Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 217 of 228
Found at i:63642141 original size:3 final size:3
Alignment explanation
Indices: 63642133--63642162 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
63642123 TGATCAAGTG
*
63642133 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
63642163 TTGAAATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:63643684 original size:108 final size:108
Alignment explanation
Indices: 63643495--63643700 Score: 335
Period size: 108 Copynumber: 1.9 Consensus size: 108
63643485 TGGACTAAGA
63643495 TTTAAGAGAATATTTGGCTATTTGGTCAAACGAAAAAAATCGAAACCCAACACATTAGGGCACGT
1 TTTAAGAGAATATTTGGCTATTTGGTCAAACGAAAAAAATCGAAACCCAACACATTAGGGCACGT
*
63643560 TTCCTCGAATTTTGAAACGCAAAATATTGCCTTACTCTGAAAT
66 TTCCTCGAATTCTGAAACGCAAAATATTGCCTTACTCTGAAAT
* **
63643603 TTTAA-AGGATATTTGGCTATTTGGTTGAACGAAAAAAAATCGAAACCCAACACATTAGGGCACG
1 TTTAAGAGAATATTTGGCTATTTGGTCAAACG-AAAAAAATCGAAACCCAACACATTAGGGCACG
*
63643667 CTTT-CTCGAATTCTGAAATGCAAAATATTGCCTT
65 -TTTCCTCGAATTCTGAAACGCAAAATATTGCCTT
63643701 TATTATTTTT
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
107 23 0.25
108 65 0.71
109 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (108 bp):
TTTAAGAGAATATTTGGCTATTTGGTCAAACGAAAAAAATCGAAACCCAACACATTAGGGCACGT
TTCCTCGAATTCTGAAACGCAAAATATTGCCTTACTCTGAAAT
Found at i:63646386 original size:44 final size:44
Alignment explanation
Indices: 63646277--63646391 Score: 158
Period size: 44 Copynumber: 2.6 Consensus size: 44
63646267 TCAACCTGCC
* * *
63646277 CCACTGCAACTTCAAGGAGATAAAATCTGTGGTTTTAATCCGCT
1 CCACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAATCCGCT
* *
63646321 CCACTGCAACTTTAGAGAGATAAGATTTGTGGTTTTAATCCGCT
1 CCACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAATCCGCT
* * *
63646365 CCACTACAACTTCAAAAAGATAGGATT
1 CCACTGCAACTTCAAAGAGATAAGATT
63646392 GGCTTCTTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (44 bp):
CCACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAATCCGCT
Found at i:63646422 original size:88 final size:88
Alignment explanation
Indices: 63646318--63646521 Score: 291
Period size: 88 Copynumber: 2.3 Consensus size: 88
63646308 GTTTTAATCC
* * *
63646318 GCTCCACTGCAACTTTAGAGAGATAAGATTTGTGGTTTTAATCCGCTCCACTACAACTTCAAAAA
1 GCTCCTCTGCAACTTTAGAGAGATAAGATATGTGGTTTTAATCCGCTCCACTACAAATTCAAAAA
*
63646383 GATAGGATTGGCTTCTTTTGTCT
66 GATAGGATTGGCTTCTTCTGTCT
* * * * * * **
63646406 GTTCCTCTGTAGCTTTAGGGAGATAAAATATGTGGTTTTAATCCGCTCCACTATAAATTCAAGGA
1 GCTCCTCTGCAACTTTAGAGAGATAAGATATGTGGTTTTAATCCGCTCCACTACAAATTCAAAAA
63646471 GATAGGATTGGCTTCTTCTGTCT
66 GATAGGATTGGCTTCTTCTGTCT
*
63646494 GCTCCTCTGCAACTTCAGAGAGATAAGA
1 GCTCCTCTGCAACTTTAGAGAGATAAGA
63646522 CTGGATGCGA
Statistics
Matches: 98, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
88 98 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (88 bp):
GCTCCTCTGCAACTTTAGAGAGATAAGATATGTGGTTTTAATCCGCTCCACTACAAATTCAAAAA
GATAGGATTGGCTTCTTCTGTCT
Found at i:63646701 original size:50 final size:50
Alignment explanation
Indices: 63646571--63646829 Score: 200
Period size: 50 Copynumber: 5.2 Consensus size: 50
63646561 GATCTGCCAT
* * * *
63646571 CTTCAATCTATTTAACTGCAACGTCGGGAAAGTAAGATTCGCTATCGTAG
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAG
** * ** * * *
63646621 CTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATTCACTGTTGTAG
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAG
* * *
63646671 CTTCAATCTATTTAACTGCAATTTCGGGGAAGCAAGATTCACCT-TTGTAG
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTC-GCTGTTGTAG
* *** * * * * * * *
63646721 CTTTAATCTATTCCGCTGCACTGCCAGGAAAGTAAGATCCGCCGTTAT-G
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAG
* * * *
63646770 ACTTCAATCT-TTTAAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAG
1 -CTTCAATCTATTT-AACTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAG
63646821 CTTCAATCT
1 CTTCAATCT
63646830 GTTCCACTGC
Statistics
Matches: 157, Mismatches: 47, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
49 4 0.03
50 150 0.96
51 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (50 bp):
CTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAG
Found at i:63646747 original size:100 final size:99
Alignment explanation
Indices: 63646571--63646861 Score: 318
Period size: 100 Copynumber: 2.9 Consensus size: 99
63646561 GATCTGCCAT
* * * * *
63646571 CTTCAATCTATTTAACTGCAACGTCGGGAAAGTAAGATTCGCTATCGTAGCTTCAATCTATTCCA
1 CTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCCCT-TTGTAGCTTCAATCTATTCCA
* * * *
63646636 CTACACCGCCAGGGAAGTAAGATTCACTGTTGT-A
65 CTGCACTGCCAGGGAAGTAAGATTCACCGTTATGA
* *
63646670 GCTTCAATCTATTTAACTGCAATTTCGGGGAAGCAAGATTCACCTTTGTAGCTTTAATCTATTCC
1 -CTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTC-CCTTTGTAGCTTCAATCTATTCC
* * * *
63646735 GCTGCACTGCCAGGAAAGTAAGATCCGCCGTTATGA
64 ACTGCACTGCCAGGGAAGTAAGATTCACCGTTATGA
* * * *
63646771 CTTCAATCT-TTTAAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
1 CTTCAATCTATTT-AACTGCAATGTCGGGGAAGCAAGATTC-CCTTTGTAGCTTCAATCTATTCC
*
63646835 ACTGCA-TCGCCAAGGGAAATAAGATTC
64 ACTGCACT-GCC-AGGGAAGTAAGATTC
63646862 GCCATTGTTT
Statistics
Matches: 160, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
99 4 0.03
100 141 0.88
101 15 0.09
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (99 bp):
CTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCCCTTTGTAGCTTCAATCTATTCCAC
TGCACTGCCAGGGAAGTAAGATTCACCGTTATGA
Found at i:63646993 original size:45 final size:45
Alignment explanation
Indices: 63646953--63647399 Score: 462
Period size: 45 Copynumber: 10.0 Consensus size: 45
63646943 GTATCTCCGA
* * * *
63646953 TCTGCTTCACTGTCAGTAGAGGAAGGCAAGATCTGTTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
63646998 TCTGC-TCTGCTGTCAGTACAGGAAGGCAAGA-CTTGCTATCTTCAG
1 TCTGCTTC-GCTGTCAGTACAGGAAGGCAAGAGC-TGCTATCTTCAG
* * * *
63647043 CCTGCTCCGCTGCCAGTACAGGGAGGCAAG-GCTTGCTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGC-TGCTATCTTCAG
* * *
63647088 TCTGTTTCGCTGTCAGTACAGGAAGACAAGACCTGCTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
* * * * * *
63647133 CCTGCTCCACTGCCAGTACAGGGAGGTAAG-GCTTGCTATCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGC-TGCTATCTTCAG
* *
63647177 ATCTGCTTCGCTGTCAGTACAGGAAGGCATGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
* * * *
63647223 TCTG-TTCCGCTATCAGTACAGGAAGGCAAG-GCTGGTGTCTTCAA
1 TCTGCTT-CGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
* * * *
63647267 TCTGTTTCGCTGCCAGTACAAGAAGGCAAGATCTGCTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
* * * *
63647312 TCTGCTCCGCTGTCAGTACAGGGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
* **
63647355 ATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATTTGCTATCTTCA
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCA
63647400 TTGTTCTTTC
Statistics
Matches: 328, Mismatches: 59, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.00
44 77 0.23
45 246 0.75
46 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (45 bp):
TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAGCTGCTATCTTCAG
Found at i:63647070 original size:90 final size:88
Alignment explanation
Indices: 63646966--63647399 Score: 514
Period size: 90 Copynumber: 4.8 Consensus size: 88
63646956 GCTTCACTGT
* * * *
63646966 CAGTAGAGGAAGGCAAGATCTGTTATCTTCAGTCTGC-TCTGCTGTCAGTACAGGAAGGCAAGAC
1 CAGTACAGGGAGGCAAG-GCTGCTATCTTCAGTCTGCTTC-GCTGTCAGTACAGGAAGGCAAGA-
63647030 TTGCTATCTTCAGCCTGCTCCGCTGC
63 TTGCTATCTTCAGCCTGCTCCGCTGC
* * *
63647056 CAGTACAGGGAGGCAAGGCTTGCTATCTTCAGTCTGTTTCGCTGTCAGTACAGGAAGACAAGACC
1 CAGTACAGGGAGGCAAGGC-TGCTATCTTCAGTCTGCTTCGCTGTCAGTACAGGAAGGCAAGA-T
*
63647121 TGCTATCTTCAGCCTGCTCCACTGC
64 TGCTATCTTCAGCCTGCTCCGCTGC
* *
63647146 CAGTACAGGGAGGTAAGGCTTGCTATCTTC-GATCTGCTTCGCTGTCAGTACAGGAAGGCATGAT
1 CAGTACAGGGAGGCAAGGC-TGCTATCTTCAG-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGAT
* * **
63647210 CTGCTATCTTCAGTCTGTTCCGCTAT
64 -TGCTATCTTCAGCCTGCTCCGCTGC
* * * * * * *
63647236 CAGTACAGGAAGGCAAGGCTGGTGTCTTCAATCTGTTTCGCTGCCAGTACAAGAAGGCAAGATCT
1 CAGTACAGGGAGGCAAGGCTGCTATCTTCAGTCTGCTTCGCTGTCAGTACAGGAAGGCAAGAT-T
* *
63647301 GCTATCTTCAGTCTGCTCCGCTGT
65 GCTATCTTCAGCCTGCTCCGCTGC
* * *
63647325 CAGTACAGGGAGGCAAGGCTGGTGTCTTC-GATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATT
1 CAGTACAGGGAGGCAAGGCTGCTATCTTCAG-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGA-T
63647389 TGCTATCTTCA
64 TGCTATCTTCA
63647400 TTGTTCTTTC
Statistics
Matches: 302, Mismatches: 35, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
89 128 0.42
90 172 0.57
91 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (88 bp):
CAGTACAGGGAGGCAAGGCTGCTATCTTCAGTCTGCTTCGCTGTCAGTACAGGAAGGCAAGATTG
CTATCTTCAGCCTGCTCCGCTGC
Found at i:63647151 original size:135 final size:135
Alignment explanation
Indices: 63646953--63647399 Score: 521
Period size: 135 Copynumber: 3.3 Consensus size: 135
63646943 GTATCTCCGA
* * * * *
63646953 TCTGCTTCACTGTCAGTAGAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTCTGCTGTCAGTACA
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCCAGTACA
* *
63647018 GGAAGGCAAGACTTGCTATCTTCAGCCTGCTCCGCTGCCAGTACAGGGAGGCAAGGCTTGCTATC
66 GGAAGGCAAGACTTGCTATCTTCAGTCTGCTCCGCTGTCAGTACAGGGAGGCAAGGCTTGCTATC
63647083 TTCAG
131 TTCAG
* * * * *
63647088 TCTGTTTCGCTGTCAGTACAGGAAGACAAGACCTGCTATCTTCAGCCTGCTCCACTGCCAGTACA
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCCAGTACA
* * * * * * *
63647153 GGGAGGTAAGGCTTGCTATCTTC-GATCTGCTTCGCTGTCAGTACAGGAAGGC-ATGATCTGCTA
66 GGAAGGCAAGACTTGCTATCTTCAG-TCTGCTCCGCTGTCAGTACAGGGAGGCAAGGCT-TGCTA
63647216 TCTTCAG
129 TCTTCAG
* * * * * * *
63647223 TCTG-TTCCGCTATCAGTACAGGAAGGCAAG-GCTGGTGTCTTCAATCTGTTTCGCTGCCAGTAC
1 TCTGCTT-CGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCCAGTAC
* * *
63647286 AAGAAGGCAAGA-TCTGCTATCTTCAGTCTGCTCCGCTGTCAGTACAGGGAGGCAAGGC-TGGTG
65 AGGAAGGCAAGACT-TGCTATCTTCAGTCTGCTCCGCTGTCAGTACAGGGAGGCAAGGCTTGCTA
63647349 TCTTC-G
129 TCTTCAG
* *
63647355 ATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATTTGCTATCTTCA
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
63647400 TTGTTCTTTC
Statistics
Matches: 258, Mismatches: 45, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
132 1 0.00
133 34 0.13
134 85 0.33
135 138 0.53
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (135 bp):
TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGCCAGTACA
GGAAGGCAAGACTTGCTATCTTCAGTCTGCTCCGCTGTCAGTACAGGGAGGCAAGGCTTGCTATC
TTCAG
Found at i:63648448 original size:180 final size:180
Alignment explanation
Indices: 63648146--63648506 Score: 686
Period size: 180 Copynumber: 2.0 Consensus size: 180
63648136 ACCCTAGAAG
* *
63648146 AGGTTCAGGTGCCTGCAAATAGTGATAATGAATAAATCTCAATAAGTTATGTTAATTAAGGAAAA
1 AGGTTCAGGTACCTGCAAATAGTGATAACGAATAAATCTCAATAAGTTATGTTAATTAAGGAAAA
63648211 ATATGGAACTGAAAAAATATAGTTGTCGACAATAATTTTGCTTATGGGCACTCCTACTATCACCG
66 ATATGGAACTGAAAAAATATAGTTGTCGACAATAATTTTGCTTATGGGCACTCCTACTATCACCG
63648276 CTACATGTAGTATGCATGTGACTTAAAATTCAAAAGAAATCGAAGCAAAA
131 CTACATGTAGTATGCATGTGACTTAAAATTCAAAAGAAATCGAAGCAAAA
* *
63648326 AGGTTCAGGTACTTGCAAATGGTGATAACGAATAAATCTCAATAAGTTATGTTAATTAAGGAAAA
1 AGGTTCAGGTACCTGCAAATAGTGATAACGAATAAATCTCAATAAGTTATGTTAATTAAGGAAAA
63648391 ATATGGAACTGAAAAAATATAGTTGTCGACAATAATTTTGCTTATGGGCACTCCTACTATCACCG
66 ATATGGAACTGAAAAAATATAGTTGTCGACAATAATTTTGCTTATGGGCACTCCTACTATCACCG
63648456 CTACATGTAGTATGCATGTGACTTAAAATTCAAAAGAAATCGAAGCAAAA
131 CTACATGTAGTATGCATGTGACTTAAAATTCAAAAGAAATCGAAGCAAAA
63648506 A
1 A
63648507 CAAATGAATT
Statistics
Matches: 177, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
180 177 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (180 bp):
AGGTTCAGGTACCTGCAAATAGTGATAACGAATAAATCTCAATAAGTTATGTTAATTAAGGAAAA
ATATGGAACTGAAAAAATATAGTTGTCGACAATAATTTTGCTTATGGGCACTCCTACTATCACCG
CTACATGTAGTATGCATGTGACTTAAAATTCAAAAGAAATCGAAGCAAAA
Found at i:63650866 original size:17 final size:17
Alignment explanation
Indices: 63650844--63650877 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63650834 TTTTTCACAA
63650844 ATCCATCAGGATGAAGG
1 ATCCATCAGGATGAAGG
63650861 ATCCATCAGGATGAAGG
1 ATCCATCAGGATGAAGG
63650878 GTCAATGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (17 bp):
ATCCATCAGGATGAAGG
Found at i:63651226 original size:63 final size:64
Alignment explanation
Indices: 63651149--63651271 Score: 221
Period size: 63 Copynumber: 1.9 Consensus size: 64
63651139 TTAATCTTAG
*
63651149 TTTGGAAAATTGAGAATGAAATTAACCACAACTAG-GCAAAAATCAAATTAGTTGGGCCCATGT
1 TTTGGAAAATTGAGAATGAAATTAACCACAACTAGAGCAAAAATCAAATTAGCTGGGCCCATGT
*
63651212 TTTGGAAAATTGAGAATGAAATTAATCACAACTAGAGCAAAAATCAAATTAGCTGGGCCC
1 TTTGGAAAATTGAGAATGAAATTAACCACAACTAGAGCAAAAATCAAATTAGCTGGGCCC
63651272 GCATTTTGGA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 34 0.60
64 23 0.40
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.24
Consensus pattern (64 bp):
TTTGGAAAATTGAGAATGAAATTAACCACAACTAGAGCAAAAATCAAATTAGCTGGGCCCATGT
Found at i:63651291 original size:64 final size:63
Alignment explanation
Indices: 63651149--63651292 Score: 216
Period size: 64 Copynumber: 2.3 Consensus size: 63
63651139 TTAATCTTAG
* **
63651149 TTTGGAAAATTGAGAATGAAATTAACCACAACTAGGCAAAAATCAAATTAGTTGGGCCCATGT
1 TTTGGAAAATTGAGAATGAAATTAACCACAACTAGGCAAAAATCAAATTAGCTGGGCCCACAT
* *
63651212 TTTGGAAAATTGAGAATGAAATTAATCACAACTAGAGCAAAAATCAAATTAGCTGGGCCCGCAT
1 TTTGGAAAATTGAGAATGAAATTAACCACAACTAG-GCAAAAATCAAATTAGCTGGGCCCACAT
* *
63651276 TTTGGAAAGTAGAGAAT
1 TTTGGAAAATTGAGAAT
63651293 CATAGTTGTG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
63 34 0.47
64 39 0.53
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.25
Consensus pattern (63 bp):
TTTGGAAAATTGAGAATGAAATTAACCACAACTAGGCAAAAATCAAATTAGCTGGGCCCACAT
Found at i:63655925 original size:11 final size:11
Alignment explanation
Indices: 63655909--63655949 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
63655899 GAATATATCT
63655909 CATACCTTGCC
1 CATACCTTGCC
*
63655920 CATACCTTTCC
1 CATACCTTGCC
*
63655931 CATACC-TACC
1 CATACCTTGCC
63655941 CATACCTTG
1 CATACCTTG
63655950 GAAAGGTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.22, C:0.44, G:0.05, T:0.29
Consensus pattern (11 bp):
CATACCTTGCC
Found at i:63656508 original size:18 final size:18
Alignment explanation
Indices: 63656481--63656567 Score: 120
Period size: 18 Copynumber: 4.8 Consensus size: 18
63656471 TACGACTGTT
63656481 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
63656499 TACGGAACTATTCACGTA
1 TACGGTACTATTCACGTA
*
63656517 TACGGTACTATTTACGTA
1 TACGGTACTATTCACGTA
* *
63656535 TACAGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
63656553 TACGATACTGTTCAC
1 TACGGTACTATTCAC
63656568 ATATGCAGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:63660261 original size:11 final size:11
Alignment explanation
Indices: 63660245--63660287 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
63660235 TAGAATATAT
63660245 CCCATACCTTG
1 CCCATACCTTG
*
63660256 CCCATACCTTT
1 CCCATACCTTG
*
63660267 CCCATACC-TA
1 CCCATACCTTG
63660277 CCCATACCTTG
1 CCCATACCTTG
63660288 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:63660272 original size:22 final size:21
Alignment explanation
Indices: 63660244--63660286 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
63660234 TTAGAATATA
*
63660244 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
63660266 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
63660287 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:63666722 original size:22 final size:22
Alignment explanation
Indices: 63666694--63666738 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
63666684 GATCCTTAAC
63666694 TTTGAAAGTAATTTAATGAAAT
1 TTTGAAAGTAATTTAATGAAAT
63666716 TTTGAAAGTAATTTAATGAAAT
1 TTTGAAAGTAATTTAATGAAAT
63666738 T
1 T
63666739 CAAGCTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TTTGAAAGTAATTTAATGAAAT
Found at i:63666971 original size:26 final size:28
Alignment explanation
Indices: 63666906--63666977 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
63666896 ATAAGAAAAT
* *
63666906 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
*
63666936 TTATTATTAAATTATATGTAATAATA-A
1 TTATTATTAAATTATATGAAATAATATA
63666963 TTATT-TTAAATTATA
1 TTATTATTAAATTATA
63666978 CAAATTCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 10 0.26
27 6 0.15
28 14 0.36
29 1 0.03
30 8 0.21
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:63667174 original size:16 final size:17
Alignment explanation
Indices: 63667139--63667173 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
63667129 ATTATTAAGA
63667139 ATTTTATTAAAATATAT
1 ATTTTATTAAAATATAT
63667156 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
63667174 TAAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:63667384 original size:44 final size:45
Alignment explanation
Indices: 63667335--63667429 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
63667325 TTACACCTCT
* *
63667335 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
63667379 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
63667424 ATTACA
1 ATTACA
63667430 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:63667429 original size:16 final size:16
Alignment explanation
Indices: 63667410--63667461 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
63667400 GATTTGCTAT
* *
63667410 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
63667426 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63667442 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63667458 TACA
1 TACA
63667462 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:63668252 original size:18 final size:17
Alignment explanation
Indices: 63668229--63668262 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63668219 AATAAAGTTG
63668229 CTGAATTGAAATTGAAAA
1 CTGAATT-AAATTGAAAA
*
63668247 CTGAATTTAATTGAAA
1 CTGAATTAAATTGAAA
63668263 GAAAATAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (17 bp):
CTGAATTAAATTGAAAA
Found at i:63680560 original size:31 final size:31
Alignment explanation
Indices: 63680524--63680617 Score: 97
Period size: 31 Copynumber: 3.1 Consensus size: 31
63680514 TTTAAACCCT
*
63680524 AAAAATTTTAAAATTTTAATTAAATCTTGTA
1 AAAAATTTTAAAATTTTAATTAAATCTTTTA
* * *
63680555 AAAAA-TTCAAAATTTATCATT-AAT-TTTTT
1 AAAAATTTTAAAATTT-TAATTAAATCTTTTA
*
63680584 AAAAATTTTAAAAATTTTGATTAAA-CTTTTA
1 AAAAATTTT-AAAATTTTAATTAAATCTTTTA
63680615 AAA
1 AAA
63680618 CTTAATACTA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
29 8 0.16
30 18 0.35
31 25 0.49
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (31 bp):
AAAAATTTTAAAATTTTAATTAAATCTTTTA
Found at i:63680567 original size:30 final size:30
Alignment explanation
Indices: 63680523--63680617 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 30
63680513 TTTTAAACCC
* *
63680523 TAAAAATTTTAAAATTTTAATTAAATCTTG
1 TAAAAATTTAAAAATTTTAATTAAATCTTT
* * * *
63680553 TAAAAAATTCAAAATTTATCATT-AATTTTT
1 TAAAAATTTAAAAATTT-TAATTAAATCTTT
*
63680583 TAAAAATTTTAAAAATTTTGATTAAA-CTTT
1 TAAAAA-TTTAAAAATTTTAATTAAATCTTT
63680613 TAAAA
1 TAAAA
63680618 CTTAATACTA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
30 38 0.72
31 15 0.28
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.45
Consensus pattern (30 bp):
TAAAAATTTAAAAATTTTAATTAAATCTTT
Found at i:63687166 original size:29 final size:29
Alignment explanation
Indices: 63687124--63687199 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
63687114 ATAGTAATAC
*
63687124 ATAATCATTAATTTAATTCCATTTCATTT
1 ATAAGCATTAATTTAATTCCATTTCATTT
* **
63687153 ATAAGCATTAATTTAATTCTATTTTGTTT
1 ATAAGCATTAATTTAATTCCATTTCATTT
*
63687182 ATAAGAATTAATTTAATT
1 ATAAGCATTAATTTAATT
63687200 ATATTATTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (29 bp):
ATAAGCATTAATTTAATTCCATTTCATTT
Found at i:63687614 original size:13 final size:13
Alignment explanation
Indices: 63687596--63687620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63687586 GCTAGGCAAC
63687596 ATTTGGTGATATA
1 ATTTGGTGATATA
63687609 ATTTGGTGATAT
1 ATTTGGTGATAT
63687621 CGATTGAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (13 bp):
ATTTGGTGATATA
Found at i:63701058 original size:22 final size:23
Alignment explanation
Indices: 63701022--63701073 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
63701012 TAGCTAAAAG
* *
63701022 ATCCTCTCATACTTTTCAATTTA-
1 ATCCT-TCAAACTTTTCAATTAAT
63701045 ATCCTTCAAACTTTTCAATTAAT
1 ATCCTTCAAACTTTTCAATTAAT
63701068 ATCCTT
1 ATCCTT
63701074 TAATAAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.46
Consensus pattern (23 bp):
ATCCTTCAAACTTTTCAATTAAT
Found at i:63708453 original size:21 final size:20
Alignment explanation
Indices: 63708429--63708477 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
63708419 CTCTTGAATT
63708429 GATTGTTTTCCTATTTCAATC
1 GATTGTTTT-CTATTTCAATC
* * * *
63708450 GATTATTTTTTGTTTTAATC
1 GATTGTTTTCTATTTCAATC
63708470 GATTGTTT
1 GATTGTTT
63708478 CAATATCTGG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.18, C:0.10, G:0.12, T:0.59
Consensus pattern (20 bp):
GATTGTTTTCTATTTCAATC
Found at i:63712623 original size:31 final size:30
Alignment explanation
Indices: 63712588--63712666 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
63712578 AAAATTCAAA
* *
63712588 TATAATTTATTAATGTATT-AATTAATATTTT
1 TATAATTT-TTAAAGAATTAAATTAA-ATTTT
63712619 TATAATTTTTTAAAGAATTAAATTAAATTTT
1 TATAA-TTTTTAAAGAATTAAATTAAATTTT
*
63712650 TATCATTTTTAAA-AATT
1 TATAATTTTTAAAGAATT
63712667 TAAGTACAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
29 4 0.09
30 8 0.19
31 22 0.51
32 9 0.21
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (30 bp):
TATAATTTTTAAAGAATTAAATTAAATTTT
Found at i:63712678 original size:30 final size:31
Alignment explanation
Indices: 63712588--63712678 Score: 80
Period size: 31 Copynumber: 3.0 Consensus size: 31
63712578 AAAATTCAAA
* * * *
63712588 TATAATTTATTAATGTATT-AATTAATATTTT
1 TATAATTTTTTAAAGAATTAAAGTAA-ATTTT
*
63712619 TATAATTTTTTAAAGAATTAAATTAAATTTT
1 TATAATTTTTTAAAGAATTAAAGTAAATTTT
* *
63712650 TATCA-TTTTTAAA-AATTTAAGTACAATTT
1 TATAATTTTTTAAAGAATTAAAGTA-AATTT
63712679 CCTCCCACTG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
29 8 0.15
30 13 0.25
31 25 0.48
32 6 0.12
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (31 bp):
TATAATTTTTTAAAGAATTAAAGTAAATTTT
Found at i:63719615 original size:8 final size:8
Alignment explanation
Indices: 63719602--63719627 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
63719592 GCCCTCTCCT
63719602 CCTTTCTC
1 CCTTTCTC
63719610 CCTTTCTC
1 CCTTTCTC
63719618 CCTTTCTC
1 CCTTTCTC
63719626 CC
1 CC
63719628 CCACATACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (8 bp):
CCTTTCTC
Found at i:63719784 original size:4 final size:4
Alignment explanation
Indices: 63719767--63719804 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
63719757 CATTTCCCCT
* *
63719767 TTTA TTTG TTTA TTTA TTTA TTTA TTTA TAT- TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
63719805 TAGTTACTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 2 0.07
4 27 0.93
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:63719877 original size:14 final size:15
Alignment explanation
Indices: 63719842--63719879 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
63719832 TTGCTTATTA
*
63719842 TTTTATTTTAGTTTC
1 TTTTATTTTAGTATC
63719857 TTTTATTTTAGTATC
1 TTTTATTTTAGTATC
63719872 -TTTATTTT
1 TTTTATTTT
63719880 TTTTGTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (15 bp):
TTTTATTTTAGTATC
Found at i:63720666 original size:14 final size:14
Alignment explanation
Indices: 63720649--63720675 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63720639 TCTGCATTTG
63720649 CTCTACAGCATGTA
1 CTCTACAGCATGTA
63720663 CTCTACAGCATGT
1 CTCTACAGCATGT
63720676 GATGTCATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (14 bp):
CTCTACAGCATGTA
Found at i:63721522 original size:16 final size:18
Alignment explanation
Indices: 63721483--63721528 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 18
63721473 TTTATTTTTA
*
63721483 TTTTATGTTTATGCTTAT
1 TTTTATTTTTATGCTTAT
*
63721501 TGTTATTTTTA-G-TTAT
1 TTTTATTTTTATGCTTAT
*
63721517 TTTTATTGTTAT
1 TTTTATTTTTAT
63721529 TTTCTTAGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 13 0.57
17 1 0.04
18 9 0.39
ACGTcount: A:0.17, C:0.02, G:0.11, T:0.70
Consensus pattern (18 bp):
TTTTATTTTTATGCTTAT
Found at i:63721529 original size:12 final size:12
Alignment explanation
Indices: 63721471--63721531 Score: 58
Period size: 12 Copynumber: 5.3 Consensus size: 12
63721461 TTGAGTTTAT
*
63721471 TTTTTATTTTTA
1 TTTTTATTGTTA
63721483 -TTTTA-TGTTTA
1 TTTTTATTG-TTA
**
63721494 TGCTTATTGTTA
1 TTTTTATTGTTA
63721506 TTTTTA--GTTA
1 TTTTTATTGTTA
63721516 TTTTTATTGTTA
1 TTTTTATTGTTA
63721528 TTTT
1 TTTT
63721532 CTTAGACTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
10 11 0.28
11 8 0.21
12 18 0.46
13 2 0.05
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.74
Consensus pattern (12 bp):
TTTTTATTGTTA
Found at i:63726360 original size:33 final size:33
Alignment explanation
Indices: 63726323--63726469 Score: 109
Period size: 33 Copynumber: 4.4 Consensus size: 33
63726313 ATAACCTAGT
*
63726323 TATGGTCTTATCATTAGAA-TGCCATAGCCCAAC
1 TATGGTCTTA-CATTAAAACTGCCATAGCCCAAC
* * *
63726356 TATGGTCTTACTTATAAATACTGCCATGGTCCAAC
1 TATGGTCTTACAT-TAAA-ACTGCCATAGCCCAAC
* * * * * * * **
63726391 CATAGTCTTACGTTCAAAGTGTCATAACCCAGT
1 TATGGTCTTACATTAAAACTGCCATAGCCCAAC
* *
63726424 TATGGTCTTTTCATTAAAA-TGCCATAGCCCAGC
1 TATGGTC-TTACATTAAAACTGCCATAGCCCAAC
63726457 TATGGTCTTACAT
1 TATGGTCTTACAT
63726470 ATGAACATTG
Statistics
Matches: 86, Mismatches: 24, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
32 7 0.08
33 45 0.52
34 12 0.14
35 22 0.26
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (33 bp):
TATGGTCTTACATTAAAACTGCCATAGCCCAAC
Found at i:63726425 original size:101 final size:100
Alignment explanation
Indices: 63726243--63726501 Score: 317
Period size: 101 Copynumber: 2.6 Consensus size: 100
63726233 GTTTTCTTTG
* * * * *
63726243 TGCCATAGTCCAACTATGGTCTTACAGATGCAT-TGCCATGG-CCTAGCCATGGTCTTACATTCG
1 TGCCATAGCCCAACTATGGTCTTACATATGAATATGCCATGGTCC-AACCATGGTCTTACATTCA
* * *
63726306 TAGTGCTATAACCTAGTTATGGTCTTATCATTAGAA
65 AAGTGCTATAACCCAGTTATGGTCTTATCATTAAAA
* * * *
63726342 TGCCATAGCCCAACTATGGTCTTACTTATAAATACTGCCATGGTCCAACCATAGTCTTACGTTCA
1 TGCCATAGCCCAACTATGGTCTTACATATGAATA-TGCCATGGTCCAACCATGGTCTTACATTCA
*
63726407 AAGTG-TCATAACCCAGTTATGGTCTTTTCATTAAAA
65 AAGTGCT-ATAACCCAGTTATGGTCTTATCATTAAAA
* * *
63726443 TGCCATAGCCCAGCTATGGTCTTACATATGAACATTGTCATGGTCCAACCATGGTCTTA
1 TGCCATAGCCCAACTATGGTCTTACATATGAATA-TGCCATGGTCCAACCATGGTCTTA
63726502 TCTGTCAATT
Statistics
Matches: 136, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
99 28 0.21
100 1 0.01
101 105 0.77
102 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (100 bp):
TGCCATAGCCCAACTATGGTCTTACATATGAATATGCCATGGTCCAACCATGGTCTTACATTCAA
AGTGCTATAACCCAGTTATGGTCTTATCATTAAAA
Found at i:63727839 original size:21 final size:20
Alignment explanation
Indices: 63727815--63727867 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
63727805 ATAACAAAAT
63727815 AAAATAAAATGATAATATGTA-
1 AAAATAAAATGAT-ATATG-AG
63727836 AAAATGAAACAATGATATATGAG
1 AAAAT--AA-AATGATATATGAG
63727859 AAAATAAAA
1 AAAATAAAA
63727868 ATATCATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
20 2 0.07
21 7 0.25
22 1 0.04
23 12 0.43
24 6 0.21
ACGTcount: A:0.64, C:0.02, G:0.11, T:0.23
Consensus pattern (20 bp):
AAAATAAAATGATATATGAG
Found at i:63728023 original size:3 final size:3
Alignment explanation
Indices: 63728015--63728039 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63728005 ATGAAAAATA
63728015 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
63728040 GCAAAATGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63729118 original size:7 final size:7
Alignment explanation
Indices: 63729106--63729134 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
63729096 TAATATATTC
63729106 AAATAAA
1 AAATAAA
63729113 AAATAAA
1 AAATAAA
63729120 AAATAAA
1 AAATAAA
63729127 AAATAAA
1 AAATAAA
63729134 A
1 A
63729135 GAGATCACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:63731268 original size:43 final size:43
Alignment explanation
Indices: 63731207--63731294 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
63731197 CTTGTTTGGT
63731207 AAAAGTAGGGACTAAGCACAGAATTTATTATGACTAACGCGGA
1 AAAAGTAGGGACTAAGCACAGAATTTATTATGACTAACGCGGA
63731250 AAAAGTAGGGACTAAGCACAGAATTTATTATGACTAACGCGGA
1 AAAAGTAGGGACTAAGCACAGAATTTATTATGACTAACGCGGA
63731293 AA
1 AA
63731295 GAGTCACCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (43 bp):
AAAAGTAGGGACTAAGCACAGAATTTATTATGACTAACGCGGA
Found at i:63732252 original size:15 final size:15
Alignment explanation
Indices: 63732232--63732261 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63732222 TTTGAGAAAG
63732232 ATTAAAATTGTAATT
1 ATTAAAATTGTAATT
63732247 ATTAAAATTGTAATT
1 ATTAAAATTGTAATT
63732262 TTATCATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (15 bp):
ATTAAAATTGTAATT
Found at i:63734151 original size:15 final size:15
Alignment explanation
Indices: 63734131--63734160 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63734121 CAAATGATAA
63734131 AATTACAATTTTAAT
1 AATTACAATTTTAAT
63734146 AATTACAATTTTAAT
1 AATTACAATTTTAAT
63734161 CTTTCTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTACAATTTTAAT
Found at i:63735159 original size:43 final size:43
Alignment explanation
Indices: 63735098--63735185 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
63735088 TGGGTGACTC
63735098 TTTCCGCGTTAGTCATAATAAATTCTGTGCTTAGTCCCTACTT
1 TTTCCGCGTTAGTCATAATAAATTCTGTGCTTAGTCCCTACTT
63735141 TTTCCGCGTTAGTCATAATAAATTCTGTGCTTAGTCCCTACTT
1 TTTCCGCGTTAGTCATAATAAATTCTGTGCTTAGTCCCTACTT
63735184 TT
1 TT
63735186 ACCAAACAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (43 bp):
TTTCCGCGTTAGTCATAATAAATTCTGTGCTTAGTCCCTACTT
Found at i:63738367 original size:3 final size:3
Alignment explanation
Indices: 63738359--63738383 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63738349 CACATTTTGC
63738359 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
63738384 TATTTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:63738582 original size:21 final size:21
Alignment explanation
Indices: 63738529--63738583 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 21
63738519 CTAGTATGAT
63738529 ATTTTTATTTTCTCATATATC
1 ATTTTTATTTTCTCATATATC
63738550 ATTGTTTCATTTT-TACATATTATC
1 ATT-TTT-ATTTTCT-CATA-TATC
63738574 A-TTTTATTTT
1 ATTTTTATTTT
63738584 ATTTTGTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
21 8 0.27
22 7 0.23
23 10 0.33
24 5 0.17
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTTTTATTTTCTCATATATC
Found at i:63739974 original size:33 final size:34
Alignment explanation
Indices: 63739933--63740075 Score: 89
Period size: 33 Copynumber: 4.3 Consensus size: 34
63739923 GTTCATATGT
63739933 AAGACCATAGCTGGGCTATGGCA-TTTTAATGAA
1 AAGACCATAGCTGGGCTATGGCACTTTTAATGAA
* * * * * *
63739966 AAGACCATAACTGGGTTATGACACTTTGAACG-T
1 AAGACCATAGCTGGGCTATGGCACTTTTAATGAA
* * * * * *
63739999 AAGACTATGGTTGGACCATGGCAGTATTT-AT-AA
1 AAGACCATAGCTGGGCTATGGCACT-TTTAATGAA
* * *
63740032 GTAAGACCATAGTTGGGCTATGGCA-TTCTAATGAT
1 --AAGACCATAGCTGGGCTATGGCACTTTTAATGAA
63740067 AAGACCATA
1 AAGACCATA
63740076 ACTAGGTTAT
Statistics
Matches: 79, Mismatches: 24, Indels: 14
0.68 0.21 0.12
Matches are distributed among these distances:
33 48 0.61
34 11 0.14
35 20 0.25
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (34 bp):
AAGACCATAGCTGGGCTATGGCACTTTTAATGAA
Found at i:63740072 original size:101 final size:100
Alignment explanation
Indices: 63739897--63740155 Score: 317
Period size: 101 Copynumber: 2.6 Consensus size: 100
63739887 AATTGACAGA
* * * *
63739897 TAAGACCATGGTTGGACCATGACAATGTTCATATGTAAGACCATAGCTGGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGC-ATATTCATATGTAAGACCATAGTTGGGCTATGGCATTCTAA
* **
63739962 TGAAAAGACCATAACTGGGTTAT-GACACTTTGAACG
65 TGAAAAGACCATAACTAGGTTATAG-CACTACGAACG
* * *
63739998 TAAGACTATGGTTGGACCATGGCAGTATTTATAAGTAAGACCATAGTTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTGGACCATGGCA-TATTCATATGTAAGACCATAGTTGGGCTATGGCATTCTAA
* *
63740063 TGATAAGACCATAACTAGGTTATAGCACTACGAATG
65 TGAAAAGACCATAACTAGGTTATAGCACTACGAACG
* * * *
63740099 TAAGACCATGGCTAGG-CCATGGCA-ATGCATCTGTAAGACCATAGTTGGACTATGGCA
1 TAAGACCATGG-TTGGACCATGGCATATTCATATGTAAGACCATAGTTGGGCTATGGCA
63740156 CAAAGAAAAC
Statistics
Matches: 136, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
99 28 0.21
100 1 0.01
101 103 0.76
102 4 0.03
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (100 bp):
TAAGACCATGGTTGGACCATGGCATATTCATATGTAAGACCATAGTTGGGCTATGGCATTCTAAT
GAAAAGACCATAACTAGGTTATAGCACTACGAACG
Found at i:63744881 original size:12 final size:12
Alignment explanation
Indices: 63744864--63744924 Score: 58
Period size: 12 Copynumber: 5.3 Consensus size: 12
63744854 TAAGTATAAG
63744864 AAAATAACAATA
1 AAAATAACAATA
63744876 AAAATAAC--TA
1 AAAATAACAATA
63744886 AAAATAACAATA
1 AAAATAACAATA
**
63744898 AGCATAA-ACAT-
1 AAAATAACA-ATA
*
63744909 AAAATAAAAATA
1 AAAATAACAATA
63744921 AAAA
1 AAAA
63744925 AATAAACTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
10 10 0.25
11 8 0.20
12 22 0.55
ACGTcount: A:0.74, C:0.08, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAATAACAATA
Found at i:63745400 original size:29 final size:29
Alignment explanation
Indices: 63745359--63745424 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
63745349 ATGCTAAATA
63745359 AAAAAATATGTCTGGTGGCCATGCTCCAT
1 AAAAAATATGTCTGGTGGCCATGCTCCAT
63745388 AAAAAATATGTCTGGTGGCCATGCTCCAT
1 AAAAAATATGTCTGGTGGCCATGCTCCAT
63745417 AAAAAATA
1 AAAAAATA
63745425 AAGGGGTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (29 bp):
AAAAAATATGTCTGGTGGCCATGCTCCAT
Found at i:63745971 original size:15 final size:15
Alignment explanation
Indices: 63745934--63745971 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
63745924 AATAACAAAA
*
63745934 AAAAT-AAAGATACT
1 AAAATAAAAGAAACT
63745948 AAAATAAAAGAAACT
1 AAAATAAAAGAAACT
63745963 AAAATAAAA
1 AAAATAAAA
63745972 TAATAAGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (15 bp):
AAAATAAAAGAAACT
Found at i:63746035 original size:8 final size:8
Alignment explanation
Indices: 63746009--63746046 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
63745999 GAAGTAACTA
63746009 AAATAAA-
1 AAATAAAC
* *
63746016 ATATAAAT
1 AAATAAAC
63746024 AAATAAAC
1 AAATAAAC
63746032 AAATAAAC
1 AAATAAAC
63746040 AAATAAA
1 AAATAAA
63746047 AGGGGAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (8 bp):
AAATAAAC
Found at i:63746199 original size:8 final size:8
Alignment explanation
Indices: 63746186--63746211 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
63746176 GTGTATGTGG
63746186 GGGAGAAA
1 GGGAGAAA
63746194 GGGAGAAA
1 GGGAGAAA
63746202 GGGAGAAA
1 GGGAGAAA
63746210 GG
1 GG
63746212 AGGAGAGGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (8 bp):
GGGAGAAA
Found at i:63753170 original size:30 final size:31
Alignment explanation
Indices: 63753136--63753209 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
63753126 CAGTGGGAGG
*
63753136 AAATTGTACTTAAATT-TTT-AAAAATGATAA
1 AAATT-TAATTAAATTCTTTAAAAAATGATAA
* *
63753166 AAATTTAATTTAATTCTTTAAAAAATTATAA
1 AAATTTAATTAAATTCTTTAAAAAATGATAA
63753197 AAATATTAATTAA
1 AAAT-TTAATTAA
63753210 TACATTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.22
30 8 0.22
31 14 0.38
32 7 0.19
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (31 bp):
AAATTTAATTAAATTCTTTAAAAAATGATAA
Found at i:63753197 original size:31 final size:31
Alignment explanation
Indices: 63753148--63753226 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
63753138 ATTGTACTTA
*
63753148 AATT-TTT-AAAAATGATAAAAAT-TTAATTT
1 AATTCTTTAAAAAATTATAAAAATATTAA-TT
63753177 AATTCTTTAAAAAATTATAAAAATATTAATT
1 AATTCTTTAAAAAATTATAAAAATATTAATT
* * *
63753208 AATACATTAATAAATTATA
1 AATTCTTTAAAAAATTATA
63753227 TTTGAATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
29 4 0.09
30 3 0.07
31 32 0.74
32 4 0.09
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (31 bp):
AATTCTTTAAAAAATTATAAAAATATTAATT
Found at i:63758910 original size:26 final size:25
Alignment explanation
Indices: 63758849--63758910 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
63758839 TTTATATTTA
* *
63758849 TATTTA-TATTAAATTATATTTAAT
1 TATTTATTATTAAAATATATTAAAT
* *
63758873 AATTTTTGTATTAAAATATGATTAAAT
1 TATTTAT-TATTAAAATAT-ATTAAAT
63758900 TATTTATTATT
1 TATTTATTATT
63758911 TATTATTAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
24 4 0.14
26 14 0.48
27 11 0.38
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.56
Consensus pattern (25 bp):
TATTTATTATTAAAATATATTAAAT
Found at i:63759445 original size:12 final size:12
Alignment explanation
Indices: 63759428--63759452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63759418 TGTGTTCATT
63759428 CGGTTAACCGAC
1 CGGTTAACCGAC
63759440 CGGTTAACCGAC
1 CGGTTAACCGAC
63759452 C
1 C
63759453 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:63759627 original size:9 final size:8
Alignment explanation
Indices: 63759613--63759667 Score: 65
Period size: 9 Copynumber: 6.2 Consensus size: 8
63759603 TTTGGTTAAA
63759613 AATTACCTG
1 AATTACC-G
63759622 AATTACCCG
1 AATTA-CCG
63759631 AATTACCCG
1 AATTA-CCG
63759640 AATTAACCG
1 AATT-ACCG
63759649 AATTAACCG
1 AATT-ACCG
63759658 AATTACCG
1 AATTACCG
63759666 AA
1 AA
63759668 AAATACCCGA
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
8 6 0.14
9 35 0.80
10 3 0.07
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.24
Consensus pattern (8 bp):
AATTACCG
Found at i:63759636 original size:18 final size:17
Alignment explanation
Indices: 63759613--63759667 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 17
63759603 TTTGGTTAAA
*
63759613 AATTACCTGAATTACCCG
1 AATTACCCGAATTA-CCG
63759631 AATTACCCGAATTAACCG
1 AATTACCCGAATT-ACCG
*
63759649 AATTAACCGAATTACCG
1 AATTACCCGAATTACCG
63759666 AA
1 AA
63759668 AAATACCCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 6 0.18
18 27 0.79
19 1 0.03
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.24
Consensus pattern (17 bp):
AATTACCCGAATTACCG
Found at i:63759651 original size:27 final size:27
Alignment explanation
Indices: 63759613--63759664 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
63759603 TTTGGTTAAA
*
63759613 AATTACCTGAATTACCCGAATTACCCG
1 AATTACCTGAATTAACCGAATTACCCG
63759640 AATTAACC-GAATTAACCGAATTACC
1 AATT-ACCTGAATTAACCGAATTACC
63759665 GAAAAATACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.38, C:0.27, G:0.10, T:0.25
Consensus pattern (27 bp):
AATTACCTGAATTAACCGAATTACCCG
Found at i:63765365 original size:37 final size:37
Alignment explanation
Indices: 63765294--63765365 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
63765284 AAAAATATGT
* *
63765294 ATATAAAATATTTACAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTACAATAATCATATAAATAAACAAC
63765331 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
63765366 TTTAAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAC
Found at i:63766985 original size:44 final size:44
Alignment explanation
Indices: 63766936--63767733 Score: 268
Period size: 44 Copynumber: 18.6 Consensus size: 44
63766926 ATCTACTCTG
* * *
63766936 CTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTC-TTATTTCAATCTGCTCCA
* * * * * * *
63766980 CTGTAACTTCAGGGAGATAGGATAGT-GT-CTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGAT-CTCTTATTTCAATCTGCTCCA
* * ***
63767023 CTGTAATCTCAGGGAGATAATATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
*** ** *
63767067 CTGTAACCTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATT-T-CAATCTGCTCCA
* * * * *
63767113 CTGTAACCTCAGGGAAATAAGA-C-CTGA-TGCGATCTTCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
* * **
63767154 CTGTAACTTCAGAGAGATAAGATC-C---TTT-AATCCACTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
* * * * ** *
63767193 TTGTAATCTCAAGGAGATAGGAT-TAC-TATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCT-CTTAT-TTCAATCTGCTCCA
* * *
63767237 CTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
* * * * * * *
63767281 CTGTAACTTCAGGGAGATAGGATAGT-GT-CTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGAT-CTCTTATTTCAATCTGCTCCA
* * * ** *
63767324 CTGTAATCTCAGGGAGATAAGATCTAAAATTCTTT-GGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCT---CTTATTTCAATCTGCTCCA
* * * * * *
63767370 CTGTAATCTCAGGGAGATAAGA-C-CTGATGT-GATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
* * *
63767411 CTGTAACTTCAGAGAGATAAGATC-C---TTT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
* * * * * *
63767450 TTGTAATCTCAAGGAGATAGGAT-TAC-TATCCTT-GATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCT-CTTAT--TTCAATCTGCTCCA
* * * * *** *
63767494 CTGTAATCTTAGGGAGATAAGATCTGAAATTCTTT-GGCCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCT---CTTATTTCAATCTGCTCCA
* * * * * * *
63767540 CTGTAATCTCAGGCAGATGAGA-C-CTGTATGT-GATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCTCT-TATTTCAATCTGCTCCA
* * *
63767582 CTGTAACTTCAGAGAGATAAGA--TC-T-TTT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
* ** * * ** *
63767621 TTGTAATTTCAAGGAGATAGGAT-TAC-TATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCT-CTTAT-TTCAATCTGCTCCA
* * ***
63767665 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
63767709 CTGTAACCTCAGGGAGATAAGATCT
1 CTGTAACCTCAGGGAGATAAGATCT
63767734 GAAATTCTTT
Statistics
Matches: 558, Mismatches: 154, Indels: 84
0.70 0.19 0.11
Matches are distributed among these distances:
39 77 0.14
40 5 0.01
41 61 0.11
42 36 0.06
43 64 0.11
44 210 0.38
45 11 0.02
46 89 0.16
47 3 0.01
48 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (44 bp):
CTGTAACCTCAGGGAGATAAGATCTCTTATTTCAATCTGCTCCA
Found at i:63767040 original size:87 final size:87
Alignment explanation
Indices: 63766924--63767085 Score: 209
Period size: 87 Copynumber: 1.9 Consensus size: 87
63766914 AGACTTGATG
* * * * *
63766924 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTC-TGACTTCAATCCGCTCCACTGTAACC
63766988 TCAGGGAGATAGGATAGTGTCTT
65 TCAGGGAGATAGGATAGTGTCTT
* * * * * *
63767011 CGATCTGCTCCGCTGTAATCTCAGGGAGATAATATCTCTGGCTTCAATCTGCTCCACTGTAACCT
1 CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
63767076 CAGGGAGATA
66 CAGGGAGATA
63767086 AGATCTGAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
87 62 0.98
88 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (87 bp):
CGATCTACTCCGCTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCCGCTCCACTGTAACCT
CAGGGAGATAGGATAGTGTCTT
Found at i:63767451 original size:257 final size:257
Alignment explanation
Indices: 63767052--63767518 Score: 799
Period size: 257 Copynumber: 1.8 Consensus size: 257
63767042 ATATCTCTGG
*
63767052 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCACTGT
1 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTCCGGTCTACTCCACTGT
63767117 AACCTCAGGGAAATAAGACCTGATGCGATCTTCTCCACTGTAACTTCAGAGAGATAAGATCCTTT
66 AACCTCAGGGAAATAAGACCTGATGCGATCTTCTCCACTGTAACTTCAGAGAGATAAGATCCTTT
*
63767182 AATCCACTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTC
131 AATCCACTCCATTGTAATCTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAATCTC
63767247 AGGGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGT
196 AGGGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGT
* * * ** **
63767309 CTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTTGGTCTGTTCCACTGT
1 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTCCGGTCTACTCCACTGT
* * * *
63767374 AATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 AACCTCAGGGAAATAAGACCTGATGCGATCTTCTCCACTGTAACTTCAGAGAGATAAGATCCTTT
* *
63767439 AATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAATCTT
131 AATCCACTCCATTGTAATCTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAATCTC
63767504 AGGGAGATAAGATCT
196 AGGGAGATAAGATCT
63767519 GAAATTCTTT
Statistics
Matches: 195, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
257 195 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (257 bp):
CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTAAAATTCTCCGGTCTACTCCACTGT
AACCTCAGGGAAATAAGACCTGATGCGATCTTCTCCACTGTAACTTCAGAGAGATAAGATCCTTT
AATCCACTCCATTGTAATCTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGT
Found at i:63767642 original size:171 final size:170
Alignment explanation
Indices: 63767266--63767687 Score: 695
Period size: 171 Copynumber: 2.5 Consensus size: 170
63767256 AGATCTCTTA
* * * * *
63767266 TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGT-CTTCGATCTGCTCCGCTGTA
1 TTTTAATCCGCTCCATTGTAATTTCAAGGAGATAGGATTACTATCCTT-GATCTGCTCCGCTGTA
* *
63767329 ATCTCAGGGAGATAAGATCTAAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACC
65 ATCTCAGGGAGATAAGATCTAAAATTCTTTGGCCTGTTCCACTGTAATCTCAGGCAGATAAGACC
63767394 TGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATC
130 TGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATC
* *
63767435 CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAA
1 TTTTAATCCGCTCCATTGTAATTTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAA
* * *
63767500 TCTTAGGGAGATAAGATCTGAAATTCTTTGGCCTGTTCCACTGTAATCTCAGGCAGATGAGACCT
66 TCTCAGGGAGATAAGATCTAAAATTCTTTGGCCTGTTCCACTGTAATCTCAGGCAGATAAGACCT
63767565 GTATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATC
131 G-ATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATC
*
63767606 TTTTAATCCGCTCCATTGTAATTTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAA
1 TTTTAATCCGCTCCATTGTAATTTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAA
63767671 TCTCAGGGAGATAAGAT
66 TCTCAGGGAGATAAGAT
63767688 TTCTGGCTTC
Statistics
Matches: 234, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
169 32 0.14
170 82 0.35
171 120 0.51
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (170 bp):
TTTTAATCCGCTCCATTGTAATTTCAAGGAGATAGGATTACTATCCTTGATCTGCTCCGCTGTAA
TCTCAGGGAGATAAGATCTAAAATTCTTTGGCCTGTTCCACTGTAATCTCAGGCAGATAAGACCT
GATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATC
Found at i:63773360 original size:39 final size:39
Alignment explanation
Indices: 63773137--63773351 Score: 367
Period size: 39 Copynumber: 5.5 Consensus size: 39
63773127 TGGCATCAAG
63773137 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
1 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
63773176 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
1 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
* *
63773215 GACTCCGGTCCAAGCCCTGGAACGGGAAATAAGTTTACT
1 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
*
63773254 GACTCCGGACCAAGCCCTGGAACGGGTAATAAGTTTACC
1 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
* *
63773293 GACTCCGGTCCAAGCCCTGGAACGGGAAATAGGTTTACC
1 GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
* *
63773332 GACTCCGGCCCGAGCCCTGG
1 GACTCCGGACCAAGCCCTGG
63773352 TGTTGGAAAC
Statistics
Matches: 166, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 166 1.00
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (39 bp):
GACTCCGGACCAAGCCCTGGAACGGGAAATAAGTTTACC
Found at i:63782805 original size:21 final size:21
Alignment explanation
Indices: 63782779--63782835 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
63782769 AAAATAGACT
63782779 TTTAGCGGCGTTTTTTAGGCA
1 TTTAGCGGCGTTTTTTAGGCA
* *
63782800 TTTAGCGGTGTTTTTTAGGCC
1 TTTAGCGGCGTTTTTTAGGCA
*
63782821 TTTAGCGGCGCTTTT
1 TTTAGCGGCGTTTTT
63782836 CAGCGCCGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.11, C:0.16, G:0.28, T:0.46
Consensus pattern (21 bp):
TTTAGCGGCGTTTTTTAGGCA
Found at i:63782971 original size:43 final size:43
Alignment explanation
Indices: 63782918--63783052 Score: 198
Period size: 43 Copynumber: 3.1 Consensus size: 43
63782908 TTATGTGAAA
* *
63782918 AAACGTTGCTAAAGATCATGACCTTTAGTGACGCTTTTGTCAC
1 AAACGCTGCTAAAGATCATGACCTTTAGCGACGCTTTTGTCAC
*
63782961 AAACGCTGCTAAAGATCATGACCTTTAGCGACGCTTTTGTCAA
1 AAACGCTGCTAAAGATCATGACCTTTAGCGACGCTTTTGTCAC
* * * *
63783004 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTATCAC
1 AAACGCTGCTAAAGATCATGACCTTTAGCGACGC-TTTTGTCAC
63783048 AAACG
1 AAACG
63783053 ACGCTATAGA
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 71 0.86
44 12 0.14
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
AAACGCTGCTAAAGATCATGACCTTTAGCGACGCTTTTGTCAC
Found at i:63783076 original size:43 final size:43
Alignment explanation
Indices: 63782916--63783082 Score: 117
Period size: 43 Copynumber: 3.9 Consensus size: 43
63782906 GTTTATGTGA
** * * * * *
63782916 AAAAACGTTGCTAAAGATCATGACCTTTAGTGACGC-TTTTGTC
1 AAAAACGACGCTAAAGAACA-GAACTTTAGCGGCGCTTTTTATC
* * * * *
63782959 ACAAACG-CTGCTAAAGATCATGACCTTTAGCGACGC-TTTTGTC
1 AAAAACGAC-GCTAAAGAACA-GAACTTTAGCGGCGCTTTTTATC
* *
63783002 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTATC
1 AAAAACGACGCTAAAGAACA-GAACTTTAGCGGCGCTTTTTATC
* *
63783046 ACAAACGACGCTATAGAACA-AACTTCTAGCGGCGCTT
1 AAAAACGACGCTAAAGAACAGAACTT-TAGCGGCGCTT
63783083 CTCGCAAAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 4 0.04
43 81 0.74
44 24 0.22
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
AAAAACGACGCTAAAGAACAGAACTTTAGCGGCGCTTTTTATC
Found at i:63783076 original size:86 final size:85
Alignment explanation
Indices: 63782916--63783114 Score: 208
Period size: 86 Copynumber: 2.3 Consensus size: 85
63782906 GTTTATGTGA
** * * * *
63782916 AAAAACGTTGCTAAAGATCATGACCTTTAGTGACGCTTTTGTCACAAACGCTGCTAAAGATCATG
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACGCTGCTAAAGAACA-G
* *
63782981 ACCTTTAGCGACGCTT-TTGTC
65 AACTTTAGCGACGCTTCTCG-C
* *
63783002 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTTATCACAAACGAC-GCTATAGAACA
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGC-TTTTATCACAAACG-CTGCTAAAGAACA
*
63783066 -AACTTCTAGCGGCGCTTCTCGC
64 GAACTT-TAGCGACGCTTCTCGC
* *
63783088 AAAAACGCCACTAAA-AACATAACCTTT
1 AAAAACGCCGCTAAAGAACATGACCTTT
63783115 TAAAAAAATT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
85 15 0.16
86 56 0.58
87 24 0.25
88 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACGCTGCTAAAGAACAGA
ACTTTAGCGACGCTTCTCGC
Found at i:63783530 original size:43 final size:43
Alignment explanation
Indices: 63783464--63783548 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
63783454 CACATTGCAA
* * * *
63783464 GGTAATAAAAAATGCAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAAATACAATACATTTACTTAATCAAGGAAATCTT
* * *
63783507 GGTAATAAAAGATATAATACATTTACTTAATGAAGGAAATCT
1 GGTAATAAAAAATACAATACATTTACTTAATCAAGGAAATCT
63783549 AACAATGGAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (43 bp):
GGTAATAAAAAATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:63786976 original size:15 final size:15
Alignment explanation
Indices: 63786953--63787016 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
63786943 GAAATGTAGA
63786953 AACAATAATAATAAT
1 AACAATAATAATAAT
* *
63786968 AACATTAATAATAAC
1 AACAATAATAATAAT
* *
63786983 AGCAATAA-AACAAT
1 AACAATAATAATAAT
63786997 GAACTAAATAATAATAAT
1 -AAC--AATAATAATAAT
63787015 AA
1 AA
63787017 GAAAAAAGGG
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
14 4 0.11
15 21 0.57
17 7 0.19
18 5 0.14
ACGTcount: A:0.64, C:0.09, G:0.03, T:0.23
Consensus pattern (15 bp):
AACAATAATAATAAT
Found at i:63788596 original size:98 final size:98
Alignment explanation
Indices: 63788380--63788756 Score: 393
Period size: 96 Copynumber: 3.8 Consensus size: 98
63788370 AAAACAATGT
* * * * ** * * *
63788380 TCGCCATTGTAGCTTCAACCTGTTCCACTGTATCGCCAATGATGTGAGATTCGCTGTTGTAGCTT
1 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCG-CAAGGAAATAAGATTCGCCGTTGTGGCTT
* * * * *
63788445 CAATCTATTT-GACTACAATGTTGGGGAAGCGAGAT
65 CAATCT-TTTAAATTGCAATG-TGGGGAAGTGAGAC
* * * * * * *
63788480 TCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCAAGGAAATGAGATTCGCTGTTATGGCTTC
1 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCAAGGAAATAAGATTCGCCGTTGTGGCTTC
63788545 AATCTTTT-AATTGCAATGTCGGGGAAGTGAGAC
66 AATCTTTTAAATTGCAATGT-GGGGAAGTGAGAC
* * ** *
63788578 TCGCTGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAATAAGATTCGCCGTTGTGGCTTT
1 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCAAGGAAATAAGATTCGCCGTTGTGGCTTC
*
63788643 GATCTTTTAAATTGCAA--TGGGGAAGTGAGAC
66 AATCTTTTAAATTGCAATGTGGGGAAGTGAGAC
* ** * *
63788674 TCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAGTAAGATTCGCCATTGTGGCTTC
1 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCAAGGAAATAAGATTCGCCGTTGTGGCTTC
*
63788739 GATCTTTTAAATTGCAAT
66 AATCTTTTAAATTGCAAT
63788757 CTATGGTTAC
Statistics
Matches: 242, Mismatches: 32, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
96 91 0.38
97 2 0.01
98 81 0.33
99 38 0.16
100 30 0.12
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (98 bp):
TCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCAAGGAAATAAGATTCGCCGTTGTGGCTTC
AATCTTTTAAATTGCAATGTGGGGAAGTGAGAC
Found at i:63788636 original size:49 final size:49
Alignment explanation
Indices: 63788567--63788743 Score: 162
Period size: 49 Copynumber: 3.7 Consensus size: 49
63788557 GCAATGTCGG
* * *
63788567 GGAAGTGAGACTCGCTGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
* * ** * **** *
63788616 GGAAATAAGATTCGCCGTTGTGGCTTTGATCTTTTAAATTGCAAT-G--G
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGC-ATCGCCT
* *
63788663 GGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
* * *
63788712 GGAAGTAAGATTCGCCATTGTGGCTTCGATCT
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT
63788744 TTTAAATTGC
Statistics
Matches: 94, Mismatches: 30, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
46 2 0.02
47 32 0.34
49 58 0.62
50 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (49 bp):
GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCT
Found at i:63788701 original size:96 final size:96
Alignment explanation
Indices: 63788466--63788756 Score: 395
Period size: 96 Copynumber: 3.0 Consensus size: 96
63788456 ACTACAATGT
* * * * * * * ** *
63788466 TGGGGAAGCGAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACACCGCAAGGAAATGAGATTC
1 TGGGGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAATAAGATTC
* * *
63788531 GCTGTTATGGCTTCAATCTTTT-AATTGCAA
66 GCCGTTGTGGCTTCGATCTTTTAAATTGCAA
*
63788561 TGTCGGGGAAGTGAGACTCGCTGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAATAAGA
1 --T-GGGGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAATAAGA
*
63788626 TTCGCCGTTGTGGCTTTGATCTTTTAAATTGCAA
63 TTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAA
*
63788660 TGGGGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAGTAAGATTC
1 TGGGGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAATAAGATTC
*
63788725 GCCATTGTGGCTTCGATCTTTTAAATTGCAA
66 GCCGTTGTGGCTTCGATCTTTTAAATTGCAA
63788756 T
1 T
63788757 CTATGGTTAC
Statistics
Matches: 173, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
96 92 0.53
97 2 0.01
98 71 0.41
99 8 0.05
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (96 bp):
TGGGGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAATAAGATTC
GCCGTTGTGGCTTCGATCTTTTAAATTGCAA
Found at i:63802218 original size:13 final size:13
Alignment explanation
Indices: 63802199--63802237 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
63802189 ATGTATGTAC
* *
63802199 AAAAAAAGAAGAT
1 AAAAAACGAAAAT
63802212 GAAAAAACGAAAAT
1 -AAAAAACGAAAAT
63802226 AAAAAACGAAAA
1 AAAAAACGAAAA
63802238 GAATAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.77, C:0.05, G:0.13, T:0.05
Consensus pattern (13 bp):
AAAAAACGAAAAT
Found at i:63807348 original size:20 final size:20
Alignment explanation
Indices: 63807227--63807346 Score: 98
Period size: 20 Copynumber: 6.0 Consensus size: 20
63807217 CTTGTACGAG
* *
63807227 ATTTACACTTCGGTGCCCTT
1 ATTTGCACTTCGGTGCCCCT
*
63807247 ATTTGCACTTTGGTGCCCCT
1 ATTTGCACTTCGGTGCCCCT
* * * * *
63807267 ATATACACTTCGATGTCTCT
1 ATTTGCACTTCGGTGCCCCT
* *
63807287 ATTAGCACTACGGTGCCCCT
1 ATTTGCACTTCGGTGCCCCT
* *
63807307 GTTTGCACATT-TGTGCCCCT
1 ATTTGCAC-TTCGGTGCCCCT
* *
63807327 GTCTGCACTTCGGTGCCCCT
1 ATTTGCACTTCGGTGCCCCT
63807347 GTTATGCATT
Statistics
Matches: 76, Mismatches: 22, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
19 2 0.03
20 73 0.96
21 1 0.01
ACGTcount: A:0.14, C:0.32, G:0.18, T:0.36
Consensus pattern (20 bp):
ATTTGCACTTCGGTGCCCCT
Found at i:63817586 original size:16 final size:14
Alignment explanation
Indices: 63817556--63817589 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
63817546 AAACATTTAT
63817556 GAAAGAAAAGAAAG
1 GAAAGAAAAGAAAG
63817570 GAAAGTAAAAGGAAAG
1 GAAAG-AAAA-GAAAG
63817586 GAAA
1 GAAA
63817590 AGAAGGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 4 0.22
16 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (14 bp):
GAAAGAAAAGAAAG
Found at i:63822941 original size:181 final size:181
Alignment explanation
Indices: 63822631--63822961 Score: 554
Period size: 181 Copynumber: 1.8 Consensus size: 181
63822621 ACTTGTTTTT
* * *
63822631 GCTTTCCCTTTTGGTCGTTGGAAAAAGTTTGGACAACACGTTAGAATCTGAGTGGTTTTCCAGAA
1 GCTTTACCTTTTGGTCGTTGGAAAAAGTTTGGACAACACGTCAGAATCTGAGTGGTTTCCCAGAA
* * * *
63822696 ATTAACAGTGTCCATCTATCTTCCTTCCTATTTCAGGCCCAATTTCTTGGCAGGTTTCTTGATAT
66 ATTAACAGTGTCCACCTATCTTCCTTCCTATTGCACGCCCAATTTCTAGGCAGGTTTCTTGATAT
63822761 GTCATATTGATTGCCCAATTCCACTTAGATTGATCATTGTTTTCATGATAA
131 GTCATATTGATTGCCCAATTCCACTTAGATTGATCATTGTTTTCATGATAA
* *
63822812 GCTTTACCTTTTGGTCGTTGGAAAAAGTTTGGTCAACACGTCAGAATCTGAGTGGTTTCCCTGAA
1 GCTTTACCTTTTGGTCGTTGGAAAAAGTTTGGACAACACGTCAGAATCTGAGTGGTTTCCCAGAA
** *
63822877 ATTAACTTTGTCCACCTATCTTCCTTCCTATTGCACGCCCAATTTCTAGGCAGGTTTGTTGATAT
66 ATTAACAGTGTCCACCTATCTTCCTTCCTATTGCACGCCCAATTTCTAGGCAGGTTTCTTGATAT
63822942 GTCATATTGATTGCCCAATT
131 GTCATATTGATTGCCCAATT
63822962 GATCATTGTT
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
181 138 1.00
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (181 bp):
GCTTTACCTTTTGGTCGTTGGAAAAAGTTTGGACAACACGTCAGAATCTGAGTGGTTTCCCAGAA
ATTAACAGTGTCCACCTATCTTCCTTCCTATTGCACGCCCAATTTCTAGGCAGGTTTCTTGATAT
GTCATATTGATTGCCCAATTCCACTTAGATTGATCATTGTTTTCATGATAA
Found at i:63826693 original size:71 final size:71
Alignment explanation
Indices: 63826547--63826729 Score: 204
Period size: 71 Copynumber: 2.6 Consensus size: 71
63826537 CTAATGATTG
* * * * * * * **
63826547 AGATCCAACATATGTTACGGATTCTTGACAGCTTGAGCGAGTAACATCAAATCTTTCTTAATTGA
1 AGATCCAGCATATGTTGCGGATTCTCGACAACTTGAGTGAGCAACATCAAATCTTTATTAATCAA
* *
63826612 TGGTTG
66 TGGCTA
* * *
63826618 AGATCCAGCACATGTTGTGGATTCTCGACAACTTGAGTGAGCAACATCAAATCTTTATTTATCAA
1 AGATCCAGCATATGTTGCGGATTCTCGACAACTTGAGTGAGCAACATCAAATCTTTATTAATCAA
63826683 TGGCTA
66 TGGCTA
* * * *
63826689 AGATCCAGTATATGTTGCGAATTCCCGACTACTTGAGTGAG
1 AGATCCAGCATATGTTGCGGATTCTCGACAACTTGAGTGAG
63826730 TAGCACCAAA
Statistics
Matches: 92, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (71 bp):
AGATCCAGCATATGTTGCGGATTCTCGACAACTTGAGTGAGCAACATCAAATCTTTATTAATCAA
TGGCTA
Found at i:63836876 original size:52 final size:52
Alignment explanation
Indices: 63836798--63836911 Score: 201
Period size: 52 Copynumber: 2.2 Consensus size: 52
63836788 TTTGAGTACT
*
63836798 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
63836850 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATATTTA
1 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTA
63836902 TCTGATCAAG
1 TCTGATCAAG
63836912 AAACAAAGTG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (52 bp):
TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:63836940 original size:37 final size:37
Alignment explanation
Indices: 63836899--63837055 Score: 287
Period size: 37 Copynumber: 4.2 Consensus size: 37
63836889 TCGGCTATAT
63836899 TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
1 TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
*
63836936 TTATCTGATCAAGAGACAAAGTGATAAGTGGCTACAC
1 TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
63836973 TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
1 TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
* *
63837010 TTATCTGATCAAGAAACAAAGTGATAGGTGGTTACAC
1 TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
63837047 TTATCTGAT
1 TTATCTGAT
63837056 TAGGGACAAA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 116 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (37 bp):
TTATCTGATCAAGAAACAAAGTGATAAGTGGCTACAC
Found at i:63855495 original size:40 final size:43
Alignment explanation
Indices: 63855441--63855532 Score: 127
Period size: 40 Copynumber: 2.2 Consensus size: 43
63855431 ATACATATAT
*
63855441 ATATTTTTTATAACTTAAAACTATATAT-ATACATTTATTTT-
1 ATATTTTTTATAACTTAAAACTATATATAATACATATATTTTC
* *
63855482 TTATTTTTT-TAACTTAAAATTATATATACATACATATATTTTC
1 ATATTTTTTATAACTTAAAACTATATATA-ATACATATATTTTC
63855525 ATATTTTT
1 ATATTTTT
63855533 CTTTTTCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
40 17 0.39
41 8 0.18
42 12 0.27
43 7 0.16
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (43 bp):
ATATTTTTTATAACTTAAAACTATATATAATACATATATTTTC
Found at i:63855508 original size:42 final size:42
Alignment explanation
Indices: 63855441--63855532 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
63855431 ATACATATAT
* * *
63855441 ATATTTTTTATAACTTAAAACTATATATATACATTTATTTT-
1 ATATTTTTTATAACTTAAAAATATATACATACATATATTTTC
*
63855482 TTATTTTTT-TAACTTAAAATTATATATACATACATATATTTTC
1 ATATTTTTTATAACTTAAAA--ATATATACATACATATATTTTC
63855525 ATATTTTT
1 ATATTTTT
63855533 CTTTTTCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
40 10 0.23
41 8 0.19
42 18 0.42
43 7 0.16
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (42 bp):
ATATTTTTTATAACTTAAAAATATATACATACATATATTTTC
Found at i:63855686 original size:16 final size:17
Alignment explanation
Indices: 63855665--63855703 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
63855655 TTGTCCTTTT
63855665 TTATTTTATT-TATT-TA
1 TTATTTTATTGT-TTGTA
63855681 TTATTTTATTGTTTGTA
1 TTATTTTATTGTTTGTA
63855698 TTATTT
1 TTATTT
63855704 ATGTTTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (17 bp):
TTATTTTATTGTTTGTA
Found at i:63858614 original size:27 final size:27
Alignment explanation
Indices: 63858576--63858650 Score: 109
Period size: 26 Copynumber: 2.8 Consensus size: 27
63858566 TAGTATTGGC
63858576 GCCTATCTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
63858603 GCCTACCTGGGAGGCGCC-ATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
63858629 GCC-ATTCTGAGAGGCGCCAATG
1 GCCTA-TCTGGGAGGCGCCAATG
63858651 CTCTGATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
25 1 0.02
26 22 0.51
27 20 0.47
ACGTcount: A:0.16, C:0.25, G:0.39, T:0.20
Consensus pattern (27 bp):
GCCTATCTGGGAGGCGCCAATGGTGGT
Found at i:63858781 original size:39 final size:38
Alignment explanation
Indices: 63858727--63858809 Score: 139
Period size: 39 Copynumber: 2.2 Consensus size: 38
63858717 AAAAAATCAG
63858727 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAA-TTTTT
* *
63858766 TTATAATTAAACTTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
63858804 TTATAA
1 TTATAA
63858810 ACTTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 11 0.26
39 31 0.74
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
Found at i:63858919 original size:60 final size:60
Alignment explanation
Indices: 63858843--63858964 Score: 156
Period size: 60 Copynumber: 2.0 Consensus size: 60
63858833 ATACTAAACT
* * * * *
63858843 AAACACAACAACTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAA-AAATTAAATTATAAAATAATTAC
* * *
63858903 AAACACAAAAATTTATAACATAATCCCAAATTACTAACAATTTAATTATAAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAAAAATTAAATTATAAAATAATTAC
63858963 AA
1 AA
63858965 TATTCATACA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
59 8 0.15
60 45 0.85
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (60 bp):
AAACACAAAAACTTATAACATAATCCCAAATTACTAAAAATTAAATTATAAAATAATTAC
Found at i:63858964 original size:22 final size:21
Alignment explanation
Indices: 63858939--63858990 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
63858929 CAAATTACTA
*
63858939 ACAAT-TTAATTATAAAATAATT
1 ACAATATTAA-TACAAAA-AATT
*
63858961 ACAATATTCATACAAAAAATT
1 ACAATATTAATACAAAAAATT
63858982 ACAATATTA
1 ACAATATTA
63858991 CAATATATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 12 0.46
22 11 0.42
23 3 0.12
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.35
Consensus pattern (21 bp):
ACAATATTAATACAAAAAATT
Found at i:63858992 original size:8 final size:8
Alignment explanation
Indices: 63858979--63859069 Score: 56
Period size: 8 Copynumber: 10.4 Consensus size: 8
63858969 CATACAAAAA
63858979 ATTACAAT
1 ATTACAAT
63858987 ATTACAAT
1 ATTACAAT
* * *
63858995 ATATCCCGAC
1 AT-T-ACAAT
63859005 ATTACAAT
1 ATTACAAT
*
63859013 ATTCATACAAA
1 A-T--TACAAT
63859024 ATTACAAT
1 ATTACAAT
63859032 ATTACAAT
1 ATTACAAT
*
63859040 ATTCATACAAA
1 A-T--TACAAT
*
63859051 ATTATAAT
1 ATTACAAT
63859059 ATTACAAT
1 ATTACAAT
63859067 ATT
1 ATT
63859070 CATACAAAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 41 0.65
9 4 0.06
10 6 0.10
11 12 0.19
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (8 bp):
ATTACAAT
Found at i:63859029 original size:19 final size:19
Alignment explanation
Indices: 63859005--63859433 Score: 293
Period size: 22 Copynumber: 21.2 Consensus size: 19
63858995 ATATCCCGAC
63859005 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
63859024 ATTACAATA-T--TACAATA
1 ATTACAATATTCATACAA-A
* * *
63859041 TTCATACAAAATT-AT--AAT
1 AT--TACAATATTCATACAAA
63859059 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
*
63859081 ATTGCAATATTCATACAAA
1 ATTACAATATTCATACAAA
* *
63859100 GTTATAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
*
63859122 ATTAAAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
*
63859144 ATTAAAATATTCATACAAA
1 ATTACAATATTCATACAAA
63859163 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
*
63859185 ATTGCAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
* *
63859207 ATTGCAATATTCACACAAAAAA
1 ATTACAATATTCATAC---AAA
63859229 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
63859250 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
63859269 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
63859290 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
* * *
63859309 A-TACTA-ATCCAAAACTATAA
1 ATTACAATATTC-ATAC-A-AA
*
63859329 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
*
63859351 ATTACAATATTCATACAAC
1 ATTACAATATTCATACAAA
*
63859370 ATTACAATATTCATAAAAAA
1 ATTACAATATTCAT-ACAAA
63859390 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
*
63859411 AGTTAGAATATTCATACAAA
1 A-TTACAATATTCATACAAA
63859431 ATT
1 ATT
63859434 CTAATCTAAA
Statistics
Matches: 346, Mismatches: 30, Indels: 68
0.78 0.07 0.15
Matches are distributed among these distances:
16 13 0.04
17 7 0.02
18 9 0.03
19 95 0.27
20 34 0.10
21 47 0.14
22 134 0.39
23 5 0.01
25 2 0.01
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.30
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:63859041 original size:27 final size:27
Alignment explanation
Indices: 63859005--63859110 Score: 150
Period size: 27 Copynumber: 4.1 Consensus size: 27
63858995 ATATCCCGAC
*
63859005 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTATAAT
63859032 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTATAAT
63859059 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTATAAT
* *
63859081 ATTGCAATATTCATACAAAGTTATAAT
1 ATTACAATATTCATACAAAATTATAAT
63859108 ATT
1 ATT
63859111 CATACAAAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
22 15 0.21
23 4 0.06
24 1 0.01
25 1 0.01
26 5 0.07
27 45 0.63
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTATAAT
Found at i:63859109 original size:41 final size:41
Alignment explanation
Indices: 63859059--63859431 Score: 374
Period size: 41 Copynumber: 9.0 Consensus size: 41
63859049 AAATTATAAT
*
63859059 ATTACAATATTCATACAAAAAAATTGCAATATTCATAC-AAA
1 ATTACAATATTCATAC-AAAAAATTACAATATTCATACAAAA
* * *
63859100 GTTATAATATTCATACAAAAAAATTAAAATATTCATACAAAAAA
1 ATTACAATATTCATAC-AAAAAATTACAATATTCATAC--AAAA
*
63859144 ATTAAAATATTCATAC--AAAATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAATTACAATATTCATAC--AAAA
* * *
63859185 ATTGCAATATTCATACAAAAAAATTGCAATATTCACACAAAAAA
1 ATTACAATATTCATAC-AAAAAATTACAATATTCATAC--AAAA
63859229 ATTACAATATTCATACAAAAAATTACAATATTCATAC-AAA
1 ATTACAATATTCATACAAAAAATTACAATATTCATACAAAA
63859269 ATTACAATATTCATACAAAAAATTACAATATTCATAC-AAA
1 ATTACAATATTCATACAAAAAATTACAATATTCATACAAAA
* * * * *
63859309 A-TACTA-ATCCAAAACTATAAA-TACAAATTTAATT-ATA-AAATA
1 ATTACAATATTC-ATACAAAAAATTAC-AA--T-ATTCATACAAA-A
* *
63859351 ATTACAATATTCATAC--AACATTACAATATTCATAAAAAA
1 ATTACAATATTCATACAAAAAATTACAATATTCATACAAAA
*
63859390 ATTACAATATTCATACAAAAAAGTTAGAATATTCATACAAAA
1 ATTACAATATTCATACAAAAAA-TTACAATATTCATACAAAA
63859432 TTCTAATCTA
Statistics
Matches: 284, Mismatches: 27, Indels: 41
0.81 0.08 0.12
Matches are distributed among these distances:
38 9 0.03
39 34 0.12
40 47 0.17
41 85 0.30
42 25 0.09
43 26 0.09
44 58 0.20
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (41 bp):
ATTACAATATTCATACAAAAAATTACAATATTCATACAAAA
Found at i:63859146 original size:63 final size:64
Alignment explanation
Indices: 63859032--63859431 Score: 397
Period size: 63 Copynumber: 6.3 Consensus size: 64
63859022 AAATTACAAT
*
63859032 ATTACAATATTCATACAAAATTATAATATTACAATATTCATACAAAAAAATTGCAATATTCATAC
1 ATTACAATATTCATAC-AAA--A-AA-ATTACAATATTCATACAAAAAAATTACAATATTCATAC
63859097 -AAA
61 AAAA
* * * *
63859100 GTTATAATATTCATACAAAAAAATTAAAATATTCATACAAAAAAATTAAAATATTCATAC-AAA
1 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAAAATTACAATATTCATACAAAA
* * *
63859163 ATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAAAAATTGCAATATTCACACAAAAA
1 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAAAATTACAATATTCATAC--AAA
63859228 A
64 A
63859229 ATTACAATATTCATAC-AAAAAATTACAATATTCATAC---AAAATTACAATATTCATACAAAAA
1 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAAAATTACAATATTCATAC-AAAA
* * * * *
63859290 ATTACAATATTCATACAAAATACTAA-TCCAAAACT-ATA-AATACAAATT--TA-ATT-ATA-A
1 ATTACAATATTCATACAAAA-A--AATTACAATATTCATACAA-AAAAATTACAATATTCATACA
63859347 AATA
62 AA-A
*
63859351 ATTACAATATTCATAC---AACATTACAATATTCAT--AAAAAAATTACAATATTCATACAAAAA
1 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAAAATTACAATATTCATAC-AAAA
*
63859411 AGTTAGAATATTCATACAAAA
1 A-TTACAATATTCATACAAAA
63859432 TTCTAATCTA
Statistics
Matches: 281, Mismatches: 27, Indels: 52
0.78 0.08 0.14
Matches are distributed among these distances:
55 7 0.02
56 8 0.03
57 4 0.01
58 4 0.01
59 3 0.01
60 5 0.02
61 55 0.20
62 23 0.08
63 98 0.35
64 10 0.04
65 23 0.08
66 24 0.09
67 3 0.01
68 14 0.05
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.30
Consensus pattern (64 bp):
ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAAAATTACAATATTCATACAAAA
Found at i:63859420 original size:22 final size:21
Alignment explanation
Indices: 63859080--63859431 Score: 356
Period size: 22 Copynumber: 17.0 Consensus size: 21
63859070 CATACAAAAA
*
63859080 AATTGCAATATTCATAC--AA
1 AATTACAATATTCATACAAAA
* *
63859099 AGTTATAATATTCATACAAAAA
1 AATTACAATATTCATAC-AAAA
*
63859121 AATTAAAATATTCATACAAAAA
1 AATTACAATATTCATAC-AAAA
*
63859143 AATTAAAATATTCATAC--AA
1 AATTACAATATTCATACAAAA
63859162 AATTACAATATTCATACAAAAA
1 AATTACAATATTCATAC-AAAA
*
63859184 AATTGCAATATTCATACAAAAA
1 AATTACAATATTCATAC-AAAA
* *
63859206 AATTGCAATATTCACACAAAAA
1 AATTACAATATTCATAC-AAAA
63859228 AATTACAATATTCATACAAAA
1 AATTACAATATTCATACAAAA
63859249 AATTACAATATTCATAC--AA
1 AATTACAATATTCATACAAAA
63859268 AATTACAATATTCATACAAAA
1 AATTACAATATTCATACAAAA
63859289 AATTACAATATTCATAC--AA
1 AATTACAATATTCATACAAAA
* * * * *
63859308 AA-TACTA-ATCCAAAACTATA
1 AATTACAATATTC-ATACAAAA
* *
63859328 AA-TACAA-ATTTAATTATAAAA
1 AATTACAATA-TTCA-TACAAAA
63859349 TAATTACAATATTCATAC--AA
1 -AATTACAATATTCATACAAAA
*
63859369 CATTACAATATTCATA-AAAA
1 AATTACAATATTCATACAAAA
63859389 AATTACAATATTCATACAAAA
1 AATTACAATATTCATACAAAA
*
63859410 AAGTTAGAATATTCATACAAAA
1 AA-TTACAATATTCATACAAAA
63859432 TTCTAATCTA
Statistics
Matches: 287, Mismatches: 26, Indels: 37
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.01
18 7 0.02
19 70 0.24
20 28 0.10
21 50 0.17
22 120 0.42
23 8 0.03
24 1 0.00
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (21 bp):
AATTACAATATTCATACAAAA
Found at i:63859421 original size:122 final size:120
Alignment explanation
Indices: 63859223--63859450 Score: 359
Period size: 122 Copynumber: 1.9 Consensus size: 120
63859213 ATATTCACAC
*
63859223 AAAAAAATTACAATATTCATACAAAAAATTACAATATTCATACAAAATTACAATATTCATACAAA
1 AAAAAAATTACAATATTCATAC-AAAAATTACAATATTCATAAAAAATTACAATATTCATACAAA
63859288 AAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAATTTAATTAT
65 AAATTACAATATTCATACAAAATACTAAT-CAAAACTATAAATACAAATTTAATTAT
* *
63859345 AAAATAATTACAATATTCATAC-AACATTACAATATTCATAAAAAAATTACAATATTCATACAAA
1 AAAAAAATTACAATATTCATACAAAAATTACAATATTCAT-AAAAAATTACAATATTCATACAAA
* * *
63859409 AAAGTTAGAATATTCATACAAAATTCTAATCTAAACTATAAA
65 AAA-TTACAATATTCATACAAAATACTAATCAAAACTATAAA
63859451 CACTAAATAT
Statistics
Matches: 98, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
120 16 0.16
121 37 0.38
122 45 0.46
ACGTcount: A:0.56, C:0.14, G:0.01, T:0.30
Consensus pattern (120 bp):
AAAAAAATTACAATATTCATACAAAAATTACAATATTCATAAAAAATTACAATATTCATACAAAA
AATTACAATATTCATACAAAATACTAATCAAAACTATAAATACAAATTTAATTAT
Found at i:63859460 original size:61 final size:60
Alignment explanation
Indices: 63859212--63859460 Score: 181
Period size: 61 Copynumber: 4.1 Consensus size: 60
63859202 AAAAAATTGC
* * * *
63859212 AATATTCACACAAAAAAATTACAATATTCATACAAAAAAT-T-A-C-AATATTCATACAAAATTA
1 AATATTCATAC-AAAAAATTACAATATTCATAC-AAAATTCTAATCTAA-ACT-ATA-AAAACTA
* * *
63859273 CAATATTCATACAAAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATAC-A
1 -AATATTCATACAAAAAATTACAATATTCATACAAAATTCTAAT-CTAAACTATAAAAACTA
* * * * ** * *
63859334 AAT-TTAATTATAAAATAATTACAATATTCATACAACATTAC-AATATTCA-TAAAAAAATTA
1 AATATTCA-TACAAAA-AATTACAATATTCATACAAAATT-CTAATCTAAACTATAAAAACTA
* *
63859394 CAATATTCATACAAAAAAGTTAGAATATTCATACAAAATTCTAATCTAAACTATAAACACTA
1 -AATATTCATACAAAAAA-TTACAATATTCATACAAAATTCTAATCTAAACTATAAAAACTA
63859456 AATAT
1 AATAT
63859461 AGATAATTTA
Statistics
Matches: 146, Mismatches: 27, Indels: 29
0.72 0.13 0.14
Matches are distributed among these distances:
59 9 0.06
60 18 0.12
61 85 0.58
62 26 0.18
63 3 0.02
64 3 0.02
65 2 0.01
ACGTcount: A:0.55, C:0.14, G:0.01, T:0.30
Consensus pattern (60 bp):
AATATTCATACAAAAAATTACAATATTCATACAAAATTCTAATCTAAACTATAAAAACTA
Found at i:63859517 original size:12 final size:12
Alignment explanation
Indices: 63859500--63859525 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63859490 AAAAATTCAC
63859500 AATATCTTCTAA
1 AATATCTTCTAA
63859512 AATATCTTCTAA
1 AATATCTTCTAA
63859524 AA
1 AA
63859526 AATTCACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AATATCTTCTAA
Found at i:63862146 original size:21 final size:20
Alignment explanation
Indices: 63862107--63862146 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
63862097 AATTATTAAA
*
63862107 TATATTTTTTAATAAAAATT
1 TATATTTTTTAACAAAAATT
*
63862127 TATATTATTTTAACATAAAT
1 TATATT-TTTTAACAAAAAT
63862147 CTAATTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TATATTTTTTAACAAAAATT
Found at i:63864329 original size:17 final size:18
Alignment explanation
Indices: 63864307--63864342 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
63864297 GAGACTTTAA
63864307 TGAAAGAGGTGA-AATGT
1 TGAAAGAGGTGACAATGT
*
63864324 TGAAAGTGGTGACAATGT
1 TGAAAGAGGTGACAATGT
63864342 T
1 T
63864343 TCCCTCTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.36, C:0.03, G:0.33, T:0.28
Consensus pattern (18 bp):
TGAAAGAGGTGACAATGT
Found at i:63876352 original size:18 final size:18
Alignment explanation
Indices: 63876323--63876357 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
63876313 ATTACTACAA
63876323 ATAAAAATTT-AATATTT
1 ATAAAAATTTAAATATTT
63876340 ATAAAATATTTAAATATT
1 ATAAAA-ATTTAAATATT
63876358 AAATATGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATAAAAATTTAAATATTT
Found at i:63882771 original size:7 final size:7
Alignment explanation
Indices: 63882759--63882784 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63882749 ATAATTGTTT
63882759 TTATTAA
1 TTATTAA
63882766 TTATTAA
1 TTATTAA
63882773 TTATTAA
1 TTATTAA
63882780 TTATT
1 TTATT
63882785 GATAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
TTATTAA
Found at i:63882795 original size:18 final size:18
Alignment explanation
Indices: 63882770--63882804 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
63882760 TATTAATTAT
63882770 TAATTATTAA-TTATTGA
1 TAATTATTAATTTATTGA
63882787 TAATATATTAATTTATTG
1 TAAT-TATTAATTTATTG
63882805 TTTTTAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (18 bp):
TAATTATTAATTTATTGA
Found at i:63889448 original size:20 final size:21
Alignment explanation
Indices: 63889410--63889458 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 21
63889400 TTTTAAAAAT
63889410 ATTTTTATATTTACTTTTAAA
1 ATTTTTATATTTACTTTTAAA
63889431 ATTTTTA-ATTTA-TATTT-AA
1 ATTTTTATATTTACT-TTTAAA
*
63889450 CTTTTTATA
1 ATTTTTATA
63889459 ATCCATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.36
20 9 0.36
21 7 0.28
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTATATTTACTTTTAAA
Found at i:63890527 original size:14 final size:15
Alignment explanation
Indices: 63890508--63890539 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
63890498 CATGTTTCTC
63890508 TTTA-TTTTTAAATA
1 TTTATTTTTTAAATA
63890522 TTTATTTTTTAAATA
1 TTTATTTTTTAAATA
63890537 TTT
1 TTT
63890540 TACTAAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATTTTTTAAATA
Found at i:63891203 original size:21 final size:21
Alignment explanation
Indices: 63891162--63891206 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
63891152 AATTTTAAAA
63891162 TTTTTAATTTATATTTAACTT
1 TTTTTAATTTATATTTAACTT
63891183 TTTTATAATTTATATTT-ACTT
1 TTTT-TAATTTATATTTAACTT
63891204 TTT
1 TTT
63891207 CTCATCAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTTAATTTATATTTAACTT
Found at i:63894271 original size:13 final size:14
Alignment explanation
Indices: 63894235--63894269 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
63894225 AAATATCTTT
*
63894235 ATAAATAATATTTAA
1 ATAAA-AATATTAAA
63894250 ATAAAAATATTAAA
1 ATAAAAATATTAAA
63894264 ATAAAA
1 ATAAAA
63894270 TAATCGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
ATAAAAATATTAAA
Found at i:63899355 original size:30 final size:30
Alignment explanation
Indices: 63899314--63899395 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
63899304 AATATCTCGG
*
63899314 TACCTATATCTTTGACTTTCCAATATTTGA
1 TACCCATATCTTTGACTTTCCAATATTTGA
* *
63899344 TACCCATATCTTTGACTTTCTATTATTTGA
1 TACCCATATCTTTGACTTTCCAATATTTGA
*
63899374 TACCCATATCTTTGATTTTCCA
1 TACCCATATCTTTGACTTTCCA
63899396 TAAATATGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.24, C:0.22, G:0.06, T:0.48
Consensus pattern (30 bp):
TACCCATATCTTTGACTTTCCAATATTTGA
Found at i:63899357 original size:15 final size:15
Alignment explanation
Indices: 63899339--63899389 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
63899329 CTTTCCAATA
63899339 TTTGATACCCATATC
1 TTTGATACCCATATC
** * *
63899354 TTTGACTTTCTAT-TA
1 TTTGA-TACCCATATC
63899369 TTTGATACCCATATC
1 TTTGATACCCATATC
63899384 TTTGAT
1 TTTGAT
63899390 TTTCCATAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
14 4 0.15
15 18 0.69
16 4 0.15
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.49
Consensus pattern (15 bp):
TTTGATACCCATATC
Found at i:63904017 original size:30 final size:30
Alignment explanation
Indices: 63903981--63904062 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
63903971 AATATCTCGG
63903981 TACCCATATCTTTGACTTTCCAATATTTGA
1 TACCCATATCTTTGACTTTCCAATATTTGA
* *
63904011 TACCCATATCTTTGACTTTCTATTATTTGA
1 TACCCATATCTTTGACTTTCCAATATTTGA
* *
63904041 TACCCATATATTTGATTTTCCA
1 TACCCATATCTTTGACTTTCCA
63904063 TAAATATGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46
Consensus pattern (30 bp):
TACCCATATCTTTGACTTTCCAATATTTGA
Found at i:63904024 original size:15 final size:15
Alignment explanation
Indices: 63903981--63904056 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 15
63903971 AATATCTCGG
*
63903981 TACCCATATCTTTGA
1 TACCCATATATTTGA
**
63903996 CTTTCCA-ATATTTGA
1 -TACCCATATATTTGA
*
63904011 TACCCATATCTTTGA
1 TACCCATATATTTGA
** *
63904026 CTTTCTAT-TATTTGA
1 -TACCCATATATTTGA
63904041 TACCCATATATTTGA
1 TACCCATATATTTGA
63904056 T
1 T
63904057 TTTCCATAAA
Statistics
Matches: 44, Mismatches: 13, Indels: 7
0.69 0.20 0.11
Matches are distributed among these distances:
14 8 0.18
15 28 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.46
Consensus pattern (15 bp):
TACCCATATATTTGA
Found at i:63922030 original size:49 final size:49
Alignment explanation
Indices: 63921904--63922192 Score: 464
Period size: 49 Copynumber: 6.0 Consensus size: 49
63921894 CCCTTCGGGA
* * * * *
63921904 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63921951 CCTGTCAC--ATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63921998 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63922047 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63922094 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63922143 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63922192 C
1 C
63922193 ATACTATCAT
Statistics
Matches: 225, Mismatches: 11, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 89 0.40
49 135 0.60
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63922066 original size:96 final size:96
Alignment explanation
Indices: 63921904--63922192 Score: 474
Period size: 96 Copynumber: 3.0 Consensus size: 96
63921894 CCCTTCGGGA
* * * * * * *
63921904 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63921967 ACTTTCATATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
63921998 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63922063 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
63922094 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
63922159 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
63922192 C
1 C
63922193 ATACTATCAT
Statistics
Matches: 183, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 10 0.05
95 1 0.01
96 132 0.72
98 40 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63935074 original size:20 final size:20
Alignment explanation
Indices: 63935049--63935090 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
63935039 CTGTTAGAGT
63935049 TAATATAGTCAAAGCAGTTG
1 TAATATAGTCAAAGCAGTTG
*
63935069 TAATATAGTCAAAGCCGTTG
1 TAATATAGTCAAAGCAGTTG
63935089 TA
1 TA
63935091 CCGTTGTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
TAATATAGTCAAAGCAGTTG
Found at i:63935119 original size:15 final size:15
Alignment explanation
Indices: 63935099--63935129 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63935089 TACCGTTGTA
63935099 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
63935114 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
63935129 A
1 A
63935130 AAGATGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (15 bp):
AGTCTGTTAGCAGTT
Found at i:63939797 original size:20 final size:20
Alignment explanation
Indices: 63939772--63939813 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
63939762 ATGTTAGAGT
63939772 TAATATAGTCAAAGCAGTTG
1 TAATATAGTCAAAGCAGTTG
*
63939792 TAATATAGTCAAAGCCGTTG
1 TAATATAGTCAAAGCAGTTG
63939812 TA
1 TA
63939814 CCGTTGTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
TAATATAGTCAAAGCAGTTG
Found at i:63939842 original size:15 final size:15
Alignment explanation
Indices: 63939822--63939852 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63939812 TACCGTTGTA
63939822 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
63939837 AGTCTGTTAGCAGTT
1 AGTCTGTTAGCAGTT
63939852 A
1 A
63939853 AAGATGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (15 bp):
AGTCTGTTAGCAGTT
Found at i:63943046 original size:16 final size:16
Alignment explanation
Indices: 63943014--63943064 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
63943004 AAATTTTAAA
63943014 TATATTTTTTAAAAATTT
1 TATATTTTTT--AAATTT
63943032 TA-ATTTTTTATAATTT
1 TATATTTTTTA-AATTT
*
63943048 TATAATTTTTAAATTT
1 TATATTTTTTAAATTT
63943064 T
1 T
63943065 TTAACATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
15 1 0.03
16 13 0.43
17 14 0.47
18 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATATTTTTTAAATTT
Done.