Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 216 of 228
Found at i:63217964 original size:36 final size:36
Alignment explanation
Indices: 63217924--63218054 Score: 138
Period size: 36 Copynumber: 3.6 Consensus size: 36
63217914 AATAGAAGTG
*
63217924 ATAATTACAAATTTAAAAATAAATAGAATTTAAATT
1 ATAATTATAAATTTAAAAATAAATAGAATTTAAATT
* * * * *
63217960 ATAATTATTAA-TTAAAAATTTGAAATAAAATTGAAGTG
1 ATAATTATAAATTTAAAAA--T-AAATAGAATTTAAATT
*
63217998 ATAATTATAGATTTAAAAATAAATAGAATTTAAATT
1 ATAATTATAAATTTAAAAATAAATAGAATTTAAATT
* * *
63218034 ATATTTATTAATTAAAAAATA
1 ATAATTATAAATTTAAAAATA
63218055 CATGTTAATT
Statistics
Matches: 75, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
35 7 0.09
36 38 0.51
37 2 0.03
38 21 0.28
39 7 0.09
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.38
Consensus pattern (36 bp):
ATAATTATAAATTTAAAAATAAATAGAATTTAAATT
Found at i:63217986 original size:74 final size:74
Alignment explanation
Indices: 63217858--63218051 Score: 280
Period size: 74 Copynumber: 2.6 Consensus size: 74
63217848 TTAAATTCAC
* * * *
63217858 ATTTAAAAATAATTATAATGTTTAATTTAGAATTATTAATTAAAAAGTTAAAATAAAATAGAAGT
1 ATTTAAAAATAAATAGAA--TTTAAATTATAATTATTAATTAAAAAGTTAAAATAAAATAGAAGT
63217923 GATAATTACAA
64 GATAATTACAA
* * *
63217934 ATTTAAAAATAAATAGAATTTAAATTATAATTATTAATTAAAAATTTGAAATAAAATTGAAGTGA
1 ATTTAAAAATAAATAGAATTTAAATTATAATTATTAATTAAAAAGTTAAAATAAAATAGAAGTGA
* *
63217999 TAATTATAG
66 TAATTACAA
*
63218008 ATTTAAAAATAAATAGAATTTAAATTATATTTATTAATTAAAAA
1 ATTTAAAAATAAATAGAATTTAAATTATAATTATTAATTAAAAA
63218052 ATACATGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
74 92 0.85
76 16 0.15
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.38
Consensus pattern (74 bp):
ATTTAAAAATAAATAGAATTTAAATTATAATTATTAATTAAAAAGTTAAAATAAAATAGAAGTGA
TAATTACAA
Found at i:63223249 original size:28 final size:28
Alignment explanation
Indices: 63223202--63223271 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
63223192 TTCAGAGAAA
* * *
63223202 AATTTT-AA-AAAAAATTAAGAATTGAG
1 AATTTTGAATAAAAAATCAAGAATTAAC
63223228 AATTTTGAATAAAAAATCAAGAATTAAC
1 AATTTTGAATAAAAAATCAAGAATTAAC
**
63223256 AATTGAGAATAAAAAA
1 AATTTTGAATAAAAAA
63223272 AATTTGAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.16
27 2 0.05
28 29 0.78
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (28 bp):
AATTTTGAATAAAAAATCAAGAATTAAC
Found at i:63225500 original size:17 final size:17
Alignment explanation
Indices: 63225464--63225501 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
63225454 ATCATCGGTT
*
63225464 AAATTTTAAATTTACCA
1 AAATTTTAAATTTACAA
*
63225481 AAATTTTAAATTTAGAA
1 AAATTTTAAATTTACAA
63225498 AAAT
1 AAAT
63225502 ATATCATAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (17 bp):
AAATTTTAAATTTACAA
Found at i:63238144 original size:23 final size:22
Alignment explanation
Indices: 63238104--63238147 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
63238094 TTTAAAAAAT
63238104 ATATTTATATTATATTATTTTA
1 ATATTTATATTATATTATTTTA
* *
63238126 ATATTTAATATTTTTTTATTTT
1 ATATTT-ATATTATATTATTTT
63238148 TTGAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
ATATTTATATTATATTATTTTA
Found at i:63239503 original size:7 final size:7
Alignment explanation
Indices: 63239491--63239520 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
63239481 AAAGTCAATT
63239491 ATTTAAA
1 ATTTAAA
63239498 ATTTAAA
1 ATTTAAA
63239505 ATTTAAA
1 ATTTAAA
63239512 ATTTAAA
1 ATTTAAA
63239519 AT
1 AT
63239521 AGATAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATTTAAA
Found at i:63240667 original size:18 final size:18
Alignment explanation
Indices: 63240612--63240667 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
63240602 GATAAAAATG
* *
63240612 ATTATTTTATAAAATAAA
1 ATTATTTCATTAAATAAA
* *
63240630 CTTAATTTCTTCTAAA-AAA
1 ATT-ATTTCAT-TAAATAAA
63240649 ATTATTTCATTAAATAAA
1 ATTATTTCATTAAATAAA
63240667 A
1 A
63240668 ATTCTAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
17 4 0.14
18 12 0.41
19 10 0.34
20 3 0.10
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTATTTCATTAAATAAA
Found at i:63246762 original size:366 final size:366
Alignment explanation
Indices: 63246090--63246823 Score: 1459
Period size: 366 Copynumber: 2.0 Consensus size: 366
63246080 AAGCTTGTTT
63246090 AACTGGTCCAAACACATAAGAGTGGACCAACTCTAATGGTTTCTTCGCTTTAAATTTGGACTCTT
1 AACTGGTCCAAACACATAAGAGTGGACCAACTCTAATGGTTTCTTCGCTTTAAATTTGGACTCTT
63246155 CGTACGGTAACTGGTGTGCTTTTCCATTCTGACAGCCTGCACACACAGTGTCTTTTCTCACTTCA
66 CGTACGGTAACTGGTGTGCTTTTCCATTCTGACAGCCTGCACACACAGTGTCTTTTCTCACTTCA
63246220 AGTTGTGGAAGTCCCTTCAACATTGAGCTCTTCATCATCACATCTAATTTGGAATAGCTAACGTG
131 AGTTGTGGAAGTCCCTTCAACATTGAGCTCTTCATCATCACATCTAATTTGGAATAGCTAACGTG
63246285 ACCTAGCCGCATTTGCCACACATCTGTCATTTCATTCCTTCTTGTCTTGTCTACGTATGCGGTTT
196 ACCTAGCCGCATTTGCCACACATCTGTCATTTCATTCCTTCTTGTCTTGTCTACGTATGCGGTTT
63246350 CTGCAGACATTACATAGACTGATTCCAACCTCTGTCCCTTCATCACTGGTTCTTCTATAACTTCA
261 CTGCAGACATTACATAGACTGATTCCAACCTCTGTCCCTTCATCACTGGTTCTTCTATAACTTCA
63246415 GGTTCTGATACACCTTTACATCTTGTGGACCAAAGAGAACA
326 GGTTCTGATACACCTTTACATCTTGTGGACCAAAGAGAACA
*
63246456 AACTGGTCCAAACACATCAGAGTGGACCAACTCTAATGGTTTCTTCGCTTTAAATTTGGACTCTT
1 AACTGGTCCAAACACATAAGAGTGGACCAACTCTAATGGTTTCTTCGCTTTAAATTTGGACTCTT
63246521 CGTACGGTAACTGGTGTGCTTTTCCATTCTGACAGCCTGCACACACAGTGTCTTTTCTCACTTCA
66 CGTACGGTAACTGGTGTGCTTTTCCATTCTGACAGCCTGCACACACAGTGTCTTTTCTCACTTCA
63246586 AGTTGTGGAAGTCCCTTCAACATTGAGCTCTTCATCATCACATCTAATTTGGAATAGCTAACGTG
131 AGTTGTGGAAGTCCCTTCAACATTGAGCTCTTCATCATCACATCTAATTTGGAATAGCTAACGTG
63246651 ACCTAGCCGCATTTGCCACACATCTGTCATTTCATTCCTTCTTGTCTTGTCTACGTATGCGGTTT
196 ACCTAGCCGCATTTGCCACACATCTGTCATTTCATTCCTTCTTGTCTTGTCTACGTATGCGGTTT
63246716 CTGCAGACATTACATAGACTGATTCCAACCTCTGTCCCTTCATCACTGGTTCTTCTATAACTTCA
261 CTGCAGACATTACATAGACTGATTCCAACCTCTGTCCCTTCATCACTGGTTCTTCTATAACTTCA
63246781 GGTTCTGATACACCTTTACATCTTGTGGACCAAAGAGAACA
326 GGTTCTGATACACCTTTACATCTTGTGGACCAAAGAGAACA
63246822 AA
1 AA
63246824 ATGGCTAGAA
Statistics
Matches: 367, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
366 367 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (366 bp):
AACTGGTCCAAACACATAAGAGTGGACCAACTCTAATGGTTTCTTCGCTTTAAATTTGGACTCTT
CGTACGGTAACTGGTGTGCTTTTCCATTCTGACAGCCTGCACACACAGTGTCTTTTCTCACTTCA
AGTTGTGGAAGTCCCTTCAACATTGAGCTCTTCATCATCACATCTAATTTGGAATAGCTAACGTG
ACCTAGCCGCATTTGCCACACATCTGTCATTTCATTCCTTCTTGTCTTGTCTACGTATGCGGTTT
CTGCAGACATTACATAGACTGATTCCAACCTCTGTCCCTTCATCACTGGTTCTTCTATAACTTCA
GGTTCTGATACACCTTTACATCTTGTGGACCAAAGAGAACA
Found at i:63258564 original size:5 final size:5
Alignment explanation
Indices: 63258554--63258582 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
63258544 GCATGCTTGG
63258554 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
63258583 CCCAATTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:63258757 original size:14 final size:15
Alignment explanation
Indices: 63258732--63258761 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
63258722 TTTAATCTAA
63258732 ATTTTAAATTGATTT
1 ATTTTAAATTGATTT
63258747 ATTTT-AATTGATTT
1 ATTTTAAATTGATTT
63258761 A
1 A
63258762 AGTCTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
ATTTTAAATTGATTT
Found at i:63262695 original size:19 final size:19
Alignment explanation
Indices: 63262673--63262711 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
63262663 GAAGCTCATC
*
63262673 TTTCGAATTAAACCGAGTT
1 TTTCGAAATAAACCGAGTT
*
63262692 TTTCGAAATAAATCGAGTT
1 TTTCGAAATAAACCGAGTT
63262711 T
1 T
63262712 AGACAACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTCGAAATAAACCGAGTT
Found at i:63266100 original size:14 final size:15
Alignment explanation
Indices: 63266075--63266103 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63266065 GCAAAATTAA
63266075 TAACACAATTTAACT
1 TAACACAATTTAACT
63266090 TAACA-AATTTAACT
1 TAACACAATTTAACT
63266104 ATTACCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (15 bp):
TAACACAATTTAACT
Found at i:63268787 original size:33 final size:33
Alignment explanation
Indices: 63268760--63268839 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
63268750 TCCTCTTCAT
* *
63268760 TAGAGTCTCCTTCTTCCACTAGATCCTCCCTAC
1 TAGAGTCTCCTTCTTCCACTAAATCCTCTCTAC
* * *
63268793 TAGAGTCTCATTCTTTCATTAAATCCTCTCTAC
1 TAGAGTCTCCTTCTTCCACTAAATCCTCTCTAC
*
63268826 TAAAGTCTCCTTCT
1 TAGAGTCTCCTTCT
63268840 AGCATAAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.21, C:0.33, G:0.07, T:0.39
Consensus pattern (33 bp):
TAGAGTCTCCTTCTTCCACTAAATCCTCTCTAC
Found at i:63287088 original size:19 final size:19
Alignment explanation
Indices: 63287045--63287128 Score: 80
Period size: 19 Copynumber: 4.1 Consensus size: 19
63287035 ATTACAAAAC
63287045 AATTCAAAATAATTTTTCAAA
1 AATTCAAAATAATTTTT--AA
*
63287066 AATTTAAAATAATTTTTAA
1 AATTCAAAATAATTTTTAA
*
63287085 AATTCAAAAT-ATTTATAAA
1 AATTCAAAATAATTT-TTAA
63287104 AATTCCAAAACTTATATTTTTAA
1 AATT-CAAAA--TA-ATTTTTAA
63287127 AA
1 AA
63287129 AATTATAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 4 0.08
19 18 0.34
20 5 0.09
21 16 0.30
22 1 0.02
23 5 0.09
24 4 0.08
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTCAAAATAATTTTTAA
Found at i:63292733 original size:15 final size:15
Alignment explanation
Indices: 63292713--63292743 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63292703 TCTGGTCACC
*
63292713 TGTTTGAAAATTTGT
1 TGTTTGAAAACTTGT
63292728 TGTTTGAAAACTTGT
1 TGTTTGAAAACTTGT
63292743 T
1 T
63292744 TGAAGACCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (15 bp):
TGTTTGAAAACTTGT
Found at i:63303716 original size:3 final size:3
Alignment explanation
Indices: 63303708--63303751 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
63303698 AAAAGAAAGA
63303708 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63303752 CAACGTGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63305071 original size:36 final size:36
Alignment explanation
Indices: 63305024--63305094 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
63305014 ACATAGACAA
*
63305024 AAGCGTTAGTCCCGTAATGCGGAGAAACGATGAATT
1 AAGCGTCAGTCCCGTAATGCGGAGAAACGATGAATT
63305060 AAGCGTCAGTCCCGTAATGCGGAGAAACGATGAAT
1 AAGCGTCAGTCCCGTAATGCGGAGAAACGATGAAT
63305095 ACTCGTTGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (36 bp):
AAGCGTCAGTCCCGTAATGCGGAGAAACGATGAATT
Found at i:63306676 original size:11 final size:11
Alignment explanation
Indices: 63306660--63306694 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
63306650 AAATGAGATT
63306660 TTATTATTTTA
1 TTATTATTTTA
63306671 TTATTATTTTA
1 TTATTATTTTA
63306682 TTATTATTTTA
1 TTATTATTTTA
63306693 TT
1 TT
63306695 TAATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:63312196 original size:18 final size:18
Alignment explanation
Indices: 63312159--63312201 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
63312149 GAAAACATCA
* *
63312159 TTCAACCCAAACAATGAT
1 TTCAAACCAAACAATAAT
*
63312177 TTCAAACCAAACATTAAT
1 TTCAAACCAAACAATAAT
*
63312195 TTTAAAC
1 TTCAAAC
63312202 TAGGATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (18 bp):
TTCAAACCAAACAATAAT
Found at i:63323795 original size:44 final size:43
Alignment explanation
Indices: 63323724--63324147 Score: 231
Period size: 44 Copynumber: 9.8 Consensus size: 43
63323714 ATCTGAAACG
* * * * * *
63323724 ATCTACTCTACTGTAACCTTAGAGAGATAAGATCATTTATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCATTT-CTTTA
* * * * ** *
63323768 ATCCGTTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCA-TTTCTTTA
* * * * *
63323812 ATCTACTCCGCTGTAATCTCAGGGAAATAAGATCTGAAATTCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC---ATTTCTTTA
* *
63323858 GTCTGCTCCACTGTAATCTCAGGGAGATAAGATC-TCTTATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCAT-TT-CTTTA
* * * **
63323902 ATCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT-AGTGTCTTCG
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCA-TTTCTTTA
* * *
63323945 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC---ATTTCTTTA
* * * ** * *
63323991 GTCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCATTTCTTTA
* * *
63324032 ATCTTCTCTACTGTAA-CTTCAGAGAGATAAGATC----CTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCATTTCTTTA
* * * * * * *
63324071 ATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCA-TTTCTTTA
*
63324115 ATCTGCTCCGCTGTAATCTCA-GGAGATAAGATC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC
63324148 TCTGGCTTCA
Statistics
Matches: 284, Mismatches: 74, Indels: 45
0.70 0.18 0.11
Matches are distributed among these distances:
39 26 0.09
40 2 0.01
41 29 0.10
42 1 0.00
43 43 0.15
44 111 0.39
45 3 0.01
46 67 0.24
47 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (43 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCATTTCTTTA
Found at i:63323976 original size:87 final size:85
Alignment explanation
Indices: 63323774--63324150 Score: 281
Period size: 87 Copynumber: 4.4 Consensus size: 85
63323764 TTTAATCCGT
* * * ** * *
63323774 TCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAA
1 TCCACTGTAATCTCAGGGAGATAAGATCT-CTA-TTTTAATCCGCTCCACTGTAATCTCAGGGAG
* *
63323838 ATAAGAT-CTGAAATTCTTTGGTCTGC
64 ATAGGATACTG----TC-TTGATCTGC
63323864 TCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAG
1 TCCACTGTAATCTCAGGGAGATAAGATCTC-TATTTTAATCCGCTCCACTGTAATC-TCAGGGAG
*
63323928 ATAGGATAGTGTCTTCGATCTGC
64 ATAGGATACTGTCTT-GATCTGC
* ** ** * *
63323951 TCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGA
1 TCCACTGTAATCTCAGGGAGATAAGATCT-CTA-T-TTTAATCCGCTCCACTGTAATCTCAGGGA
* * * *
63324016 GATAAGA-CCTGAT-GTGATCTTC
63 GATAGGATACTG-TCTTGATCTGC
* * * *
63324038 TCTACTGTAA-CTTCAGAGAGATAAGATC-C---TTTAATCCGCTCCATTGTAATCTCAAGGAGA
1 TCCACTGTAATC-TCAGGGAGATAAGATCTCTATTTTAATCCGCTCCACTGTAATCTCAGGGAGA
*
63324098 TAGGATTACTATCTTTGATCTGC
65 TAGGA-TACTGTC-TTGATCTGC
*
63324121 TCCGCTGTAATCTCA-GGAGATAAGATCTCT
1 TCCACTGTAATCTCAGGGAGATAAGATCTCT
63324151 GGCTTCATCT
Statistics
Matches: 229, Mismatches: 40, Indels: 42
0.74 0.13 0.14
Matches are distributed among these distances:
80 29 0.13
81 1 0.00
82 13 0.06
83 19 0.08
84 1 0.00
86 3 0.01
87 66 0.29
88 4 0.02
89 31 0.14
90 57 0.25
91 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (85 bp):
TCCACTGTAATCTCAGGGAGATAAGATCTCTATTTTAATCCGCTCCACTGTAATCTCAGGGAGAT
AGGATACTGTCTTGATCTGC
Found at i:63324007 original size:133 final size:134
Alignment explanation
Indices: 63323733--63324022 Score: 444
Period size: 133 Copynumber: 2.2 Consensus size: 134
63323723 GATCTACTCT
* * * *
63323733 ACTGTAACCTTAGAGAGATAAGATCATTTATTTTAATCCGTTCCACTGTAATCTCAGGGAGATAG
1 ACTGTAATCTCAGGGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAG
63323798 GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAAATAAGATCTGAAATTCTTTGGTCTG
66 GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAAATAAGATCTGAAATTCTTTGGTCTG
63323863 CTCC
131 CTCC
63323867 ACTGTAATCTCAGGGAGATAAGATC-TCTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGAT
1 ACTGTAATCTCAGGGAGATAAGATCAT-TTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGAT
* * * *
63323930 AGGA-TAGT-GTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGT
64 AGGATTACTAG-CTTCAATCTACTCCGCTGTAATCTCAGGGAAATAAGATCTGAAATTCTTTGGT
*
63323993 CTGTTCC
128 CTGCTCC
63324000 ACTGTAATCTCAGGGAGATAAGA
1 ACTGTAATCTCAGGGAGATAAGA
63324023 CCTGATGTGA
Statistics
Matches: 144, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
132 1 0.01
133 84 0.58
134 59 0.41
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (134 bp):
ACTGTAATCTCAGGGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAG
GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAAATAAGATCTGAAATTCTTTGGTCTG
CTCC
Found at i:63324220 original size:82 final size:84
Alignment explanation
Indices: 63324112--63324490 Score: 279
Period size: 87 Copynumber: 4.4 Consensus size: 84
63324102 ATTACTATCT
* * * *
63324112 TTGATCTGCTCCGCTG-TAATCTCAGG-AGATAAGATCT-CTGGCTTCATCT-GCTCCAATGCAA
1 TTGATCTGCTTCGCTGTTAAT-GCAGGAAG-GAAGATCTGCT-GCTTCAACTAGCTCCAATGCAA
63324173 CCGATGGAGGCAA-GCTTTGTC
63 CCGATGGAGGCAAGGCTTTGTC
* * * * *
63324194 TTGATCTGCTTCGCTGTTAATGCAGGAAGGCAGATCTGCTTCTTTAACTAGCTCCACTGCAATCG
1 TTGATCTGCTTCGCTGTTAATGCAGGAAGGAAGATCTGCTGCTTCAACTAGCTCCAATGCAACCG
* *
63324259 ATGGATGCAAGGCTTTGTT
66 ATGGAGGCAAGGCTTTGTC
* ** * * *
63324278 TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCT-CTATCACA
1 TT-GATCTGCTTCGCTGTTAATGCAGGAAGG-AAGATCTGCTG-CTTCAACTAGCTCCAAT-GCA
** *
63324342 ACCGAAAGAGGCAAGGTTTGTGTC
62 ACCGATGGAGGCAAGGCTT-TGTC
* * ** * *
63324366 TTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCT-CTAT-CAC
1 TT-GATCTGCTTCGCTGTTAATGCAGGAAGG-AAGATCTGCTG-CTTCAACTAGCTCCAATGCA-
* ** *
63324429 AACGAAAGAGGCAAGGTTTGTGTC
62 ACCGATGGAGGCAAGGCTT-TGTC
* * *
63324453 TTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAGATCT
1 TT-GATCTGCTTCGCTGTTAATGCAGGAAGGAAGATCT
63324491 TTTGTCTTCA
Statistics
Matches: 256, Mismatches: 30, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
82 31 0.12
83 30 0.12
84 9 0.04
85 27 0.11
86 17 0.07
87 80 0.31
88 62 0.24
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (84 bp):
TTGATCTGCTTCGCTGTTAATGCAGGAAGGAAGATCTGCTGCTTCAACTAGCTCCAATGCAACCG
ATGGAGGCAAGGCTTTGTC
Found at i:63324354 original size:44 final size:43
Alignment explanation
Indices: 63324306--63324443 Score: 134
Period size: 44 Copynumber: 3.2 Consensus size: 43
63324296 TAATGTAGGA
63324306 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAA-CGAAAG
* * * * * ** ** * * *
63324350 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGG
1 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTATCACAACGAAAG
63324393 AAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACGAAAG
1 -AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACGAAAG
63324437 AGGCAAG
1 AGGCAAG
63324444 GTTTGTGTCT
Statistics
Matches: 67, Mismatches: 24, Indels: 7
0.68 0.24 0.07
Matches are distributed among these distances:
43 23 0.34
44 31 0.46
45 13 0.19
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (43 bp):
AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACGAAAG
Found at i:63324477 original size:87 final size:86
Alignment explanation
Indices: 63324190--63324500 Score: 425
Period size: 87 Copynumber: 3.6 Consensus size: 86
63324180 AGGCAAGCTT
* * ** * * *
63324190 TGTCTT-GATCTGCTTCGCTGTTAATGCAGGAAGGCAGATCTGCT-TCTTTAACTAGCTCCACTG
1 TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAGATCTTTTGTCTTCAACCAGCTCTA-T-
* ** *
63324253 CA-ATCGATGGATGCAAGGCTTTG
64 CACAACGAAAGAGGCAAGG-TTTG
*
63324276 T-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATC
1 TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGC-AGATCTTTTGTCTTCAACCAGCTCTATC
63324339 ACAACCGAAAGAGGCAAGGTTTG
65 ACAA-CGAAAGAGGCAAGGTTTG
63324362 TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATC
1 TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGC-AGATCTTTTGTCTTCAACCAGCTCTATC
63324427 ACAACGAAAGAGGCAAGGTTTG
65 ACAACGAAAGAGGCAAGGTTTG
63324449 TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAGATCTTTTGTCTTCA
1 TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAGATCTTTTGTCTTCA
63324501 TTGATCTGTC
Statistics
Matches: 207, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
84 2 0.01
85 31 0.15
86 31 0.15
87 79 0.38
88 64 0.31
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (86 bp):
TGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAGATCTTTTGTCTTCAACCAGCTCTATCA
CAACGAAAGAGGCAAGGTTTG
Found at i:63326656 original size:7 final size:8
Alignment explanation
Indices: 63326632--63326660 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
63326622 CTATTTTGAC
63326632 TTTGATTT
1 TTTGATTT
63326640 TTTGATTT
1 TTTGATTT
63326648 TTTGATTT
1 TTTGATTT
63326656 TTTGA
1 TTTGA
63326661 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (8 bp):
TTTGATTT
Found at i:63329224 original size:19 final size:20
Alignment explanation
Indices: 63329195--63329243 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
63329185 CACTTCGTGA
* *
63329195 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
63329214 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
63329234 AAATG-AATGC
1 AAATGTAATGC
63329244 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:63343605 original size:3 final size:3
Alignment explanation
Indices: 63343597--63343622 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63343587 AGAAAGAAAG
63343597 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
63343623 ATAAAATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63344234 original size:13 final size:13
Alignment explanation
Indices: 63344213--63344249 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
63344203 CTATTTAGAA
63344213 TCAATTAAAATAT
1 TCAATTAAAATAT
*
63344226 TCAAAT-AAATAT
1 TCAATTAAAATAT
63344238 TCAATTAAAATA
1 TCAATTAAAATA
63344250 AATTAAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (13 bp):
TCAATTAAAATAT
Found at i:63345574 original size:3 final size:3
Alignment explanation
Indices: 63345566--63345592 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
63345556 TGTCATTCTC
63345566 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
63345593 GTGGATAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:63347449 original size:18 final size:19
Alignment explanation
Indices: 63347426--63347463 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
63347416 CATATGGATT
63347426 TAAAAT-AAATTTTAAAAA
1 TAAAATAAAATTTTAAAAA
63347444 TAAAATAAAATTTTAAAAA
1 TAAAATAAAATTTTAAAAA
63347463 T
1 T
63347464 CCAAAAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TAAAATAAAATTTTAAAAA
Found at i:63349938 original size:19 final size:19
Alignment explanation
Indices: 63349914--63349950 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63349904 TATCATTAAT
*
63349914 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
63349933 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
63349951 TTAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:63350004 original size:16 final size:16
Alignment explanation
Indices: 63349980--63350016 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
63349970 ATAAGAAGAA
63349980 TATTATTTAAATTTAT
1 TATTATTTAAATTTAT
* *
63349996 TATTTTTTAAATTTTT
1 TATTATTTAAATTTAT
63350012 TATTA
1 TATTA
63350017 AAATAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTATTTAAATTTAT
Found at i:63350088 original size:20 final size:17
Alignment explanation
Indices: 63350041--63350079 Score: 62
Period size: 16 Copynumber: 2.3 Consensus size: 17
63350031 TATTAAATAA
63350041 TTTATTAAAATAATTAAT
1 TTTATT-AAATAATTAAT
63350059 TTTATT-AATAATTAAT
1 TTTATTAAATAATTAAT
63350075 TTTAT
1 TTTAT
63350080 GACTAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 15 0.71
18 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTATTAAATAATTAAT
Found at i:63350147 original size:13 final size:14
Alignment explanation
Indices: 63350124--63350156 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
63350114 TAATATTGAA
63350124 ATATATAATATTTT
1 ATATATAATATTTT
63350138 ATAT-TAATATTTT
1 ATATATAATATTTT
*
63350151 AAATAT
1 ATATAT
63350157 TTTTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATATAATATTTT
Found at i:63355336 original size:16 final size:17
Alignment explanation
Indices: 63355296--63355338 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
63355286 TTCATACTTT
* *
63355296 ATAATTATTATAAATGA
1 ATAAATATTATAAAAGA
*
63355313 AAAAATATTATAAAAG-
1 ATAAATATTATAAAAGA
63355329 ATAAATATTA
1 ATAAATATTA
63355339 AACATAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (17 bp):
ATAAATATTATAAAAGA
Found at i:63356499 original size:20 final size:20
Alignment explanation
Indices: 63356474--63356523 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63356464 TGGCTTAAAA
63356474 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63356494 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63356511 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63356524 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63361139 original size:20 final size:20
Alignment explanation
Indices: 63361114--63361163 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63361104 TGGCTTAAAA
63361114 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63361134 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63361151 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63361164 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63362600 original size:28 final size:28
Alignment explanation
Indices: 63362558--63362632 Score: 132
Period size: 28 Copynumber: 2.6 Consensus size: 28
63362548 TTTTTATTAT
63362558 TTAATTATAAAAATTATAAAATAGTGAC
1 TTAATTATAAAAATTATAAAATAGTGAC
*
63362586 TTAATTATAAGAATTATAAAATAGTGAC
1 TTAATTATAAAAATTATAAAATAGTGAC
63362614 TTAATTATAAAAATATATA
1 TTAATTATAAAAAT-TATA
63362633 TAAAATAGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 40 0.91
29 4 0.09
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (28 bp):
TTAATTATAAAAATTATAAAATAGTGAC
Found at i:63363337 original size:42 final size:42
Alignment explanation
Indices: 63363239--63363540 Score: 328
Period size: 42 Copynumber: 7.2 Consensus size: 42
63363229 AATCTATTTC
* * * *
63363239 CGGCACTTACAAAAAAAAGCCGCTAAAGATCATGTTCTTTAG
1 CGGCGCTTAGAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
63363281 CGGCGCTTAGGAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
1 CGGCGCTTA-GAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
* *
63363324 CGGCGCTTAGAAAAAAACGCCGTAAAAAATCATGTTCTTTAG
1 CGGCGCTTAGAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
* *
63363366 CGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAA
1 CGGCGCTTAGAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
* * *
63363408 CGGCGCTT--AAGAAAACGCCGCTAAAGATCGTGTTCTTTAG
1 CGGCGCTTAGAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
* * * * * * *
63363448 AGGCGCTTTGGAAGAAAACACCTCTAAAAG-TAATGTTCTATAG
1 CGGCGC-TTAGAAAAAAACGCCGC-AAAAGATCATGTTCTTTAG
**
63363491 CGGCGCTT-GTTCAAAAACGCCGCTAAAAG-T-AGTGTTCTTTAG
1 CGGCGCTTAG-AAAAAAACGCCGC-AAAAGATCA-TGTTCTTTAG
63363533 CGGCGCTT
1 CGGCGCTT
63363541 GTTTCACAAA
Statistics
Matches: 226, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
40 34 0.15
41 4 0.02
42 119 0.53
43 65 0.29
44 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
CGGCGCTTAGAAAAAAACGCCGCAAAAGATCATGTTCTTTAG
Found at i:63363340 original size:85 final size:84
Alignment explanation
Indices: 63363249--63363540 Score: 353
Period size: 85 Copynumber: 3.5 Consensus size: 84
63363239 CGGCACTTAC
*
63363249 AAAAAAAAGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGCCGCAAAAGATCA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGCCGCAAAAGATCA
63363314 TGTTCTTTAGCGGCGCTTAG
66 TGTTCTTTAGCGGCGCTT-G
* *
63363334 AAAAAAACGCCG-TAAAAAATCATGTTCTTTAGCGGCGCTTA-GAAAAAAACGCCGCTAAAGATC
1 AAAAAAACGCCGCT-AAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGCCGCAAAAGATC
*
63363397 ATGTTCTTTAACGGCGCTT-
65 ATGTTCTTTAGCGGCGCTTG
* * * * * * * *
63363416 AAGAAAACGCCGCTAAAGATCGTGTTCTTTAGAGGCGCTTTGGAAGAAAACACCTCTAAAAG-TA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGCCGC-AAAAGATC
*
63363480 ATGTTCTATAGCGGCGCTTG
65 ATGTTCTTTAGCGGCGCTTG
**
63363500 TTCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTT
1 -AAAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTT
63363541 GTTTCACAAA
Statistics
Matches: 178, Mismatches: 21, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
82 34 0.19
83 30 0.17
84 45 0.25
85 69 0.39
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (84 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGCCGCAAAAGATCA
TGTTCTTTAGCGGCGCTTG
Found at i:63364806 original size:14 final size:14
Alignment explanation
Indices: 63364787--63364821 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
63364777 CTACAGAATA
*
63364787 AAACTAGTGAACTC
1 AAACTACTGAACTC
63364801 AAACTACTGAACTC
1 AAACTACTGAACTC
63364815 AAACTAC
1 AAACTAC
63364822 GCTAACAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.09, T:0.20
Consensus pattern (14 bp):
AAACTACTGAACTC
Found at i:63365103 original size:25 final size:24
Alignment explanation
Indices: 63365047--63365103 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 24
63365037 TATTGAATAT
*
63365047 TATTTTA-TTTAATAAAATATAAT
1 TATTTTATTTTAATAAAATATAAA
* * *
63365070 TACTATATTTTATATAAAATTTAAA
1 TATTTTATTTTA-ATAAAATATAAA
63365095 TATTTTATT
1 TATTTTATT
63365104 GTTTGTTAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 5 0.19
24 4 0.15
25 17 0.65
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTTTATTTTAATAAAATATAAA
Found at i:63366543 original size:32 final size:32
Alignment explanation
Indices: 63366502--63366566 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
63366492 GGTAATACTA
63366502 GGGTTATTTAGAGTGGTTTCAATGCACAACCG
1 GGGTTATTTAGAGTGGTTTCAATGCACAACCG
63366534 GGGTTATTTAGAGTGGTTTCAATGCACAACCG
1 GGGTTATTTAGAGTGGTTTCAATGCACAACCG
63366566 G
1 G
63366567 AATGAATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (32 bp):
GGGTTATTTAGAGTGGTTTCAATGCACAACCG
Found at i:63368107 original size:25 final size:24
Alignment explanation
Indices: 63368053--63368107 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 24
63368043 GTAATATTAT
*
63368053 TTTTA-TTTAATAAAATATAATTA
1 TTTTATTTTAATAAAATATAAATA
* * *
63368076 ATATATTTTATATAAAATTTAAATA
1 TTTTATTTTA-ATAAAATATAAATA
63368101 TTTTATT
1 TTTTATT
63368108 GAAATATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 3 0.12
24 4 0.17
25 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTTTATTTTAATAAAATATAAATA
Found at i:63370182 original size:24 final size:23
Alignment explanation
Indices: 63370155--63370204 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
63370145 ACATATCGAA
63370155 GGTCTGCTACTCTAGCACGTCTTT
1 GGTCTGCTACTCTAGCACGT-TTT
* *
63370179 GGTCTGCTGCTCTAGCATGTTTT
1 GGTCTGCTACTCTAGCACGTTTT
63370202 GGT
1 GGT
63370205 TTTTTTAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.10, C:0.24, G:0.26, T:0.40
Consensus pattern (23 bp):
GGTCTGCTACTCTAGCACGTTTT
Found at i:63372951 original size:18 final size:18
Alignment explanation
Indices: 63372909--63372951 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
63372899 AAAAGTATCA
63372909 TTAAACCCAAACAATTATT
1 TTAAA-CCAAACAATTATT
*
63372928 TCAAACCAAAC-ATTAATT
1 TTAAACCAAACAATT-ATT
63372946 TTAAAC
1 TTAAAC
63372952 TAGGATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 3 0.14
18 14 0.67
19 4 0.19
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (18 bp):
TTAAACCAAACAATTATT
Found at i:63374041 original size:56 final size:56
Alignment explanation
Indices: 63373955--63374084 Score: 242
Period size: 56 Copynumber: 2.3 Consensus size: 56
63373945 CACTTATTCA
*
63373955 TGGCACAAGGAACTTATGATGAATAGTAATGATAATAATGATAGAAGTTGTTTTTC
1 TGGCACAAGGAACTTATGATGAATAGTAATGATAATAATGATAGAAGTTGTTTTCC
63374011 TGGCACAAGGAACTTATGATGAATAGTAATGATAATAATGATAGAAGTTGTTTTCC
1 TGGCACAAGGAACTTATGATGAATAGTAATGATAATAATGATAGAAGTTGTTTTCC
*
63374067 TGGCACAAGCAACTTATG
1 TGGCACAAGGAACTTATG
63374085 GGATTCGTCC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 72 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (56 bp):
TGGCACAAGGAACTTATGATGAATAGTAATGATAATAATGATAGAAGTTGTTTTCC
Found at i:63375965 original size:29 final size:30
Alignment explanation
Indices: 63375922--63375980 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
63375912 GAATTGGATC
* *
63375922 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
*
63375952 AAATC-AAAGTTCATGTATACAATTACACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
63375981 TTAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAATTACACA
Found at i:63375999 original size:31 final size:29
Alignment explanation
Indices: 63375932--63376001 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
63375922 AAATCAAAAT
* *
63375932 TTCATGTATAAAATTGCACAAAATCAAAG
1 TTCATGTATAAAATTACACAAAACCAAAG
*
63375961 TTCATGTATACAATTACACATTAAACCATAA-
1 TTCATGTATAAAATTACACA--AAACCA-AAG
63375992 TTCATGTATA
1 TTCATGTATA
63376002 GTTTTAGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 18 0.51
31 15 0.43
32 2 0.06
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (29 bp):
TTCATGTATAAAATTACACAAAACCAAAG
Found at i:63376597 original size:13 final size:13
Alignment explanation
Indices: 63376576--63376609 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
63376566 ATGTGAAGAA
63376576 TATTATTTAAAAT
1 TATTATTTAAAAT
*
63376589 TATTTTTTAAAATT
1 TATTATTTAAAA-T
63376603 TATTATT
1 TATTATT
63376610 AAATTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATTTAAAAT
Found at i:63379076 original size:23 final size:26
Alignment explanation
Indices: 63379047--63379095 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
63379037 TATCAAAGAA
*
63379047 AAATTTAGAA-AAAAAA-GA-ATTTG
1 AAATTTAAAATAAAAAATGAGATTTG
63379070 AAATTTAAAATAAAAAATGAGATTTG
1 AAATTTAAAATAAAAAATGAGATTTG
63379096 TGATAAACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 6 0.27
25 2 0.09
26 5 0.23
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (26 bp):
AAATTTAAAATAAAAAATGAGATTTG
Found at i:63379249 original size:25 final size:24
Alignment explanation
Indices: 63379195--63379249 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 24
63379185 CCAATATTAT
*
63379195 TTTTA-TTTAATAAAATATAATTA
1 TTTTATTTTAATAAAATATAAATA
* * *
63379218 ATATATTTTATATAAAATTTAAATA
1 TTTTATTTTA-ATAAAATATAAATA
63379243 TTTTATT
1 TTTTATT
63379250 GAAATATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 3 0.12
24 4 0.17
25 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTTTATTTTAATAAAATATAAATA
Found at i:63387186 original size:17 final size:17
Alignment explanation
Indices: 63387172--63387206 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63387162 GGTTAAAATT
63387172 AATAAAAATTTAAAAAA
1 AATAAAAATTTAAAAAA
*
63387189 AATTAAAATTTAAAAAA
1 AATAAAAATTTAAAAAA
63387206 A
1 A
63387207 TCGACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAAAAATTTAAAAAA
Found at i:63403719 original size:55 final size:54
Alignment explanation
Indices: 63403605--63403719 Score: 151
Period size: 55 Copynumber: 2.1 Consensus size: 54
63403595 CTTTCATATC
* * * *
63403605 ATCTTTATGCATACATTTTTAAATTTTTTATTCGAAAGTAACTTTTTTTTTCAT
1 ATCTTTATGCATACATTTTTAAATTTTTTATTCGAAAGCAACATTTCTTTGCAT
* *
63403659 ATCTTTATGCATACATTTTTAATTTTTTTTATTTGAAAGCAACATTTCTTTGC-T
1 ATCTTTATGCATACATTTTTAA-ATTTTTTATTCGAAAGCAACATTTCTTTGCAT
63403713 ATTCTTT
1 A-TCTTT
63403720 TATATCATCT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 24 0.45
55 29 0.55
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (54 bp):
ATCTTTATGCATACATTTTTAAATTTTTTATTCGAAAGCAACATTTCTTTGCAT
Found at i:63405202 original size:15 final size:16
Alignment explanation
Indices: 63405182--63405219 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
63405172 AAGCAAAGTC
* *
63405182 AAAAAAGAGAA-GAAG
1 AAAAAAGAAAACGAAA
63405197 AAAAAAGAAAACGAAA
1 AAAAAAGAAAACGAAA
63405213 AAAAAAG
1 AAAAAAG
63405220 GTAAAATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAACGAAA
Found at i:63405339 original size:19 final size:17
Alignment explanation
Indices: 63405315--63405351 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
63405305 TAATTAGCAA
63405315 ATAAAAAAACAAAATAAAG
1 ATAAAAAAA-AAAA-AAAG
63405334 ATAAAAAAAAAAAAAAG
1 ATAAAAAAAAAAAAAAG
63405351 A
1 A
63405352 AATCTAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.84, C:0.03, G:0.05, T:0.08
Consensus pattern (17 bp):
ATAAAAAAAAAAAAAAG
Found at i:63405345 original size:17 final size:18
Alignment explanation
Indices: 63405318--63405351 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63405308 TTAGCAAATA
*
63405318 AAAAAACAAAATAAAGAT
1 AAAAAACAAAAAAAAGAT
63405336 AAAAAA-AAAAAAAAGA
1 AAAAAACAAAAAAAAGA
63405352 AATCTAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.85, C:0.03, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAAAACAAAAAAAAGAT
Found at i:63415907 original size:16 final size:17
Alignment explanation
Indices: 63415868--63415917 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
63415858 CTGAACAAAT
* *
63415868 AACTCAAAATAA-CTCG
1 AACTTAAAATAATCTAG
* *
63415884 AGCTTAAAGTAAT-TAG
1 AACTTAAAATAATCTAG
63415900 AACTTAAAATAATCTAG
1 AACTTAAAATAATCTAG
63415917 A
1 A
63415918 CCCATAATGA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 22 0.85
17 4 0.15
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (17 bp):
AACTTAAAATAATCTAG
Found at i:63432251 original size:218 final size:216
Alignment explanation
Indices: 63431836--63432244 Score: 562
Period size: 218 Copynumber: 1.9 Consensus size: 216
63431826 TACATATATA
* * *
63431836 ACTATTATTATATTATAGATTATAATAATAAATATAATATTGCATGATATTATAATGTTTAATCA
1 ACTATTATTATAATATAGATTATAATAATAAATATAATATTACATGATATTATAACGTTTAATCA
*
63431901 TTGATGCATATATATAAACTATTAACATATTATATGATATGATATAACGTTATATAATATAATAA
66 TTGATGCATATATATAAACTATT-A-ATATTATATGATATGATATAACATTATATAATATAATAA
* * * * * *
63431966 GAGGGTTAACTTTTAAATGTATGAAAAGTATAGTGACTTAGATCGTATTTTAACTAGTATAATAA
129 GAGGGATAACTTTCAAATGTATAAAAAGTAAAGTGACTTAGATCATATTTTAACCAGTATAATAA
63432031 TAAACAATAATATATAATGTACT
194 TAAACAATAATATATAATGTACT
*
63432054 ACTATTATTATAATATAGATTATAATAA-AAGATATAGTATTACATGATATTATAACGTTTAATC
1 ACTATTATTATAATATAGATTATAATAATAA-ATATAATATTACATGATATTATAACGTTTAATC
* * *
63432118 ATTTATGCGTATATATATAAACTATT-A-A-TATATGATATGATATAATATTATATAATATAGTA
65 ATTGATGC--ATATATATAAACTATTAATATTATATGATATGATATAACATTATATAATATAATA
* *
63432180 GGAGGGATAACTTTCAAATTTA-AAAAAGTAGAAG-GACTTAGAGT-ATATTTTAACCAGTATAA
128 AGAGGGATAACTTTCAAATGTATAAAAAGTA-AAGTGACTTAGA-TCATATTTTAACCAGTATAA
63432242 TAA
191 TAA
63432245 ATAATAATTA
Statistics
Matches: 170, Mismatches: 16, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
214 34 0.20
215 52 0.31
216 1 0.01
217 3 0.02
218 64 0.38
220 16 0.09
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (216 bp):
ACTATTATTATAATATAGATTATAATAATAAATATAATATTACATGATATTATAACGTTTAATCA
TTGATGCATATATATAAACTATTAATATTATATGATATGATATAACATTATATAATATAATAAGA
GGGATAACTTTCAAATGTATAAAAAGTAAAGTGACTTAGATCATATTTTAACCAGTATAATAATA
AACAATAATATATAATGTACT
Found at i:63432966 original size:22 final size:22
Alignment explanation
Indices: 63432908--63432966 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
63432898 GAATAGTATC
63432908 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
63432930 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
63432953 TACATATCAAATCT
1 TACAAATCAAATCT
63432967 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:63440687 original size:13 final size:13
Alignment explanation
Indices: 63440671--63440695 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63440661 CTTCCATTTT
63440671 TTATTTTCATCTA
1 TTATTTTCATCTA
63440684 TTATTTTCATCT
1 TTATTTTCATCT
63440696 TGCTATTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTTCATCTA
Found at i:63443711 original size:24 final size:24
Alignment explanation
Indices: 63443662--63443712 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
63443652 TTAATAAAAA
**
63443662 TAAAAATATTTAATATCTTTCCTT
1 TAAAAATATTTAATATCTTTAATT
63443686 TAAAATATATTTAATAT-TTTAATT
1 TAAAA-ATATTTAATATCTTTAATT
63443710 TAA
1 TAA
63443713 TACAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (24 bp):
TAAAAATATTTAATATCTTTAATT
Found at i:63444567 original size:31 final size:31
Alignment explanation
Indices: 63444520--63444580 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
63444510 AATATGCTAT
63444520 TTGGTATCTTAATTTGACTTCAATGTTCAAA
1 TTGGTATCTTAATTTGACTTCAATGTTCAAA
*
63444551 TTGGTA-CTTAAGTTTGACTTCAATTTTCAA
1 TTGGTATCTTAA-TTTGACTTCAATGTTCAA
63444581 TTTAGTGCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (31 bp):
TTGGTATCTTAATTTGACTTCAATGTTCAAA
Found at i:63445821 original size:39 final size:39
Alignment explanation
Indices: 63445740--63445823 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
63445730 TTAAGTCAAT
* ** * *
63445740 TGTAAATTTTAAATTTATTTGCATCAATATGGTTACACA
1 TGTAAATTTTAAATCTATTTGCATCAATATACTCACAAA
*
63445779 TGTAAATTTTAAATCTATTTGCATCAATGTACTGCA-AAA
1 TGTAAATTTTAAATCTATTTGCATCAATATACT-CACAAA
63445818 TGTAAA
1 TGTAAA
63445824 CGAAAAGACA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 37 0.97
40 1 0.03
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (39 bp):
TGTAAATTTTAAATCTATTTGCATCAATATACTCACAAA
Found at i:63448953 original size:89 final size:89
Alignment explanation
Indices: 63448800--63448968 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 89
63448790 TTAAAAATAA
* * * * *
63448800 AAATGTGAGTAAAAGAGGAATCGATCTTAGGACTCAAGGATAAAATCACTAATATTTAACCATCT
1 AAATGTGAGTAAAAGAGGAATCAAACTCAGGACTCAAGGACAAAACCACTAATATTTAACCATCT
63448865 AATCAAAGAAGTTGAAATATTAAC
66 AATCAAAGAAGTTGAAATATTAAC
* * * * * *
63448889 AAATGTGAGTAGAGGAGGAATCAAACTCAGGACTTAAGGGCAAAACCATTAATATTTAATCATCT
1 AAATGTGAGTAAAAGAGGAATCAAACTCAGGACTCAAGGACAAAACCACTAATATTTAACCATCT
63448954 AATCAAAGAAGTTGA
66 AATCAAAGAAGTTGA
63448969 TGAATTGAGT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 69 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (89 bp):
AAATGTGAGTAAAAGAGGAATCAAACTCAGGACTCAAGGACAAAACCACTAATATTTAACCATCT
AATCAAAGAAGTTGAAATATTAAC
Found at i:63450419 original size:84 final size:84
Alignment explanation
Indices: 63450260--63450439 Score: 222
Period size: 84 Copynumber: 2.1 Consensus size: 84
63450250 ATTCCTCTTC
* ** * * *
63450260 AAAAATGAAAAATTTTCAATTTAGTCTTCTCATAAATAGAGAAATTATAAATTAATATATAGTAA
1 AAAAATGAAAAATTTTCAATTCAAACCTCTCATAAATAAAGAAATTAGAAATTAATATATAGTAA
*
63450325 AATAGAACTTT-GGCCCTCT
66 AATAGAACTTTAGCCCCT-T
* *
63450344 CAAAATGAAAAATTTTCAATTCAAACCTCTTATAAATAAAGAAATTAGAAATTAATATAT-GATA
1 AAAAATGAAAAATTTTCAATTCAAACCTCTCATAAATAAAGAAATTAGAAATTAATATATAG-TA
*
63450408 AAATTA-CACTTTAGCCCCTT
65 AAA-TAGAACTTTAGCCCCTT
63450428 AAAAATGAAAAA
1 AAAAATGAAAAA
63450440 AATTATGTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
83 1 0.01
84 74 0.90
85 7 0.09
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.32
Consensus pattern (84 bp):
AAAAATGAAAAATTTTCAATTCAAACCTCTCATAAATAAAGAAATTAGAAATTAATATATAGTAA
AATAGAACTTTAGCCCCTT
Found at i:63450483 original size:23 final size:23
Alignment explanation
Indices: 63450457--63450500 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
63450447 TTTAATATCT
63450457 TTAAAAAATAATAAAATTATAAA
1 TTAAAAAATAATAAAATTATAAA
* *
63450480 TTAATACATAATAAAATTATA
1 TTAAAAAATAATAAAATTATA
63450501 TTTTGATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
TTAAAAAATAATAAAATTATAAA
Found at i:63450858 original size:30 final size:30
Alignment explanation
Indices: 63450822--63450878 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
63450812 ACTTCACTAT
63450822 TTTTATTAAAAAACTAATTTTAGTCCCTAC
1 TTTTATTAAAAAACTAATTTTAGTCCCTAC
* *
63450852 TTTTATTAAAAAATTCATTTTAGTCCC
1 TTTTATTAAAAAACTAATTTTAGTCCC
63450879 GCGTTGGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.46
Consensus pattern (30 bp):
TTTTATTAAAAAACTAATTTTAGTCCCTAC
Found at i:63451435 original size:97 final size:98
Alignment explanation
Indices: 63451248--63451485 Score: 251
Period size: 97 Copynumber: 2.5 Consensus size: 98
63451238 TTTTAATCTC
* * * *
63451248 TTAAAAAGTTAATTTTTAATCCCACACTGGCTAGA-ATACACTCTC----ATA-CCCACACTTAC
1 TTAAAAAATTAA-TTTTAATCCCACATTGACTAGAGA-ACACTCTCATATATATCTCACACTTAC
* ** *
63451307 CCTATAAATAAGTGTCAATTTCTTCCATATTTTTA
64 CATATAAATAAGTGAAAATTTCTTCCATATTTTCA
* * *
63451342 TTAAAAAATTAATTTTAATTCCACATTGACTTGAGAACACTC-CATATATATCTCACATTTACCA
1 TTAAAAAATTAATTTTAATCCCACATTGACTAGAGAACACTCTCATATATATCTCACACTTACCA
63451406 TATAAATAAGTGAAAATCTT-TT-CACTATTTTCA
66 TATAAATAAGTGAAAAT-TTCTTCCA-TATTTTCA
* * *
63451439 TTAAAAAGTTTATTTTAATCCCACATTGACTAGAGAATACTCTCATA
1 TTAAAAAATTAATTTTAATCCCACATTGACTAGAGAACACTCTCATA
63451486 CCTTACTTCT
Statistics
Matches: 119, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
92 1 0.01
93 24 0.20
94 12 0.10
96 5 0.04
97 71 0.60
98 6 0.05
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (98 bp):
TTAAAAAATTAATTTTAATCCCACATTGACTAGAGAACACTCTCATATATATCTCACACTTACCA
TATAAATAAGTGAAAATTTCTTCCATATTTTCA
Found at i:63451618 original size:50 final size:50
Alignment explanation
Indices: 63451563--63451712 Score: 159
Period size: 50 Copynumber: 3.1 Consensus size: 50
63451553 CACGTTTTAT
* * *
63451563 TTTAATCCCATATTCACTAAAGAATACTTCAATAGGTTATTTCTTTACTA
1 TTTAATCCCACATTCACTAAAGAATACTTCAATAGCTTACTTCTTTACTA
* * * * *
63451613 TTTAATCCCGCA-TCGA-TTAGGTAATACTTTAATAGCTTACAT-TTTA-T-
1 TTTAATCCCACATTC-ACTAAAG-AATACTTCAATAGCTTACTTCTTTACTA
63451660 TTTAATCCCACATTCACTAAAGAATAC-TCTAATAGCTTACTTCTTTACTA
1 TTTAATCCCACATTCACTAAAGAATACTTC-AATAGCTTACTTCTTTACTA
63451710 TTT
1 TTT
63451713 TTATTAAAAA
Statistics
Matches: 79, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
46 1 0.01
47 28 0.35
48 10 0.13
49 10 0.13
50 30 0.38
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (50 bp):
TTTAATCCCACATTCACTAAAGAATACTTCAATAGCTTACTTCTTTACTA
Found at i:63451686 original size:47 final size:47
Alignment explanation
Indices: 63451545--63451699 Score: 152
Period size: 47 Copynumber: 3.2 Consensus size: 47
63451535 GACTAGATAA
* * *
63451545 TAATAGCTCACGTTTTATTTTAATCCCATATTCACTAAAGAATACTT
1 TAATAGCTTACATTTTATTTTAATCCCACATTCACTAAAGAATACTT
* * ** * * *
63451592 CAATAGGTTATTTCTTTACTATTTAATCCCGCA-TCGA-TTAGGTAATACTT
1 TAATAGCTTACAT-TTTA-T-TTTAATCCCACATTC-ACTAAAG-AATACTT
*
63451642 TAATAGCTTACATTTTATTTTAATCCCACATTCACTAAAGAATACTC
1 TAATAGCTTACATTTTATTTTAATCCCACATTCACTAAAGAATACTT
63451689 TAATAGCTTAC
1 TAATAGCTTAC
63451700 TTCTTTACTA
Statistics
Matches: 84, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
47 37 0.44
48 10 0.12
49 10 0.12
50 27 0.32
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (47 bp):
TAATAGCTTACATTTTATTTTAATCCCACATTCACTAAAGAATACTT
Found at i:63453073 original size:16 final size:17
Alignment explanation
Indices: 63453052--63453091 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
63453042 TGTCAAAATA
63453052 TAATTTTATCATTT-AT
1 TAATTTTATCATTTCAT
63453068 TAA-TTTATCATTTCAT
1 TAATTTTATCATTTCAT
*
63453084 TATTTTTA
1 TAATTTTA
63453092 AAGGACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 10 0.48
16 7 0.33
17 4 0.19
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (17 bp):
TAATTTTATCATTTCAT
Found at i:63455500 original size:23 final size:23
Alignment explanation
Indices: 63455472--63455521 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
63455462 GAATTGATTG
*
63455472 ATATTTTT-TAAAAAATATTTAAT
1 ATATTTTTCT-AAAAATATATAAT
63455495 ATATTTTTCTAAAAATATATAAT
1 ATATTTTTCTAAAAATATATAAT
63455518 ATAT
1 ATAT
63455522 GGATATGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATTTTTCTAAAAATATATAAT
Found at i:63458956 original size:30 final size:31
Alignment explanation
Indices: 63458874--63458959 Score: 111
Period size: 30 Copynumber: 2.8 Consensus size: 31
63458864 TTTGAGGGAT
*
63458874 TTAATGAGAATTTTCAAAAATTTTGGTAGGC
1 TTAATGAGAATTTTAAAAAATTTTGGTAGGC
* * * *
63458905 CTAATTAGAACTTTAACAAATTTTGG-AGGC
1 TTAATGAGAATTTTAAAAAATTTTGGTAGGC
*
63458935 TTAATGAGAGTTTTAAAAAATTTTG
1 TTAATGAGAATTTTAAAAAATTTTG
63458960 AAATGCTTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 24 0.53
31 21 0.47
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.38
Consensus pattern (31 bp):
TTAATGAGAATTTTAAAAAATTTTGGTAGGC
Found at i:63460095 original size:23 final size:23
Alignment explanation
Indices: 63460069--63460114 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
63460059 AATAATGGAT
63460069 AATTTTTAATTTTGATCCTCTAC
1 AATTTTTAATTTTGATCCTCTAC
63460092 AATTTTTAATTTTGATCCTCTAC
1 AATTTTTAATTTTGATCCTCTAC
63460115 TTTTATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.04, T:0.52
Consensus pattern (23 bp):
AATTTTTAATTTTGATCCTCTAC
Found at i:63460193 original size:31 final size:31
Alignment explanation
Indices: 63460150--63460209 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
63460140 TATGTATATC
* * *
63460150 ACTATTCGAAAGTTTTTACTTAAGTCATTAA
1 ACTATTCAAAAGTTCTTAATTAAGTCATTAA
*
63460181 ACTATTCAAAAGTTCTTAATTTAGTCATT
1 ACTATTCAAAAGTTCTTAATTAAGTCATT
63460210 GGACCGCAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.43
Consensus pattern (31 bp):
ACTATTCAAAAGTTCTTAATTAAGTCATTAA
Found at i:63460803 original size:33 final size:33
Alignment explanation
Indices: 63460761--63460861 Score: 131
Period size: 33 Copynumber: 3.2 Consensus size: 33
63460751 CCAACTTGAC
63460761 CGATTTTAGTTGAGAAAATCAATCAAATTGAAT
1 CGATTTTAGTTGAGAAAATCAATCAAATTGAAT
* **
63460794 CGATTTTAGTTGAGAAAA-C---CAACTTG-CC
1 CGATTTTAGTTGAGAAAATCAATCAAATTGAAT
*
63460822 CGATTTTAGTTGAGAAAATCAATCAAACTGAAT
1 CGATTTTAGTTGAGAAAATCAATCAAATTGAAT
63460855 CGATTTT
1 CGATTTT
63460862 GATTCGATCG
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
28 18 0.32
29 7 0.12
32 6 0.11
33 25 0.45
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (33 bp):
CGATTTTAGTTGAGAAAATCAATCAAATTGAAT
Found at i:63460825 original size:61 final size:61
Alignment explanation
Indices: 63460747--63460861 Score: 212
Period size: 61 Copynumber: 1.9 Consensus size: 61
63460737 TTAACATGAT
*
63460747 AAAACCAACTTGACCGATTTTAGTTGAGAAAATCAATCAAATTGAATCGATTTTAGTTGAG
1 AAAACCAACTTGACCGATTTTAGTTGAGAAAATCAATCAAACTGAATCGATTTTAGTTGAG
*
63460808 AAAACCAACTTGCCCGATTTTAGTTGAGAAAATCAATCAAACTGAATCGATTTT
1 AAAACCAACTTGACCGATTTTAGTTGAGAAAATCAATCAAACTGAATCGATTTT
63460862 GATTCGATCG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (61 bp):
AAAACCAACTTGACCGATTTTAGTTGAGAAAATCAATCAAACTGAATCGATTTTAGTTGAG
Found at i:63460834 original size:28 final size:28
Alignment explanation
Indices: 63460747--63460839 Score: 114
Period size: 28 Copynumber: 3.1 Consensus size: 28
63460737 TTAACATGAT
63460747 AAAACCAACTTGACCGATTTTAGTTGAG
1 AAAACCAACTTGACCGATTTTAGTTGAG
* *
63460775 AAAATCAATCAAATTGAATCGATTTTAGTTGAG
1 AAAA-C---CAACTTG-ACCGATTTTAGTTGAG
*
63460808 AAAACCAACTTGCCCGATTTTAGTTGAG
1 AAAACCAACTTGACCGATTTTAGTTGAG
63460836 AAAA
1 AAAA
63460840 TCAATCAAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
28 22 0.40
29 7 0.13
32 7 0.13
33 19 0.35
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (28 bp):
AAAACCAACTTGACCGATTTTAGTTGAG
Found at i:63461049 original size:22 final size:22
Alignment explanation
Indices: 63461021--63461068 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
63461011 AACTAATGAC
63461021 CAATCGAATTAACCGATTAAAT
1 CAATCGAATTAACCGATTAAAT
* *
63461043 CAATCGAATTAACTGATTGAAT
1 CAATCGAATTAACCGATTAAAT
63461065 CAAT
1 CAAT
63461069 GTCAAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (22 bp):
CAATCGAATTAACCGATTAAAT
Found at i:63461613 original size:26 final size:26
Alignment explanation
Indices: 63461583--63461632 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
63461573 CTCAAATTTT
* *
63461583 ACTTTTCCACAGTATTTTTCAAAAAC
1 ACTTTTACACAGTACTTTTCAAAAAC
63461609 ACTTTTACACAGTACTTTTCAAAA
1 ACTTTTACACAGTACTTTTCAAAA
63461633 GCATTGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (26 bp):
ACTTTTACACAGTACTTTTCAAAAAC
Found at i:63470830 original size:37 final size:37
Alignment explanation
Indices: 63470780--63470853 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
63470770 TATTGTATTT
63470780 TCAGTTTCTTATTCAAGTTTATGAAATCATCTTTTAA
1 TCAGTTTCTTATTCAAGTTTATGAAATCATCTTTTAA
63470817 TCAGTTTCTTATTCAAGTTTATGAAATCATCTTTTAA
1 TCAGTTTCTTATTCAAGTTTATGAAATCATCTTTTAA
63470854 CTCTTACCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (37 bp):
TCAGTTTCTTATTCAAGTTTATGAAATCATCTTTTAA
Found at i:63491563 original size:9 final size:9
Alignment explanation
Indices: 63491549--63491600 Score: 95
Period size: 9 Copynumber: 5.8 Consensus size: 9
63491539 TTTGGTTAAA
63491549 AATTACCCG
1 AATTACCCG
63491558 AATTACCCG
1 AATTACCCG
63491567 AATTACCCG
1 AATTACCCG
63491576 AATTACCCG
1 AATTACCCG
*
63491585 AATTAACCG
1 AATTACCCG
63491594 AATTACC
1 AATTACC
63491601 GAAAAATACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.37, C:0.31, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:63492900 original size:21 final size:20
Alignment explanation
Indices: 63492871--63492909 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
63492861 ATCAAAGTTG
*
63492871 AAAAGAAAATGAAGAAATATC
1 AAAAGAAAACGAA-AAATATC
*
63492892 AAAATAAAACGAAAAATA
1 AAAAGAAAACGAAAAATA
63492910 AATGTGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.72, C:0.05, G:0.10, T:0.13
Consensus pattern (20 bp):
AAAAGAAAACGAAAAATATC
Found at i:63508923 original size:134 final size:134
Alignment explanation
Indices: 63508688--63509070 Score: 540
Period size: 134 Copynumber: 2.8 Consensus size: 134
63508678 AATGAATGGT
* *
63508688 ATCCCTCTTAGTTTACTGATAAGCTGCTAATAGTAATGTGTAAAACCGTGTGTAAATGGTTCTCA
1 ATCCCTCTTAGTTTACTGATAAACTGCTAATAGTAATGTGTAAAA-C-TGTGTAAATAGTTCTCA
* *
63508753 AAGCATGAGCCAGTTAATATGAATAGAATTGGATGAAATGAAGTAATTTTAGACCTGAATAAACG
64 AAGCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATTTTAGACCCGAATAAACG
63508818 AATGAC
129 AATGAC
*
63508824 GTCCCTCTTAGTTTACTGATAAACTGCTAATAGTAATGTGTAAAACTGTGTAAATAGTTCTCAAA
1 ATCCCTCTTAGTTTACTGATAAACTGCTAATAGTAATGTGTAAAACTGTGTAAATAGTTCTCAAA
* * *
63508889 GCATGAACTAGTTAATATGAATAGAATTGGATGAAATGAAGTAACTTTAGACCCGAATAAATGAA
66 GCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATTTTAGACCCGAATAAACGAA
63508954 TGAC
131 TGAC
* * *
63508958 ATCCCTCTTAGTTTACTGAT-AATTTCTGATAGT-ATGTGTTAAGCAA-TGTGTAAATAGTTCTC
1 ATCCCTCTTAGTTTACTGATAAACTGCTAATAGTAATGTG-TAA--AACTGTGTAAATAGTTCTC
* * * * *
63509020 -GAGCCATGAGTTAATTAATATGAACAGAGTTGGATGAAATGAAGTAATTTT
63 AAAG-CATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATTTT
63509071 TAGTGTTGAA
Statistics
Matches: 224, Mismatches: 19, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
132 5 0.02
133 15 0.07
134 158 0.71
135 3 0.01
136 43 0.19
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (134 bp):
ATCCCTCTTAGTTTACTGATAAACTGCTAATAGTAATGTGTAAAACTGTGTAAATAGTTCTCAAA
GCATGAGCTAGTTAATATGAATAGAATTGGATGAAATGAAGTAATTTTAGACCCGAATAAACGAA
TGAC
Found at i:63511097 original size:32 final size:30
Alignment explanation
Indices: 63511039--63511097 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 30
63511029 GGTCTAATTA
**
63511039 AATTTTTAATTTTTTTGTGAGATTAATAAG
1 AATTTTTAATTTTTAAGTGAGATTAATAAG
*
63511069 AATTTTTAAATATTTTAAGTGAGTTTAAT
1 AATTTTT-AAT-TTTTAAGTGAGATTAAT
63511098 TAAAAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 7 0.29
31 3 0.12
32 14 0.58
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.53
Consensus pattern (30 bp):
AATTTTTAATTTTTAAGTGAGATTAATAAG
Found at i:63513895 original size:27 final size:26
Alignment explanation
Indices: 63513840--63513895 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
63513830 AAGAGTTAAA
* * *
63513840 ATTACATTTAGTTTTTTTAAAATTTT
1 ATTACATTTAGTTATTTTAAAAATAT
*
63513866 ATTACCTTTAAGTTATTTTAAAAATAT
1 ATTACATTT-AGTTATTTTAAAAATAT
63513893 ATT
1 ATT
63513896 TATAATTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (26 bp):
ATTACATTTAGTTATTTTAAAAATAT
Found at i:63517341 original size:6 final size:6
Alignment explanation
Indices: 63517330--63517364 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
63517320 AAAACCTCAA
63517330 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
63517365 CATAAGCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:63535113 original size:31 final size:30
Alignment explanation
Indices: 63535032--63535114 Score: 73
Period size: 31 Copynumber: 2.7 Consensus size: 30
63535022 TTTTGGGAGT
*
63535032 TTAATAATAATTTC-CAAAATTTTTGAAGAC
1 TTAATAATAATTTCTCAAAA-TTATGAAGAC
* * *
63535062 CTAATTAAAAATTT-TAAAAATTATGAAGGGA-
1 TTAA-TAATAATTTCTCAAAATTATGAA--GAC
63535093 TTAATAATAATTTCTCAAAATT
1 TTAATAATAATTTCTCAAAATT
63535115 TTAAGGTATC
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
30 17 0.41
31 22 0.54
32 2 0.05
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.39
Consensus pattern (30 bp):
TTAATAATAATTTCTCAAAATTATGAAGAC
Found at i:63542439 original size:22 final size:25
Alignment explanation
Indices: 63542413--63542466 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
63542403 TTATAAATTC
63542413 AATTTAAAAG-ATA-TAAT-ACAAT
1 AATTTAAAAGCATATTAATAACAAT
*
63542435 AATTT-CAAGCATATTTAATAACAAT
1 AATTTAAAAGCATA-TTAATAACAAT
63542460 AATTTAA
1 AATTTAA
63542467 TCATAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 3 0.12
22 8 0.32
24 4 0.16
25 10 0.40
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (25 bp):
AATTTAAAAGCATATTAATAACAAT
Found at i:63546741 original size:22 final size:22
Alignment explanation
Indices: 63546716--63546759 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
63546706 ATCCAAATAA
*
63546716 CTCTTTGT-AAAGACTCAAGTGT
1 CTCTTTGTGAAA-ACACAAGTGT
63546738 CTCTTTGTGAAAACACAAGTGT
1 CTCTTTGTGAAAACACAAGTGT
63546760 TTTTCCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (22 bp):
CTCTTTGTGAAAACACAAGTGT
Found at i:63557254 original size:19 final size:19
Alignment explanation
Indices: 63557230--63557270 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
63557220 TTTTTTCGGG
*
63557230 TTTAGGGTTATGTTATAAA
1 TTTAGGATTATGTTATAAA
63557249 TTTAGGATTATGTTATAAA
1 TTTAGGATTATGTTATAAA
63557268 TTT
1 TTT
63557271 TTGTGTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (19 bp):
TTTAGGATTATGTTATAAA
Found at i:63557513 original size:19 final size:19
Alignment explanation
Indices: 63557481--63557532 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
63557471 GTTCATACAA
63557481 ATTAT-TTA-AAATTTAGG
1 ATTATGTTATAAATTTAGG
63557498 ATTATGTTATAAATTTAGG
1 ATTATGTTATAAATTTAGG
63557517 ATTATGTTATAAATTT
1 ATTATGTTATAAATTT
63557533 TTGTGTTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 25 0.76
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (19 bp):
ATTATGTTATAAATTTAGG
Found at i:63557700 original size:260 final size:262
Alignment explanation
Indices: 63557230--63557737 Score: 957
Period size: 260 Copynumber: 1.9 Consensus size: 262
63557220 TTTTTTCGGG
*
63557230 TTTAGGGTTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
1 TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
63557295 CAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTATACTAATAAATTTATAACATAATCC
66 CAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTATACTAATAAATTTATAACATAATCC
63557360 TAAATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAA
131 TAAATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAA
* *
63557425 TATATCCCGACATTACAATATTCATACAAAATTACAATATTACAATGTTCATACAAATTATTTAA
196 TATATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATACAAATTATTTAA
63557490 AA
261 AA
63557492 TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
1 TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
*
63557557 TAATTTATTAGTAATAAATTACAAAATTACTAATAAG-T-TACTAATAAATTTATAACATAATCC
66 CAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTATACTAATAAATTTATAACATAATCC
*
63557620 TAAATTACTAACAAATTAATTATAAAATAATTTCAATATTCATACAAAAAATTACAATATTACAA
131 TAAATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAA
63557685 TATATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATA
196 TATATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATA
63557738 TAAAATTGCA
Statistics
Matches: 241, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
260 140 0.58
261 1 0.00
262 100 0.41
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.40
Consensus pattern (262 bp):
TTTAGGATTATGTTATAAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTAAAATT
CAATTTATTAGTAATAAATTACAAAATTACTAATAAGTTATACTAATAAATTTATAACATAATCC
TAAATTACTAACAAATTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAA
TATATCCCGACATTACAATATTCACACAAAATTACAATATTACAATATTCATACAAATTATTTAA
AA
Found at i:63557732 original size:27 final size:27
Alignment explanation
Indices: 63557696--63557752 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
63557686 ATATCCCGAC
63557696 ATTACAATATTCACACAAAATTACAAT
1 ATTACAATATTCACACAAAATTACAAT
* * *
63557723 ATTACAATATTCATATAAAATTGCAAT
1 ATTACAATATTCACACAAAATTACAAT
63557750 ATT
1 ATT
63557753 TTTTTGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (27 bp):
ATTACAATATTCACACAAAATTACAAT
Found at i:63557848 original size:27 final size:27
Alignment explanation
Indices: 63557810--63557905 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
63557800 TATTGTAATT
63557810 TTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATTATAA
*
63557837 TTTTGTATGAATATTG-CA-ATT-T--
1 TTTTGTATGAATATTGTAATATTATAA
63557859 TTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATTATAA
63557886 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
63557906 GTCGGGATAT
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
22 16 0.26
23 1 0.02
24 4 0.06
25 4 0.06
26 1 0.02
27 36 0.58
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.53
Consensus pattern (27 bp):
TTTTGTATGAATATTGTAATATTATAA
Found at i:63557874 original size:49 final size:48
Alignment explanation
Indices: 63557795--63557958 Score: 199
Period size: 49 Copynumber: 3.4 Consensus size: 48
63557785 TATATTTAGC
*
63557795 ATGAATATTGTAATTTTTTGTATGAATATTGTAATATTATAATTTTGT
1 ATGAATATTGCAATTTTTTGTATGAATATTGTAATATTATAATTTTGT
63557843 ATGAATATTGCAATTTTTTTGTATGAATATTGTAATATTATAATTTTGT
1 ATGAATATTGCAA-TTTTTTGTATGAATATTGTAATATTATAATTTTGT
* * ** * *
63557892 ATGAATATTGTAA-TGTCGGGAT--ATATTGTAATATTGTAATTTTTTGT
1 ATGAATATTGCAATTTTTTGTATGAATATTGTAATATTATAA--TTTTGT
*
63557939 ATGAATATTGTAATTATTTT
1 ATGAATATTGCAATT-TTTT
63557959 ATAATTAATT
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
45 16 0.16
47 24 0.24
48 13 0.13
49 48 0.48
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.52
Consensus pattern (48 bp):
ATGAATATTGCAATTTTTTGTATGAATATTGTAATATTATAATTTTGT
Found at i:63558201 original size:12 final size:12
Alignment explanation
Indices: 63558186--63558217 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
63558176 CCGTATTTTT
63558186 TTAAAAAAATTA
1 TTAAAAAAATTA
63558198 TTAAAAAAA-TA
1 TTAAAAAAATTA
63558209 -TAAAAAAAT
1 TTAAAAAAAT
63558218 ATTTTATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 8 0.42
11 2 0.11
12 9 0.47
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
TTAAAAAAATTA
Found at i:63558232 original size:17 final size:17
Alignment explanation
Indices: 63558210--63558242 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63558200 AAAAAAATAT
63558210 AAAAAAATATT-TTATTC
1 AAAAAAA-ATTATTATTC
63558227 AAAAAAAATTATTATT
1 AAAAAAAATTATTATT
63558243 ATTTTATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAAAAAATTATTATTC
Found at i:63569522 original size:27 final size:27
Alignment explanation
Indices: 63569481--63569533 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
63569471 GAAAAATAGA
63569481 AAAAATATATATTTTAATGGATGTCGC
1 AAAAATATATATTTTAATGGATGTCGC
*
63569508 AAAAATATATTTTTTAATGGATGTCG
1 AAAAATATATATTTTAATGGATGTCG
63569534 TTGGTTCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (27 bp):
AAAAATATATATTTTAATGGATGTCGC
Found at i:63573314 original size:12 final size:12
Alignment explanation
Indices: 63573276--63573314 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63573266 GAAATATATA
*
63573276 AATAATATCAAT
1 AATAATATTAAT
*
63573288 AATAATAGTAAT
1 AATAATATTAAT
*
63573300 AATAATATTATT
1 AATAATATTAAT
63573312 AAT
1 AAT
63573315 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:63575023 original size:13 final size:13
Alignment explanation
Indices: 63575005--63575034 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63574995 TCCAGCAACT
63575005 ATGAATTTATTTC
1 ATGAATTTATTTC
*
63575018 ATGAATTTATTTG
1 ATGAATTTATTTC
63575031 ATGA
1 ATGA
63575035 TGGTCCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:63575207 original size:50 final size:50
Alignment explanation
Indices: 63575129--63575321 Score: 260
Period size: 50 Copynumber: 3.8 Consensus size: 50
63575119 ATTTGGGTAA
*
63575129 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
63575179 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * * *
63575229 AGATGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * *
63575279 AGAACATCCCATGTAAGACCATGTCTGGGACATAGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
63575322 TGTTATTACC
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 91 0.73
51 33 0.27
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:63585717 original size:12 final size:12
Alignment explanation
Indices: 63585679--63585717 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63585669 GAAATATATA
*
63585679 AATAATATCAAT
1 AATAATATTAAT
*
63585691 AATAATAGTAAT
1 AATAATATTAAT
*
63585703 AATAATATTATT
1 AATAATATTAAT
63585715 AAT
1 AAT
63585718 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:63592161 original size:31 final size:32
Alignment explanation
Indices: 63592125--63592189 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
63592115 CTTAGATAAT
*
63592125 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTACGATTCAATTACTC
63592156 TTTAAAGAGTTTTTATTACGATTCAATTACTC
1 TTTAAAGAGTTTTTATTACGATTCAATTACTC
63592188 TT
1 TT
63592190 GTAATTTTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTACGATTCAATTACTC
Found at i:63597882 original size:17 final size:17
Alignment explanation
Indices: 63597845--63597890 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
63597835 GTGTTTTACT
** *
63597845 TATTTTTATTTCGTTTT
1 TATTTTTATTTAATTTC
63597862 TATTTTTATTTAATTTC
1 TATTTTTATTTAATTTC
63597879 TATTATTTATTT
1 TATT-TTTATTT
63597891 TATATTAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 18 0.72
18 7 0.28
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (17 bp):
TATTTTTATTTAATTTC
Found at i:63606489 original size:12 final size:12
Alignment explanation
Indices: 63606451--63606489 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63606441 GAAATATATA
*
63606451 AATAATATCAAT
1 AATAATATTAAT
*
63606463 AATAATAGTAAT
1 AATAATATTAAT
*
63606475 AATAATATTATT
1 AATAATATTAAT
63606487 AAT
1 AAT
63606490 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:63612938 original size:31 final size:32
Alignment explanation
Indices: 63612902--63612966 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
63612892 CTTAGATAAT
*
63612902 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTACGATTCAATTACTC
63612933 TTTAAAGAGTTTTTATTACGATTCAATTACTC
1 TTTAAAGAGTTTTTATTACGATTCAATTACTC
63612965 TT
1 TT
63612967 GTAATTTTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTACGATTCAATTACTC
Found at i:63613577 original size:11 final size:11
Alignment explanation
Indices: 63613508--63613577 Score: 56
Period size: 12 Copynumber: 6.4 Consensus size: 11
63613498 CTTATTCTTT
63613508 AAAAAAAA-CA
1 AAAAAAAAGCA
63613518 AAAAAAAACGCA
1 AAAAAAAA-GCA
*
63613530 AAAAAAAAGTGA
1 AAAAAAAAG-CA
* **
63613542 GTAAAAAGCGCA
1 -AAAAAAAAGCA
63613554 AAAAAAAAG--
1 AAAAAAAAGCA
63613563 AAAAAAAAGCA
1 AAAAAAAAGCA
63613574 AAAA
1 AAAA
63613578 GCAAAAAAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
9 9 0.20
10 8 0.17
11 11 0.24
12 12 0.26
13 6 0.13
ACGTcount: A:0.77, C:0.09, G:0.11, T:0.03
Consensus pattern (11 bp):
AAAAAAAAGCA
Found at i:63618662 original size:17 final size:17
Alignment explanation
Indices: 63618625--63618670 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
63618615 GTGTTTTACT
** *
63618625 TATTTTTATTTCGTTTT
1 TATTTTTATTTAATTTC
63618642 TATTTTTATTTAATTTC
1 TATTTTTATTTAATTTC
63618659 TATTATTTATTT
1 TATT-TTTATTT
63618671 TATATTAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 18 0.72
18 7 0.28
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (17 bp):
TATTTTTATTTAATTTC
Found at i:63632089 original size:51 final size:51
Alignment explanation
Indices: 63631974--63632252 Score: 427
Period size: 51 Copynumber: 5.5 Consensus size: 51
63631964 CTTACGTATG
* * *
63631974 ATCACTTATCACTTATCCCTGATCAGATAAGTGTAGCT-AAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
63632024 ATCACTTG-CTACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTT
1 ATCACTTGTC-ACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
63632075 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
63632126 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
63632177 ATCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* * *
63632228 ATCACTTATCACTTCTCACTTATCA
1 ATCACTTGTCACTTGTCACTGATCA
63632253 CTTCTTACTT
Statistics
Matches: 211, Mismatches: 15, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
49 1 0.00
50 32 0.15
51 177 0.84
52 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
Found at i:63632235 original size:7 final size:7
Alignment explanation
Indices: 63632223--63632280 Score: 62
Period size: 7 Copynumber: 8.3 Consensus size: 7
63632213 CTAAAGCTAC
63632223 CACTTAT
1 CACTTAT
63632230 CACTTAT
1 CACTTAT
*
63632237 CACTTCT
1 CACTTAT
63632244 CACTTAT
1 CACTTAT
*
63632251 CACTTCT
1 CACTTAT
* *
63632258 TACTTGT
1 CACTTAT
*
63632265 CACTTGT
1 CACTTAT
*
63632272 CACTGAT
1 CACTTAT
63632279 CA
1 CA
63632281 GATAAGTGTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.22, C:0.31, G:0.05, T:0.41
Consensus pattern (7 bp):
CACTTAT
Found at i:63632246 original size:14 final size:14
Alignment explanation
Indices: 63632223--63632280 Score: 71
Period size: 14 Copynumber: 4.1 Consensus size: 14
63632213 CTAAAGCTAC
*
63632223 CACTTATCACTTAT
1 CACTTCTCACTTAT
63632237 CACTTCTCACTTAT
1 CACTTCTCACTTAT
* *
63632251 CACTTCTTACTTGT
1 CACTTCTCACTTAT
* *
63632265 CACTTGTCACTGAT
1 CACTTCTCACTTAT
63632279 CA
1 CA
63632281 GATAAGTGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.22, C:0.31, G:0.05, T:0.41
Consensus pattern (14 bp):
CACTTCTCACTTAT
Found at i:63632249 original size:21 final size:21
Alignment explanation
Indices: 63632223--63632280 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
63632213 CTAAAGCTAC
63632223 CACTTATCACTTATCACTTCT
1 CACTTATCACTTATCACTTCT
* * *
63632244 CACTTATCACTTCTTACTTGT
1 CACTTATCACTTATCACTTCT
* *
63632265 CACTTGTCACTGATCA
1 CACTTATCACTTATCA
63632281 GATAAGTGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.05, T:0.41
Consensus pattern (21 bp):
CACTTATCACTTATCACTTCT
Found at i:63632306 original size:58 final size:58
Alignment explanation
Indices: 63632243--63632377 Score: 234
Period size: 58 Copynumber: 2.3 Consensus size: 58
63632233 TTATCACTTC
* *
63632243 TCACTTATCACTTCTTACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTA
1 TCACTTATCACTTCTCACTTGTCACTTGTCACGGATCAGATAAGTGTAGCTGAAGCTA
*
63632301 TCACTTATCACTTGTCACTTGTCACTTGTCACGGATCAGATAAGTGTAGCTGAAGCTA
1 TCACTTATCACTTCTCACTTGTCACTTGTCACGGATCAGATAAGTGTAGCTGAAGCTA
*
63632359 TCACTTATCACTTGTCACT
1 TCACTTATCACTTCTCACT
63632378 GATCAGAAGT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 74 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (58 bp):
TCACTTATCACTTCTCACTTGTCACTTGTCACGGATCAGATAAGTGTAGCTGAAGCTA
Found at i:63632306 original size:79 final size:79
Alignment explanation
Indices: 63632180--63632332 Score: 252
Period size: 79 Copynumber: 1.9 Consensus size: 79
63632170 ACCACTTATC
63632180 ACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTCTC
1 ACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTCTC
63632245 ACTTATCACTTCTT
66 ACTTATCACTTCTT
* * * * *
63632259 ACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTGTCACTTGTC
1 ACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTCTC
*
63632324 ACTTGTCAC
66 ACTTATCAC
63632333 GGATCAGATA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.36
Consensus pattern (79 bp):
ACTTGTCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTCTC
ACTTATCACTTCTT
Found at i:63632311 original size:7 final size:7
Alignment explanation
Indices: 63632301--63632332 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
63632291 GCTGAAGCTA
*
63632301 TCACTTA
1 TCACTTG
63632308 TCACTTG
1 TCACTTG
63632315 TCACTTG
1 TCACTTG
63632322 TCACTTG
1 TCACTTG
63632329 TCAC
1 TCAC
63632333 GGATCAGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.19, C:0.31, G:0.09, T:0.41
Consensus pattern (7 bp):
TCACTTG
Found at i:63635586 original size:18 final size:19
Alignment explanation
Indices: 63635551--63635588 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
63635541 ACTTTACCAG
*
63635551 AAAACAAATCTCTTTACAT
1 AAAACAAATATCTTTACAT
63635570 AAAACAAATAT-TTTACAT
1 AAAACAAATATCTTTACAT
63635588 A
1 A
63635589 TACAGCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAACAAATATCTTTACAT
Found at i:63638382 original size:18 final size:18
Alignment explanation
Indices: 63638356--63638397 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
63638346 ATAATATTGT
63638356 AGAGGCAAGTCCCCAAGA
1 AGAGGCAAGTCCCCAAGA
*
63638374 AGAGTCAAGTCCCCAAGA
1 AGAGGCAAGTCCCCAAGA
*
63638392 AAAGGC
1 AGAGGC
63638398 CAAATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.26, G:0.26, T:0.07
Consensus pattern (18 bp):
AGAGGCAAGTCCCCAAGA
Done.