Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 22 of 228
Found at i:7241999 original size:43 final size:43
Alignment explanation
Indices: 7241891--7242007 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
7241881 TGTTGGTCTA
* * *
7241891 TAGCGACGCTTTTCCCACAAACGCCGCAAAAGACCCTGATCTC
1 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCCTGATATC
* * *
7241934 TAGCGGCGCTTTCCCCACAAACGCCGCTAAAGACCCTTATATT
1 TAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCCTGATATC
* * *
7241977 TAGCGGCGCTTTTACCAAAAACGCCACTAAA
1 TAGCGGCGCTTTTCCCACAAACGCCGCTAAA
7242008 TTTGGCAGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.21
Consensus pattern (43 bp):
TAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCCTGATATC
Found at i:7242344 original size:21 final size:21
Alignment explanation
Indices: 7242315--7242427 Score: 109
Period size: 21 Copynumber: 5.4 Consensus size: 21
7242305 TTTGACGCTG
*
7242315 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
* **
7242336 CTCTACTTCTCTCGCTATAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * *
7242357 CTCTGCTTCCCTCGTTGTAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * *
7242378 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCTCTCGCTGCAGC
* *
7242399 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCTCTCGCTGCAGC
*
7242420 ATCTGCTT
1 CTCTGCTT
7242428 TAAGCTGCTG
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 74 1.00
ACGTcount: A:0.06, C:0.41, G:0.17, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCAGC
Found at i:7242362 original size:42 final size:42
Alignment explanation
Indices: 7242315--7242416 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
7242305 TTTGACGCTG
*
7242315 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCTCTCGCTATAGC
1 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCTCTCGCTACAGC
* * * * *
7242357 CTCTGCTTCCCTCGTTGTAGCCTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGCCTCTACTTCTCTCGCTACAGC
* *
7242399 CTCTGCTTCTCTTGCTGC
1 CTCTGCTTCCCTCGCTGC
7242417 CGCATCTGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.06, C:0.41, G:0.17, T:0.36
Consensus pattern (42 bp):
CTCTGCTTCCCTCGCTGCAGCCTCTACTTCTCTCGCTACAGC
Found at i:7242564 original size:66 final size:65
Alignment explanation
Indices: 7242418--7242568 Score: 214
Period size: 66 Copynumber: 2.3 Consensus size: 65
7242408 TCTTGCTGCC
* *
7242418 GCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGATTCTCTCGCTGC
1 GCATCTGCTTTAAGTTG-TGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGATTCTCTCGATGC
7242483 T
65 T
* *
7242484 GCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATG
1 GCATCTGCTTTAAGTTGT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGATTCTCTCGATG
*
7242548 TT
64 CT
*
7242550 GCCTCTGCTTTAAGTTGTG
1 GCATCTGCTTTAAGTTGTG
7242569 TAATTTGCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
65 2 0.03
66 71 0.92
67 4 0.05
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (65 bp):
GCATCTGCTTTAAGTTGTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGATTCTCTCGATGCT
Found at i:7243514 original size:351 final size:351
Alignment explanation
Indices: 7242871--7243529 Score: 1309
Period size: 351 Copynumber: 1.9 Consensus size: 351
7242861 TAAAAAACCC
7242871 AATGCAACATAACTTAAAAATATTTGCATTACAATAAATGAAATAAATCATTAGAAAATAAACAC
1 AATGCAACATAACTTAAAAATATTTGCATTACAATAAATGAAATAAATCATTAGAAAATAAACAC
*
7242936 TATAAATAATTAAAACAAGTGAAATTGTATTAAGCAAACGTGCCATAATTTCTGCAGCTTCAGGA
66 TATAAATAATTAAAACAAGTGAAATTGTATTAAGCAAACGTACCATAATTTCTGCAGCTTCAGGA
7243001 GTCATAGGGTTTCCATCTTTCTTCCTATGTGTAATGTCAAAAAGTTGAAGGCGTCCAACTTTTTG
131 GTCATAGGGTTTCCATCTTTCTTCCTATGTGTAATGTCAAAAAGTTGAAGGCGTCCAACTTTTTG
7243066 ACCGGACGACAGTTCCTACAATACAATAGTAAAAATATTAATTGATAGAAAGTAATAAATATCTG
196 ACCGGACGACAGTTCCTACAATACAATAGTAAAAATATTAATTGATAGAAAGTAATAAATATCTG
7243131 CCAATATTAAAAAATTCAAAATACCTCTGCATGAGCTACACACGCAAATATTTATAGTGTTTATT
261 CCAATATTAAAAAATTCAAAATACCTCTGCATGAGCTACACACGCAAATATTTATAGTGTTTATT
7243196 TTCTAATGATTTATTTCATTTATTGT
326 TTCTAATGATTTATTTCATTTATTGT
7243222 AATGCAACATAACTTAAAAATATTTGCATTACAATAAATGAAATAAATCATTAGAAAATAAACAC
1 AATGCAACATAACTTAAAAATATTTGCATTACAATAAATGAAATAAATCATTAGAAAATAAACAC
7243287 TATAAATAATTAAAACAAGTGAAATTGTATTAAGCAAACGTACCATAATTTCTGCAGCTTCAGGA
66 TATAAATAATTAAAACAAGTGAAATTGTATTAAGCAAACGTACCATAATTTCTGCAGCTTCAGGA
7243352 GTCATAGGGTTTCCATCTTTCTTCCTATGTGTAATGTCAAAAAGTTGAAGGCGTCCAACTTTTTG
131 GTCATAGGGTTTCCATCTTTCTTCCTATGTGTAATGTCAAAAAGTTGAAGGCGTCCAACTTTTTG
7243417 ACCGGACGACAGTTCCTACAATACAATAGTAAAAATATTAATTGATAGAAAGTAATAAATATCTG
196 ACCGGACGACAGTTCCTACAATACAATAGTAAAAATATTAATTGATAGAAAGTAATAAATATCTG
7243482 CCAATATTAAAAAATTCAAAATACCTCTGCATGAGCTACACACGCAAA
261 CCAATATTAAAAAATTCAAAATACCTCTGCATGAGCTACACACGCAAA
7243530 ACTTTTCGAC
Statistics
Matches: 307, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
351 307 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (351 bp):
AATGCAACATAACTTAAAAATATTTGCATTACAATAAATGAAATAAATCATTAGAAAATAAACAC
TATAAATAATTAAAACAAGTGAAATTGTATTAAGCAAACGTACCATAATTTCTGCAGCTTCAGGA
GTCATAGGGTTTCCATCTTTCTTCCTATGTGTAATGTCAAAAAGTTGAAGGCGTCCAACTTTTTG
ACCGGACGACAGTTCCTACAATACAATAGTAAAAATATTAATTGATAGAAAGTAATAAATATCTG
CCAATATTAAAAAATTCAAAATACCTCTGCATGAGCTACACACGCAAATATTTATAGTGTTTATT
TTCTAATGATTTATTTCATTTATTGT
Found at i:7248331 original size:9 final size:9
Alignment explanation
Indices: 7248314--7248948 Score: 174
Period size: 9 Copynumber: 72.2 Consensus size: 9
7248304 TAAGTATAAT
*
7248314 TAAGCTATG
1 TAAGTTATG
7248323 TAAGTTATG
1 TAAGTTATG
7248332 T-A-TTATG
1 TAAGTTATG
7248339 TAAGTTAT-
1 TAAGTTATG
*
7248347 TTA-TTATG
1 TAAGTTATG
* *
7248355 AAAATTATG
1 TAAGTTATG
*
7248364 TAAGTTGTG
1 TAAGTTATG
7248373 T-A-TTATG
1 TAAGTTATG
*
7248380 -AA--AAT-
1 TAAGTTATG
* *
7248385 TATGCTATG
1 TAAGTTATG
7248394 TAAGTTATG
1 TAAGTTATG
* *
7248403 TAAGTCATA
1 TAAGTTATG
*
7248412 TACGTTATG
1 TAAGTTATG
7248421 T-A-TTATG
1 TAAGTTATG
7248428 TAAGTTATG
1 TAAGTTATG
7248437 TAAGTTAT-
1 TAAGTTATG
*
7248445 TTA-TTATG
1 TAAGTTATG
* * *
7248453 AAAATTAAG
1 TAAGTTATG
7248462 TAAGTTATG
1 TAAGTTATG
* *
7248471 TAATTTACG
1 TAAGTTATG
*
7248480 -AA-TAAT-
1 TAAGTTATG
***
7248486 TAAAAAAATG
1 T-AAGTTATG
7248496 TAAGTTATG
1 TAAGTTATG
7248505 TAAG-T-TG
1 TAAGTTATG
7248512 TAAGTTATG
1 TAAGTTATG
*
7248521 TATA-ATAT-
1 TA-AGTTATG
**
7248529 TAA-TTAAC
1 TAAGTTATG
7248537 TAAGTTATG
1 TAAGTTATG
*
7248546 TAATTTATG
1 TAAGTTATG
*
7248555 TATAATATTAATG
1 --TAA-GTT-ATG
7248568 TAAGTTATG
1 TAAGTTATG
*
7248577 TAATTTATG
1 TAAGTTATG
*
7248586 TATAATATTAATG
1 --TAA-GTT-ATG
7248599 TAAGTTATG
1 TAAGTTATG
*
7248608 TAATTTATG
1 TAAGTTATG
*
7248617 -AA-TAAT-
1 TAAGTTATG
***
7248623 TAAAAAAATG
1 T-AAGTTATG
7248633 TAAGTTATG
1 TAAGTTATG
7248642 TAAG-T-TG
1 TAAGTTATG
7248649 TAAGTTATG
1 TAAGTTATG
*
7248658 TATA-ATAT-
1 TA-AGTTATG
**
7248666 TAA-TTAAC
1 TAAGTTATG
7248674 TAAGTTATG
1 TAAGTTATG
*
7248683 TAATTTATG
1 TAAGTTATG
*
7248692 TATAATATTAATG
1 --TAA-GTT-ATG
7248705 TAAGTTATG
1 TAAGTTATG
*
7248714 TAATTTATG
1 TAAGTTATG
7248723 AATAA-TTA--
1 --TAAGTTATG
* ***
7248731 AAAAAAATG
1 TAAGTTATG
7248740 TAAGTTATG
1 TAAGTTATG
7248749 TAAG-T-TG
1 TAAGTTATG
7248756 TAAGTTATG
1 TAAGTTATG
7248765 TAAGTTATG
1 TAAGTTATG
*
7248774 TATA-ATAT-
1 TA-AGTTATG
**
7248782 TAA-TTAAC
1 TAAGTTATG
7248790 TAAGTTATG
1 TAAGTTATG
*
7248799 TAATTTATG
1 TAAGTTATG
*
7248808 TATAATATTAATG
1 --TAA-GTT-ATG
7248821 TAAGTTATG
1 TAAGTTATG
*
7248830 TAATTTATG
1 TAAGTTATG
7248839 TATA-TTAAT-
1 TA-AGTT-ATG
7248848 TAAGTTATG
1 TAAGTTATG
7248857 T-AGTTTATG
1 TAAG-TTATG
*
7248866 TATAATATTAATG
1 --TAA-GTT-ATG
7248879 TAAGTTATG
1 TAAGTTATG
*
7248888 TAATTTATG
1 TAAGTTATG
*
7248897 -AA-TAAT-
1 TAAGTTATG
***
7248903 TAAAAAAATG
1 T-AAGTTATG
7248913 TAAGTTATG
1 TAAGTTATG
7248922 TAAG-T-TG
1 TAAGTTATG
7248929 TAAGTTATG
1 TAAGTTATG
7248938 TAAGTTATG
1 TAAGTTATG
7248947 TA
1 TA
7248949 TAATATTAAT
Statistics
Matches: 469, Mismatches: 84, Indels: 146
0.67 0.12 0.21
Matches are distributed among these distances:
6 5 0.01
7 67 0.14
8 52 0.11
9 266 0.57
10 22 0.05
11 31 0.07
12 11 0.02
13 15 0.03
ACGTcount: A:0.40, C:0.01, G:0.15, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7248340 original size:16 final size:16
Alignment explanation
Indices: 7248319--7248438 Score: 87
Period size: 16 Copynumber: 7.9 Consensus size: 16
7248309 ATAATTAAGC
7248319 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
7248335 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
7248351 TATG-AA---A---AT
1 TATGTAAGTTATGTAT
*
7248360 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * *
7248376 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
7248390 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* * *
7248408 CATATACGTTATGTAT
1 TATGTAAGTTATGTAT
7248424 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
7248439 AGTTATTTAT
Statistics
Matches: 78, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 11 0.14
15 2 0.03
16 44 0.56
17 1 0.01
18 11 0.14
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:7248361 original size:25 final size:25
Alignment explanation
Indices: 7248333--7248472 Score: 133
Period size: 25 Copynumber: 5.7 Consensus size: 25
7248323 TAAGTTATGT
*
7248333 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
*
7248358 ATTATGTAAGTTGTGTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* * *
7248383 ATTATGCTATG-TAAG--TTATGTAA
1 ATTATG-TAAGTTATGTATTATGAAA
* * * * *
7248406 GTCATATACGTTATGTATTATGTAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
7248431 GTTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
*
7248456 ATTAAGTAAGTTATGTA
1 ATTATGTAAGTTATGTA
7248473 ATTTACGAAT
Statistics
Matches: 92, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
22 3 0.03
23 13 0.14
25 73 0.79
26 3 0.03
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:7248465 original size:34 final size:34
Alignment explanation
Indices: 7248359--7248647 Score: 102
Period size: 34 Copynumber: 8.3 Consensus size: 34
7248349 ATTATGAAAA
* *
7248359 TTATGTAAGTTGTGTATTATGAAAATTATGCTATGTAAG
1 TTATGTAAGTTATATATTATGAAAATTA----A-GTAAG
* * *
7248398 TTATGTAAGTCATATACGTTATG--TATTATGTAAG
1 TTATGTAAGTTATATA--TTATGAAAATTAAGTAAG
*
7248432 TTATGTAAGTTATTTATTATGAAAATTAAGTAAG
1 TTATGTAAGTTATATATTATGAAAATTAAGTAAG
* * * * *
7248466 TTATGTAATTTACGA-ATAATTAAAA-AAATGTAAG
1 TTATGTAAGTTA-TATATTATGAAAATTAA-GTAAG
* * *
7248500 TTATGTAAGTTGTAAGTTATGTATAATATTAATTAACTAAG
1 TTATGTAAGTTAT-A--TAT-TATGA-A--AATTAAGTAAG
* *
7248541 TTATGTAA-TT-TAT-GTAT-AATATTAATGTAAG
1 TTATGTAAGTTATATATTATGAAAATTAA-GTAAG
* *
7248572 TTATGTAA-TT-TAT-GTAT-AATATTAATGTAAG
1 TTATGTAAGTTATATATTATGAAAATTAA-GTAAG
* * * *
7248603 TTATGTAATTTATGA-ATAATTAAAA-AAATGTAAG
1 TTATGTAAGTTAT-ATATTATGAAAATTAA-GTAAG
7248637 TTATGTAAGTT
1 TTATGTAAGTT
7248648 GTAAGTTATG
Statistics
Matches: 199, Mismatches: 30, Indels: 47
0.72 0.11 0.17
Matches are distributed among these distances:
30 5 0.03
31 43 0.22
32 8 0.04
33 4 0.02
34 87 0.44
35 3 0.02
36 1 0.01
37 2 0.01
38 4 0.02
39 19 0.10
40 2 0.01
41 19 0.10
42 2 0.01
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (34 bp):
TTATGTAAGTTATATATTATGAAAATTAAGTAAG
Found at i:7248572 original size:56 final size:56
Alignment explanation
Indices: 7248510--7249403 Score: 323
Period size: 56 Copynumber: 15.0 Consensus size: 56
7248500 TTATGTAAGT
*
7248510 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAATATTAA
* * * **
7248566 TGTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGAATAATTAAAAAAA
1 TGTAAGTTATGT-A--TA-ATATTA-ATTAA-GTAAGTTATGTAATTTATGTATAA-T--ATTAA
* * * *
7248631 TGTAAGTTATGTA-AGT-TGTAAGTTATGTATA-ATAT-TAA-TTA---ACTAA-GTT-A
1 TGTAAGTTATGTATAATAT-TAA-TTAAGTA-AGTTATGTAATTTATGTA-TAATATTAA
* *
7248681 TGTAATTTATGTATAATATTAA-T--GTAAGTTATGTAATTTATGAAT-A-ATTAA
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAATATTAA
*** * *
7248732 ---AAAAAATGTA-AGTTATGTAAGTT--GTAAGTTATGTAAGTTATGTATAATATTAA
1 TGTAAGTTATGTATA-ATAT-TAA-TTAAGTAAGTTATGTAATTTATGTATAATATTAA
* * * *
7248785 TTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGTATATTAATTA
1 -T--GTAAGTTATGT-A--TA-ATATTA-ATTAA-GTAAGTTATGTAATTTATGTATAAT-ATTA
7248850 A
56 A
* **
7248851 -GTTATGTAGTTTATGTATAATATTAA-T--GTAAGTTATGTAATTTATGAATAATTAAAAAAA
1 TG-TA---AG-TTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAA-T--ATTAA
* *
7248911 TGTAAGTTATGTA-AGT-TGTAAGTTATGTAAGTTATGTATAATATTAAT-TAATTAATTAAGTT
1 TGTAAGTTATGTATAATAT-TAA-TTAAGTAAGTTATG--TAAT-TT-ATGT-A-TAA-T-A-TT
7248973 -A
55 AA
* *
7248974 TGTAATTTATGTATAATATTAA-T--GTAAGTTATGTATAATATTAAT-TAATTAA-GTT-A
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATG--TAAT-TT-ATGT-A-TAATATTAA
* *
7249030 TGTAATTTATGTATAATACTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTCAT
1 TGTAAGTTATGTAT-A-A-T-ATTAATTAAGTAAGTTATGTAATTTATG-----TA-TAA-T-AT
7249095 TAAGTTA
54 T-A---A
* * *
7249102 TGTAATTTATGTATAATATTAATTAATTAA-TTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATG-TA----ATTTATGTATAATATTAA
* *
7249162 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAAGTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAATATTAA
* * * * *
7249218 TTAACTAAGTTATGTAATTTATGTATAATACTGATTAAATTAA-TTAAGTTATGTAATTTATGTA
1 -T--GTAAGTTATGT-A--TA---AT-AT--TAATT-AAGTAAGTTATG-TA--A--TTTATGTA
7249282 TAATATTAA
48 TAATATTAA
* *
7249291 TGTAAGTTATGTATAATATTAATTCATTAAGTTATGTAATTTATGTATAATATTAA
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAATATTAA
* *
7249347 TGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATACTAA
1 TGTAAGTTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAATATTAA
7249403 T
1 T
7249404 TAATTAATTA
Statistics
Matches: 665, Mismatches: 62, Indels: 222
0.70 0.07 0.23
Matches are distributed among these distances:
46 1 0.00
47 7 0.01
48 13 0.02
49 7 0.01
50 16 0.02
51 28 0.04
52 3 0.00
53 5 0.01
54 2 0.00
55 8 0.01
56 125 0.19
57 9 0.01
58 26 0.04
59 40 0.06
60 94 0.14
61 29 0.04
62 31 0.05
63 42 0.06
64 23 0.03
65 43 0.06
66 13 0.02
67 16 0.02
68 23 0.03
69 10 0.02
70 11 0.02
71 1 0.00
72 23 0.03
73 16 0.02
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (56 bp):
TGTAAGTTATGTATAATATTAATTAAGTAAGTTATGTAATTTATGTATAATATTAA
Found at i:7248691 original size:34 final size:34
Alignment explanation
Indices: 7248510--7249453 Score: 465
Period size: 34 Copynumber: 29.1 Consensus size: 34
7248500 TTATGTAAGT
* *
7248510 TGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
7248544 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
7248575 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * **
7248606 TGTAATTTATGAATAAT-TAAAAAAATGTAAGTTA
1 TGTAATTTATGTATAATATTAATTAA-GTAAGTTA
*
7248640 TGTAAGTTGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAA----T---TTATGTATAATATTAATTAAGTAAGTTA
7248681 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
7248712 TGTAATTTATGAAT-A-ATTAA--AA--AA--AA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * *
7248738 TGTAAGTTATGTA-AGT-TGTAAGTTATGTAAGTTA
1 TGTAATTTATGTATAATAT-TAA-TTAAGTAAGTTA
* *
7248772 TGTATAATATTAAT-TAACTAAGTTATGTAATTTATGTATAATATTAA
1 TG--TAAT-TT-ATGT-A-TAA--TAT-TAA-TTAAG--TAA-GTT-A
* * *
7248819 TGTAAGTTATGTA-ATTTATGTATATTAATTAAGTTA
1 TGTAATTTATGTATA-ATAT-TA-ATTAAGTAAGTTA
*
7248855 TGTAGTTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7248886 TGTAATTTATGAAT-A-ATTAA--AA--AA---A
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * *
7248911 TGTAAGTTATGTA-AGT-TGTAAGTTATGTAAGTTA
1 TGTAATTTATGTATAATAT-TAA-TTAAGTAAGTTA
* *
7248945 TGT-ATAATAT-TA-ATTAATTAATTAAGT----TA
1 TGTAAT-TTATGTATAAT-ATTAATTAAGTAAGTTA
7248974 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249005 TG-----TA--T--AATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249030 TGTAATTTATGTATAATACTAATTAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATTAATTAAGTAAGTTA
* *
7249068 TGTAATTTATGTATAATATTAATTCATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249102 TGTAATTTATGTATAATATTAATTAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATTAATTAAGTAAGTTA
7249140 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249171 TG-----TA--T--AATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
7249196 TGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249230 TGTAATTTATGTATAATACTGATTAAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATT-AATTAAGTAAGTTA
7249269 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
7249300 TG-----TA--T--AATATTAATTCATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
7249325 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249356 TG-----TA--T--AATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
7249381 TGTAATTTATGTATAATACTAATTAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATTAATTAAGTAAGTTA
7249419 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
7249450 TGTA
1 TGTA
7249454 TAATATTAAT
Statistics
Matches: 724, Mismatches: 56, Indels: 263
0.69 0.05 0.25
Matches are distributed among these distances:
22 32 0.04
23 4 0.01
24 4 0.01
25 49 0.07
26 24 0.03
27 5 0.01
28 4 0.01
29 20 0.03
30 23 0.03
31 139 0.19
32 6 0.01
33 17 0.02
34 146 0.20
35 13 0.02
36 26 0.04
37 15 0.02
38 103 0.14
39 27 0.04
40 10 0.01
41 24 0.03
42 6 0.01
43 13 0.02
44 3 0.00
45 6 0.01
46 2 0.00
47 3 0.00
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (34 bp):
TGTAATTTATGTATAATATTAATTAAGTAAGTTA
Found at i:7248759 original size:16 final size:16
Alignment explanation
Indices: 7248738--7248770 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7248728 TTAAAAAAAA
7248738 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7248754 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7248770 T
1 T
7248771 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:7248932 original size:16 final size:16
Alignment explanation
Indices: 7248911--7248943 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7248901 ATTAAAAAAA
7248911 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7248927 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
7248943 T
1 T
7248944 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:7249033 original size:119 final size:118
Alignment explanation
Indices: 7248762--7249504 Score: 417
Period size: 128 Copynumber: 6.1 Consensus size: 118
7248752 GTTGTAAGTT
* *
7248762 ATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGT-ATAAT-ATTAATGTAAG
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTAATTATAATTAATGTAAG
*
7248825 TTATG--TAAT-TT-ATGTATATTAATTAAGTTATGTAGTTTATGTATAATATTA
66 TTATGTATAATATTAAT-TA-ATTAATTAAGTTATGTAATTTATGTATAATATTA
* * *** * *
7248876 ATGTAAGTTATGTA-ATTTATGAA-TAATTAAAAAAATGTAAGTTATGTAAGTTGTAAGTT-ATG
1 ATGTAAGTTATGTATA-ATATTAATTAATT-AAGTTATGTAATTTATGTAA-TTATAA-TTAATG
7248938 TAAGTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
62 TAAGTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
7248995 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATACTAATTAATTAA
1 ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATG--TAAT--T-A-TAATTAA
* * *
7249060 T-TAAGTTATGTAATTTATGTATAATATTAATTCATTAAGTTATGTAATTTATGTATAATATTA
60 TGTAAGTTATGT-A--TA-ATATTA-ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
* * * * *
7249123 AT-TAA-TTAAT-TA-AGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAA
1 ATGTAAGTT-ATGTATA-ATAT-TAA-TTA-AT-TAA-GTT-ATGTAATTTATGTA-ATTA-TAA
* * *
7249184 TTAAT-TAAGTTATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATA
56 TTAATGTAAGTTATGT-A--TA-ATATTA-ATTAATTAATTAAGTTATGTAATTTATGTAT-A-A
7249248 CTGATTAA
114 -T-ATT-A
* * * *
7249256 ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-ATAATAT-TAATTCATT
1 A-T--GTAAGTTATGT-A--TA-ATATTA-ATTAAT-TAAGTTATGTAAT-TTATGTAATT-A-T
* * *
7249319 AAGTT-ATGTAATTTATGTATAATATTAATGTAAGTT-ATGTATA-ATAT-TAA-TTA-AT-TAA
54 AA-TTAATGTAAGTTATGTATAATATTAAT-TAA-TTAAT-TA-AGTTATGTAATTTATGTATAA
*
7249377 -GTT-
114 TATTA
* *
7249380 ATGTAATTTATGTATAATACTAATTAATTAATTAAGTTATGTAATTTATGT-ATAAT-ATTAATG
1 ATGTAAGTTATGTAT-A-A-T-ATTAATTAATTAAGTTATGTAATTTATGTAATTATAATTAATG
*
7249443 TAAGTTATG-----TA-TAA-T-ATTAATTCA-TTATGTAATTTATGTATAATATTA
62 TAAGTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
7249491 ATGTAAGTTATGTA
1 ATGTAAGTTATGTA
7249505 ATCTATGTAT
Statistics
Matches: 503, Mismatches: 56, Indels: 143
0.72 0.08 0.20
Matches are distributed among these distances:
105 4 0.01
106 6 0.01
107 6 0.01
108 2 0.00
109 3 0.01
110 5 0.01
111 15 0.03
113 5 0.01
114 33 0.07
115 3 0.01
116 14 0.03
117 14 0.03
118 4 0.01
119 86 0.17
120 22 0.04
121 17 0.03
122 1 0.00
123 13 0.03
124 7 0.01
125 1 0.00
126 11 0.02
127 12 0.02
128 104 0.21
129 4 0.01
130 7 0.01
131 5 0.01
132 15 0.03
133 7 0.01
134 12 0.02
135 9 0.02
136 3 0.01
137 16 0.03
138 21 0.04
139 3 0.01
140 4 0.01
141 4 0.01
142 5 0.01
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (118 bp):
ATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTAATTATAATTAATGTAAG
TTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
Found at i:7249293 original size:22 final size:22
Alignment explanation
Indices: 7249268--7249313 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7249258 TAATTAAGTT
*
7249268 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
7249290 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
7249312 AT
1 AT
7249314 TCATTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:7249293 original size:129 final size:128
Alignment explanation
Indices: 7248929--7249347 Score: 548
Period size: 128 Copynumber: 3.2 Consensus size: 128
7248919 ATGTAAGTTG
* * *
7248929 TAAGTTATGTAAGTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTATAATATT
1 TAAGTTATGTAATTTATGTAT-A-A-T-ATTAATTAACTAAGTTATGTAATTTATGTATAATACT
* * * *
7248994 AATGTAAGTT-ATGTATA-ATAT-TAA-TTA-AT-TAA-GTT-ATGTAATTTATGTATAATACTA
62 AAT-TAA-TTAAT-TA-AGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAT-A-A-T-
7249051 ATTAATTAAT
119 ATTAATTAAT
* * *
7249061 TAAGTTATGTAATTTATGTATAATATTAATTCATTAAGTTATGTAATTTATGTATAATATTAATT
1 TAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATACTAATT
7249126 AATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAAT
66 AATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAAT
* *
7249189 TAAGTTATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATACTGATT
1 TAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATACTAATT
*
7249254 AAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTCAT
66 -AATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAAT
7249318 TAAGTTATGTAATTTATGTATAATATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAAT
7249348 GTAAGTTATG
Statistics
Matches: 265, Mismatches: 13, Indels: 21
0.89 0.04 0.07
Matches are distributed among these distances:
125 1 0.00
126 7 0.03
127 8 0.03
128 112 0.42
129 94 0.35
130 5 0.02
131 4 0.02
132 34 0.13
ACGTcount: A:0.41, C:0.01, G:0.10, T:0.48
Consensus pattern (128 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATACTAATT
AATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTAATTAAT
Found at i:7249349 original size:22 final size:22
Alignment explanation
Indices: 7249324--7249374 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
7249314 TCATTAAGTT
7249324 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
*
7249346 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
7249368 AT-TAATT
1 ATGTAATT
7249375 AAGTTATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:7249444 original size:51 final size:49
Alignment explanation
Indices: 7249316--7249495 Score: 160
Period size: 51 Copynumber: 3.7 Consensus size: 49
7249306 ATATTAATTC
*
7249316 ATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTA
1 ATTAA-TTATGTAATTTATGTATAATATTAATGT-AG-TATATATAATATTA
* * * * * *
7249368 ATTAATTAAGTTATGTAATTTAT-GTA-TAA--TACTA-AT-T-A-ATTA
1 ATTAATTATGTAAT-TTATGTATAATATTAATGTAGTATATATAATATTA
*
7249410 ATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATATTA
1 ATTAA-TTATGTAATTTATGTATAATATTAATGT-AG-TATATATAATATTA
*
7249462 ATTCATTATGTAATTTATGTATAATATTAATGTA
1 ATTAATTATGTAATTTATGTATAATATTAATGTA
7249496 AGTTATGTAA
Statistics
Matches: 101, Mismatches: 15, Indels: 26
0.71 0.11 0.18
Matches are distributed among these distances:
42 15 0.15
43 10 0.10
44 4 0.04
45 1 0.01
46 3 0.03
47 2 0.02
48 3 0.03
49 1 0.01
50 5 0.05
51 38 0.38
52 19 0.19
ACGTcount: A:0.41, C:0.01, G:0.10, T:0.48
Consensus pattern (49 bp):
ATTAATTATGTAATTTATGTATAATATTAATGTAGTATATATAATATTA
Found at i:7249495 original size:22 final size:22
Alignment explanation
Indices: 7249380--7249463 Score: 90
Period size: 22 Copynumber: 4.1 Consensus size: 22
7249370 TAATTAAGTT
*
7249380 ATGTAATTTATGTATAATACTA
1 ATGTAATTTATGTATAATATTA
* *
7249402 AT-TAA-TTA-AT-TAA-GTT-
1 ATGTAATTTATGTATAATATTA
7249418 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
*
7249440 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATAATATTA
7249462 AT
1 AT
7249464 TCATTATGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
16 2 0.04
17 4 0.08
18 6 0.12
19 2 0.04
20 6 0.12
21 5 0.10
22 25 0.50
ACGTcount: A:0.42, C:0.01, G:0.10, T:0.48
Consensus pattern (22 bp):
ATGTAATTTATGTATAATATTA
Found at i:7249496 original size:51 final size:52
Alignment explanation
Indices: 7249406--7249504 Score: 182
Period size: 51 Copynumber: 1.9 Consensus size: 52
7249396 ATACTAATTA
7249406 ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
1 ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
*
7249458 ATTAATTCA-TTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
1 ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
7249505 ATCTATGTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 38 0.83
52 8 0.17
ACGTcount: A:0.39, C:0.01, G:0.11, T:0.48
Consensus pattern (52 bp):
ATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAAT
Found at i:7252915 original size:37 final size:38
Alignment explanation
Indices: 7252874--7252945 Score: 128
Period size: 37 Copynumber: 1.9 Consensus size: 38
7252864 CATAACCCCT
*
7252874 TAACCCTTTACCCCTAAAT-CCCCTAACCCCTAAAACA
1 TAACCCTTAACCCCTAAATCCCCCTAACCCCTAAAACA
7252911 TAACCCTTAACCCCTAAATCCCCCTAACCCCTAAA
1 TAACCCTTAACCCCTAAATCCCCCTAACCCCTAAA
7252946 CATTAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 18 0.55
38 15 0.45
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (38 bp):
TAACCCTTAACCCCTAAATCCCCCTAACCCCTAAAACA
Found at i:7252941 original size:7 final size:7
Alignment explanation
Indices: 7252866--7252944 Score: 50
Period size: 7 Copynumber: 10.4 Consensus size: 7
7252856 CCCAAATCCA
7252866 TAACCCC
1 TAACCCC
*
7252873 TTAACCCT
1 -TAACCCC
*
7252881 TTACCCC
1 TAACCCC
7252888 TAAATCCCC
1 T-AA-CCCC
7252897 TAACCCC
1 TAACCCC
** *
7252904 TAAAACA
1 TAACCCC
*
7252911 TAACCCT
1 TAACCCC
7252918 TAACCCC
1 TAACCCC
7252925 TAAATCCCCC
1 T-AA--CCCC
7252935 TAACCCC
1 TAACCCC
7252942 TAA
1 TAA
7252945 ACATTAAATT
Statistics
Matches: 55, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
7 32 0.58
8 11 0.20
9 7 0.13
10 5 0.09
ACGTcount: A:0.33, C:0.46, G:0.00, T:0.22
Consensus pattern (7 bp):
TAACCCC
Found at i:7253672 original size:15 final size:16
Alignment explanation
Indices: 7253652--7253689 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7253642 ACCGTTGAAA
7253652 CCCTAAATCTCA-AAC
1 CCCTAAATCTCATAAC
*
7253667 CCCTAAA-CTTATAAC
1 CCCTAAATCTCATAAC
7253682 CCCTAAAT
1 CCCTAAAT
7253690 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (16 bp):
CCCTAAATCTCATAAC
Found at i:7254264 original size:41 final size:40
Alignment explanation
Indices: 7254196--7254435 Score: 160
Period size: 41 Copynumber: 5.9 Consensus size: 40
7254186 TTTTGTTACT
* ** *
7254196 ATTAGCGGCGCTTCGGCAAAAATGCCGCTAAAGGTAAATAC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGTAAA-AC
* * * **
7254237 ATTAGCGGCGCTTAGCTACAAACGCCGCTGAAGACAAGAGA-
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGTAA-A-AC
* * * * * ** *
7254278 ATTAGTGGCGCTCAGTTAAAAATGCCGCTAAAGATCCGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGT-AAAAC
* * * *
7254319 ATTAGCGGCGCTTATATAAAAACGCCGCCAAAGGCTAGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGG-TAAAAC
**** *
7254360 ATTAGCGGCG-TTCAGATAAAAACGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTT-AGATAAAAACGCCGCTAAAG-GTAAAAC
*
7254401 ATTAGCGGTGCTTAGATAAAAACGCCGCTAAAGGT
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGT
7254436 TTAAAAAATT
Statistics
Matches: 157, Mismatches: 35, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
40 2 0.01
41 150 0.96
42 5 0.03
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (40 bp):
ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGTAAAAC
Found at i:7254434 original size:82 final size:82
Alignment explanation
Indices: 7254236--7254434 Score: 272
Period size: 82 Copynumber: 2.4 Consensus size: 82
7254226 AAGGTAAATA
* * * * * * *
7254236 CATTAGCGGCGCTTAGCTACAAACGCCGCTGAAGACAAGAGAATTAGTGGCGCTCAGTTAAAAAT
1 CATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCAAGAGAATTAGCGGCGCTCAGATAAAAAC
*
7254301 GCCGCTAAAGATCCGAG
66 GCCGCTAAAGACCCGAG
* * * * *
7254318 CATTAGCGGCGCTTATATAAAAACGCCGCCAAAGGCTAGAGCATTAGCGGCGTTCAGATAAAAAC
1 CATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCAAGAGAATTAGCGGCGCTCAGATAAAAAC
7254383 GCCGCTAAAGACCCGAG
66 GCCGCTAAAGACCCGAG
*
7254400 CATTAGCGGTGCTTAGATAAAAACGCCGCTAAAGG
1 CATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGG
7254435 TTTAAAAAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 101 1.00
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.18
Consensus pattern (82 bp):
CATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGGCAAGAGAATTAGCGGCGCTCAGATAAAAAC
GCCGCTAAAGACCCGAG
Found at i:7254603 original size:40 final size:39
Alignment explanation
Indices: 7254491--7254606 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 39
7254481 GCGCTTTATA
* * *
7254491 TAAAACGCCGCTAATTC-CTATTTTTAGCGGCGCTTCCGG
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTT-TGG
* * **
7254530 AAAATCGCCGCTGATGCTCTACCTTTAGCGGCGCTTTGG
1 TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTTGG
* * *
7254569 CTAAATCGCCGCTAATGCTCGATTTTTTGTGGCGCTTT
1 -TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTT
7254607 TGTTCCAAAC
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 15 0.25
40 46 0.75
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (39 bp):
TAAATCGCCGCTAATGCTCTATTTTTAGCGGCGCTTTGG
Found at i:7255276 original size:18 final size:18
Alignment explanation
Indices: 7255253--7255287 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7255243 TTTTAAAGGC
7255253 TTGAAAGTTTGAAAATAT
1 TTGAAAGTTTGAAAATAT
* *
7255271 TTGAAATTTTTAAAATA
1 TTGAAAGTTTGAAAATA
7255288 AATGTTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
TTGAAAGTTTGAAAATAT
Found at i:7256381 original size:67 final size:68
Alignment explanation
Indices: 7256267--7256404 Score: 235
Period size: 67 Copynumber: 2.0 Consensus size: 68
7256257 TGATAACTCC
* *
7256267 CTTGGAAATCAACTTCAATGGTGTTCGTTGGGTAATTTTTTTGCTATCTCTTGACAT-TTGCTTA
1 CTTGGAAATCAACTTCAATGGTGTTCGTTGGGTAATTTTTGTCCTATCTCTTGACATCTT-CTTA
7256331 -TCT
65 TTCT
7256334 CTTGGAAATCAACTTCAATGGTGTTCGTTGGGTAATTTTTGTCCTATCTCTTGACATCTTCTTAT
1 CTTGGAAATCAACTTCAATGGTGTTCGTTGGGTAATTTTTGTCCTATCTCTTGACATCTTCTTAT
7256399 TCT
66 TCT
7256402 CTT
1 CTT
7256405 TTGTTTCCTT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
67 59 0.88
68 8 0.12
ACGTcount: A:0.19, C:0.18, G:0.17, T:0.46
Consensus pattern (68 bp):
CTTGGAAATCAACTTCAATGGTGTTCGTTGGGTAATTTTTGTCCTATCTCTTGACATCTTCTTAT
TCT
Found at i:7256828 original size:35 final size:35
Alignment explanation
Indices: 7256782--7256876 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 35
7256772 ATCCTAGCCT
7256782 GTAAGGAGTGGCTCTTGTCTCGCTGAGTGCTACAC
1 GTAAGGAGTGGCTCTTGTCTCGCTGAGTGCTACAC
7256817 GTAAGGAGTGGCTCTTGTCT--C-----GC--CAC
1 GTAAGGAGTGGCTCTTGTCTCGCTGAGTGCTACAC
*
7256843 GTAAGGAGTGGCTCTTGTCTCGTTGAGTGCTACA
1 GTAAGGAGTGGCTCTTGTCTCGCTGAGTGCTACA
7256877 TGTTGGAGCA
Statistics
Matches: 50, Mismatches: 1, Indels: 18
0.72 0.01 0.26
Matches are distributed among these distances:
26 23 0.46
28 2 0.04
33 3 0.06
35 22 0.44
ACGTcount: A:0.17, C:0.22, G:0.32, T:0.29
Consensus pattern (35 bp):
GTAAGGAGTGGCTCTTGTCTCGCTGAGTGCTACAC
Found at i:7257361 original size:30 final size:29
Alignment explanation
Indices: 7257299--7257362 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
7257289 AAATTGGGAC
* *
7257299 TTTAGTCCTTATACTTTTATTTTTAGAAA
1 TTTAGTCCTTATACTTTTAATTTCAGAAA
*
7257328 TTTAGTCCTTTTACTTTTCAGATTTCA-AAA
1 TTTAGTCCTTATACTTTT-A-ATTTCAGAAA
7257358 TTTAG
1 TTTAG
7257363 ATCCAACTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 17 0.57
30 9 0.30
31 4 0.13
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (29 bp):
TTTAGTCCTTATACTTTTAATTTCAGAAA
Found at i:7257996 original size:29 final size:29
Alignment explanation
Indices: 7257953--7258011 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
7257943 AAATTGAATT
** * * *
7257953 AAAATTAAATTTTATGTATATACTTACAC
1 AAAATTAAAAATTATATATAAAATTACAC
7257982 AAAATTAAAAATTATATATAAAATTACAC
1 AAAATTAAAAATTATATATAAAATTACAC
7258011 A
1 A
7258012 TTAAACCAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (29 bp):
AAAATTAAAAATTATATATAAAATTACAC
Found at i:7258319 original size:21 final size:22
Alignment explanation
Indices: 7258279--7258320 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7258269 TATTAAATTA
**
7258279 TTTTATAATAATATTTATATAT
1 TTTTATAATAATATACATATAT
7258301 TTTTATAA-AATATACATATA
1 TTTTATAATAATATACATATA
7258321 ATATGATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTATAATAATATACATATAT
Found at i:7258480 original size:21 final size:21
Alignment explanation
Indices: 7258446--7258488 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7258436 TGTTACATAA
7258446 ATTTAATTTAAAAAT-TAAAT
1 ATTTAATTTAAAAATATAAAT
*
7258466 ATTTACATTTGAAAATATAAAT
1 ATTTA-ATTTAAAAATATAAAT
7258488 A
1 A
7258489 AATTATTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
ATTTAATTTAAAAATATAAAT
Found at i:7263470 original size:20 final size:20
Alignment explanation
Indices: 7263434--7263471 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7263424 AAATTATAAT
*
7263434 TAATTTTATTTAAGTTTAAA
1 TAATTTTATTAAAGTTTAAA
7263454 TAATTTT-TTAAATGTTTA
1 TAATTTTATTAAA-GTTTA
7263472 TTAGAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TAATTTTATTAAAGTTTAAA
Found at i:7267743 original size:15 final size:15
Alignment explanation
Indices: 7267723--7267777 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
7267713 TTAATTATTT
7267723 TTATTATTATTGCTA
1 TTATTATTATTGCTA
*
7267738 TTATTATT-TT-ATCA
1 TTATTATTATTGCT-A
* *
7267752 CTATTTATTATTGCTC
1 TTA-TTATTATTGCTA
7267768 TTATTATTAT
1 TTATTATTAT
7267778 ATTTGATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
13 1 0.03
14 5 0.16
15 20 0.65
16 4 0.13
17 1 0.03
ACGTcount: A:0.25, C:0.09, G:0.04, T:0.62
Consensus pattern (15 bp):
TTATTATTATTGCTA
Found at i:7272986 original size:16 final size:16
Alignment explanation
Indices: 7272940--7272993 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
7272930 TTATGTAAAA
7272940 TTCTTCTTCATCCTCTAT
1 TTCTT-TTCATCCTCT-T
* *
7272958 TTATTTTCTTCCTCTT
1 TTCTTTTCATCCTCTT
* *
7272974 TTCTTTTCCTCCTCAT
1 TTCTTTTCATCCTCTT
7272990 TTCT
1 TTCT
7272994 CTCATAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
16 18 0.58
17 9 0.29
18 4 0.13
ACGTcount: A:0.07, C:0.31, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTTTCATCCTCTT
Found at i:7274700 original size:25 final size:24
Alignment explanation
Indices: 7274655--7274734 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
7274645 TCCGACCCAC
*
7274655 AGAGCATACCGATTTATAGCTCGTA
1 AGAGCATACCGA-TTACAGCTCGTA
*
7274680 AGAGCATACTGATCTACAGCTCG-A
1 AGAGCATACCGAT-TACAGCTCGTA
*
7274704 GTGAGCATACCGATTCACAGCTCGTA
1 -AGAGCATACCGATT-ACAGCTCGTA
*
7274730 TGAGC
1 AGAGC
7274735 GTACATGTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
24 3 0.06
25 43 0.91
26 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (24 bp):
AGAGCATACCGATTACAGCTCGTA
Found at i:7277050 original size:47 final size:47
Alignment explanation
Indices: 7276970--7277095 Score: 175
Period size: 46 Copynumber: 2.7 Consensus size: 47
7276960 TCAACAATTT
*
7276970 ATCTGCTCGACTAGTAG-TTATCCACAACGTATTTTAGTCGGCAGTC
1 ATCTGCTCGACTAGTAGTTTATCCACAACATATTTTAGTCGGCAGTC
* * * *
7277016 ATCTACTCGACTAGTAGTTTATCCGCAATATATTTTAGTCGGTAGTC
1 ATCTGCTCGACTAGTAGTTTATCCACAACATATTTTAGTCGGCAGTC
* *
7277063 ATCTGCT-GACTAGTGGTTCATCCACAACATATT
1 ATCTGCTCGACTAGTAGTTTATCCACAACATATT
7277096 AGCAGTTGTT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
46 38 0.55
47 31 0.45
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.35
Consensus pattern (47 bp):
ATCTGCTCGACTAGTAGTTTATCCACAACATATTTTAGTCGGCAGTC
Found at i:7277684 original size:226 final size:226
Alignment explanation
Indices: 7277287--7277739 Score: 710
Period size: 226 Copynumber: 2.0 Consensus size: 226
7277277 TTGCATAGAC
* * *
7277287 GTGAATATTGAGATATCATGGTGATGAATTTATTCGAAATACCAAAATTTTGAATTGCTATTCAA
1 GTGAATATTGAGATATCATGATGACGAATTGATTCGAAATACCAAAATTTTGAATTGCTATTCAA
* *
7277352 TTGTGATCATTCTATGAGTTGATATTTTGTACAATTTGTCTATTGTTTGCACTGGTTTTCTTGTG
66 TTGTGATCATTCTATAAGTTGATATTTTGTACAATTTGTCTAATGTTTGCACTGGTTTTCTTGTG
* *
7277417 ATTGAACTCACACTGAGCTCCATAAACGCACTCCCCCTCTTATTTCCATCTTTACAGATAACTCA
131 ATTGAACTCACACTAAGCTCCATAAACGCACTCCCCCTCTTATTTCCATCTTTACAGATAACCCA
*
7277482 CTAGGTTAGGACG-AGGACTCGGTATACAGAG
196 CTAGGTTAGGACGCA-GACTCAGTATACAGAG
* * * *
7277513 GTGAATATTGAGATATTATGATGACGAGTTGATTTGAAATACCAAAATTTTGAATTTCTATTCAA
1 GTGAATATTGAGATATCATGATGACGAATTGATTCGAAATACCAAAATTTTGAATTGCTATTCAA
**
7277578 TTGTGATCATTCTATAAGTTGATATTTTGTATGATTTGTCTAATGTTTGCACTGGTTTTCTTGTG
66 TTGTGATCATTCTATAAGTTGATATTTTGTACAATTTGTCTAATGTTTGCACTGGTTTTCTTGTG
* ** *
7277643 ATTGAACTCATACTAAGCTCCATAAGTGCACTCCTCCTCTTATTTCCATCTTTACAGATAACCCA
131 ATTGAACTCACACTAAGCTCCATAAACGCACTCCCCCTCTTATTTCCATCTTTACAGATAACCCA
* *
7277708 TTAGGTTAGGATGCAGACTCAGTATACAGAG
196 CTAGGTTAGGACGCAGACTCAGTATACAGAG
7277739 G
1 G
7277740 ACTCGACTCA
Statistics
Matches: 206, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
226 205 1.00
227 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (226 bp):
GTGAATATTGAGATATCATGATGACGAATTGATTCGAAATACCAAAATTTTGAATTGCTATTCAA
TTGTGATCATTCTATAAGTTGATATTTTGTACAATTTGTCTAATGTTTGCACTGGTTTTCTTGTG
ATTGAACTCACACTAAGCTCCATAAACGCACTCCCCCTCTTATTTCCATCTTTACAGATAACCCA
CTAGGTTAGGACGCAGACTCAGTATACAGAG
Found at i:7278453 original size:9 final size:9
Alignment explanation
Indices: 7278436--7278472 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7278426 TGAGTTTTCG
7278436 AATTCGAAT
1 AATTCGAAT
*
7278445 AACTCGAAT
1 AATTCGAAT
7278454 AATTCGAAT
1 AATTCGAAT
7278463 AATTCGAAT
1 AATTCGAAT
7278472 A
1 A
7278473 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7282907 original size:75 final size:76
Alignment explanation
Indices: 7282808--7282950 Score: 216
Period size: 75 Copynumber: 1.9 Consensus size: 76
7282798 TCCTCCTAAG
* * *
7282808 CTTCCCAAGAGCCTTGTTATCCATATTGATGTTCTTTCCATACTTTTTCTTAATTAATTTATTGA
1 CTTCCCAAGAG-C-TGTTATCCATATCGATGTCCTTTCCATACTTTTTCTTAATTAATTTAATGA
7282873 AGTGCTCTAAAAC
64 AGTGCTCTAAAAC
**
7282886 CTTCCCAAGAG-TGTTATCCATATCGATGTCCTTTCCATGTTTTTTCTTAATTAATTTAATGAAG
1 CTTCCCAAGAGCTGTTATCCATATCGATGTCCTTTCCATACTTTTTCTTAATTAATTTAATGAAG
7282950 T
66 T
7282951 CAAACTCTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
75 49 0.82
78 11 0.18
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (76 bp):
CTTCCCAAGAGCTGTTATCCATATCGATGTCCTTTCCATACTTTTTCTTAATTAATTTAATGAAG
TGCTCTAAAAC
Found at i:7290654 original size:21 final size:21
Alignment explanation
Indices: 7290628--7290671 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7290618 ACACCAAAAC
*
7290628 AGGCTTTTAGCGGCCTTTTTT
1 AGGCTTTTAGCAGCCTTTTTT
*
7290649 AGGCTTTTAGCAGCGTTTTTT
1 AGGCTTTTAGCAGCCTTTTTT
7290670 AG
1 AG
7290672 CGCCACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.16, G:0.25, T:0.45
Consensus pattern (21 bp):
AGGCTTTTAGCAGCCTTTTTT
Found at i:7290871 original size:43 final size:43
Alignment explanation
Indices: 7290788--7291039 Score: 260
Period size: 43 Copynumber: 5.9 Consensus size: 43
7290778 TCGTGGGCGG
* *
7290788 TGGCCTTTAGCGGCGCTTTTAC-ACAAACGCCGCTAAAGATCG
1 TGGCCTTTAGCGACGCTTTTACTACAAACGCCGCTAAAGATCA
* *
7290830 TGGCCTTTAGCGACGCTTCTACTACAAACGCTGCTAAAGATCA
1 TGGCCTTTAGCGACGCTTTTACTACAAACGCCGCTAAAGATCA
* * *
7290873 TGGTCTTTAGCGACGCTTTTATTAAAAACGCCGCTAAAGATCA
1 TGGCCTTTAGCGACGCTTTTACTACAAACGCCGCTAAAGATCA
** * * * * *
7290916 TAACCTTTAGCGGCGCTTTT-GTCACAAATGCCGCTAAAAATTA
1 TGGCCTTTAGCGACGCTTTTACT-ACAAACGCCGCTAAAGATCA
* * * **
7290959 TGACCTTTAGCGGCGCTTTTTGCCGCAAACGCCGCTAAA-ATCCA
1 TGGCCTTTAGCGACGC-TTTTACTACAAACGCCGCTAAAGAT-CA
* *
7291003 TGACCTTTAACGACGCTTTTAC-ACAAACGCCGCTAAA
1 TGGCCTTTAGCGACGCTTTTACTACAAACGCCGCTAAA
7291040 AACATGCTTT
Statistics
Matches: 177, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
42 35 0.20
43 110 0.62
44 32 0.18
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
TGGCCTTTAGCGACGCTTTTACTACAAACGCCGCTAAAGATCA
Found at i:7290966 original size:129 final size:128
Alignment explanation
Indices: 7290791--7291039 Score: 304
Period size: 129 Copynumber: 1.9 Consensus size: 128
7290781 TGGGCGGTGG
* * * *
7290791 CCTTTAGCGGCGCTTTTACACAAACGCCGCTAAAGATCGTGGCCTTTAGCGACGC-TTCTACTAC
1 CCTTTAGCGGCGCTTTTACACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTCTACCAC
* ** * *
7290855 AAACGCTGCTAAAGAT-CATGGTCTTTAGCGACGCTTTTATTAAAAACGCCGCTAAAGATCATAA
66 AAACGCCGCTAAA-ATCCATGACCTTTAACGACGCTTTTA-CAAAAACGCCGCTAAAGATCATAA
* * * * * * *
7290919 CCTTTAGCGGCGCTTTTGTCACAAATGCCGCTAAAAATTATGACCTTTAGCGGCGCTTTTTGCCG
1 CCTTTAGCGGCGCTTTT-ACACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTCTACCA
*
7290984 CAAACGCCGCTAAAATCCATGACCTTTAACGACGCTTTTACACAAACGCCGCTAAA
65 CAAACGCCGCTAAAATCCATGACCTTTAACGACGCTTTTACAAAAACGCCGCTAAA
7291040 AACATGCTTT
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
128 17 0.17
129 47 0.47
130 37 0.37
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (128 bp):
CCTTTAGCGGCGCTTTTACACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTCTACCAC
AAACGCCGCTAAAATCCATGACCTTTAACGACGCTTTTACAAAAACGCCGCTAAAGATCATAA
Found at i:7291153 original size:5 final size:5
Alignment explanation
Indices: 7291143--7291167 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7291133 TAAAGATAAA
7291143 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
7291168 TTCTATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:7293559 original size:21 final size:21
Alignment explanation
Indices: 7293533--7293583 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
7293523 CAATAAGTCA
7293533 AATTTGAAAATTTAAATCGCC
1 AATTTGAAAATTTAAATCGCC
7293554 AATTTGAAAATTTAAATCGCC
1 AATTTGAAAATTTAAATCGCC
7293575 AATTTGAAA
1 AATTTGAAA
7293584 GCAATAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (21 bp):
AATTTGAAAATTTAAATCGCC
Found at i:7296411 original size:32 final size:33
Alignment explanation
Indices: 7296357--7296431 Score: 102
Period size: 32 Copynumber: 2.3 Consensus size: 33
7296347 AATTAATCTA
*
7296357 AATCCT-AAACCCTAACCCGACCCTAAATCCCT
1 AATCCTCAAACCCTAACCCGACCCCAAATCCCT
*
7296389 AATCCTCAAACCCTAA-CTGACCCCAAATCCCT
1 AATCCTCAAACCCTAACCCGACCCCAAATCCCT
7296421 AA-CCTCTAAAC
1 AATCCTC-AAAC
7296432 ATTATTTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
31 4 0.10
32 26 0.67
33 9 0.23
ACGTcount: A:0.36, C:0.43, G:0.03, T:0.19
Consensus pattern (33 bp):
AATCCTCAAACCCTAACCCGACCCCAAATCCCT
Found at i:7297301 original size:41 final size:41
Alignment explanation
Indices: 7297244--7297524 Score: 422
Period size: 41 Copynumber: 6.9 Consensus size: 41
7297234 ATTTATTATT
7297244 ATTAGCGGCGCATT-TTCAAAAACGCCGCTAAAGGCCTGAGC
1 ATTAGCGGCGC-TTCTTCAAAAACGCCGCTAAAGGCCTGAGC
* *
7297285 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCGGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
7297326 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
* * *
7297367 ATTAGCGGCGCTACATAAAAAACGCCGCTAAAGGCCTGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
* * *
7297408 ATTAGCGGCGCTTCTCCAAAAATGCCGCTGAAGGCCTGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
* **
7297449 ATTAGGGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCAAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
* *
7297490 ATTAGCGACGCTTTTTCAAAAA-GCCGCTAAAGGCC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCC
7297525 CCCAAAACTC
Statistics
Matches: 218, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
40 15 0.07
41 203 0.93
ACGTcount: A:0.29, C:0.28, G:0.25, T:0.19
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCTGAGC
Found at i:7297691 original size:40 final size:38
Alignment explanation
Indices: 7297561--7297695 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 38
7297551 GGGCTTAGGC
7297561 TTTTTATGGCGCTTTTTGAAAAA-CGCCGCTAATGCTT-A
1 TTTTTATGGCG-TTTTT-AAAAAGCGCCGCTAATGCTTGA
* * *
7297599 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTA-TGGCGTTTT-TAAAAAGCGCCGCTAATGCTTGA
** * *
7297639 CCTTTATCGGCGTTTTTATAAAAGTGCCGCTAATACTTGA
1 TTTTTAT-GGCGTTTTTA-AAAAGCGCCGCTAATGCTTGA
7297679 TTTTTAGTGGCGTTTTT
1 TTTTTA-TGGCGTTTTT
7297696 TATCCAAGCG
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
38 15 0.19
39 18 0.23
40 44 0.56
41 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.39
Consensus pattern (38 bp):
TTTTTATGGCGTTTTTAAAAAGCGCCGCTAATGCTTGA
Found at i:7299232 original size:20 final size:19
Alignment explanation
Indices: 7299209--7299251 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7299199 TTAGGTTTTT
*
7299209 TTTTGCAGTTTTTAATGAAA
1 TTTTACAGTTTTTAA-GAAA
* *
7299229 TTTTATATTTTTTAAGAAA
1 TTTTACAGTTTTTAAGAAA
7299248 TTTT
1 TTTT
7299252 TACATTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.58
Consensus pattern (19 bp):
TTTTACAGTTTTTAAGAAA
Found at i:7299282 original size:16 final size:17
Alignment explanation
Indices: 7299256--7299290 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7299246 AATTTTTACA
*
7299256 TTAATTTTTTTACTAAT
1 TTAATTTTTTTAATAAT
7299273 TTAA-TTTTTTAATAAT
1 TTAATTTTTTTAATAAT
7299289 TT
1 TT
7299291 CATAATAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TTAATTTTTTTAATAAT
Found at i:7299338 original size:17 final size:17
Alignment explanation
Indices: 7299300--7299346 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
7299290 TCATAATAGA
*
7299300 TTATGAATTTGTTAGTTG
1 TTAT-AATTTTTTAGTTG
7299318 TTATAATTTTTTAAGTT-
1 TTATAATTTTTT-AGTTG
*
7299335 TTATGATTTTTT
1 TTATAATTTTTT
7299347 GAAGGATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.64
Consensus pattern (17 bp):
TTATAATTTTTTAGTTG
Found at i:7300725 original size:246 final size:247
Alignment explanation
Indices: 7300276--7300765 Score: 732
Period size: 246 Copynumber: 2.0 Consensus size: 247
7300266 AATGGCAAAC
* * *
7300276 CTCTCATCTATGTCAAGTAAGTGGTTTTGATTGTTCAAGCTTGTAAGATCTTAGGCTCTCAAGTG
1 CTCTCACCTATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCAGGCTCTCAAGTG
* * * * * * *
7300341 TCTTAGCTCATAGCGTGATCTTGGTCAAAAAAGCTAACTAGCAAGGCATGAGCTTGCAAGGTGGC
66 TCTTAGCTCACAACATAATCTTGGTCAAAAAAGCTAACCAACAAGGCATGAGCTCGCAAGGTGGC
* * *
7300406 TCACAATTGTAACAACTCAATTTTTAGTAGTACTGAAAAAGGATATTTTTGAACCTTATTTCTGT
131 TCACAATTGTAACAACTCAATTTTTAGTAGTACTGAAAAAGGAGATTTTGGAACCTCATTTCTGT
*
7300471 AACCGAGTCCGTAAATATTAAATATGAATATTTACGAGGTTAATATAAAGAT
196 AACCGAGTCCATAAATATTAAATATGAATATTTACGAGGTTAATATAAAGAT
*
7300523 CTCTCACCTATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCGGGCTCTCAAGTG
1 CTCTCACCTATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCAGGCTCTCAAGTG
* * *
7300588 TCTTAGCTTACAACATAATCTTGGT-AAAAGAGCTAACCAACAAGGTATGAGCTCGCAAGGTGGC
66 TCTTAGCTCACAACATAATCTTGGTCAAAAAAGCTAACCAACAAGGCATGAGCTCGCAAGGTGGC
* * * * *
7300652 TCACAATTGTAACAGCTCGATTTTTAGTAGTACCT-AAAAAGGCGGTTTTGGAACCTCATTTTTG
131 TCACAATTGTAACAACTCAATTTTTAGTAGTA-CTGAAAAAGGAGATTTTGGAACCTCATTTCTG
* *
7300716 TAACCGAGTCCATAAATATTAAATATGAATATTTATGGGGTTAATATAAA
195 TAACCGAGTCCATAAATATTAAATATGAATATTTACGAGGTTAATATAAA
7300766 TGTATATAGA
Statistics
Matches: 217, Mismatches: 25, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
246 134 0.62
247 83 0.38
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (247 bp):
CTCTCACCTATGTCAAGTAAGTGGTTTTGATCGTTCAAGCTTGTAAGATCTCAGGCTCTCAAGTG
TCTTAGCTCACAACATAATCTTGGTCAAAAAAGCTAACCAACAAGGCATGAGCTCGCAAGGTGGC
TCACAATTGTAACAACTCAATTTTTAGTAGTACTGAAAAAGGAGATTTTGGAACCTCATTTCTGT
AACCGAGTCCATAAATATTAAATATGAATATTTACGAGGTTAATATAAAGAT
Found at i:7308552 original size:27 final size:25
Alignment explanation
Indices: 7308501--7308552 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
7308491 GAACCAACGA
*
7308501 ATTTTATAAAAACAATACCATTATT
1 ATTTTATAAAAACAATACCACTATT
* *
7308526 ATTTTATACAAAAGAATATCACCTATT
1 ATTTTATA-AAAACAATACCA-CTATT
7308553 TTATTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 8 0.36
26 10 0.45
27 4 0.18
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTTTATAAAAACAATACCACTATT
Found at i:7312046 original size:63 final size:63
Alignment explanation
Indices: 7311979--7312184 Score: 157
Period size: 63 Copynumber: 3.1 Consensus size: 63
7311969 AAATCTTGCT
7311979 AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
1 AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
* * * * * * *
7312042 AATTTACGATTGCAA--CTCCACTTAAATAATTCACTGATTTACTACCACAACTATCATTTTCAA
1 AATTTACGA-T-CAAGGCTTCAGTTAATTGATTTAC-GA-TCA-TA--AAAACT-TCA--TT-AA
* *
7312105 -AGCTCGCT
55 GAGTTCGCC
* * ** * *
7312113 AATTTACAATCACGGCTTCAGTTCTTTGATTTACGATCATAAACACTTCATTAAGAGTTCACC
1 AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
7312176 AATTTACGA
1 AATTTACGA
7312185 GCACAACTCC
Statistics
Matches: 104, Mismatches: 25, Indels: 28
0.66 0.16 0.18
Matches are distributed among these distances:
62 2 0.02
63 38 0.37
64 3 0.03
65 8 0.08
66 6 0.06
68 7 0.07
69 7 0.07
70 3 0.03
71 28 0.27
72 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (63 bp):
AATTTACGATCAAGGCTTCAGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCC
Found at i:7312047 original size:134 final size:134
Alignment explanation
Indices: 7311799--7312295 Score: 557
Period size: 134 Copynumber: 3.7 Consensus size: 134
7311789 TACAAATCTC
* * ** * *
7311799 ACAGTTCGCTGATTTACGATCACAATTGTCATTTTTTAAGCTCGCCGATTTACGAACACGGCTTA
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * * * *
7311864 AGTTCATTGATTTACGATCATAAACAGTACATTAAGAGTTTGTCGATTTACGGTCGCAACTCCAC
66 AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACGGTCGCAACTCCAC
7311929 TTAA
131 TTAA
* * * * *
7311933 ACAGGTCGCTGATTTACGATCACAATTGTCATTTTTAAATCTTGCTAATTTACGATCAAGGCTTC
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * * *
7311998 AGTTAATTGATTTACGATCATAAAAACTTCATTAAGAGTTCGCCAATTTACGATTGCAACTCCAC
66 AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACGGTCGCAACTCCAC
7312063 TTAA
131 TTAA
* * * * * * * *
7312067 ATAATTCACTGATTTACTACCACAACTATCATTTTCAAAGCTCGCTAATTTACAATCACGGCTTC
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * *
7312132 AGTTCTTTGATTTACGATCATAAACACTTCATTAAGAGTTCACCAATTTACGAG-CACAACTCCG
66 AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACG-GTCGCAACTCC-
*
7312196 A-TTAG
129 ACTTAA
* * * * * * * * * *
7312201 ATAGTTCGTTGATTTACGATCACAACTGTCATTTGTAAAACTCGTTGATTTCCAATCACGACTTT
1 ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
* * *
7312266 AGTTCATTGATTTATGATCTTGAACACTTC
66 AGTTCATTGATTTACGATCATAAACACTTC
7312296 TTAGTTCATA
Statistics
Matches: 304, Mismatches: 57, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
134 303 1.00
135 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (134 bp):
ACAGTTCGCTGATTTACGATCACAACTGTCATTTTTAAAGCTCGCTAATTTACGATCACGGCTTC
AGTTCATTGATTTACGATCATAAACACTTCATTAAGAGTTCGCCAATTTACGGTCGCAACTCCAC
TTAA
Found at i:7313476 original size:134 final size:134
Alignment explanation
Indices: 7313195--7313494 Score: 313
Period size: 134 Copynumber: 2.2 Consensus size: 134
7313185 TAATCAAAGA
* * * *
7313195 TTTAGTTCATTGATTTACAATCATGAAAACTTTATTATGAGTTCACTGATTTACGATCACAACTC
1 TTTAGTTCATTGATTTACGATCATGAAAACTTTATTAAGAGTTCACTGATTTACAATCACAACGC
* ** *
7313260 CATTTAAACACTTCGTTGATTTACGATCACAACTTTCATTTTCAAAGCTCGATAATTTACAATAA
66 CATTTAAACAATTCACTGATTTACAATCACAACTTTCATTTTCAAAGCTCGATAATTTACAATAA
*
7313325 CGGC
131 CGAC
* * * * * * *
7313329 TTCAATTCTTTGATTTACGATCATGAATATTTTATTAAGAGTTC-GTCGATTTACAATCGCAACG
1 TTTAGTTCATTGATTTACGATCATGAAAACTTTATTAAGAGTTCACT-GATTTACAATCACAACG
* * *
7313393 CCGA-TTAAACAATTCACTGATTTACAATCACAA-TTGTCATCTTT-AAAGCT-TACTGATTTCC
65 CC-ATTTAAACAATTCACTGATTTACAATCACAACTT-TCAT-TTTCAAAGCTCGA-TAATTTAC
* *
7313454 AATCATGAC
126 AATAACGAC
* *
7313463 TTTAGTTCATTGATTTACGATCTTGAACACTT
1 TTTAGTTCATTGATTTACGATCATGAAAACTT
7313495 CTTGTTTCAC
Statistics
Matches: 134, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
133 4 0.03
134 126 0.94
135 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (134 bp):
TTTAGTTCATTGATTTACGATCATGAAAACTTTATTAAGAGTTCACTGATTTACAATCACAACGC
CATTTAAACAATTCACTGATTTACAATCACAACTTTCATTTTCAAAGCTCGATAATTTACAATAA
CGAC
Found at i:7313605 original size:16 final size:18
Alignment explanation
Indices: 7313569--7313634 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 18
7313559 TAAAATGTTT
*
7313569 TTTAAAAAATATATTATAA
1 TTTAAAAAATATA-TAAAA
7313588 -TTAAAAAATATA-AAAA
1 TTTAAAAAATATATAAAA
*
7313604 TTTAAAATAAATATGTAAAAA
1 TTT-AAA-AAATATAT-AAAA
7313625 TTTATAAAAA
1 TTTA-AAAAA
7313635 AAATTTTTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
16 3 0.08
17 2 0.05
18 15 0.38
19 6 0.15
20 4 0.10
21 9 0.23
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
TTTAAAAAATATATAAAA
Found at i:7314509 original size:18 final size:18
Alignment explanation
Indices: 7314473--7314506 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7314463 GTGTTTTAAT
*
7314473 ATAATTTTTAATATTTTA
1 ATAATTTATAATATTTTA
7314491 ATAATTTAT-ATATTTT
1 ATAATTTATAATATTTT
7314507 TAAAGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATAATTTATAATATTTTA
Found at i:7321526 original size:44 final size:46
Alignment explanation
Indices: 7321461--7321589 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 46
7321451 ATGCACTAAT
* * *
7321461 GAACAGAGAGCACTAAAGTGCTATA-CAGAGAGCA-CAGATGTGCTA
1 GAACAGAGAGCACTAACGTGCTAAATCAGAGAGCACCA-ACGTGCTA
*
7321506 -AACAGAGAGCACTGACGTGCTAAAATCAGAGAGCACCAACGTGCTA
1 GAACAGAGAGCACTAACGTGCT-AAATCAGAGAGCACCAACGTGCTA
*
7321552 GTAGTCAGAGAGCACTAACGTGCTAATAATCAGAGAGC
1 G-A-ACAGAGAGCACTAACGTGCT-A-AATCAGAGAGC
7321590 GCGCTAAAGT
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
44 19 0.27
45 2 0.03
46 16 0.23
47 2 0.03
48 1 0.01
49 20 0.28
50 11 0.15
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.16
Consensus pattern (46 bp):
GAACAGAGAGCACTAACGTGCTAAATCAGAGAGCACCAACGTGCTA
Found at i:7321565 original size:25 final size:24
Alignment explanation
Indices: 7321464--7321589 Score: 136
Period size: 22 Copynumber: 5.3 Consensus size: 24
7321454 CACTAATGAA
*
7321464 CAGAGAGCACTAAAGTGCTAT-A-
1 CAGAGAGCACTAACGTGCTATAAT
*
7321486 CAGAGAGCAC-AGATGTGCTA-AA-
1 CAGAGAGCACTA-ACGTGCTATAAT
* *
7321508 CAGAGAGCACTGACGTGCTAAAAT
1 CAGAGAGCACTAACGTGCTATAAT
* *
7321532 CAGAGAGCACCAACGTGCTAGTAGT
1 CAGAGAGCACTAACGTGCTA-TAAT
7321557 CAGAGAGCACTAACGTGCTAATAAT
1 CAGAGAGCACTAACGTGCT-ATAAT
7321582 CAGAGAGC
1 CAGAGAGC
7321590 GCGCTAAAGT
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
21 1 0.01
22 35 0.40
23 2 0.02
24 18 0.20
25 31 0.35
26 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (24 bp):
CAGAGAGCACTAACGTGCTATAAT
Found at i:7322717 original size:20 final size:20
Alignment explanation
Indices: 7322686--7322750 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
7322676 ATATATATAA
7322686 TAATAATATAATATAATAACT
1 TAAT-ATATAATATAATAACT
* *
7322707 TACT-TATTAAT-TAAATAACA
1 TAATATA-TAATAT-AATAACT
7322727 TAATATATAATATATATAACT
1 TAATATATAATATA-ATAACT
7322748 TAA
1 TAA
7322751 ATTAAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
19 3 0.09
20 18 0.51
21 14 0.40
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATATATAATATAATAACT
Found at i:7325898 original size:42 final size:42
Alignment explanation
Indices: 7325838--7326244 Score: 444
Period size: 42 Copynumber: 9.7 Consensus size: 42
7325828 TCGAAAGCTG
* * * *
7325838 AACAGAAGCTCATGAGAGCTAAACAGAAAC-CTATAA-AGGTTG
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTC-ATAAGA-GTTA
* * * * *
7325880 AACAGAAGCTCTTAAGAGCTTAACGGAAACCCATAAGGGCTA
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* * *
7325922 AACAGAAGCTCAAAAGAGCTGAACGGAAATTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* * *
7325964 AACAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* * * *
7326006 AACAGAAGCTCATGAGAGCTAAACAGAAAC-CTATAA-AGGTTG
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTC-ATAAGA-GTTA
* * * * *
7326048 AACAGAAGCTCTTAAGAGCTTAACGGAAACCCATAAGGGCTA
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* *
7326090 AACAGAAGCTCAAAAGAGCTGAACGGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* * *
7326132 AACAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* * *
7326174 AACAGAAGCTCAAAAGAGCTGAATGGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
* *
7326216 AACAGAAGCTCGTAAGAGCTAAACGGAAA
1 AACAGAAGCTCATAAGAGCTGAACGGAAA
7326245 GTAAAACACG
Statistics
Matches: 306, Mismatches: 53, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
41 2 0.01
42 302 0.99
43 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTGAACGGAAACTCATAAGAGTTA
Found at i:7326114 original size:168 final size:168
Alignment explanation
Indices: 7325836--7326244 Score: 696
Period size: 168 Copynumber: 2.4 Consensus size: 168
7325826 GCTCGAAAGC
7325836 TGAACAGAAGCTCATGAGAGCTAAACAGAAACCTATAAAGGTTGAACAGAAGCTCTTAAGAGCTT
1 TGAACAGAAGCTCATGAGAGCTAAACAGAAACCTATAAAGGTTGAACAGAAGCTCTTAAGAGCTT
*
7325901 AACGGAAACCCATAAGGGCTAAACAGAAGCTCAAAAGAGCTGAACGGAAATTCATATGAGTTAAA
66 AACGGAAACCCATAAGGGCTAAACAGAAGCTCAAAAGAGCTGAACGGAAACTCATATGAGTTAAA
7325966 CAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGT
131 CAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGT
7326004 TGAACAGAAGCTCATGAGAGCTAAACAGAAACCTATAAAGGTTGAACAGAAGCTCTTAAGAGCTT
1 TGAACAGAAGCTCATGAGAGCTAAACAGAAACCTATAAAGGTTGAACAGAAGCTCTTAAGAGCTT
7326069 AACGGAAACCCATAAGGGCTAAACAGAAGCTCAAAAGAGCTGAACGGAAACTCATATGAGTTAAA
66 AACGGAAACCCATAAGGGCTAAACAGAAGCTCAAAAGAGCTGAACGGAAACTCATATGAGTTAAA
7326134 CAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGT
131 CAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGT
** * ** * * *
7326172 TGAACAGAAGCTCAAAAGAGCTGAATGGAAA-CTCAT-ATGAGTTAAACAGAAGCTCGTAAGAGC
1 TGAACAGAAGCTCATGAGAGCTAAACAGAAACCT-ATAAAG-GTTGAACAGAAGCTCTTAAGAGC
*
7326235 TAAACGGAAA
64 TTAACGGAAA
7326245 GTAAAACACG
Statistics
Matches: 229, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
167 4 0.02
168 225 0.98
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.17
Consensus pattern (168 bp):
TGAACAGAAGCTCATGAGAGCTAAACAGAAACCTATAAAGGTTGAACAGAAGCTCTTAAGAGCTT
AACGGAAACCCATAAGGGCTAAACAGAAGCTCAAAAGAGCTGAACGGAAACTCATATGAGTTAAA
CAGAAGCTCATAAGAGATGAACAGAAACTCATAAGAGT
Found at i:7328690 original size:22 final size:24
Alignment explanation
Indices: 7328664--7328707 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7328654 GAAAAATATT
7328664 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
7328686 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
7328708 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:7328837 original size:59 final size:59
Alignment explanation
Indices: 7328774--7328943 Score: 313
Period size: 59 Copynumber: 2.9 Consensus size: 59
7328764 TCAAGTTTGT
*
7328774 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
*
7328833 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTATTAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
*
7328892 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATT
7328944 AATAATTTGA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 107 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.41
Consensus pattern (59 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
Found at i:7328975 original size:16 final size:16
Alignment explanation
Indices: 7328954--7328995 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7328944 AATAATTTGA
*
7328954 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
7328970 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
7328986 TAGTTTTAAT
1 TAATTTTAAT
7328996 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:7331248 original size:17 final size:16
Alignment explanation
Indices: 7331228--7331282 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
7331218 AGAGAGAAGC
*
7331228 AAAAGAGAATAAAAAG
1 AAAAAAGAATAAAAAG
*
7331244 AAAAAAAGAAAAAAAAG
1 -AAAAAAGAATAAAAAG
**
7331261 TTAAAAGAATATAAAAG
1 AAAAAAGAATA-AAAAG
7331278 AAAAA
1 AAAAA
7331283 TTTTAAATTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
16 8 0.27
17 22 0.73
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (16 bp):
AAAAAAGAATAAAAAG
Found at i:7343942 original size:60 final size:61
Alignment explanation
Indices: 7343868--7343993 Score: 152
Period size: 60 Copynumber: 2.1 Consensus size: 61
7343858 AATCAAATTC
*
7343868 AGGTATCAATTTGAACC-AAGAAGCCAAGTTC-AGATACCTAATTGGACCAAA-ATAAACT-TT
1 AGGTATCAAATTGAACCTAA-AAGCCAAGTTCAAG-TACCTAATTGGACCAAAGA-AAACTCTT
* * * *
7343928 AGGTATTAAATTGAACCTTAAAGTCAAGTTCAAGTACCTAATTGGACTAAAGAAAACTCTT
1 AGGTATCAAATTGAACCTAAAAGCCAAGTTCAAGTACCTAATTGGACCAAAGAAAACTCTT
7343989 AGGTA
1 AGGTA
7343994 CCAATATGCA
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
60 46 0.81
61 11 0.19
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (61 bp):
AGGTATCAAATTGAACCTAAAAGCCAAGTTCAAGTACCTAATTGGACCAAAGAAAACTCTT
Found at i:7345989 original size:12 final size:11
Alignment explanation
Indices: 7345968--7346024 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 11
7345958 CACAAAATGT
7345968 TTTTTATTTTA
1 TTTTTATTTTA
7345979 TTTTTATTTTTA
1 TTTTTA-TTTTA
7345991 TCGTTATTATTTTA
1 T--TT-TTATTTTA
7346005 TTTTTAATTTT-
1 TTTTT-ATTTTA
7346016 TTTATTATT
1 TTT-TTATT
7346025 CTCGTTGTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
11 14 0.35
12 15 0.38
14 8 0.20
15 3 0.08
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:7346023 original size:26 final size:26
Alignment explanation
Indices: 7345971--7346024 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
7345961 AAAATGTTTT
*
7345971 TTATTTTATTTTTATTTTTATCGTTA
1 TTATTTTATTTTTATTTTTATCATTA
*
7345997 TTATTTTATTTTTAATTTTT-TTATTA
1 TTATTTTATTTTT-ATTTTTATCATTA
7346023 TT
1 TT
7346025 CTCGTTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (26 bp):
TTATTTTATTTTTATTTTTATCATTA
Found at i:7348563 original size:18 final size:17
Alignment explanation
Indices: 7348538--7348580 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
7348528 AGTGCTTTAA
*
7348538 ATTT-TTTTATTTGTTT
1 ATTTCTTTTATTTGTTG
7348554 ATTTACTTTTATTTGTTG
1 ATTT-CTTTTATTTGTTG
7348572 ATTTCTTTT
1 ATTTCTTTT
7348581 CATTATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 5 0.21
18 15 0.62
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.74
Consensus pattern (17 bp):
ATTTCTTTTATTTGTTG
Found at i:7349074 original size:219 final size:218
Alignment explanation
Indices: 7348690--7349170 Score: 809
Period size: 219 Copynumber: 2.2 Consensus size: 218
7348680 TCAAAAACGA
* * *
7348690 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGAAAATTCGAGAAAATATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
* * * * *
7348755 GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTTAGAAATTTTAAAATAAGGTAA
66 GGTGTCAATTTTTCTCGTTCAACCAAATGACTAAATATCCTTTAAAAAATTTTAAAATAAGGCAA
*
7348820 TGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCA
131 TGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCA
*
7348885 ACCAAATGGCTTAATATCCTTTT
196 ACCAAATGGCTAAATATCCTTTT
* *
7348908 AAAAATTTTAAAATAAGACAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCTCTAAGGTGCT
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCT
*
7348973 GGGTGTCAATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTAAAAAATTTTAAAATAAGGCA
65 GGGTGTCAATTTTTCTCGTTCAACCAAATGACTAAATATCCTTTAAAAAATTTTAAAATAAGGCA
* *
7349038 ATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTGTCGATTTTTCTCATTC
130 ATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTC
7349103 AACCAAATGGCTAAATATCCTTTT
195 AACCAAATGGCTAAATATCCTTTT
*
7349127 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG
7349171 GAACGTGCCA
Statistics
Matches: 245, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
218 42 0.17
219 203 0.83
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35
Consensus pattern (218 bp):
AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCAATTTTTCTCGTTCAACCAAATGACTAAATATCCTTTAAAAAATTTTAAAATAAGGCAA
TGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCA
ACCAAATGGCTAAATATCCTTTT
Found at i:7349204 original size:109 final size:109
Alignment explanation
Indices: 7348690--7349203 Score: 814
Period size: 109 Copynumber: 4.7 Consensus size: 109
7348680 TCAAAAACGA
* * *
7348690 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGAAAATTCGAGAAAATATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
* *
7348755 GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATATCCTTTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* *
7348799 AGAAATTTTAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
7348864 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* *
7348908 AAAAATTTTAAAATAAGACAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCTCTAAGGTGCT
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCT
* *
7348973 GGGTGTCAATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTA
65 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* *
7349018 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
7349083 GGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* * * * **
7349127 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCATAATATGCTG
1 AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
7349191 GGTTTCGATTTTT
66 GGTGTCGATTTTT
7349204 TGATTGACCG
Statistics
Matches: 379, Mismatches: 25, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
108 29 0.08
109 246 0.65
110 104 0.27
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (109 bp):
AAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
Found at i:7350928 original size:24 final size:24
Alignment explanation
Indices: 7350901--7350951 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7350891 AAAGAGTCTA
*
7350901 TAACGGGTAGCTCCAAAAAGCAAT
1 TAACAGGTAGCTCCAAAAAGCAAT
* *
7350925 TAACAGGTAGCTCTAAAGAGCAAT
1 TAACAGGTAGCTCCAAAAAGCAAT
7350949 TAA
1 TAA
7350952 TATGAAGCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.20
Consensus pattern (24 bp):
TAACAGGTAGCTCCAAAAAGCAAT
Found at i:7351055 original size:26 final size:26
Alignment explanation
Indices: 7351004--7351062 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
7350994 CACTAACGGG
* * * *
7351004 AAGCTCACAAAGAGCCTTTAATCAGA
1 AAGCTCACAAAGAGACATAAAACAGA
7351030 AAGCTCACAAAGAGACATAAAACAGA
1 AAGCTCACAAAGAGACATAAAACAGA
*
7351056 ACGCTCA
1 AAGCTCA
7351063 TAAGAGCTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.47, C:0.24, G:0.15, T:0.14
Consensus pattern (26 bp):
AAGCTCACAAAGAGACATAAAACAGA
Found at i:7351406 original size:13 final size:13
Alignment explanation
Indices: 7351388--7351412 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7351378 TAAAGTATTT
7351388 TAAAATTAAAAAA
1 TAAAATTAAAAAA
7351401 TAAAATTAAAAA
1 TAAAATTAAAAA
7351413 TATATATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAATTAAAAAA
Found at i:7353103 original size:18 final size:18
Alignment explanation
Indices: 7353080--7353116 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7353070 TCAATCTAAA
*
7353080 ACCAAACCAAGGCATACC
1 ACCAAACCAACGCATACC
7353098 ACCAAACCAACGCATACC
1 ACCAAACCAACGCATACC
7353116 A
1 A
7353117 AAGTATCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.41, G:0.08, T:0.05
Consensus pattern (18 bp):
ACCAAACCAACGCATACC
Found at i:7354297 original size:43 final size:42
Alignment explanation
Indices: 7354127--7354333 Score: 215
Period size: 42 Copynumber: 4.9 Consensus size: 42
7354117 AACTCGCACA
* * * * * *
7354127 ATGCC-ATATCCCAGATATGGTCGTACATGCTATCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACATATCG
* *
7354169 ATGCCAATAG--CCAG-CTATGGTCTTACACGAATCTCATATCA
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAATCACATATCG
***
7354210 ATGCCAATGTCCCAGACATGGTCTTACACGAATCTTGTATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATCG
* * *
7354252 ATGCCAATGTCCCAGACATGGGTTTTACATGAATCACATAACG
1 ATGCCAATGTCCCAGACAT-GGTCTTACACGAATCACATATCG
7354295 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAT
7354334 CTCAGTATCC
Statistics
Matches: 138, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
40 1 0.01
41 16 0.12
42 74 0.54
43 47 0.34
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCACATATCG
Found at i:7361200 original size:91 final size:91
Alignment explanation
Indices: 7361045--7361228 Score: 332
Period size: 91 Copynumber: 2.0 Consensus size: 91
7361035 TTAATGGAAA
7361045 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTAAAAGGTTTTCTAAATAGTACAAGGAC
1 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTAAAAGGTTTTCTAAATAGTACAAGGAC
7361110 CTAAAACAAGACCACTAGTCAGAACT
66 CTAAAACAAGACCACTAGTCAGAACT
* **
7361136 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTGAAAGGTTTTCTAAATAGTGTAAGGAC
1 AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTAAAAGGTTTTCTAAATAGTACAAGGAC
*
7361201 CTGAAACAAGACCACTAGTCAGAACT
66 CTAAAACAAGACCACTAGTCAGAACT
7361227 AA
1 AA
7361229 CCAAATTTAA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (91 bp):
AATAATATTCAAGTAAAAGGATTTCTGCATATTGCTCTAAAAGGTTTTCTAAATAGTACAAGGAC
CTAAAACAAGACCACTAGTCAGAACT
Found at i:7361763 original size:88 final size:85
Alignment explanation
Indices: 7361612--7362199 Score: 243
Period size: 96 Copynumber: 6.4 Consensus size: 85
7361602 CATCGTGGCG
* * * * *
7361612 AATCTTATCTCCCTGAAGTTACAGTAGAGTAGATTAAA-GCCACAAGTCTCATTTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATG-C-GAA-TCTTATTTCCCTGAAGTT
*
7361676 ACAGTGAAGCATATTGAAGTTAC
63 GCAGTGAAGCATATTGAAGTTAC
*
7361699 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTCAATATGCGAATCTTATTTCCGTGAAGTT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-ATGCGAATCTTATTTCCCTGAAGTT
* * *
7361764 GTAGTGGAA-CAGATTAAAGCTGCAGGTTAC
63 GCAGT-GAAGC--A-T--A-TTG-AAGTTAC
* * * * * *
7361794 AAATCTTATCTCCCTGAGGTTGTAGTGGAGCAAATTAAAGATAGCGAATCTTATTTTCTTGAAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-AT-GCGAATCTTATTTCCCTGAAGT
* * * *
7361859 TGCAGTGGAGCAGATTAAAGATAAC
62 TGCAGTGAAGCATATTGAAG-TTAC
* * * * *
7361884 GAATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGTTACAAGTTACAAATCTTATCTCCC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--T----G---CGAATCTTATTTCCC
* * * *
7361949 TGAAGTTGAAGTGGAGCAGATTGAAGATAGC
56 TGAAGTTGCAGTGAAGCATATTGAAGTTA-C
* * * * *
7361980 AAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAATTCTTATCTCCC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--TGC--G----AA-TCTTATTTCCC
* * * * *
7362045 TGAACG-TGCAATGGAGCAGATTAAAG--CC
56 TGAA-GTTGCAGTGAAGCATATTGAAGTTAC
* * * * * *
7362073 AACCTTATCTCCTTGAAGTTGCAGTGGAGCTAG-TTAAAGCTACAAATCTTATCTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTAAA--TGCGAATCTTATTTCCCTGAAGTT
* * * *
7362137 GTAGTGGAGCAGATTGAAGATAGC
63 GCAGTGAAGCATATTGAAGTTA-C
* * * *
7362161 AAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
7362200 GCTACAAGTT
Statistics
Matches: 393, Mismatches: 68, Indels: 78
0.73 0.13 0.14
Matches are distributed among these distances:
84 1 0.00
85 31 0.08
86 2 0.01
87 2 0.01
88 54 0.14
89 41 0.10
90 37 0.09
91 3 0.01
92 35 0.09
93 6 0.02
94 3 0.01
95 45 0.11
96 132 0.34
97 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (85 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATGCGAATCTTATTTCCCTGAAGTTGCA
GTGAAGCATATTGAAGTTAC
Found at i:7361807 original size:95 final size:96
Alignment explanation
Indices: 7361694--7361878 Score: 264
Period size: 95 Copynumber: 1.9 Consensus size: 96
7361684 GCATATTGAA
* * * *
7361694 GTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTCAATAT-GCGAATCTTATTTCCGT
1 GTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGATAGCGAATCTTATTTCCGT
* *
7361758 GAAGTTGTAGTGGAACAGATTAAAGCTGCAG
66 GAAATTGCAGTGGAACAGATTAAAGCTGCAG
* * * *
7361789 GTTACAAATCTTATCTCCCTGAGGTTGTAGTGGAGCAAATTAAAGATAGCGAATCTTATTTTCTT
1 GTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGATAGCGAATCTTATTTCCGT
*
7361854 GAAATTGCAGTGGAGCAGATTAAAG
66 GAAATTGCAGTGGAACAGATTAAAG
7361879 ATAACGAATC
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
95 41 0.53
96 37 0.47
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (96 bp):
GTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGATAGCGAATCTTATTTCCGT
GAAATTGCAGTGGAACAGATTAAAGCTGCAG
Found at i:7361866 original size:45 final size:45
Alignment explanation
Indices: 7361612--7362469 Score: 449
Period size: 44 Copynumber: 18.6 Consensus size: 45
7361602 CATCGTGGCG
* * * * **
7361612 AATCTTATCTCCCTGAAGTTACAGTAGAGTAGATTAAAGCCA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * * * * * *
7361656 AGTCTCATTTCCCTGAAGTTACAGTGAAGCATATTGAAGTTA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * * * *
7361700 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTCAATAT-GCG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * * *
7361744 AATCTTATTTCCGTGAAGTTGTAGTGGAACAGATTAAAGCTGCAGGTTACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT--A-G---CA
* * * * *
7361795 AATCTTATCTCCCTGAGGTTGTAGTGGAGCAAATTAAAGATAGCG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * * * *
7361840 AATCTTATTTTCTTGAAATTGCAGTGGAGCAGATTAAAGATAACG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * *
7361885 AATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGTTACAAGTTACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-TAG---CA
* * *
7361936 AATCTTATCTCCCTGAAGTTGAAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * *
7361981 AATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-TAG---CA
* * * *
7362032 ATTCTTATCTCCCTGAACG-TGCAATGGAGCAGATT--A-A-AGCC
1 AATCTTATTTCCCTGAA-GTTGCAGTGGAGCAGATTAAAGATAGCA
* * * *
7362073 AACCTTATCTCCTTGAAGTTGCAGTGGAGCTAG-TTAAAGCTA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGC-AGATTAAAGATAGCA
* * * *
7362117 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * * *
7362162 AATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--A-TAG---CA
* * * **
7362213 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCGA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * * * * * *
7362257 AGTCCTA-TACCTCTGAGGTTGCAGTGGATCGGATTAAGTCTACCATAGCA
1 AATCTTATTTCC-CTGAAGTTGCAGTGGAGCAGATTAA----A-GATAGCA
* * *
7362307 AATCTTATTTCCCTAAAGTTGCAGTGGAATAGACTAAAGTTACAAGCTA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGG---AG-C-AGA-TTA-AAGATAGCA
* * ** * * * *
7362358 AATCTTATCTCCCTGAAGTTGCAGCGGAATAGGTTGAATATA-CG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
* * *
7362402 AA---TATCTCCCTGAAGTTGCAGTAGAGTAGATTAAA-ATTA-CA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-TAGCA
* * *
7362443 ATTCTTATATCCCTGAAATTGCAGTGG
1 AATCTTATTTCCCTGAAGTTGCAGTGG
7362470 GTGGGAATGA
Statistics
Matches: 622, Mismatches: 138, Indels: 108
0.72 0.16 0.12
Matches are distributed among these distances:
40 2 0.00
41 59 0.09
42 2 0.00
43 5 0.01
44 190 0.31
45 147 0.24
46 2 0.00
47 3 0.00
48 12 0.02
49 4 0.01
50 20 0.03
51 165 0.27
52 3 0.00
53 2 0.00
54 1 0.00
55 1 0.00
56 3 0.00
57 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (45 bp):
AATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCA
Found at i:7362065 original size:51 final size:51
Alignment explanation
Indices: 7361744--7362380 Score: 277
Period size: 51 Copynumber: 13.5 Consensus size: 51
7361734 TCAATATGCG
* * * * * *
7361744 AATCTTATTTCCGTGAAGTTGTAGTGGAACAGATTAAAGCTGCAGGTTACA
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * * * * * *
7361795 AATCTTATCTCCCTGAGGTTGTAGTGGAGCAAATTAAAG--A-TAG---CG
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * * * * * * *
7361840 AATCTTATTTTCTTGAAATTGCAGTGGAGCAGATTAAAG-----A-TAACG
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* *
7361885 AATCTTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGTTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * *
7361936 AATCTTATCTCCCTGAAGTTG-AAGTGGAGCAGATTGAAG--A-TAG---CA
1 AATCTTATCTCCCTGAAGTTGCAA-TGGAACAGATTAAAGCTACAAGTTACA
* * *
7361981 AATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* *
7362032 ATTCTTATCTCCCTGAACG-TGCAATGGAGCAGATTAAAGC--C-A---AC-
1 AATCTTATCTCCCTGAA-GTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * *
7362076 ---CTTATCTCCTTGAAGTTGCAGTGGAGCTAG-TTAAAG---C----TACA
1 AATCTTATCTCCCTGAAGTTGCAATGGAAC-AGATTAAAGCTACAAGTTACA
* * * * * *
7362117 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG--A-TAG---CA
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * * *
7362162 AATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * * * *
7362213 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCGACAAG-T-C-
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
* * * * * *
7362261 ---C-TATAC-CTCTGAGGTTGCAGTGGATCGGATT-AAGTCTACCA--TAGCA
1 AATCTTAT-CTCCCTGAAGTTGCAATGGAACAGATTAAAG-CTACAAGTTA-CA
* * * * * * *
7362307 AATCTTATTTCCCTAAAGTTGCAGTGGAATAGACTAAAGTTACAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
7362358 AATCTTATCTCCCTGAAGTTGCA
1 AATCTTATCTCCCTGAAGTTGCA
7362381 GCGGAATAGG
Statistics
Matches: 461, Mismatches: 76, Indels: 98
0.73 0.12 0.15
Matches are distributed among these distances:
40 4 0.01
41 29 0.06
42 2 0.00
43 7 0.02
44 56 0.12
45 144 0.31
46 1 0.00
47 2 0.00
48 8 0.02
49 4 0.01
50 29 0.06
51 172 0.37
52 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (51 bp):
AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTAAAGCTACAAGTTACA
Found at i:7362145 original size:181 final size:182
Alignment explanation
Indices: 7361922--7362252 Score: 549
Period size: 181 Copynumber: 1.8 Consensus size: 182
7361912 AACAGATTAA
* *
7361922 AGTTACAAGTTACAAATCTTATCTCCCTGAAGTTGAAGTGGAGCAGATTGAAGATAGCAAATCTT
1 AGTTACAAGCTACAAATCTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGATAGCAAATCTT
* * * *
7361987 ATTTTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTACAATTCTTATCTCCCTGAACG-
66 ATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAA-GT
7362051 TGCAATGGAGCAGATTAAAGCCAACCTTATCTCCTTGAAGTTGCAGTGGAGCT
130 TGCAATGGAGCAGATTAAAGCCAACCTTATCTCCTTGAAGTTGCAGTGGAGCT
*
7362104 AGTTA-AAGCTACAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTT
1 AGTTACAAGCTACAAATCTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGATAGCAAATCTT
*
7362168 ATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCTTGAAGTT
66 ATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTT
* *
7362233 GCAGTGGAGCAGATTGAAGC
131 GCAATGGAGCAGATTAAAGC
7362253 GACAAGTCCT
Statistics
Matches: 138, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
180 1 0.01
181 132 0.96
182 5 0.04
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (182 bp):
AGTTACAAGCTACAAATCTTATCTCCCTAAAGTTGAAGTGGAGCAGATTGAAGATAGCAAATCTT
ATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTT
GCAATGGAGCAGATTAAAGCCAACCTTATCTCCTTGAAGTTGCAGTGGAGCT
Found at i:7362248 original size:96 final size:96
Alignment explanation
Indices: 7361853--7362334 Score: 514
Period size: 96 Copynumber: 5.2 Consensus size: 96
7361843 CTTATTTTCT
* * * * *
7361853 TGAAATTGCAGTGGAGCAGATTAAAGATAACGAATCTTATTTCCCTGAAGTTGCAATGGAACAGA
1 TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
*
7361918 TTAAAGTTACAAGTTACAAATCTTATCTCCC
66 TTAAAGCTACAAGTTACAAATCTTATCTCCC
* *
7361949 TGAAGTTGAAGTGGAGCAGATTGAAGATAGCAAATCTTATTTTCCTGAAGTTGCAGTGGAACAGA
1 TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
*
7362014 TTAAAGCTACAAGTTACAATTCTTATCTCCC
66 TTAAAGCTACAAGTTACAAATCTTATCTCCC
* * * * * *
7362045 TGAACG-TGCAATGGAGCAGATT--A-A-AGCCAACCTTATCTCCTTGAAGTTGCAGTGGAGCTA
1 TGAA-GTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAAC-A
7362105 G-TTAAAG---C----TACAAATCTTATCTCCC
64 GATTAAAGCTACAAGTTACAAATCTTATCTCCC
* * * *
7362130 TAAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTAAAGTTACAGTGGAACAGA
1 TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
*
7362195 TTAAAGCTACAAGTTACAAATCTTATCTCCT
66 TTAAAGCTACAAGTTACAAATCTTATCTCCC
** * * * * * *
7362226 TGAAGTTGCAGTGGAGCAGATTGAAGCGA-CAAGTCCTA-TACCTCTGAGGTTGCAGTGGATCGG
1 TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCC-CTGAAGTTGCAGTGGAACAG
* *
7362289 ATT-AAGTCTACCA--TAGCAAATCTTATTTCCC
65 ATTAAAG-CTACAAGTTA-CAAATCTTATCTCCC
*
7362320 TAAAGTTGCAGTGGA
1 TGAAGTTGCAGTGGA
7362335 ATAGACTAAA
Statistics
Matches: 323, Mismatches: 45, Indels: 38
0.80 0.11 0.09
Matches are distributed among these distances:
84 1 0.00
85 33 0.10
87 1 0.00
88 3 0.01
89 34 0.11
92 35 0.11
93 5 0.02
94 34 0.11
95 30 0.09
96 146 0.45
97 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (96 bp):
TGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGA
TTAAAGCTACAAGTTACAAATCTTATCTCCC
Found at i:7363832 original size:10 final size:10
Alignment explanation
Indices: 7363819--7363843 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7363809 TTATTTTGTT
7363819 TTATTAATTA
1 TTATTAATTA
7363829 TTATTAATTA
1 TTATTAATTA
7363839 TTATT
1 TTATT
7363844 TACAATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTAATTA
Found at i:7364064 original size:39 final size:39
Alignment explanation
Indices: 7364009--7364087 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 39
7363999 TTGTGCATTT
*
7364009 TTATTATTATTGTTATTATCATTATTATT-TTATTTTTAA
1 TTATTATTATTATTATTATCATTATT-TTATTATTTTTAA
* *
7364048 TTATTATTATTATTATTCTCGTTATTTTATTATTTTTAA
1 TTATTATTATTATTATTATCATTATTTTATTATTTTTAA
7364087 T
1 T
7364088 ATCTTCATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.06
39 34 0.94
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.67
Consensus pattern (39 bp):
TTATTATTATTATTATTATCATTATTTTATTATTTTTAA
Found at i:7364073 original size:36 final size:35
Alignment explanation
Indices: 7364005--7364078 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 35
7363995 TTATTTGTGC
* *
7364005 ATTTTTATTATTATTGTTATTATCATTATTATTTT
1 ATTTTTATTATTATTATTATTATCATCATTATTTT
*
7364040 ATTTTTAATTATTATTATTATTATTC-TCGTTATTTT
1 ATTTTT-ATTATTATTATTATTA-TCATCATTATTTT
7364076 ATT
1 ATT
7364079 ATTTTTAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 6 0.18
36 26 0.76
37 2 0.06
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.68
Consensus pattern (35 bp):
ATTTTTATTATTATTATTATTATCATCATTATTTT
Found at i:7364081 original size:3 final size:3
Alignment explanation
Indices: 7364009--7364064 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
7363999 TTGTGCATTT
* * *
7364009 TTA TTA TTA TTG TTA TTA TCA TTA TTA TT- TTA TTT TTAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA
7364054 TTA TTA TTA TT
1 TTA TTA TTA TT
7364065 CTCGTTATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.91
4 2 0.04
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7364223 original size:17 final size:18
Alignment explanation
Indices: 7364200--7364251 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
7364190 TAATATTGTT
7364200 TTCATTATTATAATTACA
1 TTCATTATTATAATTACA
* *
7364218 -TCATTATTATTATTATA
1 TTCATTATTATAATTACA
7364235 TTCTATTATTTATAATT
1 TTC-ATTA-TTATAATT
7364252 TATCATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 15 0.54
18 2 0.07
19 4 0.14
20 7 0.25
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (18 bp):
TTCATTATTATAATTACA
Found at i:7367769 original size:3 final size:3
Alignment explanation
Indices: 7367761--7367787 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7367751 CTAAAATTGG
7367761 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
7367788 TATTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7367902 original size:3 final size:3
Alignment explanation
Indices: 7367889--7367919 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
7367879 AATATATATA
7367889 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
7367920 AGACTTCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7367975 original size:111 final size:111
Alignment explanation
Indices: 7367781--7367998 Score: 418
Period size: 111 Copynumber: 2.0 Consensus size: 111
7367771 ATAATAATAA
*
7367781 TAATAATTATTATTATTATTATTATTGTAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTA
1 TAATAATTATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTA
7367846 ATTATCATCCGAGTGTGTTTAGTTGAAAATCACAATATATATATAT
66 ATTATCATCCGAGTGTGTTTAGTTGAAAATCACAATATATATATAT
*
7367892 TAATTATTATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTA
1 TAATAATTATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTA
7367957 ATTATCATCCGAGTGTGTTTAGTTGAAAATCACAATATATAT
66 ATTATCATCCGAGTGTGTTTAGTTGAAAATCACAATATATAT
7367999 TTTAAAGGTA
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
111 105 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (111 bp):
TAATAATTATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTA
ATTATCATCCGAGTGTGTTTAGTTGAAAATCACAATATATATATAT
Found at i:7368057 original size:18 final size:16
Alignment explanation
Indices: 7368013--7368058 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 16
7368003 AAGGTAGTTA
7368013 AAATATTATGTATAAT
1 AAATATTATGTATAAT
7368029 AATATAGTTATGTATTAAT
1 AA-ATA-TTATGTA-TAAT
7368048 ATAATATTATG
1 A-AATATTATG
7368059 ATAGATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.08
17 3 0.12
18 12 0.46
19 8 0.31
20 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (16 bp):
AAATATTATGTATAAT
Found at i:7376036 original size:49 final size:49
Alignment explanation
Indices: 7375946--7376051 Score: 126
Period size: 49 Copynumber: 2.2 Consensus size: 49
7375936 CCAGTTCATG
* *
7375946 GTGGTTATACGATCACATGTTCAAGTATAACTAGGGTTTCTAGTTGACA
1 GTGGTTATACGATCACATGTTCAAGTATAACTAGAGCTTCTAGTTGACA
* * *
7375995 GTGGTTATACGATCACGA-GTTTAAGTATAATTCA-AGCTTCTAGTTGATA
1 GTGGTTATACGATCAC-ATGTTCAAGTATAACT-AGAGCTTCTAGTTGACA
*
7376044 GTGATTAT
1 GTGGTTAT
7376052 GCGGTTACGG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 47 0.96
50 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (49 bp):
GTGGTTATACGATCACATGTTCAAGTATAACTAGAGCTTCTAGTTGACA
Found at i:7381723 original size:23 final size:21
Alignment explanation
Indices: 7381693--7381752 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 21
7381683 TAGTATGATA
**
7381693 AATTTTTTTAAAATATTCTTTT
1 AATTTTTTTAAAATATT-TCAT
*
7381715 GAATTTTTTTAAAAAATTTCAT
1 -AATTTTTTTAAAATATTTCAT
7381737 AATTTTTTTAAAATAT
1 AATTTTTTTAAAATAT
7381753 AAATTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 15 0.45
22 2 0.06
23 16 0.48
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (21 bp):
AATTTTTTTAAAATATTTCAT
Found at i:7381768 original size:44 final size:45
Alignment explanation
Indices: 7381693--7381778 Score: 104
Period size: 44 Copynumber: 1.9 Consensus size: 45
7381683 TAGTATGATA
** **
7381693 AATTTTTTTAAAATATTCTTTTGAATTTTTTTA-AAAAATTTCAT
1 AATTTTTTTAAAATATAATTTTGAAAATTTTTATAAAAATTTCAT
*
7381737 AATTTTTTTAAAATATAAATTTT-AAAATTTTTATAAATATTT
1 AATTTTTTTAAAATAT-AATTTTGAAAATTTTTATAAAAATTT
7381779 TGAATTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
44 24 0.69
45 11 0.31
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (45 bp):
AATTTTTTTAAAATATAATTTTGAAAATTTTTATAAAAATTTCAT
Found at i:7381786 original size:19 final size:18
Alignment explanation
Indices: 7381762--7381815 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
7381752 TAAATTTTAA
7381762 AATTTTTATAAATATTTT
1 AATTTTTATAAATATTTT
*
7381780 GAA-TTTTAAAAATTATTTT
1 -AATTTTTATAAA-TATTTT
*
7381799 AATTTTT-TAAAAATTTT
1 AATTTTTATAAATATTTT
7381816 TGTTGAGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 5 0.17
18 13 0.43
19 12 0.40
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
AATTTTTATAAATATTTT
Found at i:7381808 original size:20 final size:21
Alignment explanation
Indices: 7381696--7381813 Score: 79
Period size: 20 Copynumber: 5.6 Consensus size: 21
7381686 TATGATAAAT
*
7381696 TTTTTTAAAATATTCTTTTGAA
1 TTTTTTAAAA-ATTATTTTGAA
7381718 TTTTTTTAAAAA--ATTTCAT-AA
1 -TTTTTTAAAAATTATTT--TGAA
* *
7381739 TTTTTTTAAAATATAAATTTTAAA
1 -TTTTTTAAAA-AT-TATTTTGAA
* *
7381763 ATTTTTATAAA-TATTTTGAA
1 TTTTTTAAAAATTATTTTGAA
7381783 --TTTTAAAAATTATTTT-AA
1 TTTTTTAAAAATTATTTTGAA
7381801 TTTTTTAAAAATT
1 TTTTTTAAAAATT
7381814 TTTGTTGAGT
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
18 10 0.13
19 6 0.08
20 21 0.27
21 13 0.16
22 4 0.05
23 19 0.24
24 2 0.03
25 4 0.05
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTTTAAAAATTATTTTGAA
Found at i:7388374 original size:23 final size:23
Alignment explanation
Indices: 7388348--7388438 Score: 100
Period size: 23 Copynumber: 4.1 Consensus size: 23
7388338 TGAAAAGTTA
7388348 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAATAT
*
7388371 GAAGAGTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAATAT
* * * * *
7388394 GAAAAGT-TACACAC---ATTAT
1 GAAGAGTGAAGAGACTTGAATAT
7388413 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAATAT
7388436 GAA
1 GAA
7388439 AGGTTACACA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 9 0.17
20 4 0.08
22 4 0.08
23 35 0.67
ACGTcount: A:0.45, C:0.07, G:0.27, T:0.21
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAATAT
Found at i:7388415 original size:42 final size:42
Alignment explanation
Indices: 7388368--7388451 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
7388358 GAGACTTGAA
7388368 TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
1 TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
* *
7388410 TATGAAGAGTGAAGAGACTTGAATATGAAAGGTTACACACAT
1 TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
7388452 GCATGAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.23
Consensus pattern (42 bp):
TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
Found at i:7407847 original size:6 final size:6
Alignment explanation
Indices: 7407833--7407874 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
7407823 TTTTTTAAAC
*
7407833 AATTG- AATTGA AATTG- AATTGA AATTGA AATT-A AATTAA AAT
1 AATTGA AATTGA AATTGA AATTGA AATTGA AATTGA AATTGA AAT
7407875 ATTATTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
5 15 0.44
6 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (6 bp):
AATTGA
Found at i:7407849 original size:11 final size:11
Alignment explanation
Indices: 7407833--7407861 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
7407823 TTTTTTAAAC
7407833 AATTGAATTGA
1 AATTGAATTGA
7407844 AATTGAATTGA
1 AATTGAATTGA
7407855 AATTGAA
1 AATTGAA
7407862 ATTAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (11 bp):
AATTGAATTGA
Found at i:7408344 original size:25 final size:26
Alignment explanation
Indices: 7408283--7408349 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 26
7408273 AAAAATCGGA
* *
7408283 TGCCACAGGCGGCACAAAGGTGCTTG
1 TGCCAGAGGCGGCACCAAGGTGCTTG
*
7408309 TGGCAGA-GCGGCACCAAGGTGCCTT-
1 TGCCAGAGGCGGCACCAAGGTG-CTTG
7408334 T-CCAGAGGCGGCACCA
1 TGCCAGAGGCGGCACCA
7408350 CTCGTGTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 4 0.11
25 23 0.66
26 8 0.23
ACGTcount: A:0.22, C:0.30, G:0.34, T:0.13
Consensus pattern (26 bp):
TGCCAGAGGCGGCACCAAGGTGCTTG
Found at i:7408444 original size:9 final size:9
Alignment explanation
Indices: 7408430--7408463 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
7408420 GGTGCTACCG
7408430 GAAAAGAGA
1 GAAAAGAGA
7408439 GAAAAGAGA
1 GAAAAGAGA
7408448 GAAAGAGAAGA
1 GAAA-AG-AGA
7408459 GAAAA
1 GAAAA
7408464 AAGATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 13 0.57
10 3 0.13
11 7 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (9 bp):
GAAAAGAGA
Found at i:7408543 original size:21 final size:21
Alignment explanation
Indices: 7408515--7408555 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7408505 TTGTATAATT
*
7408515 TTTATTATTTTTGTT-GTTAG
1 TTTATTATTATTGTTAGTTAG
7408535 TTTAGTTATTATTGTTAGTTA
1 TTTA-TTATTATTGTTAGTTA
7408556 TTAAGATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.66
Consensus pattern (21 bp):
TTTATTATTATTGTTAGTTAG
Found at i:7413044 original size:10 final size:10
Alignment explanation
Indices: 7413029--7413056 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
7413019 TCTTTCCTTA
7413029 TTTCTTTTTC
1 TTTCTTTTTC
7413039 TTTCTTTTTC
1 TTTCTTTTTC
7413049 TTTCTTTT
1 TTTCTTTT
7413057 CTCATACGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:7413367 original size:75 final size:77
Alignment explanation
Indices: 7413276--7413418 Score: 218
Period size: 75 Copynumber: 1.9 Consensus size: 77
7413266 AGAGAGTTTG
* * *
7413276 ACTTCATTAAATTAATTAAGAAAAAACATGGAAAGGACATCGATATGGATAAC-A-CTCTTGGGA
1 ACTTCAATAAATTAATTAAGAAAAAACATGGAAAGAACATCAATATGGATAACAAGCTCTTGGGA
7413339 AGGTTTTAGAGC
66 AGGTTTTAGAGC
**
7413351 ACTTCAATAAATTAATTAAGAAAAAGTATGGAAAGAACATCAATATGGATAACAAGGCTCTTGGG
1 ACTTCAATAAATTAATTAAGAAAAAACATGGAAAGAACATCAATATGGATAACAA-GCTCTTGGG
7413416 AAG
65 AAG
7413419 CTTAGGAGGA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
75 48 0.80
76 1 0.02
78 11 0.18
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25
Consensus pattern (77 bp):
ACTTCAATAAATTAATTAAGAAAAAACATGGAAAGAACATCAATATGGATAACAAGCTCTTGGGA
AGGTTTTAGAGC
Found at i:7417326 original size:9 final size:9
Alignment explanation
Indices: 7417312--7417348 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7417302 TATAGTTTGA
7417312 TATTCGAAT
1 TATTCGAAT
7417321 TATTCGAAT
1 TATTCGAAT
*
7417330 TATTCGAGT
1 TATTCGAAT
7417339 TATTCGAAT
1 TATTCGAAT
7417348 T
1 T
7417349 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7418484 original size:225 final size:225
Alignment explanation
Indices: 7418043--7418493 Score: 699
Period size: 224 Copynumber: 2.0 Consensus size: 225
7418033 TGAGTCGAGT
*
7418043 CCTCTGTATACTGAGTCTGCATCCTAACCTAATGGGTTATCTGTAAAGATGGAAATAAGAGGAGG
1 CCTCTGTATACTGAGTCTGCATCCTAACCTAATGAGTTATCTGTAAAGATGGAAATAAGAGGAGG
* *
7418108 AGTGCACTTATGGAGCTTAGTATGAGTTCAATCACAAGAAAACCAGTGCAAACATTAGACAAATC
66 AGTGCACTTATGGAGCTCAGTATGAGTTCAATCACAAGAAAACCAGTGCAAACAATAGACAAATC
*
7418173 ATACAAATATCAACTTATAGAATGATCACAATTGAATAGAAATTCAAAATTTTGGTATTTCAAAT
131 ATACAAATATCAACTCATAGAATGATCACAATTGAATAGAAATTCAAAATTTTGGTATTTCAAAT
* * *
7418238 CAACTCGTCATCATAATATCTCAATATTCA
196 AAACTCATCACCATAATATCTCAATATTCA
* * *
7418268 CCTCTGTATAC-GAGTCCT-CGTCCTAACCTAGTGAGTTATCTGTAAAGATGGAAATAAGAGGGG
1 CCTCTGTATACTGAGT-CTGCATCCTAACCTAATGAGTTATCTGTAAAGATGGAAATAAGAGGAG
** *
7418331 GAGTGCGTTTATGGAGCTCAGTGTGAGTTCAATCACAAGAAAACCAGTGCAAACAATAGACAAAT
65 GAGTGCACTTATGGAGCTCAGTATGAGTTCAATCACAAGAAAACCAGTGCAAACAATAGACAAAT
** * *
7418396 TGTACAAAATATCAACTCATAGAATGATCACAATTGAATAGCAATTCAAAATTTTGGTATTTCGA
130 CATAC-AAATATCAACTCATAGAATGATCACAATTGAATAGAAATTCAAAATTTTGGTATTTCAA
* *
7418461 ATAAATTCATCACCATGATATCTCAATATTCA
194 ATAAACTCATCACCATAATATCTCAATATTCA
7418493 C
1 C
7418494 GTCTATGCAA
Statistics
Matches: 205, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
224 108 0.53
225 97 0.47
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (225 bp):
CCTCTGTATACTGAGTCTGCATCCTAACCTAATGAGTTATCTGTAAAGATGGAAATAAGAGGAGG
AGTGCACTTATGGAGCTCAGTATGAGTTCAATCACAAGAAAACCAGTGCAAACAATAGACAAATC
ATACAAATATCAACTCATAGAATGATCACAATTGAATAGAAATTCAAAATTTTGGTATTTCAAAT
AAACTCATCACCATAATATCTCAATATTCA
Found at i:7418774 original size:47 final size:46
Alignment explanation
Indices: 7418685--7418810 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
7418675 AACAACTGCT
*
7418685 AATATGTTGTGGATGAACCACTAGTC-AGCAGATGACTACCGACTAA
1 AATATGTTGTGGAT-AACTACTAGTCGAGCAGATGACTACCGACTAA
* * * *
7418731 AATATATTGCGGATAAACTACTAGTCGAGTAGATGACTGCCGACTAA
1 AATATGTTGTGGAT-AACTACTAGTCGAGCAGATGACTACCGACTAA
*
7418778 AATACGTTGTGGATAACTACTAGTCGAGCAGAT
1 AATATGTTGTGGATAACTACTAGTCGAGCAGAT
7418811 AAATTGTTGA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
46 40 0.58
47 29 0.42
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (46 bp):
AATATGTTGTGGATAACTACTAGTCGAGCAGATGACTACCGACTAA
Found at i:7421124 original size:25 final size:25
Alignment explanation
Indices: 7421045--7421124 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
7421035 GTACATGTAC
* *
7421045 GCTCATACGAGCTGTGAATCGGTAT
1 GCTCTTACGAGCTGTAAATCGGTAT
* * *
7421070 GCTCACT-CGAGCTGTAGATCAGTAT
1 GCTC-TTACGAGCTGTAAATCGGTAT
*
7421095 GCTCTTACGAGCTATAAATCGGTAT
1 GCTCTTACGAGCTGTAAATCGGTAT
7421120 GCTCT
1 GCTCT
7421125 GTGGGTCGGA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.96
26 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (25 bp):
GCTCTTACGAGCTGTAAATCGGTAT
Found at i:7422828 original size:17 final size:17
Alignment explanation
Indices: 7422785--7422838 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
7422775 CAATTATGAG
*
7422785 AGAAAT-GAGGAGGAAA
1 AGAAATAGAGGAAGAAA
7422801 AGAAA-AGAGGAAGAAA
1 AGAAATAGAGGAAGAAA
* *
7422817 ATAAATAGAGGATGAAGA
1 AGAAATAGAGGAAGAA-A
7422835 AGAA
1 AGAA
7422839 TTTTACATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 18 0.58
17 9 0.29
18 4 0.13
ACGTcount: A:0.61, C:0.00, G:0.31, T:0.07
Consensus pattern (17 bp):
AGAAATAGAGGAAGAAA
Found at i:7428066 original size:12 final size:12
Alignment explanation
Indices: 7428020--7428068 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
7428010 TAATAAGAGC
*
7428020 AATAATAAATAGT
1 AATAA-AAATAAT
*
7428033 GATAAAAATAAT
1 AATAAAAATAAT
**
7428045 AATAGCAATAAT
1 AATAAAAATAAT
7428057 AATAAAAATAAT
1 AATAAAAATAAT
7428069 TAAATGGTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
12 25 0.86
13 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (12 bp):
AATAAAAATAAT
Found at i:7430614 original size:3 final size:3
Alignment explanation
Indices: 7430574--7430598 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7430564 TCAATAGTGT
7430574 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
7430599 GCAACGCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7437379 original size:21 final size:21
Alignment explanation
Indices: 7437342--7437384 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
7437332 AGAATAATTT
7437342 TATTTATATTTTCAAATGTAAA
1 TATTTATATTTTCAAAT-TAAA
*
7437364 TATTTA-ATTTTTAAATTAAA
1 TATTTATATTTTCAAATTAAA
7437384 T
1 T
7437385 TTATGTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (21 bp):
TATTTATATTTTCAAATTAAA
Found at i:7438177 original size:29 final size:30
Alignment explanation
Indices: 7438122--7438179 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
7438112 AATTTGAATC
* *
7438122 AAAATTAAAGTTTGATGTATATAATTGTAA
1 AAAATTAAACTTTGATGTACATAATTGTAA
7438152 AAAATTAAACTTT-ATGTACA-AGATTGTA
1 AAAATTAAACTTTGATGTACATA-ATTGTA
7438180 CATTGGATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 1 0.04
29 12 0.48
30 12 0.48
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (30 bp):
AAAATTAAACTTTGATGTACATAATTGTAA
Found at i:7438995 original size:23 final size:26
Alignment explanation
Indices: 7438949--7438996 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 26
7438939 TAGCACTCAA
7438949 CGAGACAAGAGCCACTCCTTACGTGG
1 CGAGACAAGAGCCACTCCTTACGTGG
7438975 CGAGAC-AGAG-CACT-CTTACGTG
1 CGAGACAAGAGCCACTCCTTACGTG
7438997 TAGCACTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 4 0.18
25 4 0.18
26 6 0.27
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (26 bp):
CGAGACAAGAGCCACTCCTTACGTGG
Found at i:7439537 original size:66 final size:68
Alignment explanation
Indices: 7439403--7439537 Score: 222
Period size: 67 Copynumber: 2.0 Consensus size: 68
7439393 AAGGAAACAA
* *
7439403 AAGAGAATAAGAAGATGTCAAGAGATAGGACAAAAATTACCCAACGAACACCATTGAAGTTGATT
1 AAGAGAATAAGAAGATGTCAAGAGATAGCAAAAAAATTACCCAACGAACACCATTGAAGTTGATT
7439468 TCC
66 TCC
7439471 AAGAG-ATAAGCAA-ATGTCAAGAGATAGCAAAAAAATTACCC-ACGAACACCATTGAAGTTGAT
1 AAGAGAATAAG-AAGATGTCAAGAGATAGCAAAAAAATTACCCAACGAACACCATTGAAGTTGAT
7439533 TTCC
65 TTCC
7439537 A
1 A
7439538 GGGAGTTATC
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
66 26 0.41
67 31 0.48
68 7 0.11
ACGTcount: A:0.46, C:0.17, G:0.18, T:0.19
Consensus pattern (68 bp):
AAGAGAATAAGAAGATGTCAAGAGATAGCAAAAAAATTACCCAACGAACACCATTGAAGTTGATT
TCC
Done.