1 AATTAAATA
60231440 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:60231675 original size:91 final size:90
Alignment explanation
Indices: 60231580--60231787 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 90
60231570 TAATTATAAC
* * * * *
60231580 TAATAAATTATCTTATATGAATTTGTATAATTTAAAGTAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
60231645 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
60231671 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
60231736 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
60231762 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
60231788 CTAAATCAAA
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
91 86 0.80
92 21 0.20
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:60231747 original size:44 final size:43
Alignment explanation
Indices: 60231605--60231747 Score: 110
Period size: 44 Copynumber: 3.2 Consensus size: 43
60231595 TATGAATTTG
* * *
60231605 TATAATTTAAAGTAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
60231649 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
60231696 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
60231740 TATAATTT
1 TATAATTT
60231748 CATAAAATTC
Statistics
Matches: 73, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.44
45 7 0.10
46 7 0.10
47 21 0.29
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:60231762 original size:47 final size:47
Alignment explanation
Indices: 60231630--60231768 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
60231620 TTATTATTAC
* *
60231630 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
60231677 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
60231721 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
60231768 A
1 A
60231769 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:60235054 original size:6 final size:6
Alignment explanation
Indices: 60235043--60235068 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
60235033 TAGTTTGAAC
60235043 ATTTAA ATTTAA ATTTAA ATTTAA AT
1 ATTTAA ATTTAA ATTTAA ATTTAA AT
60235069 ATAATTTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTTAA
Found at i:60235184 original size:17 final size:17
Alignment explanation
Indices: 60235153--60235191 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
60235143 ATGATTAGTT
60235153 TAATT-AAGATTGAACA
1 TAATTAAAGATTGAACA
*
60235169 TAATTAAAGGTTGAACA
1 TAATTAAAGATTGAACA
60235186 TAATTA
1 TAATTA
60235192 TTATTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (17 bp):
TAATTAAAGATTGAACA
Found at i:60235585 original size:12 final size:12
Alignment explanation
Indices: 60235568--60235592 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60235558 AATATGTTTT
60235568 CATAATTTTAAC
1 CATAATTTTAAC
60235580 CATAATTTTAAC
1 CATAATTTTAAC
60235592 C
1 C
60235593 CAGATAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (12 bp):
CATAATTTTAAC
Found at i:60240374 original size:34 final size:34
Alignment explanation
Indices: 60240313--60240377 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
60240303 GGTTGTTAAT
**
60240313 AGTTCGATACAGTGGCAAATGTTATGCTTATGAC
1 AGTTCGATACAGTGGCAAATGGCATGCTTATGAC
*
60240347 AGTTCGTTACAGTGGCCAAA-GGCATGCTTAT
1 AGTTCGATACAGTGG-CAAATGGCATGCTTAT
60240378 CATGCGTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 23 0.85
35 4 0.15
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (34 bp):
AGTTCGATACAGTGGCAAATGGCATGCTTATGAC
Found at i:60242371 original size:13 final size:13
Alignment explanation
Indices: 60242341--60242365 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60242331 CTAAATCATA
60242341 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
60242354 ATTTTAGTAAAA
1 ATTTTAGTAAAA
60242366 ACTTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Done.