Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 218 of 228
Found at i:63943048 original size:8 final size:8
Alignment explanation
Indices: 63943037--63943093 Score: 53
Period size: 8 Copynumber: 6.8 Consensus size: 8
63943027 AATTTTAATT
63943037 TTTTATAA
1 TTTTATAA
63943045 TTTTATAA
1 TTTTATAA
63943053 TTTT-TAAA
1 TTTTAT-AA
*
63943061 TTTTTTAACA
1 TTTTAT-A-A
*
63943071 TTTTGATAT
1 TTTT-ATAA
63943080 TTTTATAA
1 TTTTATAA
63943088 TTTTAT
1 TTTTAT
63943094 GTAATCAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
7 1 0.02
8 27 0.64
9 7 0.17
10 6 0.14
11 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TTTTATAA
Found at i:63943073 original size:26 final size:26
Alignment explanation
Indices: 63943020--63943091 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
63943010 TAAATATATT
* *
63943020 TTTTAAAAATTTT-AATTTTTTATAA
1 TTTTATAATTTTTAAATTTTTTATAA
63943045 TTTTATAATTTTTAAATTTTTTA-ACA
1 TTTTATAATTTTTAAATTTTTTATA-A
63943071 TTTTGAT-ATTTTTATAATTTT
1 TTTT-ATAATTTTTA-AATTTT
63943092 ATGTAATCAG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.29
26 21 0.51
27 8 0.20
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (26 bp):
TTTTATAATTTTTAAATTTTTTATAA
Found at i:63949668 original size:17 final size:17
Alignment explanation
Indices: 63949646--63949680 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63949636 ACCATTTCTT
63949646 ACTTTCTCCATCCCATA
1 ACTTTCTCCATCCCATA
*
63949663 ACTTTCTTCATCCCATA
1 ACTTTCTCCATCCCATA
63949680 A
1 A
63949681 TTGCCATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.37, G:0.00, T:0.37
Consensus pattern (17 bp):
ACTTTCTCCATCCCATA
Found at i:63952923 original size:27 final size:27
Alignment explanation
Indices: 63952891--63952950 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
63952881 TATTGCACTG
63952891 AAATTATTTATATATGTATTTTGTGAC
1 AAATTATTTATATATGTATTTTGTGAC
63952918 AAATTATTTATATATGTATTTTGTGAC
1 AAATTATTTATATATGTATTTTGTGAC
63952945 AAATTA
1 AAATTA
63952951 ATTGTAGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.50
Consensus pattern (27 bp):
AAATTATTTATATATGTATTTTGTGAC
Found at i:63955918 original size:3 final size:3
Alignment explanation
Indices: 63955910--63955949 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
63955900 AATTGAACAC
63955910 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
63955950 GAAATGTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:63959227 original size:20 final size:20
Alignment explanation
Indices: 63959204--63959241 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
63959194 AAAAAATCTA
63959204 AAAATAAGGTTTAAAAGGGG
1 AAAATAAGGTTTAAAAGGGG
*
63959224 AAAATAAGGTTTGAAAGG
1 AAAATAAGGTTTAAAAGG
63959242 AGATGTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (20 bp):
AAAATAAGGTTTAAAAGGGG
Found at i:63960929 original size:26 final size:24
Alignment explanation
Indices: 63960900--63960959 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
63960890 AAAAATATTT
63960900 ATTTTATTTTATTTTAATATTTAATA
1 ATTTTATTTTATTTT--TATTTAATA
**
63960926 ATTTTA-TACATTTTTATTTAATA
1 ATTTTATTTTATTTTTATTTAATA
63960949 ATTTT-TTTTAT
1 ATTTTATTTTAT
63960960 ATAGTCATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
23 17 0.59
25 6 0.21
26 6 0.21
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (24 bp):
ATTTTATTTTATTTTTATTTAATA
Found at i:63961745 original size:20 final size:21
Alignment explanation
Indices: 63961707--63961746 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63961697 TTTAAAATTT
*
63961707 TAATTTATATTTAACTTTTTA
1 TAATTCATATTTAACTTTTTA
63961728 TAATTCATATTT-ACTTTTT
1 TAATTCATATTTAACTTTTT
63961747 CTTATCAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATTCATATTTAACTTTTTA
Found at i:63964554 original size:112 final size:111
Alignment explanation
Indices: 63964426--63964645 Score: 307
Period size: 112 Copynumber: 2.0 Consensus size: 111
63964416 GTCAGGCGGC
* * * * * * *
63964426 ACCCTTAAGCGCTTTTTCGGTTGCCAATTAAGAAAGGAAATTTGCATATGAGGTCCCTAGAATTT
1 ACCCTTAAGCGCTTTTTCAGTTGCCAATTAAAAAAGAAAATTTACAGATAAGGTCCCTAAAATTT
*
63964491 TTAGATCATCACATTTTAGTCA-AGTGCTGCCAACATGTCAAGCAAG
66 TTAGATCATCACATTTTAGTCAGA-TGCCGCCAACATGTCAAGCAAG
* *
63964537 ACCCTTCAAGCGTTTTTTCAGTTGCCAATTAAAAAAGAAAATTTACAGATAAGGTCTCTAAAATT
1 ACCCTT-AAGCGCTTTTTCAGTTGCCAATTAAAAAAGAAAATTTACAGATAAGGTCCCTAAAATT
* *
63964602 TTTAGATCATCACATTTTAGTCTGATGCCGCCAATATGTCAAGC
65 TTTAGATCATCACATTTTAGTCAGATGCCGCCAACATGTCAAGC
63964646 GACACCGTCA
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
111 6 0.06
112 88 0.93
113 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (111 bp):
ACCCTTAAGCGCTTTTTCAGTTGCCAATTAAAAAAGAAAATTTACAGATAAGGTCCCTAAAATTT
TTAGATCATCACATTTTAGTCAGATGCCGCCAACATGTCAAGCAAG
Found at i:63964722 original size:27 final size:28
Alignment explanation
Indices: 63964677--63964729 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
63964667 CAAATGCCTA
* *
63964677 TTTTCGTAATTATTCTATTTTCTATACT
1 TTTTCATAATTAGTCTATTTTCTATACT
*
63964705 TTTTCATAATTAGT-TATTTTTTATA
1 TTTTCATAATTAGTCTATTTTCTATA
63964730 TTATTTAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.25, C:0.09, G:0.04, T:0.62
Consensus pattern (28 bp):
TTTTCATAATTAGTCTATTTTCTATACT
Found at i:63965616 original size:64 final size:64
Alignment explanation
Indices: 63965515--63965645 Score: 262
Period size: 64 Copynumber: 2.0 Consensus size: 64
63965505 AAGTAGACGC
63965515 ATTTAACTAAAGCAGGCCCATGACAGTGATAGAATACGATCATATCATTATTCTAAAACTATAT
1 ATTTAACTAAAGCAGGCCCATGACAGTGATAGAATACGATCATATCATTATTCTAAAACTATAT
63965579 ATTTAACTAAAGCAGGCCCATGACAGTGATAGAATACGATCATATCATTATTCTAAAACTATAT
1 ATTTAACTAAAGCAGGCCCATGACAGTGATAGAATACGATCATATCATTATTCTAAAACTATAT
63965643 ATT
1 ATT
63965646 GCACTCTGCT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (64 bp):
ATTTAACTAAAGCAGGCCCATGACAGTGATAGAATACGATCATATCATTATTCTAAAACTATAT
Found at i:63969122 original size:20 final size:20
Alignment explanation
Indices: 63969097--63969146 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63969087 TGGCTTAAAA
63969097 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63969117 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63969134 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63969147 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63973761 original size:20 final size:20
Alignment explanation
Indices: 63973736--63973785 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63973726 TGGCTTAAAA
63973736 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63973756 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63973773 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63973786 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63975218 original size:20 final size:21
Alignment explanation
Indices: 63975180--63975228 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 21
63975170 TTTTAAAAAT
63975180 ATTTTTATATTTACTTTTAAA
1 ATTTTTATATTTACTTTTAAA
63975201 ATTTTTA-ATTTA-TATTT-AA
1 ATTTTTATATTTACT-TTTAAA
*
63975220 CTTTTTATA
1 ATTTTTATA
63975229 ATCCATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.36
20 9 0.36
21 7 0.28
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTATATTTACTTTTAAA
Found at i:63976297 original size:14 final size:14
Alignment explanation
Indices: 63976278--63976308 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
63976268 CATGTTTCTC
63976278 TTTATTTTTAAATA
1 TTTATTTTTAAATA
63976292 TTTATTTTTAAATA
1 TTTATTTTTAAATA
63976306 TTT
1 TTT
63976309 TACTATACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTATTTTTAAATA
Found at i:63976971 original size:21 final size:21
Alignment explanation
Indices: 63976930--63976974 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
63976920 AATTTTAAAA
63976930 TTTTTAATTTATATTTAACTT
1 TTTTTAATTTATATTTAACTT
63976951 TTTTATAATTTATATTT-ACTT
1 TTTT-TAATTTATATTTAACTT
63976972 TTT
1 TTT
63976975 CTCATCAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTTAATTTATATTTAACTT
Found at i:63980031 original size:15 final size:15
Alignment explanation
Indices: 63980013--63980052 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
63980003 AAATATCTTT
*
63980013 ATAAATAATATTTAA
1 ATAAATAATATTAAA
*
63980028 ATAAAAAATATTAAA
1 ATAAATAATATTAAA
63980043 ATAAAATAAT
1 AT-AAATAAT
63980053 CGTAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAATAATATTAAA
Found at i:63986483 original size:19 final size:19
Alignment explanation
Indices: 63986444--63986483 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63986434 CAATATGGCA
**
63986444 GGTGTAGTCAATTACGTTG
1 GGTGTAGTCAATTACACTG
*
63986463 GGTGTAGTTAATTACACTG
1 GGTGTAGTCAATTACACTG
63986482 GG
1 GG
63986484 CTTAGACAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.33, T:0.35
Consensus pattern (19 bp):
GGTGTAGTCAATTACACTG
Found at i:63998016 original size:9 final size:9
Alignment explanation
Indices: 63997998--63998042 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 9
63997988 CCAAATAAGT
63997998 AAAATAAAAG
1 AAAAT-AAAG
63998008 AAAATAAAG
1 AAAATAAAG
*
63998017 -TAATAAAG
1 AAAATAAAG
63998025 AAAATAAAG
1 AAAATAAAG
63998034 AAAAATAAA
1 -AAAATAAA
63998043 AAATAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 7 0.23
9 11 0.35
10 13 0.42
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (9 bp):
AAAATAAAG
Found at i:63998055 original size:27 final size:27
Alignment explanation
Indices: 63997990--63998055 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
63997980 ATTAATATCC
*
63997990 AAATAAGTAAAATAAAAGAAAATAAAG
1 AAATAAATAAAATAAAAGAAAATAAAG
* *
63998017 TAATAAAGAAAAT-AAAGAAAAATAAA-
1 AAATAAATAAAATAAAAG-AAAATAAAG
63998043 AAATAAAATAAAA
1 AAAT-AAATAAAA
63998056 ATTGGGTTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 7 0.22
27 25 0.78
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (27 bp):
AAATAAATAAAATAAAAGAAAATAAAG
Found at i:64011044 original size:71 final size:71
Alignment explanation
Indices: 64010928--64011087 Score: 239
Period size: 71 Copynumber: 2.3 Consensus size: 71
64010918 AATACTTCGT
* * *
64010928 TTTTGTCTTCGCATCATAACTCATAAGCTACTAGATTGTGATGAAGTCAGACTATAAATAACAAT
1 TTTTGTCTTTGCATCTTAACTCATAAGCTACTAGATTATGATGAAGTCAGACTATAAATAACAAT
64010993 GTTGAA
66 GTTGAA
* * *
64010999 TTTTGTCTTTGCATCTTAACTCATAAGCTAGTAGATTATGATGAAGTCAGACTTTAAATAACAGT
1 TTTTGTCTTTGCATCTTAACTCATAAGCTACTAGATTATGATGAAGTCAGACTATAAATAACAAT
*
64011064 GTTGGA
66 GTTGAA
**
64011070 TTTTAACTTTGCATCTTA
1 TTTTGTCTTTGCATCTTA
64011088 TTGTATCAGT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 80 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (71 bp):
TTTTGTCTTTGCATCTTAACTCATAAGCTACTAGATTATGATGAAGTCAGACTATAAATAACAAT
GTTGAA
Found at i:64018902 original size:18 final size:18
Alignment explanation
Indices: 64018879--64018971 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
64018869 CCCAACTACT
*
64018879 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
64018897 GTATACATGAATAGTGCC
1 GTATACGTGAATAGTACC
*
64018915 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
64018933 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
64018951 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
64018969 GTA
1 GTA
64018972 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:64018931 original size:36 final size:36
Alignment explanation
Indices: 64018879--64018971 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
64018869 CCCAACTACT
*
64018879 GTATACGTGAACAGTACCGTATACATGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACATGAATAGTGCC
* *
64018915 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACATGAATAGTGCC
*
64018951 ATATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
64018972 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACATGAATAGTGCC
Found at i:64024260 original size:15 final size:16
Alignment explanation
Indices: 64024240--64024269 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64024230 AACCAAAACA
64024240 TTTTTTTAT-ATTTAC
1 TTTTTTTATAATTTAC
64024255 TTTTTTTATAATTTA
1 TTTTTTTATAATTTA
64024270 TATTTAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTTTATAATTTAC
Found at i:64024668 original size:11 final size:11
Alignment explanation
Indices: 64024654--64024680 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
64024644 TATTTAATTT
64024654 TAATTTTTTTA
1 TAATTTTTTTA
64024665 TAATTTTTTTA
1 TAATTTTTTTA
64024676 TAATT
1 TAATT
64024681 AGGACTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TAATTTTTTTA
Found at i:64029905 original size:6 final size:6
Alignment explanation
Indices: 64029896--64029925 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
64029886 GCTAGTGGTG
64029896 GTGGCA GTGGCA GTGGCA GTGGCA GTGGCA
1 GTGGCA GTGGCA GTGGCA GTGGCA GTGGCA
64029926 AGCTTAGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (6 bp):
GTGGCA
Found at i:64032557 original size:24 final size:24
Alignment explanation
Indices: 64032529--64032576 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
64032519 CTTGATGATG
64032529 AGCCACAAACTCTCAAATACGAAT
1 AGCCACAAACTCTCAAATACGAAT
64032553 AGCCACAAACTCTCAAATACGAAT
1 AGCCACAAACTCTCAAATACGAAT
64032577 CAATCTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.29, G:0.08, T:0.17
Consensus pattern (24 bp):
AGCCACAAACTCTCAAATACGAAT
Found at i:64036562 original size:71 final size:71
Alignment explanation
Indices: 64036433--64036592 Score: 266
Period size: 71 Copynumber: 2.3 Consensus size: 71
64036423 AATACTTCGT
* * *
64036433 TTTTTTCTTGGCATCATAACTCATAAGCTACTAGATTGTGATGAAGTCAGACTATAAATAACAAT
1 TTTTGTCTTTGCATCTTAACTCATAAGCTACTAGATTGTGATGAAGTCAGACTATAAATAACAAT
64036498 GTTGGA
66 GTTGGA
* *
64036504 TTTTGTCTTTGCATCTTAACTCATAAGCTAGTAGATTGTGATGAAGTCAGACTTTAAATAACAAT
1 TTTTGTCTTTGCATCTTAACTCATAAGCTACTAGATTGTGATGAAGTCAGACTATAAATAACAAT
64036569 GTTGGA
66 GTTGGA
*
64036575 TTTTGACTTTGCATCTTA
1 TTTTGTCTTTGCATCTTA
64036593 TTGTATCAGT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 83 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (71 bp):
TTTTGTCTTTGCATCTTAACTCATAAGCTACTAGATTGTGATGAAGTCAGACTATAAATAACAAT
GTTGGA
Found at i:64038354 original size:3 final size:3
Alignment explanation
Indices: 64038346--64038370 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
64038336 AATTGAACAC
64038346 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
64038371 GAAATGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:64047167 original size:20 final size:20
Alignment explanation
Indices: 64047142--64047182 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
64047132 AAAAATTCTA
64047142 AAAATAAGGTTTAAAAGGAG
1 AAAATAAGGTTTAAAAGGAG
64047162 AAAATAAGGTTTAAAAGGAG
1 AAAATAAGGTTTAAAAGGAG
64047182 A
1 A
64047183 TGTATATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (20 bp):
AAAATAAGGTTTAAAAGGAG
Found at i:64047988 original size:44 final size:44
Alignment explanation
Indices: 64047938--64048025 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
64047928 TATTTATTTT
64047938 TACTTAACACAAAGCGAATTAGCTTATGAATTTAATTAAAGATA
1 TACTTAACACAAAGCGAATTAGCTTATGAATTTAATTAAAGATA
64047982 TACTTAACACAAAGCGAATTAGCTTATGAATTTAATTAAAGATA
1 TACTTAACACAAAGCGAATTAGCTTATGAATTTAATTAAAGATA
64048026 AATTACACGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (44 bp):
TACTTAACACAAAGCGAATTAGCTTATGAATTTAATTAAAGATA
Found at i:64051524 original size:24 final size:25
Alignment explanation
Indices: 64051495--64051550 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 25
64051485 CTTCAAAAAT
*
64051495 TATTTTTATTTAATTACAA-TA-TA
1 TATTTTTATTTAATTAAAACTATTA
*
64051518 TATTTTTATTTTATTAAAACTATTTA
1 TATTTTTATTTAATTAAAACTA-TTA
64051544 TATTTTT
1 TATTTTT
64051551 TTACAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 17 0.61
24 2 0.07
26 9 0.32
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (25 bp):
TATTTTTATTTAATTAAAACTATTA
Found at i:64055339 original size:21 final size:21
Alignment explanation
Indices: 64055313--64055372 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
64055303 AGAACACTTC
64055313 AACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
64055334 AACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTGAGAGCTG
* *
64055355 AACAAAAGCTCGTAAGAG
1 AACAGAAGCTCGTGAGAG
64055373 TTGATCCACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.13
Consensus pattern (21 bp):
AACAGAAGCTCGTGAGAGCTG
Found at i:64058455 original size:30 final size:31
Alignment explanation
Indices: 64058390--64058455 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
64058380 AAAAAATTTC
64058390 AATAA-ATAAAAAATGTATAAAATAATATAA
1 AATAATATAAAAAATGTATAAAATAATATAA
* * *
64058420 TATAATATAAAAAAT-TTTAAAA-AATTTAAA
1 AATAATATAAAAAATGTATAAAATAATAT-AA
64058450 AATAAT
1 AATAAT
64058456 CAGGATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 4 0.13
30 17 0.57
31 9 0.30
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (31 bp):
AATAATATAAAAAATGTATAAAATAATATAA
Found at i:64062904 original size:3 final size:3
Alignment explanation
Indices: 64062898--64062958 Score: 95
Period size: 3 Copynumber: 20.3 Consensus size: 3
64062888 TTAAATGAGT
* *
64062898 TTA TTA TTA TTA TTA TTA TTA TCA TTA TCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
64062946 TTA TTA TTG TTA T
1 TTA TTA TTA TTA T
64062959 GTCTGAACTC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:64074970 original size:26 final size:25
Alignment explanation
Indices: 64074932--64074980 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
64074922 TTTTAGACCA
**
64074932 AAATTTATTATTTTTATTCATTTGGT
1 AAATTTAGGATTTTT-TTCATTTGGT
*
64074958 AAATTTAGGATTTTTTTTATTTG
1 AAATTTAGGATTTTTTTCATTTG
64074981 TGAGGAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (25 bp):
AAATTTAGGATTTTTTTCATTTGGT
Found at i:64079284 original size:21 final size:22
Alignment explanation
Indices: 64079258--64079304 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
64079248 CTCTGCTCAA
*
64079258 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
64079279 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
64079301 ACTC
1 ACTC
64079305 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:64083913 original size:23 final size:22
Alignment explanation
Indices: 64083862--64083906 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
64083852 GGTAAAGTGC
*
64083862 AATTTAACTATATATTAATTTGT
1 AATTTAACTATATATT-ATTTAT
64083885 AATTTAACTATATATT-TTTAT
1 AATTTAACTATATATTATTTAT
64083906 A
1 A
64083907 TGATTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
23 16 0.76
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (22 bp):
AATTTAACTATATATTATTTAT
Found at i:64085832 original size:16 final size:17
Alignment explanation
Indices: 64085801--64086213 Score: 84
Period size: 18 Copynumber: 23.8 Consensus size: 17
64085791 TTTTTTTGTT
*
64085801 TTTTA-AAAAACG-AAA
1 TTTTAGAAACACGAAAA
64085816 TTTTAG-AACACGAAAA
1 TTTTAGAAACACGAAAA
**
64085832 TTTTAGAAACACGAATTTT
1 TTTTAGAAACACGAA--AA
*
64085851 TTTTA-AAACACGACAA
1 TTTTAGAAACACGAAAA
* *
64085867 TTTTTGAAACACGAGAA
1 TTTTAGAAACACGAAAA
** *
64085884 TTTTTCAAA-AC-ACAA
1 TTTTAGAAACACGAAAA
* * * *
64085899 TTTAAAAAAAACATGACAA
1 TTT--TAGAAACACGAAAA
** * *
64085918 TTTGT-GAAACATTAGAG
1 TTT-TAGAAACACGAAAA
* *
64085935 TCATT-GAAAACACGGAAA
1 T-TTTAG-AAACACGAAAA
* *
64085953 TTTGT-GAAAAAACGAAAT
1 TTT-TAG-AAACACGAAAA
* *
64085971 TTTTTGAAACACAGAAAT
1 TTTTAGAAACAC-GAAAA
64085989 TTTTAGAAAACACGAAAA
1 TTTTAG-AAACACGAAAA
* *
64086007 TTTT-GAATCACCG-GAA
1 TTTTAGAAACA-CGAAAA
* *
64086023 TTTTTGAAAACACGAAGA
1 TTTTAG-AAACACGAAAA
*
64086041 TTTTTGAAACATCG-AAA
1 TTTTAGAAACA-CGAAAA
* **
64086058 TTTTTGAAAACACGTGAA
1 TTTTAG-AAACACGAAAA
* *
64086076 TTTTTGAAACAC-AAATTTT
1 TTTTAGAAACACGAAA---A
* *
64086095 TTTTTGAAAATACGAAAA
1 TTTTAG-AAACACGAAAA
* *
64086113 TTTTTGAAAACACAGAAAT
1 TTTTAG-AAACAC-GAAAA
* **
64086132 TTTTA-AAACAAGGGAA
1 TTTTAGAAACACGAAAA
*
64086148 TTTTTGAAACACTG-AAA
1 TTTTAGAAACAC-GAAAA
* *
64086165 TTTTTGAAAACACGAGAATT
1 TTTTAG-AAACACGA-AA-A
*
64086185 TTTTA-AAACACAAAAA
1 TTTTAGAAACACGAAAA
*
64086201 TTTTTGAAACACG
1 TTTTAGAAACACG
64086214 GGAATTTTTT
Statistics
Matches: 301, Mismatches: 61, Indels: 70
0.70 0.14 0.16
Matches are distributed among these distances:
15 16 0.05
16 36 0.12
17 101 0.34
18 102 0.34
19 34 0.11
20 9 0.03
21 3 0.01
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (17 bp):
TTTTAGAAACACGAAAA
Found at i:64085844 original size:17 final size:17
Alignment explanation
Indices: 64085800--64086213 Score: 193
Period size: 17 Copynumber: 23.8 Consensus size: 17
64085790 TTTTTTTTGT
* *
64085800 TTTTTAAAAAACG-AAA
1 TTTTTGAAACACGAAAA
*
64085816 TTTTAG-AACACGAAAA
1 TTTTTGAAACACGAAAA
* **
64085832 TTTTAGAAACACGAATTT
1 TTTTTGAAACACGAA-AA
* *
64085850 TTTTTAAAACACGACAA
1 TTTTTGAAACACGAAAA
*
64085867 TTTTTGAAACACGAGAA
1 TTTTTGAAACACGAAAA
* *
64085884 TTTTTCAAA-AC-ACAA
1 TTTTTGAAACACGAAAA
*** * *
64085899 TTTAAAAAAAACATGACAA
1 TTT--TTGAAACACGAAAA
* ** * *
64085918 TTTGTGAAACATTAGAG
1 TTTTTGAAACACGAAAA
** *
64085935 TCATTGAAAACACGGAAA
1 TTTTTG-AAACACGAAAA
* * *
64085953 TTTGTGAAAAAACGAAAT
1 TTTTTG-AAACACGAAAA
64085971 TTTTTGAAACAC-AGAAA
1 TTTTTGAAACACGA-AAA
64085988 TTTTTAGAAAACACGAAAA
1 TTTTT-G-AAACACGAAAA
* *
64086007 -TTTTGAATCACCG-GAA
1 TTTTTGAAACA-CGAAAA
*
64086023 TTTTTGAAAACACGAAGA
1 TTTTTG-AAACACGAAAA
64086041 TTTTTGAAACATCG-AAA
1 TTTTTGAAACA-CGAAAA
**
64086058 TTTTTGAAAACACGTGAA
1 TTTTTG-AAACACGAAAA
*
64086076 TTTTTGAAACAC-AAATTTT
1 TTTTTGAAACACGAAA---A
*
64086095 TTTTTGAAAATACGAAAA
1 TTTTTG-AAACACGAAAA
64086113 TTTTTGAAAACAC-AGAAA
1 TTTTTG-AAACACGA-AAA
* * **
64086131 TTTTTAAAACAAGGGAA
1 TTTTTGAAACACGAAAA
64086148 TTTTTGAAACACTG-AAA
1 TTTTTGAAACAC-GAAAA
*
64086165 TTTTTGAAAACACGAGAAT
1 TTTTTG-AAACACGA-AAA
* *
64086184 TTTTTAAAACACAAAAA
1 TTTTTGAAACACGAAAA
64086201 TTTTTGAAACACG
1 TTTTTGAAACACG
64086214 GGAATTTTTT
Statistics
Matches: 301, Mismatches: 67, Indels: 59
0.70 0.16 0.14
Matches are distributed among these distances:
15 11 0.04
16 23 0.08
17 128 0.43
18 101 0.34
19 29 0.10
20 6 0.02
21 3 0.01
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:64085888 original size:35 final size:35
Alignment explanation
Indices: 64085816--64086222 Score: 191
Period size: 35 Copynumber: 11.6 Consensus size: 35
64085806 AAAAACGAAA
* * * *
64085816 TTTTAGAACACGAAAATTTTAGAAACACGA-ATTTT
1 TTTTAAAACACGAGAATTTTTGAAACACGAGA-ATT
*
64085851 TTTTAAAACACGACAATTTTTGAAACACGAGAATT
1 TTTTAAAACACGAGAATTTTTGAAACACGAGAATT
* *** * *
64085886 TTTCAAAACAC---AATTTAAAAAAAAC-ATGACAAT
1 TTTTAAAACACGAGAATTTTTGAAACACGA-GA-ATT
* * ** * **
64085919 TTGTGAAACATTAGAGTCATTGAAAACACG-GAAATT
1 TTTTAAAACACGAGAATTTTTG-AAACACGAG-AATT
* * *
64085955 TGTGAAAAAACGA-AATTTTTTGAAACAC-AGAAATT
1 TTTTAAAACACGAGAA-TTTTTGAAACACGAG-AATT
* * *
64085990 TTTAGAAAACACGA-AAATTTTGAATCACCG-GAATT
1 TTT-TAAAACACGAGAATTTTTGAAACA-CGAGAATT
*
64086025 TTTGAAAACACGA-AGATTTTTGAAACATCGA-AATT
1 TTTTAAAACACGAGA-ATTTTTGAAACA-CGAGAATT
* *
64086060 TTTGAAAACACGTGAATTTTTGAAACAC-A-AATTTTT
1 TTTTAAAACACGAGAATTTTTGAAACACGAGAA---TT
* * *
64086096 TTTTGAAAATACGAAAATTTTTGAAAACAC-AGAAAT
1 TTTT-AAAACACGAGAATTTTTG-AAACACGAGAATT
* *
64086132 TTTTAAAACAAGGGAATTTTTGAAACACTGA-AATT
1 TTTTAAAACACGAGAATTTTTGAAACAC-GAGAATT
* * * *
64086167 TTTGAAAACACGAGAATTTTTTAAAACAC-AAAAAT
1 TTTTAAAACACGAGAA-TTTTTGAAACACGAGAATT
* *
64086202 TTTTGAAACACGGGAATTTTT
1 TTTTAAAACACGAGAATTTTT
64086223 TTTTACACAA
Statistics
Matches: 287, Mismatches: 58, Indels: 55
0.72 0.14 0.14
Matches are distributed among these distances:
31 1 0.00
32 12 0.04
33 12 0.04
34 24 0.08
35 156 0.54
36 52 0.18
37 21 0.07
38 7 0.02
39 2 0.01
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (35 bp):
TTTTAAAACACGAGAATTTTTGAAACACGAGAATT
Found at i:64085960 original size:18 final size:18
Alignment explanation
Indices: 64085938--64086222 Score: 224
Period size: 18 Copynumber: 16.1 Consensus size: 18
64085928 ATTAGAGTCA
64085938 TTGAAAACACGGAAATTT
1 TTGAAAACACGGAAATTT
* *
64085956 GTGAAAAAAC-GAAATTTT
1 TTGAAAACACGGAAA-TTT
*
64085974 TTG-AAACACAGAAATTT
1 TTGAAAACACGGAAATTT
*
64085991 TTAGAAAACAC-GAAAATT
1 TT-GAAAACACGGAAATTT
*
64086009 TTG-AATCACCGG-AATTT
1 TTGAAAACA-CGGAAATTT
64086026 TTGAAAACAC-GAAGATTT
1 TTGAAAACACGGAA-ATTT
64086044 TTG-AAACATC-GAAATTT
1 TTGAAAACA-CGGAAATTT
64086061 TTGAAAACACGTG-AATTT
1 TTGAAAACACG-GAAATTT
64086079 TTG-AAACAC--AAATTTTTTT
1 TTGAAAACACGGAAA----TTT
* *
64086098 TTGAAAATACGAAAATTT
1 TTGAAAACACGGAAATTT
*
64086116 TTGAAAACACAGAAATTT
1 TTGAAAACACGGAAATTT
* *
64086134 TT-AAAACAAGGGAATTT
1 TTGAAAACACGGAAATTT
*
64086151 TTG-AAACACTGAAATTT
1 TTGAAAACACGGAAATTT
64086168 TTGAAAACAC-GAGAATTT
1 TTGAAAACACGGA-AATTT
* **
64086186 TTTAAAACACAAAAATTT
1 TTGAAAACACGGAAATTT
*
64086204 TTG-AAACACGGGAATTT
1 TTGAAAACACGGAAATTT
64086221 TT
1 TT
64086223 TTTTACACAA
Statistics
Matches: 218, Mismatches: 24, Indels: 51
0.74 0.08 0.17
Matches are distributed among these distances:
15 2 0.01
16 5 0.02
17 87 0.40
18 102 0.47
19 14 0.06
20 5 0.02
22 3 0.01
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (18 bp):
TTGAAAACACGGAAATTT
Found at i:64086223 original size:35 final size:36
Alignment explanation
Indices: 64085941--64086223 Score: 199
Period size: 35 Copynumber: 8.0 Consensus size: 36
64085931 AGAGTCATTG
** * *
64085941 AAAACACGGAAATTTGTGAAAAAACGA-AATTTTTT
1 AAAACACAAAAATTTTTGAAAACACGAGAATTTTTT
* * *
64085976 GAAACACAGAAATTTTTAGAAAACACGA-AA-ATTTT
1 AAAACACAAAAATTTTT-GAAAACACGAGAATTTTTT
* * ***
64086011 GAATCACCGGAATTTTTGAAAACACGA-AGA-TTTTT
1 AAAACACAAAAATTTTTGAAAACACGAGA-ATTTTTT
* * *
64086046 GAAACATC-GAAATTTTTGAAAACACGTGAA-TTTTT
1 AAAACA-CAAAAATTTTTGAAAACACGAGAATTTTTT
* ** * * *
64086081 GAAACACAAATTTTTTTTTGAAAATACGAAAATTTTTG
1 AAAACACAAA--AATTTTTGAAAACACGAGAATTTTTT
* * *
64086119 AAAACACAGAAATTTTT-AAAACAAGGGAA-TTTTT
1 AAAACACAAAAATTTTTGAAAACACGAGAATTTTTT
* **
64086153 GAAACACTGAAATTTTTGAAAACACGAGAATTTTTT
1 AAAACACAAAAATTTTTGAAAACACGAGAATTTTTT
*
64086189 AAAACACAAAAATTTTTG-AAACACGGGAATTTTTT
1 AAAACACAAAAATTTTTGAAAACACGAGAATTTTTT
64086224 TTTACACAAA
Statistics
Matches: 202, Mismatches: 36, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
34 31 0.15
35 106 0.52
36 38 0.19
37 15 0.07
38 12 0.06
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (36 bp):
AAAACACAAAAATTTTTGAAAACACGAGAATTTTTT
Found at i:64086777 original size:17 final size:16
Alignment explanation
Indices: 64086735--64086779 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
64086725 ACAAATTGAA
*
64086735 CCTTTTTTTCCTTTTT
1 CCTTTTTTTCTTTTTT
64086751 CCTTTTTTTCTTTTTT
1 CCTTTTTTTCTTTTTT
64086767 CTCTTTTTTTCTT
1 C-CTTTTTTTCTT
64086780 CCCTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
CCTTTTTTTCTTTTTT
Found at i:64086788 original size:15 final size:13
Alignment explanation
Indices: 64086769--64086802 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
64086759 TCTTTTTTCT
64086769 CTTTTTTTCTTCC
1 CTTTTTTTCTTCC
*
64086782 CTTTTTTTCTTCT
1 CTTTTTTTCTTCC
64086795 CTTTTTTT
1 CTTTTTTT
64086803 TTCTGGCCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
CTTTTTTTCTTCC
Found at i:64086799 original size:10 final size:8
Alignment explanation
Indices: 64086736--64086779 Score: 61
Period size: 8 Copynumber: 5.4 Consensus size: 8
64086726 CAAATTGAAC
64086736 CTTTTTTT
1 CTTTTTTT
* *
64086744 CCTTTTTC
1 CTTTTTTT
64086752 CTTTTTTT
1 CTTTTTTT
64086760 CTTTTTTCT
1 CTTTTTT-T
64086769 CTTTTTTT
1 CTTTTTTT
64086777 CTT
1 CTT
64086780 CCCTTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
8 23 0.74
9 8 0.26
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (8 bp):
CTTTTTTT
Found at i:64087106 original size:4 final size:4
Alignment explanation
Indices: 64087097--64087165 Score: 60
Period size: 4 Copynumber: 18.5 Consensus size: 4
64087087 TTTCCTCCTT
* *
64087097 TTTC TTTC -TTC -TTC -TTC -TTC TTTC -TTC TTTC TCTC TTTT TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T-TTC
*
64087141 TTT- TTTC TTTC TTAC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TT
64087166 CCTCCCCGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
3 18 0.33
4 34 0.62
5 3 0.05
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTC
Found at i:64087138 original size:27 final size:27
Alignment explanation
Indices: 64087097--64087149 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
64087087 TTTCCTCCTT
*
64087097 TTTCTTTCTTCTTCTTCTTCTTTCTTC
1 TTTCTCTCTTCTTCTTCTTCTTTCTTC
* *
64087124 TTTCTCTCTTTTTCTTCTTTTTTCTT
1 TTTCTCTCTTCTTCTTCTTCTTTCTT
64087150 TCTTACTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (27 bp):
TTTCTCTCTTCTTCTTCTTCTTTCTTC
Found at i:64087158 original size:8 final size:7
Alignment explanation
Indices: 64087094--64087161 Score: 66
Period size: 7 Copynumber: 9.0 Consensus size: 7
64087084 TTTTTTCCTC
64087094 CTTT-TT
1 CTTTCTT
64087100 CTTTCTT
1 CTTTCTT
64087107 CTTCTTCTT
1 C-T-TTCTT
64087116 CTTTCTT
1 CTTTCTT
64087123 CTTTCTCT
1 CTTTCT-T
64087131 CTTTTTCTT
1 C--TTTCTT
*
64087140 CTTTTTT
1 CTTTCTT
64087147 CTTTCTT
1 CTTTCTT
64087154 ACTTTCTT
1 -CTTTCTT
64087162 TCTTCCTCCC
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
6 4 0.08
7 25 0.47
8 11 0.21
9 8 0.15
10 5 0.09
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.72
Consensus pattern (7 bp):
CTTTCTT
Found at i:64087163 original size:16 final size:15
Alignment explanation
Indices: 64087097--64087165 Score: 74
Period size: 17 Copynumber: 4.7 Consensus size: 15
64087087 TTTCCTCCTT
64087097 TTTCTTTC-TTCTTC
1 TTTCTTTCTTTCTTC
64087111 -TTC-TTCTTTCTTC
1 TTTCTTTCTTTCTTC
*
64087124 TTTCTCTCTTTTTCTTC
1 TTTCT-T-TCTTTCTTC
64087141 TTT-TTTCTTTCTTAC
1 TTTCTTTCTTTCTT-C
64087156 TTTCTTTCTT
1 TTTCTTTCTT
64087166 CCTCCCCGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
12 3 0.07
13 9 0.20
14 10 0.22
15 5 0.11
16 8 0.17
17 11 0.24
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTCTTTCTTTCTTC
Found at i:64087717 original size:30 final size:30
Alignment explanation
Indices: 64087669--64087805 Score: 113
Period size: 30 Copynumber: 4.6 Consensus size: 30
64087659 GTAATTTTAT
* *
64087669 AAAGTTTAGAGGTTAAAATATAATTTGGAGA
1 AAAGTTTAGGGGTCAAAATATAATTT-GAGA
* * *
64087700 ACA-TTTAGGGGTCAAAATGTAATTT-AAA
1 AAAGTTTAGGGGTCAAAATATAATTTGAGA
** *
64087728 AAAGTTTAGGGGTTGAAGTATAATTTTGAG-
1 AAAGTTTAGGGGTCAAAATATAA-TTTGAGA
* *
64087758 AAAGTTTAGGGATCAAAATGA-AATTTTAGA
1 AAAGTTTAGGGGTCAAAAT-ATAATTTGAGA
*
64087788 AAATTTTA-GGGTCAAAAT
1 AAAGTTTAGGGGTCAAAAT
64087806 GCAAAAAAAT
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
28 4 0.05
29 29 0.35
30 46 0.55
31 4 0.05
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (30 bp):
AAAGTTTAGGGGTCAAAATATAATTTGAGA
Found at i:64087750 original size:59 final size:59
Alignment explanation
Indices: 64087648--64087798 Score: 171
Period size: 59 Copynumber: 2.5 Consensus size: 59
64087638 CAAAATTTTT
* * *
64087648 GGGG-CAAAAGTGTAATTTTATAAAGTTTAGAGGTTAAAATATAATTTGGAGAACA-TTTA
1 GGGGTCAAAA-TGTAATTTAAAAAAGTTTAGGGGTTAAAATATAATTTGGAGAA-AGTTTA
* * *
64087707 GGGGTCAAAATGTAATTTAAAAAAGTTTAGGGGTTGAAGTATAATTTTGAGAAAGTTTA
1 GGGGTCAAAATGTAATTTAAAAAAGTTTAGGGGTTAAAATATAATTTGGAGAAAGTTTA
* * * *
64087766 GGGATCAAAATGAAATTTTAGAAAATTTTAGGG
1 GGGGTCAAAATGTAA-TTTAAAAAAGTTTAGGG
64087799 TCAAAATGCA
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
58 1 0.01
59 58 0.73
60 20 0.25
ACGTcount: A:0.40, C:0.03, G:0.24, T:0.33
Consensus pattern (59 bp):
GGGGTCAAAATGTAATTTAAAAAAGTTTAGGGGTTAAAATATAATTTGGAGAAAGTTTA
Found at i:64092903 original size:24 final size:21
Alignment explanation
Indices: 64092876--64092939 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
64092866 AAAAAATGAG
64092876 TAAATTAATCTTTATATATTATAA
1 TAAATTAATCTTT-T-TATTA-AA
* *
64092900 TAAACTAGTCTTTTTATTAAA
1 TAAATTAATCTTTTTATTAAA
* *
64092921 AAAATTATTCATTTTTATT
1 TAAATTAATC-TTTTTATT
64092940 GTTAAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 9 0.26
22 13 0.38
23 1 0.03
24 11 0.32
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (21 bp):
TAAATTAATCTTTTTATTAAA
Found at i:64092968 original size:20 final size:19
Alignment explanation
Indices: 64092931--64092973 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
64092921 AAAATTATTC
64092931 ATTTTTATTGTTAAAAATT
1 ATTTTTATTGTTAAAAATT
*
64092950 GATTTTTATGTGTT-GAAATT
1 -ATTTTTAT-TGTTAAAAATT
64092970 ATTT
1 ATTT
64092974 GATTATTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (19 bp):
ATTTTTATTGTTAAAAATT
Found at i:64093616 original size:26 final size:26
Alignment explanation
Indices: 64093578--64093627 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
64093568 TTTTAGACCA
**
64093578 AAATTTATTATTTTTATTCATTTGGT
1 AAATTTAGGATTTTTATTCATTTGGT
* *
64093604 AAATTTAGGATTTTTTTTTATTTG
1 AAATTTAGGATTTTTATTCATTTG
64093628 TGAGGAGCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (26 bp):
AAATTTAGGATTTTTATTCATTTGGT
Found at i:64094791 original size:24 final size:24
Alignment explanation
Indices: 64094764--64094809 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
64094754 AATTCAATTG
*
64094764 CTAAATTAAAATTTATCAACTCGA
1 CTAAATCAAAATTTATCAACTCGA
* *
64094788 CTAACTCAAAATTTATTAACTC
1 CTAAATCAAAATTTATCAACTC
64094810 AATTCGACTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (24 bp):
CTAAATCAAAATTTATCAACTCGA
Found at i:64098548 original size:16 final size:16
Alignment explanation
Indices: 64098527--64098569 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
64098517 TGAGTTTAAG
64098527 AGTTTTAAGAGT-ATT
1 AGTTTTAAGAGTAATT
64098542 AAGTTTTAATGAGTAATT
1 -AGTTTTAA-GAGTAATT
*
64098560 AGATTTAAGA
1 AGTTTTAAGA
64098570 TTCAAATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.42
17 11 0.46
18 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (16 bp):
AGTTTTAAGAGTAATT
Found at i:64098555 original size:17 final size:19
Alignment explanation
Indices: 64098513--64098556 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
64098503 ATTTTTAATA
64098513 TTAATGAGT-TTAAGAGTT
1 TTAATGAGTATTAAGAGTT
64098531 TTAA-GAGTATT-A-AGTT
1 TTAATGAGTATTAAGAGTT
64098547 TTAATGAGTA
1 TTAATGAGTA
64098557 ATTAGATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.33
17 10 0.42
18 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.43
Consensus pattern (19 bp):
TTAATGAGTATTAAGAGTT
Found at i:64098711 original size:18 final size:18
Alignment explanation
Indices: 64098690--64098732 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
64098680 AATTGAATAT
*
64098690 AAAAATTGACTAAATCAA
1 AAAAATTGAATAAATCAA
*
64098708 AAAAACTGAATAAATCAA
1 AAAAATTGAATAAATCAA
64098726 AAAAATT
1 AAAAATT
64098733 AAGTAGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.65, C:0.09, G:0.05, T:0.21
Consensus pattern (18 bp):
AAAAATTGAATAAATCAA
Found at i:64100104 original size:12 final size:12
Alignment explanation
Indices: 64100087--64100122 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
64100077 AGCTGGATCA
*
64100087 AAATTTTTTTAT
1 AAATTTTTTAAT
64100099 AAATTTTTTAAT
1 AAATTTTTTAAT
*
64100111 AAATTATTTAAT
1 AAATTTTTTAAT
64100123 TAGTTAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
AAATTTTTTAAT
Found at i:64103541 original size:25 final size:24
Alignment explanation
Indices: 64103503--64103551 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
64103493 TATTCCGTAG
*
64103503 TTTTTATAAAAAATAATTTGATTA
1 TTTTTAAAAAAAATAATTTGATTA
* *
64103527 TTTTTAAAAAGAAATTATTTTATTA
1 TTTTTAAAAA-AAATAATTTGATTA
64103552 ACTCTTTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTTTAAAAAAAATAATTTGATTA
Found at i:64113908 original size:3 final size:3
Alignment explanation
Indices: 64113898--64113928 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
64113888 ATAATAAACC
64113898 AGA A-A AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
64113929 GGATTACCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:64116379 original size:31 final size:31
Alignment explanation
Indices: 64116344--64116448 Score: 183
Period size: 31 Copynumber: 3.4 Consensus size: 31
64116334 TGATCAAATT
64116344 AAAGTATAAGGACTAAACCCATAACTTTTGC
1 AAAGTATAAGGACTAAACCCATAACTTTTGC
64116375 AAAGTATAAGGACTAAACCCATAACTTTTGC
1 AAAGTATAAGGACTAAACCCATAACTTTTGC
*
64116406 AAAGTTTAAGGACTAAACCCATAACTTTTGC
1 AAAGTATAAGGACTAAACCCATAACTTTTGC
* *
64116437 GAAGTACAAGGA
1 AAAGTATAAGGA
64116449 GTAATGGCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (31 bp):
AAAGTATAAGGACTAAACCCATAACTTTTGC
Found at i:64117527 original size:23 final size:25
Alignment explanation
Indices: 64117483--64117528 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
64117473 ATTTAACACG
*
64117483 TTTGAGTCTCCTTTTTTGTTGATAT
1 TTTGAGTCTCCTTTTCTGTTGATAT
*
64117508 TTTGATTCT-CTTTTCT-TTGAT
1 TTTGAGTCTCCTTTTCTGTTGAT
64117529 TTATTTTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 6 0.32
25 8 0.42
ACGTcount: A:0.11, C:0.13, G:0.13, T:0.63
Consensus pattern (25 bp):
TTTGAGTCTCCTTTTCTGTTGATAT
Found at i:64122833 original size:18 final size:19
Alignment explanation
Indices: 64122805--64122845 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
64122795 ATTGTTTGAA
64122805 TATTGTATAATATTTGTT-T
1 TATTGTATAAT-TTTGTTAT
64122824 TATTGT-TAATTTTGTTAT
1 TATTGTATAATTTTGTTAT
64122842 TATT
1 TATT
64122846 TTAGAGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (19 bp):
TATTGTATAATTTTGTTAT
Found at i:64125026 original size:21 final size:21
Alignment explanation
Indices: 64124992--64125035 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
64124982 TATCCAAATT
* *
64124992 AAAATCGAACCAAATTCAATA
1 AAAATCAAACCAAAATCAATA
* *
64125013 AAAATCAAATCAAAATCGATA
1 AAAATCAAACCAAAATCAATA
64125034 AA
1 AA
64125036 TTAAGTTTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.16, G:0.05, T:0.18
Consensus pattern (21 bp):
AAAATCAAACCAAAATCAATA
Found at i:64125816 original size:20 final size:22
Alignment explanation
Indices: 64125774--64125823 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
64125764 TATTGACGTC
64125774 AATAAATAATTTAAAAATCATAAA
1 AATAAATAATTT-AAAA-CATAAA
64125798 AATAAATAATTT-AAA-ATAAA
1 AATAAATAATTTAAAACATAAA
64125818 AATAAA
1 AATAAA
64125824 AATAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.42
22 3 0.12
24 12 0.46
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (22 bp):
AATAAATAATTTAAAACATAAA
Found at i:64125832 original size:20 final size:20
Alignment explanation
Indices: 64125793--64125832 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64125783 TTTAAAAATC
*
64125793 ATAAAAATAAATAATTTAAA
1 ATAAAAATAAATAATATAAA
64125813 ATAAAAATAAA-AATAATAAA
1 ATAAAAATAAATAAT-ATAAA
64125833 TTAACATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
ATAAAAATAAATAATATAAA
Found at i:64128332 original size:29 final size:28
Alignment explanation
Indices: 64128299--64128359 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
64128289 ATTCTTAAAT
*
64128299 GATAGTCACTGCTAGACTCTTGTTTGGCG
1 GATAGTCACTGC-AGACTCTTGTTTGGCA
* * *
64128328 GATAGTTACTGCGGCCTCTTGTTTGGCA
1 GATAGTCACTGCAGACTCTTGTTTGGCA
64128356 GATA
1 GATA
64128360 ATCATTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (28 bp):
GATAGTCACTGCAGACTCTTGTTTGGCA
Found at i:64128684 original size:15 final size:15
Alignment explanation
Indices: 64128664--64128700 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
64128654 ATGGATGTGA
*
64128664 ACTCATATATGGAGG
1 ACTCATATATAGAGG
*
64128679 ACTCATATATAGCGG
1 ACTCATATATAGAGG
64128694 ACTCATA
1 ACTCATA
64128701 CATGTAGATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (15 bp):
ACTCATATATAGAGG
Found at i:64133738 original size:20 final size:21
Alignment explanation
Indices: 64133690--64133741 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
64133680 GGTTTCATGT
64133690 TTCCAA-TTTTATTTTTATTA
1 TTCCAATTTTTATTTTTATTA
*
64133710 TT-C--TATTTATTTTT-TTA
1 TTCCAATTTTTATTTTTATTA
64133727 TTCCAATTTTTATTT
1 TTCCAATTTTTATTT
64133742 GATCCTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 1 0.04
20 10 0.38
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (21 bp):
TTCCAATTTTTATTTTTATTA
Found at i:64140744 original size:28 final size:29
Alignment explanation
Indices: 64140711--64140766 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
64140701 TTCCTTTTTG
* *
64140711 TTTTTTAAT-AATGGCCCAATATTTTTAC
1 TTTTTTAATAAATGACCCAATATGTTTAC
*
64140739 TTTTTTCATAAATGACCCAATATGTTTA
1 TTTTTTAATAAATGACCCAATATGTTTA
64140767 TATTTCTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.48
Consensus pattern (29 bp):
TTTTTTAATAAATGACCCAATATGTTTAC
Found at i:64141422 original size:3 final size:3
Alignment explanation
Indices: 64141408--64141445 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
64141398 CAATTTGAAT
64141408 GAA GAA -AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
64141446 ATGGAGATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:64144789 original size:27 final size:28
Alignment explanation
Indices: 64144759--64144816 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
64144749 TTATCAATCA
64144759 TAATGTTTTGTTTAATTT-T-ATAAATAT
1 TAATGTTTTG-TTAATTTATAATAAATAT
*
64144786 TAATGTTTTGTTAATTTATAATAAATTT
1 TAATGTTTTGTTAATTTATAATAAATAT
64144814 TAA
1 TAA
64144817 ATATTAGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 7 0.25
27 11 0.39
28 10 0.36
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (28 bp):
TAATGTTTTGTTAATTTATAATAAATAT
Found at i:64160036 original size:38 final size:38
Alignment explanation
Indices: 64159986--64160082 Score: 124
Period size: 38 Copynumber: 2.6 Consensus size: 38
64159976 TGTATTTGGC
*
64159986 TCAACAGCAACAGTAGACAT-TCTTATCATGTATTCAAT
1 TCAACAGTAACAGTAGACATGT-TTATCATGTATTCAAT
* ***
64160024 TCAATAGTAACAGTAGACATGTTTATCATGTATTTGGT
1 TCAACAGTAACAGTAGACATGTTTATCATGTATTCAAT
*
64160062 TCAACAGTAACAGTAGGCATG
1 TCAACAGTAACAGTAGACATG
64160083 CATCAGTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 50 0.98
39 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (38 bp):
TCAACAGTAACAGTAGACATGTTTATCATGTATTCAAT
Found at i:64163833 original size:29 final size:27
Alignment explanation
Indices: 64163759--64163837 Score: 88
Period size: 28 Copynumber: 2.9 Consensus size: 27
64163749 ATTTTCCAGT
*
64163759 TTTTAAGGGGCCCAAAAAAATTTTAAAC
1 TTTTAAGGGGCCC-AAAAATTTTTAAAC
* *
64163787 TTTTAA-AGGCCAAAAAATTTTTACCAAC
1 TTTTAAGGGGCCCAAAAATTTTTA--AAC
*
64163815 TTTTAAGGGGCCCCAAAATTTTT
1 TTTTAAGGGGCCCAAAAATTTTT
64163838 TTTTTTAGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
26 10 0.24
27 4 0.10
28 15 0.36
29 13 0.31
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (27 bp):
TTTTAAGGGGCCCAAAAATTTTTAAAC
Found at i:64163878 original size:29 final size:31
Alignment explanation
Indices: 64163804--64163915 Score: 95
Period size: 32 Copynumber: 3.6 Consensus size: 31
64163794 GGCCAAAAAA
*
64163804 TTTTTACCAACTTTTAAGGGGCCCCAAAATTT
1 TTTTTACCAACTTTTAA-GGGCCCCAAAAGTT
*** *
64163836 TTTTTTTTAGCTTTTAAGGG-CCC-AAAGTT
1 TTTTTACCAACTTTTAAGGGCCCCAAAAGTT
** *
64163865 TTTTTACCAACTTTTAAGGGACCTAAAAAGAAT
1 TTTTTACCAACTTTTAAGGG-CCCCAAAAG-TT
*
64163898 TTTCT-CCAACTTTTAAGG
1 TTTTTACCAACTTTTAAGG
64163916 AATCTAAAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
29 21 0.33
30 3 0.05
31 4 0.06
32 30 0.48
33 5 0.08
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (31 bp):
TTTTTACCAACTTTTAAGGGCCCCAAAAGTT
Found at i:64169646 original size:28 final size:28
Alignment explanation
Indices: 64169582--64169652 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
64169572 CACAAGATAA
* *
64169582 TCCTATATAGATAGTTACTGGCCGATTC
1 TCCTATATAGATAGTTACTGGCAGAATC
* **
64169610 TTCGGTATAGATAGTTACTGGCAGAATC
1 TCCTATATAGATAGTTACTGGCAGAATC
64169638 TCCTATATAGATAGT
1 TCCTATATAGATAGT
64169653 CTCTTTTGTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (28 bp):
TCCTATATAGATAGTTACTGGCAGAATC
Found at i:64173965 original size:19 final size:21
Alignment explanation
Indices: 64173923--64173965 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
64173913 AGAGTTATAG
*
64173923 AAAATAAAAATAATTAAAGGA
1 AAAATAAAAATAATTAAAAGA
*
64173944 AAAAT-AAAA-AATTAAAATA
1 AAAATAAAAATAATTAAAAGA
64173963 AAA
1 AAA
64173966 TACCAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 4 0.20
21 5 0.25
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (21 bp):
AAAATAAAAATAATTAAAAGA
Found at i:64174019 original size:22 final size:22
Alignment explanation
Indices: 64173982--64174028 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 22
64173972 AAGTTTGTAT
64173982 CAATCTATATGAAA-TTG-ATC
1 CAATCTATATGAAATTTGAATC
64174002 CAATCTAGTATTGAAATTTGAATC
1 CAATCTA-TA-TGAAATTTGAATC
64174026 CAA
1 CAA
64174029 CCACAGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.30
21 2 0.09
22 5 0.22
23 3 0.13
24 6 0.26
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (22 bp):
CAATCTATATGAAATTTGAATC
Found at i:64176673 original size:101 final size:101
Alignment explanation
Indices: 64176545--64176744 Score: 301
Period size: 101 Copynumber: 2.0 Consensus size: 101
64176535 CCATAGTCTT
* * * *
64176545 ACGTGCATAGTGTCATAACTCAGTTATGGTCGTATCATCAAAATGCCATAGCCCAGCTATGGTCA
1 ACGTCCATAGTGCCATAACCCAGTTATGGTCGTATCATCAAAATGCCACAGCCCAGCTATGGTCA
* *
64176610 TACATATAAACACTGTCATAGTCCAACCATGGTCAG
66 TACATATAAACACTGCCAAAGTCCAACCATGGTCAG
* * * *
64176646 ACGTCCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCACAGCCCAGCTTTGGTCT
1 ACGTCCATAGTGCCATAACCCAGTTATGGTCGTATCATCAAAATGCCACAGCCCAGCTATGGTCA
*
64176711 TACATATATACACTGCCAAAGTCCAACCATGGTC
66 TACATATAAACACTGCCAAAGTCCAACCATGGTC
64176745 TTAAATACTT
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 88 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (101 bp):
ACGTCCATAGTGCCATAACCCAGTTATGGTCGTATCATCAAAATGCCACAGCCCAGCTATGGTCA
TACATATAAACACTGCCAAAGTCCAACCATGGTCAG
Found at i:64180758 original size:27 final size:26
Alignment explanation
Indices: 64180712--64180765 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
64180702 TTGTTAAAGG
* *
64180712 TGATTTTTTTAGTTTCTTTCTTTTTC
1 TGATTTTGTTAGTTTCTTTCATTTTC
*
64180738 TGATTTTGTTATTATTCTTTCATTTTC
1 TGATTTTGTTAGT-TTCTTTCATTTTC
64180765 T
1 T
64180766 TCTTGCGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.70
Consensus pattern (26 bp):
TGATTTTGTTAGTTTCTTTCATTTTC
Found at i:64181640 original size:25 final size:22
Alignment explanation
Indices: 64181586--64181640 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
64181576 TATTATTTTA
* *
64181586 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
*
64181608 TGTGTATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
64181632 TCGTATATA
1 T-GTATATA
64181641 GCTTGACTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:64184902 original size:17 final size:18
Alignment explanation
Indices: 64184880--64184917 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
64184870 CCTCAAAAAA
*
64184880 AAACGGT-TGTTTTTAAT
1 AAACGGTCTGATTTTAAT
*
64184897 AAACGGTCTGATTTTATT
1 AAACGGTCTGATTTTAAT
64184915 AAA
1 AAA
64184918 ACAACAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.34, C:0.08, G:0.16, T:0.42
Consensus pattern (18 bp):
AAACGGTCTGATTTTAAT
Found at i:64191914 original size:28 final size:29
Alignment explanation
Indices: 64191849--64191919 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
64191839 CACAAGATAA
*
64191849 TCCTATATAGATAGTTACTGGCCGATTCT
1 TCCTATATAGATAGTTACTGGCCGAATCT
** *
64191878 TCGGA-ATAGATAGTTACTGGCGGAATC-
1 TCCTATATAGATAGTTACTGGCCGAATCT
64191905 TCCTATATAGATAGT
1 TCCTATATAGATAGT
64191920 CTCTTTTGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 3 0.09
28 29 0.83
29 3 0.09
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (29 bp):
TCCTATATAGATAGTTACTGGCCGAATCT
Found at i:64195947 original size:19 final size:19
Alignment explanation
Indices: 64195923--64195969 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
64195913 ATAGAGTTAT
64195923 AGAAAATAAAAATAATT-AA
1 AGAAAATAAAAA-AATTGAA
64195942 AGAAAAATAAAAAAATTGAA
1 AG-AAAATAAAAAAATTGAA
*
64195962 ATAAAATA
1 AGAAAATA
64195970 TCAAAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (19 bp):
AGAAAATAAAAAAATTGAA
Found at i:64200415 original size:28 final size:28
Alignment explanation
Indices: 64200351--64200421 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
64200341 CACAAGATAA
* *
64200351 TCCTATATAGATAGTTTCTGGCCGGTTC
1 TCCTATATAGATAGTTACTGGCCGGATC
* **
64200379 TTCGGTATAGATAGTTACTGG-CGGAATC
1 TCCTATATAGATAGTTACTGGCCGG-ATC
64200407 TCCTATATAGATAGT
1 TCCTATATAGATAGT
64200422 CTATTTTGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.37
Consensus pattern (28 bp):
TCCTATATAGATAGTTACTGGCCGGATC
Found at i:64203475 original size:12 final size:12
Alignment explanation
Indices: 64203458--64203484 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64203448 TGTCTGAAAC
64203458 TGCCTTTTATGA
1 TGCCTTTTATGA
64203470 TGCCTTTTATGA
1 TGCCTTTTATGA
64203482 TGC
1 TGC
64203485 ACTTGTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.48
Consensus pattern (12 bp):
TGCCTTTTATGA
Found at i:64209651 original size:20 final size:20
Alignment explanation
Indices: 64209628--64209674 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
64209618 GATAACTAAC
* *
64209628 ATTTTTTTATTTATGGTAAT
1 ATTTTTTTATTAATAGTAAT
* *
64209648 ATTTTTATATTAATAGTAGT
1 ATTTTTTTATTAATAGTAAT
64209668 ATTTTTT
1 ATTTTTT
64209675 AATAATTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (20 bp):
ATTTTTTTATTAATAGTAAT
Found at i:64212010 original size:11 final size:11
Alignment explanation
Indices: 64211996--64212055 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
64211986 TTTCTAATTA
64211996 TTTAATAATAT
1 TTTAATAATAT
64212007 TTTAATAATAT
1 TTTAATAATAT
*
64212018 TTT-CT-ATAT
1 TTTAATAATAT
*
64212027 CATTAATACATAAT
1 -TTTAATA-AT-AT
*
64212041 TTTAATAATTT
1 TTTAATAATAT
64212052 TTTA
1 TTTA
64212056 CTTTAAACTT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
9 4 0.10
10 3 0.08
11 20 0.51
12 2 0.05
13 8 0.21
14 2 0.05
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTAATAATAT
Found at i:64213546 original size:22 final size:22
Alignment explanation
Indices: 64213521--64213566 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
64213511 TTCAAGTTCA
64213521 AATCATAATTAGCAGGTCTACT
1 AATCATAATTAGCAGGTCTACT
64213543 AATCATAATTAGCAGGTCTACT
1 AATCATAATTAGCAGGTCTACT
64213565 AA
1 AA
64213567 CACTTACTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (22 bp):
AATCATAATTAGCAGGTCTACT
Found at i:64213777 original size:60 final size:63
Alignment explanation
Indices: 64213713--64213838 Score: 150
Period size: 70 Copynumber: 1.9 Consensus size: 63
64213703 CTCAATTATC
* *
64213713 CCATAGAG-AT-A-GATAGAAAATACATAAATTATCTTAAGTGCAAGTAACACTTTTCTTCTT
1 CCATAGAGAATAAGGATAGAAAATACATAAATTATCTCAAGTGCAAGTAACACATTTCTTCTT
64213773 CCATAGAGATAAATCACAAAGGATAGAAAATACATAAATTATCTCAAGTGCAAGTAACACATTTC
1 CCATAGAG---AAT----AAGGATAGAAAATACATAAATTATCTCAAGTGCAAGTAACACATTTC
64213838 T
59 T
64213839 CCTGAATCCC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
60 8 0.15
64 2 0.04
69 1 0.02
70 43 0.80
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.29
Consensus pattern (63 bp):
CCATAGAGAATAAGGATAGAAAATACATAAATTATCTCAAGTGCAAGTAACACATTTCTTCTT
Found at i:64225834 original size:28 final size:27
Alignment explanation
Indices: 64225789--64225841 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
64225779 TCAACAAAGA
*
64225789 TTTATTTTTTTAGAAAAATTAATATTTT
1 TTTATTATTTTAGAAAAATT-ATATTTT
64225817 TTTATTATTTT-GATAAAATTATATT
1 TTTATTATTTTAGA-AAAATTATATT
64225842 AAATATCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (27 bp):
TTTATTATTTTAGAAAAATTATATTTT
Found at i:64228726 original size:20 final size:20
Alignment explanation
Indices: 64228709--64228752 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
64228699 CTGGTCTTCT
64228709 TCAACCTCTTAAGCTCTTAA
1 TCAACCTCTTAAGCTCTTAA
64228729 TCAACCTCTTAAGCTCTT-A
1 TCAACCTCTTAAGCTCTTAA
64228748 TCAAC
1 TCAAC
64228753 ATTACTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.30, C:0.32, G:0.05, T:0.34
Consensus pattern (20 bp):
TCAACCTCTTAAGCTCTTAA
Found at i:64237751 original size:16 final size:16
Alignment explanation
Indices: 64237732--64237762 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64237722 GTTTAAACTT
64237732 ATGTTCTTTTACATTC
1 ATGTTCTTTTACATTC
*
64237748 ATGTTCTTTTGCATT
1 ATGTTCTTTTACATT
64237763 GATAACAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.10, T:0.58
Consensus pattern (16 bp):
ATGTTCTTTTACATTC
Found at i:64239930 original size:31 final size:31
Alignment explanation
Indices: 64239851--64239932 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
64239841 AAAAGATTAT
* * *
64239851 ATACCAACTTAATAAAAAGTGTCAAGTTTAG
1 ATACCAAATTAAAAAAAAGTGTCAAATTTAG
* *
64239882 ATACCAAATTAGAAAAAAGTGTCAAATTTGG
1 ATACCAAATTAAAAAAAAGTGTCAAATTTAG
*
64239913 ATACGAAATTAAAAAAAAGT
1 ATACCAAATTAAAAAAAAGT
64239933 TTAGGTACCA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.51, C:0.10, G:0.13, T:0.26
Consensus pattern (31 bp):
ATACCAAATTAAAAAAAAGTGTCAAATTTAG
Found at i:64240370 original size:6 final size:6
Alignment explanation
Indices: 64240359--64240385 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
64240349 TGAGAGAAGA
64240359 GATAGG GATAGG GATAGG GATAGG GAT
1 GATAGG GATAGG GATAGG GATAGG GAT
64240386 CGTGAACGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.48, T:0.19
Consensus pattern (6 bp):
GATAGG
Found at i:64240543 original size:6 final size:6
Alignment explanation
Indices: 64240532--64240620 Score: 97
Period size: 6 Copynumber: 13.8 Consensus size: 6
64240522 CTAGGGAGAA
*
64240532 GGAAAG GGAAAG GGAAAAG CGTGAAAG GGAAAG GGAAAG GGAAAG AGAAAGG
1 GGAAAG GGAAAG GG-AAAG -G-GAAAG GGAAAG GGAAAG GGAAAG GGAAA-G
* *
64240584 GAGAAGAG GGAAAG AGAAAG AGAAAG GGAAAG GGAAA
1 G-GAA-AG GGAAAG GGAAAG GGAAAG GGAAAG GGAAA
64240621 AAGAGAGGGA
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
6 52 0.71
7 9 0.12
8 10 0.14
9 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.45, T:0.01
Consensus pattern (6 bp):
GGAAAG
Found at i:64240567 original size:39 final size:39
Alignment explanation
Indices: 64240510--64240620 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 39
64240500 AAGGAAAAGG
**
64240510 AGAGGGAAAGAGCTAGGGAGAA-GGAAAGGGAAAGGGAAA
1 AGAGGGAAAGAGAAAGGGA-AAGGGAAAGGGAAAGGGAAA
* * * * *
64240549 AGCGTGAAAGGGAAAGGGAAAGGGAAAGAGAAAGGGAGA
1 AGAGGGAAAGAGAAAGGGAAAGGGAAAGGGAAAGGGAAA
*
64240588 AGAGGGAAAGAGAAAGAGAAAGGGAAAGGGAAA
1 AGAGGGAAAGAGAAAGGGAAAGGGAAAGGGAAA
64240621 AAGAGAGGGA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 2 0.03
39 57 0.97
ACGTcount: A:0.51, C:0.02, G:0.45, T:0.02
Consensus pattern (39 bp):
AGAGGGAAAGAGAAAGGGAAAGGGAAAGGGAAAGGGAAA
Found at i:64240569 original size:33 final size:34
Alignment explanation
Indices: 64240524--64240614 Score: 107
Period size: 33 Copynumber: 2.7 Consensus size: 34
64240514 GGAAAGAGCT
*
64240524 AGGGAGAA-GGAAAGGGAAAGGGAAAAGCGTGAA-
1 AGGGA-AAGGGAAAGGGAAAGGGAAAAGCGAGAAG
* *
64240557 AGGGAAAGGGAAAGGGAAAGAG-AAAGGGAGAAG
1 AGGGAAAGGGAAAGGGAAAGGGAAAAGCGAGAAG
* *
64240590 AGGGAAAGAGAAAGAGAAAGGGAAA
1 AGGGAAAGGGAAAGGGAAAGGGAAA
64240615 GGGAAAAAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
32 10 0.20
33 37 0.76
34 2 0.04
ACGTcount: A:0.53, C:0.01, G:0.45, T:0.01
Consensus pattern (34 bp):
AGGGAAAGGGAAAGGGAAAGGGAAAAGCGAGAAG
Found at i:64240593 original size:27 final size:27
Alignment explanation
Indices: 64240512--64240612 Score: 91
Period size: 27 Copynumber: 3.6 Consensus size: 27
64240502 GGAAAAGGAG
**
64240512 AGGGAAAGAGCTAGGGAGAAGGAAAGGGAA
1 AGGGAAAGAGAAAGGGAGAA-G--AGGGAA
*
64240542 AGGGAAAAGCGTGAAA-GG-GAA-AGGGAA
1 AGGG-AAA--GAGAAAGGGAGAAGAGGGAA
64240569 AGGGAAAGAGAAAGGGAGAAGAGGGAA
1 AGGGAAAGAGAAAGGGAGAAGAGGGAA
*
64240596 AGAGAAAGAGAAAGGGA
1 AGGGAAAGAGAAAGGGA
64240613 AAGGGAAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
24 5 0.08
25 2 0.03
26 6 0.10
27 32 0.53
30 4 0.07
31 6 0.10
32 2 0.03
33 3 0.05
ACGTcount: A:0.50, C:0.02, G:0.46, T:0.02
Consensus pattern (27 bp):
AGGGAAAGAGAAAGGGAGAAGAGGGAA
Found at i:64252185 original size:7 final size:7
Alignment explanation
Indices: 64252173--64252205 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
64252163 AAAGTATTTT
64252173 AAAATTA
1 AAAATTA
64252180 AAAATTA
1 AAAATTA
64252187 AAAATTA
1 AAAATTA
64252194 AAAATTA
1 AAAATTA
64252201 AAAAT
1 AAAAT
64252206 ATATATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAATTA
Found at i:64253696 original size:37 final size:37
Alignment explanation
Indices: 64253645--64253750 Score: 98
Period size: 37 Copynumber: 2.9 Consensus size: 37
64253635 AAGCTTTTGA
64253645 TATATT-TATATATTTATCAAAATTATATTAAT-TTT
1 TATATTATATATATTTATCAAAATTATATTAATATTT
*
64253680 TATATTATATTATATTTTATCACAAA-TA-A-AAATATTT
1 TATATTATA-TATA-TTTATCA-AAATTATATTAATATTT
* * *
64253717 TATATTAAAAAATATTTAT-AAAATTATTTTAATA
1 TATATT-ATATATATTTATCAAAATTATATTAATA
64253751 AATGATTATT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
34 3 0.05
35 9 0.16
36 10 0.18
37 21 0.37
38 11 0.19
39 3 0.05
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (37 bp):
TATATTATATATATTTATCAAAATTATATTAATATTT
Found at i:64261165 original size:21 final size:21
Alignment explanation
Indices: 64261139--64261185 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
64261129 ATGGAGGCGA
*
64261139 TCTCCATGTAGATCA-TCAAGG
1 TCTCCAGGTAGAT-ATTCAAGG
64261160 TCTCCAGGTAGATATTCAAGG
1 TCTCCAGGTAGATATTCAAGG
64261181 TCTCC
1 TCTCC
64261186 TTCTGGGTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (21 bp):
TCTCCAGGTAGATATTCAAGG
Found at i:64263080 original size:22 final size:22
Alignment explanation
Indices: 64263052--64263094 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
64263042 AGTTAAAATT
*
64263052 AAATACGTTATATTTATTTATC
1 AAATACGCTATATTTATTTATC
*
64263074 AAATACGCTATATTTTTTTAT
1 AAATACGCTATATTTATTTAT
64263095 ATGTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (22 bp):
AAATACGCTATATTTATTTATC
Found at i:64272370 original size:101 final size:101
Alignment explanation
Indices: 64272192--64272402 Score: 287
Period size: 101 Copynumber: 2.1 Consensus size: 101
64272182 TTGAAGTATT
* ** * * *
64272192 TAAGACCATGGTTGGACCATGGTAGTGTATATATGTAAGACCATAGTTGGGCTATGGCATTCTGA
1 TAAGACCATAGTTGGACCATGACAGTATATATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
* * ** *
64272257 TGATAAGGCCATAACTCGGTTATGGCACTATGGACG
66 TGACAAGACCATAACTAAGTTATGACACTATGGACG
* * *
64272293 TATGACCATAGTTGGACCATGACAGTATTTATATGTAAGACCATAGCTGGGTTATGGCATTCTAA
1 TAAGACCATAGTTGGACCATGACAGTATATATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
*
64272358 TGACAAGACCATAACTAAGTTATGACACTATGTACG
66 TGACAAGACCATAACTAAGTTATGACACTATGGACG
64272394 TAAGACCAT
1 TAAGACCAT
64272403 GGCAGGGCTG
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 94 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (101 bp):
TAAGACCATAGTTGGACCATGACAGTATATATATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TGACAAGACCATAACTAAGTTATGACACTATGGACG
Found at i:64274140 original size:51 final size:50
Alignment explanation
Indices: 64274085--64274382 Score: 258
Period size: 51 Copynumber: 5.9 Consensus size: 50
64274075 GTGAAAGTGT
* *
64274085 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACATGAATCGATAAATAA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAT-A
* * * * ** * * * * *
64274136 TGGTCACATGCGTAGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAA-ATA
* * *
64274187 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGG
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAT-A
* * * * * * * *
64274238 TGGTCACATGTGTAGTACTAAGTGAAGCCTACTATGTGTACCGAAAAACTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAA-TA
* * * *
64274289 TAGTCACGTATGTAGTACTATGTGAAGGCTATTACGTGAAAT-G-TAAAAA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AATCGATAAATA
* *
64274338 TTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 -TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
64274383 ATGATAATAG
Statistics
Matches: 189, Mismatches: 51, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
49 2 0.01
50 39 0.21
51 145 0.77
52 3 0.02
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (50 bp):
TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA
Found at i:64274243 original size:102 final size:100
Alignment explanation
Indices: 64274084--64274370 Score: 376
Period size: 102 Copynumber: 2.8 Consensus size: 100
64274074 AGTGAAAGTG
* * *
64274084 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACATGAATCGATAAATAATGGTCACATGCGT
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAAT--TGGTCACATGTGT
* *
64274149 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
64 AGTACTAAGTGAAGGCTACAATATGTACCGAAAAACT
64274186 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGGTGGTCACATGTGT
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAAT--TGGTCACATGTGT
* * *
64274251 AGTACTAAGTGAAGCCTACTATGTGTACCGAAAAACT
64 AGTACTAAGTGAAGGCTACAATATGTACCGAAAAACT
* * * * * * * *
64274288 TTAGTCACGTATGTAGTACTATGTGAAGGCTATTACGTGAAATGTAAAAATTGATCACGTGTGTA
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTG-ATAAATTGGTCACATGTGTA
*
64274353 GTACTATGTGAAGGCTAC
65 GTACTAAGTGAAGGCTAC
64274371 TACGTGTATC
Statistics
Matches: 164, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
101 28 0.17
102 131 0.80
103 5 0.03
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (100 bp):
TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATTGGTCACATGTGTAG
TACTAAGTGAAGGCTACAATATGTACCGAAAAACT
Found at i:64278987 original size:18 final size:17
Alignment explanation
Indices: 64278966--64279001 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
64278956 TTTCAATTGG
*
64278966 AAAAAATGAAAGAGAAA
1 AAAAAATGAAAAAGAAA
64278983 AAAAAA-GAAAAAGAAA
1 AAAAAATGAAAAAGAAA
64278999 AAA
1 AAA
64279002 TAAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (17 bp):
AAAAAATGAAAAAGAAA
Found at i:64289312 original size:16 final size:15
Alignment explanation
Indices: 64289291--64289324 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
64289281 ACTTGAACTG
*
64289291 ATTTGAATTTAAAATA
1 ATTTGAACTTAAAA-A
64289307 ATTTGAACTTAAAAA
1 ATTTGAACTTAAAAA
64289322 ATT
1 ATT
64289325 CGAGGGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (15 bp):
ATTTGAACTTAAAAA
Found at i:64294531 original size:101 final size:102
Alignment explanation
Indices: 64294352--64294565 Score: 308
Period size: 101 Copynumber: 2.1 Consensus size: 102
64294342 CTGAAGTATT
* * * *
64294352 TAAGACCATGGTTGGACCATGGCAGTAGACATATGTTAAGACTATAGCTGGGTTGTGGCATTCTG
1 TAAGACCATGGTTGGACCATGACAGTAGACATATGTTAAGACCATAGCTGGGCTATGGCATTCTG
*
64294417 ATGATAAGACCATAACTG-GTTTATGACACTATGGACG
66 ATGATAAGACCATAACTGAG-TTATGACACTATGCACG
* ** *
64294454 TATGACCATGGTTGGACCATGACAGT-GTTTATATG-TAAGACCATAGCTGGGCTATGGTATTCT
1 TAAGACCATGGTTGGACCATGACAGTAG-ACATATGTTAAGACCATAGCTGGGCTATGGCATTCT
64294517 GATGATAAGACCATAACTGAGTTATGACACTATGCACG
65 GATGATAAGACCATAACTGAGTTATGACACTATGCACG
64294555 TAAGACCATGG
1 TAAGACCATGG
64294566 CAGGACTGTG
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
101 70 0.70
102 30 0.30
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (102 bp):
TAAGACCATGGTTGGACCATGACAGTAGACATATGTTAAGACCATAGCTGGGCTATGGCATTCTG
ATGATAAGACCATAACTGAGTTATGACACTATGCACG
Found at i:64294588 original size:101 final size:101
Alignment explanation
Indices: 64294382--64294598 Score: 269
Period size: 101 Copynumber: 2.2 Consensus size: 101
64294372 GGCAGTAGAC
* * *
64294382 ATATGTTAAGACTATAGCTGGGTTGTGGCATTCTGATGATAAGACCATAACTGGTTTATGACACT
1 ATATG-TAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTGGTTTATGACACT
* * ** * **
64294447 ATGGACGTATGACCATGGTTGGACCATGACAGTGTTT
65 ATGCACGTAAGACCATGGCAGGACCATGACAATGCAT
*
64294484 ATATGTAAGACCATAGCTGGGCTATGGTATTCTGATGATAAGACCATAACTGAG-TTATGACACT
1 ATATGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTG-GTTTATGACACT
** *
64294548 ATGCACGTAAGACCATGGCAGGACTGTGGCAATGCAT
65 ATGCACGTAAGACCATGGCAGGACCATGACAATGCAT
64294585 ATA--TAAGACCATAG
1 ATATGTAAGACCATAG
64294599 TTGGATTATG
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 11 0.11
101 83 0.83
102 6 0.06
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (101 bp):
ATATGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTGGTTTATGACACTA
TGCACGTAAGACCATGGCAGGACCATGACAATGCAT
Found at i:64301505 original size:27 final size:27
Alignment explanation
Indices: 64301475--64301549 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
64301465 GCGAGTAGTT
64301475 GCGCCTATCTCGA-AGGCGCCAATGGTA
1 GCGCCTATCT-GACAGGCGCCAATGGTA
* *
64301502 GCGCTTATCTGACAGACGCCAATGGTA
1 GCGCCTATCTGACAGGCGCCAATGGTA
* *
64301529 GAGCCTATCTGATAGGCGCCA
1 GCGCCTATCTGACAGGCGCCA
64301550 CTGCTTCTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (27 bp):
GCGCCTATCTGACAGGCGCCAATGGTA
Found at i:64301669 original size:27 final size:26
Alignment explanation
Indices: 64301609--64301670 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 26
64301599 CTGTATATAT
64301609 ATTTAAATATTTTAATAAAAATAAAAA
1 ATTT-AATATTTTAATAAAAATAAAAA
* *
64301636 A-TCAATATTTTATTTAAACAA-AAAAA
1 ATTTAATATTTTA-ATAAA-AATAAAAA
64301662 ATTTAATAT
1 ATTTAATAT
64301671 AAAAAATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 9 0.31
26 11 0.38
27 9 0.31
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (26 bp):
ATTTAATATTTTAATAAAAATAAAAA
Found at i:64301733 original size:54 final size:54
Alignment explanation
Indices: 64301655--64301806 Score: 204
Period size: 52 Copynumber: 2.9 Consensus size: 54
64301645 TTATTTAAAC
* * *
64301655 AAAAAA-AA-TTTAATATAAAAAATTGATTCGTGCCTGTGAGATAGGTGCGATT
1 AAAAAATAATTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCGCGATT
64301707 AAAAAATAATTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCGCGATT
1 AAAAAATAATTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCGCGATT
** * * *
64301761 --AAAATTTTTTTAATATAAAAAATTGATTGGCACCTGTAAGATAGGC
1 AAAAAATAATTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGC
64301807 ACGGTTATAA
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 47 0.52
53 2 0.02
54 41 0.46
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (54 bp):
AAAAAATAATTTTAATATAAAAAATTGATTCGCGCCTGTCAGATAGGCGCGATT
Found at i:64310645 original size:8 final size:7
Alignment explanation
Indices: 64310617--64310643 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
64310607 AAAAAGGCAG
64310617 AAAAAAT
1 AAAAAAT
64310624 AAAAAAT
1 AAAAAAT
64310631 AAAAAAT
1 AAAAAAT
64310638 AAAAAA
1 AAAAAA
64310644 ATGGAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:64319046 original size:25 final size:23
Alignment explanation
Indices: 64319018--64319075 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
64319008 TTTTAAAGTT
* *
64319018 AAATACTAATGGACAATAAATAATA
1 AAATACTAATAGAAAAT-AA-AATA
*
64319043 AAATAATAATAGAAAATAAAATA
1 AAATACTAATAGAAAATAAAATA
*
64319066 AAAAACTAAT
1 AAATACTAAT
64319076 CTTCATCTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 12 0.43
24 2 0.07
25 14 0.50
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (23 bp):
AAATACTAATAGAAAATAAAATA
Found at i:64319528 original size:20 final size:18
Alignment explanation
Indices: 64319503--64319541 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
64319493 CAATTAATTA
64319503 ATTTTTAGAATATTTTATAT
1 ATTTTTA-AATATTTT-TAT
64319523 ATTTTTAAATATTTTTAT
1 ATTTTTAAATATTTTTAT
64319541 A
1 A
64319542 AAATTTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 8 0.42
20 7 0.37
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTTTAAATATTTTTAT
Found at i:64319548 original size:20 final size:20
Alignment explanation
Indices: 64319505--64319548 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
64319495 ATTAATTAAT
* *
64319505 TTTTAGAATATTTTATATAT
1 TTTTAGAATATTTTATAAAA
64319525 TTTTA-AATATTTTTATAAAA
1 TTTTAGAATA-TTTTATAAAA
64319545 TTTT
1 TTTT
64319549 CAAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTAGAATATTTTATAAAA
Found at i:64323581 original size:41 final size:41
Alignment explanation
Indices: 64323469--64323816 Score: 265
Period size: 43 Copynumber: 8.2 Consensus size: 41
64323459 CTAACTTTTT
* *
64323469 GCGGCGCTTACAGAAAAAACGCCGCTAAAGGTCATGTTCTTTA
1 GCGGCGCTT--AGAAAAAACGCCACTAAAGATCATGTTCTTTA
* *
64323512 TCGGTGCTTAGAAAAAATCGCCACTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAA-CGCCACTAAAGATCATGTTCTTTA
* * * *
64323554 GCGGCGCTTAGAAAAAAAGTCAATAAAGATCATGATCTTTA
1 GCGGCGCTTAGAAAAAACGCCACTAAAGATCATGTTCTTTA
* * * *
64323595 GCGGCGCTTGTGCAAAAAACGCCGCTAAAGACCATGATCTTTA
1 GCGGCGCTT-AG-AAAAAACGCCACTAAAGATCATGTTCTTTA
* * * *
64323638 GTGGCGCTTATAGAAAACGCCACTAAAGATCATCTTCTTTA
1 GCGGCGCTTAGAAAAAACGCCACTAAAGATCATGTTCTTTA
* * * *
64323679 ACGGCGCTTGTGCAAAAAACGCCACTAAA-TTACATGATCTTTA
1 GCGGCGCTT-AG-AAAAAACGCCACTAAAGAT-CATGTTCTTTA
* ** * **
64323722 GCGGCGCTTGGGAATAAAACGCTGCTAAA-AGTAAAATTCTTTA
1 GCGGCGCTT-AGAA-AAAACGCCACTAAAGA-TCATGTTCTTTA
** *
64323765 GCGGCGCTTTATCTACAAACGCCACTAAA-AGT-A-GTTGCTTTA
1 GCGGCGC-TTA-GAAAAAACGCCACTAAAGA-TCATGTT-CTTTA
64323807 GCGGCGCTTA
1 GCGGCGCTTA
64323817 TTTCAGAAAC
Statistics
Matches: 246, Mismatches: 48, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
41 74 0.30
42 54 0.22
43 114 0.46
44 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (41 bp):
GCGGCGCTTAGAAAAAACGCCACTAAAGATCATGTTCTTTA
Done.