Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 220 of 228
Found at i:64724051 original size:57 final size:57
Alignment explanation
Indices: 64723948--64724073 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 57
64723938 AGAAATCATT
* * * *
64723948 TGAAAATGAAAATAGAGAAATTGAAACATTTGGAAGTGATTATGGTTTTCTCCAAAA
1 TGAAAATGAAAATAGAGAAATTAAAACATTTAGAAATGAATATGGTTTTCTCCAAAA
* * *
64724005 TGAAAATGAAAATGGAGAAA-TAAAATCATTTAGAAATTAATGTGGTTTTCTCCAAAA
1 TGAAAATGAAAATAGAGAAATTAAAA-CATTTAGAAATGAATATGGTTTTCTCCAAAA
64724062 TGAAAATGAAAA
1 TGAAAATGAAAA
64724074 ATTAAAATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
56 4 0.07
57 57 0.93
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (57 bp):
TGAAAATGAAAATAGAGAAATTAAAACATTTAGAAATGAATATGGTTTTCTCCAAAA
Found at i:64725731 original size:38 final size:38
Alignment explanation
Indices: 64725689--64725764 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
64725679 AATTGATTTC
64725689 AAATAGTTTAGTGACTAAATAGAAAAAATTAAAAGCTT
1 AAATAGTTTAGTGACTAAATAGAAAAAATTAAAAGCTT
*
64725727 AAATAGTTTAGTGACTAAATCGAAAAAATTAAAAGCTT
1 AAATAGTTTAGTGACTAAATAGAAAAAATTAAAAGCTT
64725765 GTAACCAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (38 bp):
AAATAGTTTAGTGACTAAATAGAAAAAATTAAAAGCTT
Found at i:64734977 original size:19 final size:19
Alignment explanation
Indices: 64734955--64735017 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
64734945 GGCATGTAAG
64734955 GTGCATATTGGCACATAAA
1 GTGCATATTGGCACATAAA
* * *
64734974 GTGCATCTTGGCGCACAAA
1 GTGCATATTGGCACATAAA
* *
64734993 -TCGCATACTGGCACATGAA
1 GT-GCATATTGGCACATAAA
64735012 GTGCAT
1 GTGCAT
64735018 CCTAGAAAAC
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
18 1 0.03
19 32 0.94
20 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (19 bp):
GTGCATATTGGCACATAAA
Found at i:64735813 original size:53 final size:53
Alignment explanation
Indices: 64735755--64735860 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
64735745 ATTTTTCATT
64735755 TTATTCAATTTATTCCTTAATGTGCGAAACTAATAATTAAACTTTACAATTTA
1 TTATTCAATTTATTCCTTAATGTGCGAAACTAATAATTAAACTTTACAATTTA
64735808 TTATTCAATTTATTCCTTAATGTGCGAAACTAATAATTAAACTTTACAATTTA
1 TTATTCAATTTATTCCTTAATGTGCGAAACTAATAATTAAACTTTACAATTTA
64735861 CTCATTTTCT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (53 bp):
TTATTCAATTTATTCCTTAATGTGCGAAACTAATAATTAAACTTTACAATTTA
Found at i:64738447 original size:62 final size:60
Alignment explanation
Indices: 64738367--64738592 Score: 238
Period size: 62 Copynumber: 3.6 Consensus size: 60
64738357 AAACAATGAA
* * * *
64738367 TTACATGGTCTGGACACACACCTGTGTCCCTGGCCGTGTGG-CTTTGTACCCAACACAGTGAG
1 TTACACGGCCTGGGCACAC-CCTGTGTCCCTGGCCGTGTGGTC-TTGTACCCAA-ACAGTAAG
* ** ** * *
64738429 TTACACTGCCTGGGCACACGTTCGTGTCCCTGGCTATGTGGTCTTGTACCAGAAATAGTAAG
1 TTACACGGCCTGGGCACACCCT-GTGTCCCTGGCCGTGTGGTCTTGTACC-CAAACAGTAAG
64738491 TTACACGGCCTGGGCACACGCCTGTGTCCCTGGCCGTGTGGTCTTGTACCACAAACAGTAAG
1 TTACACGGCCTGGGCACAC-CCTGTGTCCCTGGCCGTGTGGTCTTGTACC-CAAACAGTAAG
* * * *
64738553 TTACACGGCCTGAGCACACGCTCGTGTCTCTGGCAGTGTG
1 TTACACGGCCTGGGCACACCCT-GTGTCCCTGGCCGTGTG
64738593 AGCTCTGCAC
Statistics
Matches: 137, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
61 3 0.02
62 130 0.95
63 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (60 bp):
TTACACGGCCTGGGCACACCCTGTGTCCCTGGCCGTGTGGTCTTGTACCCAAACAGTAAG
Found at i:64744833 original size:62 final size:62
Alignment explanation
Indices: 64744748--64744923 Score: 219
Period size: 62 Copynumber: 2.8 Consensus size: 62
64744738 CTGTGTAGCT
* * * * * * *
64744748 TTGTACC-CTAAACAGTAAGTTACATAGCTTGGGCACACGCTCGTGTCCCTGGTCGTATTGTC
1 TTGTACCAC-AAATAGTGAGTTACACAGCTTAGGCACACGCTCGTGTCCCTAGCCGTATGGTC
*
64744810 TTGTACCACAAATAGTGAGTTACACAGCTTAGGCACACGCTTGTGTCCCTAGCCGTATGGTC
1 TTGTACCACAAATAGTGAGTTACACAGCTTAGGCACACGCTCGTGTCCCTAGCCGTATGGTC
* * * * *
64744872 TTGTACCACAACTAGTGAGTTACACGGCCTAGGCACACGCACGTGTGCCTAG
1 TTGTACCACAAATAGTGAGTTACACAGCTTAGGCACACGCTCGTGTCCCTAG
64744924 ATGTATGAAC
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
62 98 0.99
63 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (62 bp):
TTGTACCACAAATAGTGAGTTACACAGCTTAGGCACACGCTCGTGTCCCTAGCCGTATGGTC
Found at i:64748039 original size:18 final size:17
Alignment explanation
Indices: 64747996--64748070 Score: 79
Period size: 18 Copynumber: 4.5 Consensus size: 17
64747986 TGAATTATAG
64747996 GTTGAATTGAATACTTGA
1 GTTGAATTGAATACTT-A
64748014 GATT-AATTGAAGTACTTA
1 G-TTGAATTGAA-TACTTA
64748032 GTTGAATT-AA-A-TTA
1 GTTGAATTGAATACTTA
64748046 GTT-AATTGAAGTACTTA
1 GTTGAATTGAA-TACTTA
64748063 GTTGAATT
1 GTTGAATT
64748071 AAATTATCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
13 4 0.08
14 8 0.16
15 1 0.02
16 1 0.02
17 10 0.20
18 18 0.37
19 7 0.14
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.41
Consensus pattern (17 bp):
GTTGAATTGAATACTTA
Found at i:64748051 original size:31 final size:31
Alignment explanation
Indices: 64748016--64748076 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
64748006 ATACTTGAGA
64748016 TTAATTGAAGTACTTAGTTGAATTAAATTAG
1 TTAATTGAAGTACTTAGTTGAATTAAATTAG
64748047 TTAATTGAAGTACTTAGTTGAATTAAATTA
1 TTAATTGAAGTACTTAGTTGAATTAAATTA
64748077 TCTTAGATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.43
Consensus pattern (31 bp):
TTAATTGAAGTACTTAGTTGAATTAAATTAG
Found at i:64748052 original size:13 final size:14
Alignment explanation
Indices: 64748029--64748076 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
64748019 ATTGAAGTAC
64748029 TTAGTTGAATTAAA
1 TTAGTTGAATTAAA
64748043 TTAGTT-AATTGAAGTA
1 TTAGTTGAATT-AA--A
64748059 CTTAGTTGAATTAAA
1 -TTAGTTGAATTAAA
64748074 TTA
1 TTA
64748077 TCTTAGATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 4 0.14
14 11 0.38
15 1 0.03
16 1 0.03
17 8 0.28
18 4 0.14
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (14 bp):
TTAGTTGAATTAAA
Found at i:64750736 original size:102 final size:104
Alignment explanation
Indices: 64750560--64750791 Score: 389
Period size: 102 Copynumber: 2.3 Consensus size: 104
64750550 TTTAAATGTG
* *
64750560 AAGGGGGTTGCTAAGTGCTGATTCCCCCAACGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAACGGGTTGCTAAGTGATGATTCCCCGAATCATTGGT
*
64750625 GGTTGCTAAGTGCTGATTCCACCGTATC-TTGAATAT-A
66 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATATGA
* *
64750662 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTATGTGATGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAACGGGTTGCTAAGTGATGATTCCCCGAATCATTGGT
*
64750727 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATGTGA
66 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATATGA
64750766 AA-GGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
64750792 GAATCACTGG
Statistics
Matches: 122, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
102 88 0.72
103 31 0.25
104 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (104 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAACGGGTTGCTAAGTGATGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATATGA
Found at i:64777146 original size:18 final size:19
Alignment explanation
Indices: 64777123--64777160 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
64777113 GGAAGCAAGC
*
64777123 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
64777141 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
64777160 A
1 A
64777161 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:64796590 original size:17 final size:17
Alignment explanation
Indices: 64796550--64796596 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
64796540 CGTTTATCAA
64796550 TTTTTATAATCAAACTC
1 TTTTTATAATCAAACTC
* * *
64796567 -ATTTATAATTAAGCTC
1 TTTTTATAATCAAACTC
64796583 TTTTTATATATCAA
1 TTTTTATA-ATCAA
64796597 GGATAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
16 13 0.57
17 6 0.26
18 4 0.17
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (17 bp):
TTTTTATAATCAAACTC
Found at i:64798395 original size:13 final size:13
Alignment explanation
Indices: 64798377--64798402 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64798367 TAACTATCAT
64798377 GAGAAGCAAAGGA
1 GAGAAGCAAAGGA
64798390 GAGAAGCAAAGGA
1 GAGAAGCAAAGGA
64798403 TAAATACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.38, T:0.00
Consensus pattern (13 bp):
GAGAAGCAAAGGA
Found at i:64806733 original size:16 final size:17
Alignment explanation
Indices: 64806712--64806744 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64806702 ATAATTTTAC
*
64806712 TTTTATTAATT-TAAAA
1 TTTTATAAATTATAAAA
64806728 TTTTATAAATTATAAAA
1 TTTTATAAATTATAAAA
64806745 ATTATATACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTATAAATTATAAAA
Found at i:64816987 original size:37 final size:37
Alignment explanation
Indices: 64816937--64817015 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
64816927 TATATTTCCT
64816937 TTCGTTCGAAGATTTTACAATTTGGATAGTTTTAGGC
1 TTCGTTCGAAGATTTTACAATTTGGATAGTTTTAGGC
*
64816974 TTCGTTCGAAGATTTTACAGTTTGGATAGTTTTAGGC
1 TTCGTTCGAAGATTTTACAATTTGGATAGTTTTAGGC
64817011 TTCGT
1 TTCGT
64817016 GATTTTGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.22, C:0.11, G:0.23, T:0.44
Consensus pattern (37 bp):
TTCGTTCGAAGATTTTACAATTTGGATAGTTTTAGGC
Found at i:64818064 original size:25 final size:23
Alignment explanation
Indices: 64818036--64818093 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
64818026 TTTTAAAGTT
* *
64818036 AAATACTAATGGACAATAAATAATA
1 AAATACTAATAGAAAAT-AA-AATA
*
64818061 AAATAATAATAGAAAATAAAATA
1 AAATACTAATAGAAAATAAAATA
*
64818084 AAAAACTAAT
1 AAATACTAAT
64818094 CTTCATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 12 0.43
24 2 0.07
25 14 0.50
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (23 bp):
AAATACTAATAGAAAATAAAATA
Found at i:64837768 original size:21 final size:21
Alignment explanation
Indices: 64837744--64837785 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
64837734 ATATTTTCTT
64837744 ATACAACTTTTATTCCCATTA
1 ATACAACTTTTATTCCCATTA
64837765 ATACAACTTTTATTCCCATTA
1 ATACAACTTTTATTCCCATTA
64837786 TATTTTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (21 bp):
ATACAACTTTTATTCCCATTA
Found at i:64845178 original size:4 final size:4
Alignment explanation
Indices: 64845169--64845194 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
64845159 CATGTGTTTT
64845169 TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TA
64845195 GTTAATTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:64847017 original size:47 final size:47
Alignment explanation
Indices: 64846926--64847018 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 47
64846916 TATGTAACTA
* *
64846926 TCATAAAATATAAAAAGTATATATATAGATACATATATATATATGAG
1 TCATAAAATATAAAAAGCATATATATAGATACATATATAAATATGAG
* *
64846973 TCATAGAATATAAATAA-CATATATA-AGATACATATTTAAAATATGA
1 TCATAAAATATAAA-AAGCATATATATAGATACATATAT-AAATATGA
64847019 AGAATGTAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
46 11 0.28
47 27 0.68
48 2 0.05
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (47 bp):
TCATAAAATATAAAAAGCATATATATAGATACATATATAAATATGAG
Found at i:64848748 original size:44 final size:43
Alignment explanation
Indices: 64848700--64848973 Score: 217
Period size: 44 Copynumber: 6.4 Consensus size: 43
64848690 TTCTTCGCAA
*
64848700 CAACTTCAGAGAGAGAAGATCGGTGGTTTTGATCCGCTCCACTG
1 CAACTTCAGAGAGATAAGATC-GTGGTTTTGATCCGCTCCACTG
* * * * *
64848744 CAACTTCATG-GAGATAAGA-C-TGGATGTGGTCTGCTCTACTG
1 CAACTTCA-GAGAGATAAGATCGTGGTTTTGATCCGCTCCACTG
*
64848785 CAACTTCAGAGAGATAAGATCTGTGGTTTTGATCCGCTCCACTA
1 CAACTTCAGAGAGATAAGATC-GTGGTTTTGATCCGCTCCACTG
** * * * *
64848829 CTGCTTAAG-GAGGATAAGAT--TGATTTCTTCAATCTGCTCCACTG
1 CAACTTCAGAGA-GATAAGATCGTG-GTT-TT-GATCCGCTCCACTG
* * * * *
64848873 CAACCTCAGGGAGATAAGAT--TGGATGTGATCTGC-CCTACTG
1 CAACTTCAGAGAGATAAGATCGTGGTTTTGATCCGCTCC-ACTG
*
64848914 CAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTG
1 CAACTTCAGAGAGATAAGATC-GTGGTTTTGATCCGCTCCACTG
64848958 CAACTTCA-AGGAGATA
1 CAACTTCAGA-GAGATA
64848974 GGATTGGCTT
Statistics
Matches: 181, Mismatches: 33, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
40 3 0.02
41 63 0.35
42 4 0.02
43 7 0.04
44 99 0.55
45 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (43 bp):
CAACTTCAGAGAGATAAGATCGTGGTTTTGATCCGCTCCACTG
Found at i:64848898 original size:129 final size:129
Alignment explanation
Indices: 64848735--64848993 Score: 394
Period size: 129 Copynumber: 2.0 Consensus size: 129
64848725 GTTTTGATCC
* * * *
64848735 GCTCCACTGCAACTTCATGGAGATAAGACTGGATGTGGTCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACCTCAGGGAGATAAGACTGGATGTGATCTGCCCTACTGCAACTTCAGAGAGAT
* ** *
64848800 AAGATCTGTGGTTTTGATCCGCTCCACTACTGCTT-AAGGAGGATAAGATTGATTTCTTCAATCT
66 AAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAAGGA-GATAAGATTGACTTCTTCAATCT
*
64848864 GCTCCACTGCAACCTCAGGGAGATAAGATTGGATGTGATCTGCCCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACCTCAGGGAGATAAGACTGGATGTGATCTGCCCTACTGCAACTTCAGAGAGAT
* * *
64848929 AAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGCTTCTTCAATCT
66 AAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAAGGAGATAAGATTGACTTCTTCAATCT
64848993 G
1 G
64848994 TTTAACTGCA
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
129 112 0.96
130 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (129 bp):
GCTCCACTGCAACCTCAGGGAGATAAGACTGGATGTGATCTGCCCTACTGCAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAAGGAGATAAGATTGACTTCTTCAATCT
Found at i:64849167 original size:100 final size:98
Alignment explanation
Indices: 64848984--64850581 Score: 1463
Period size: 100 Copynumber: 16.2 Consensus size: 98
64848974 GGATTGGCTT
* * * * * * *
64848984 CTTCAATCTGTTTAACTGCAATGTCGGGGAAGTAAGACTCGCCGTCGTAGCTTCAATGTATTCCA
1 CTTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* * *
64849049 CTACACCGTCAGGGAAAGTAAGATTCGTCATTGTGG
65 CTGCACCG-CA-GGAAAGTAAGATTCGCCGTTGTGG
* * * * *
64849085 CCTT-GATCTTTTAATTGCAATGTTGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATGTATTCCA
1 -CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
*
64849149 CTACACCGTCAGGAAAAGTAAGATTCGCCGTTGTGG
65 CTGCACCG-CAGG-AAAGTAAGATTCGCCGTTGTGG
* * * *
64849185 CCTCAATCTTTTAATTGCAATGTCGGGGAAGCGAGATTCGCTGTCGTAGCTTCAATCTGTTCCGC
1 CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
* * * *
64849250 TGCATCAC-CTGGGAAGTAAGATTTGCCTTTGTGG
66 TGCA-C-CGCAGGAAAGTAAGATTCGCCGTTGTGG
* * * * **
64849284 CTTCAATCTTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGCAGCTTCAATCTATTCTGC
1 CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
* *
64849349 TGCATCCCCTGGAAAGTAAGATTCGCCGTTGTGG
66 TGCA-CCGCAGGAAAGTAAGATTCGCCGTTGTGG
* *
64849383 CTTCAATC-TTT--TT--AACTGCCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTAATTGCAA-TGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* * * *
64849443 CTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAG
65 CTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
*
64849478 CTTCAATCTTTTTAATTGC-----CGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* * * *
64849538 CTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAG
65 CTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
* * *
64849573 CTTCAATCTTTTTAAATGCAATGTCAGGGAAGTAAGA-TCTGCTGTTGTAGCTTCAATCTGTTCC
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTC-GCTGTTGTAGCTTCAATCTGTTCC
* * * *
64849637 ACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAG
64 ACTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
* * * *
64849673 CTTCAATCTTCTTAATTGCAATGTC-AGGAAGCGAGATTCGCTGTCGTAGCTTCAATCTGTTCCG
1 CTTCAATCTT-TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* *
64849737 CTGCATCAC-CTAGG-AAGTAAGATTTGCCTTTGTGG
65 CTGCA-C-CGC-AGGAAAGTAAGATTCGCCGTTGTGG
* * * * * *
64849772 CTTCAATATTTTAATTGTAATGTCGGGGAAGCAAGATTCACCGTTGTAACTTCAATCTGTTCCGC
1 CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
* *
64849837 TGCATCGCCTGGAAAGTAAGATTCGCCGTTGTGG
66 TGCACCG-CAGGAAAGTAAGATTCGCCGTTGTGG
** * *
64849871 CTTCAATC-TTT--TT--AACTACCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCCGTTCCA
1 CTTCAATCTTTTAATTGCAA-TGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* * * * * *
64849931 CTACAACGCTAGGAAAGTAAGATCCACTGTTGTAG
65 CTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
* *
64849966 CTTCAATCTTTTTAATTGC-----CGGGGAAGCAAAATCCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
** * * *
64850026 CTGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAG
65 CTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
* * * * * *
64850061 CTTCAATCTTTTTAAATGCAATGTCAGGGAAGTAA-AATCTGCTGTTGTAGCTTCAATCTATTCT
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTC-GCTGTTGTAGCTTCAATCTGTTCC
* * * * *
64850125 GCTGCATCGCTAGGAAAGTAAGATCCGCTGTTGTAG
64 ACTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
** * * * * *
64850161 CTTCAATCTTTTTAAAAGCAATGTCAGGGAAGTAAGATCCACTATTGTAGCTTCAATCTGTTCCA
1 CTTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* * * * * *
64850226 CTGCAACACTAGGAAAGTAAGATCCGCTGTTATAG
65 CTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
* * *
64850261 CTTCAATCTTTTTAATTGCAATGTCAGGGG-AGTAAGATCCGCTGTTGTAGCTTCAATTTGTTCC
1 CTTCAATC-TTTTAATTGCAATGTC-GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * *
64850325 ACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAG
64 ACTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
** * * *
64850361 CTTCAATCTTCTTAATTGCAATGTCAAGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATCTT-TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
* *** *
64850426 CTGCAACGCTAGGAAAGTAAGA-TCTGATATTGTAG
65 CTGCACCGC-AGGAAAGTAAGATTC-GCCGTTGTGG
* * *
64850461 CTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATCTT-TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
** * ** *
64850526 CTGCAATGCTAGGAAAGTAAGATCCGCTATTGTAG
65 CTGCACCGC-AGGAAAGTAAGATTCGCCGTTGTGG
64850561 CTTCAATCTTTTTAATTGCAA
1 CTTCAATC-TTTTAATTGCAA
64850582 ACTATGGTTT
Statistics
Matches: 1312, Mismatches: 136, Indels: 98
0.85 0.09 0.06
Matches are distributed among these distances:
94 7 0.01
95 324 0.25
96 4 0.00
97 7 0.01
98 22 0.02
99 256 0.20
100 674 0.51
101 14 0.01
102 4 0.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (98 bp):
CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCAC
TGCACCGCAGGAAAGTAAGATTCGCCGTTGTGG
Found at i:64849287 original size:50 final size:49
Alignment explanation
Indices: 64849164--64849881 Score: 190
Period size: 50 Copynumber: 14.7 Consensus size: 49
64849154 CCGTCAGGAA
* * ** ** *
64849164 AAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAAT-GTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCAGCTGC-ATCACCTGGG
** * * * *
64849213 AAGCGAGATTCGCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCAGCTGCATCACCTGGG
* * * ** * ** *
64849263 AAGTAAGATTTGCCTTTGTGGCTTCAATCTTTTAATTGTAAT-GTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCAGCTG-CATCACCTGGG
* ** * * *
64849312 AAGCAAGATTCGCCGTTGCAGCTTCAATCTATTCTGCTGCATCCCCTGGA
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCAGCTGCATCACCTGGG
* * *
64849362 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTG-----CCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCAGCTGCATCACCTGGG
* * * * *
64849407 AAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCA-CTGCA--ACGCTAGGA
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TT-CAGCTGCATCAC-CT-GGG
* * * ** ** *
64849457 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTT----TTAATTGCCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCAGCTGCATCACCTGGG
* * * * *
64849502 AAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCA-CTGCA--ACGCTAGGA
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TT-CAGCTGCATCAC-CT-GGG
* * * * ** ** *
64849552 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAATGCAAT-GTCAGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATC-TTTCAGCTGC-ATCACCTGGG
* * *
64849602 AAGTAAGA-TCTGCTGTTGTAGCTTCAATCTGTTCCA-CTGCA--ACGCTAGGA
1 AAGTAAGATTC-GCCGTTGTGGCTTCAATCT-TT-CAGCTGCATCAC-CT-GGG
* * * * ** ** *
64849652 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCA--ATGTCAGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCTT-TCAGCTGCATCACCT-GGG
** * * * * *
64849701 AAGCGAGATTCGCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTAGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCAGCTGCATCACCTGGG
* * * * ** * ** *
64849751 AAGTAAGATTTGCCTTTGTGGCTTCAATATTTTAATTGTAAT-GTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCAGCTG-CATCACCTGGG
* * ** * * *
64849800 AAGCAAGATTCACCGTTGTAACTTCAATCTGTTCCGCTGCATCGCCTGGA
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTCAGCTGCATCACCTGGG
64849850 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
1 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
64849882 TTAACTACCG
Statistics
Matches: 492, Mismatches: 137, Indels: 80
0.69 0.19 0.11
Matches are distributed among these distances:
44 1 0.00
45 67 0.14
46 4 0.01
47 1 0.00
48 2 0.00
49 139 0.28
50 270 0.55
51 8 0.02
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (49 bp):
AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTCAGCTGCATCACCTGGG
Found at i:64849867 original size:488 final size:487
Alignment explanation
Indices: 64849093--64850581 Score: 2099
Period size: 488 Copynumber: 3.0 Consensus size: 487
64849083 GGCCTTGATC
* ** * * * * *
64849093 TTTTAATTGCAATGTTGGGGAAGCAAGAT-TCGCCGTTGTAGCTTCAATGTATTCCACTACACCG
1 TTTTAAATGCAATGTCAGGGAAGTAAGATCT-GCTGTTGTAGCTTCAATCTATTCCACTGCAACG
* * * * *
64849157 -TCAGGAAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCGAGA
65 CT-AGG-AAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTAATTGCAATGTC-AGGAAGCGAGA
*
64849221 TTCGCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTGGGAAGTAAGATTTGCCTTTGTGGCT
127 TTCGCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTAGGAAGTAAGATTTGCCTTTGTGGCT
* * * *
64849286 TCAATCTTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGCAGCTTCAATCTATTCTGCTG
192 TCAATATTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTG
*
64849351 CATCCCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTGCCGGGGAAGCAAGAT
257 CATCGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTGCCGGGGAAGCAAGAT
64849416 CCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTT
322 CCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTT
*
64849481 CAATCTTTTTAATTGCCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACG
387 CAATCTTTTTAATTGCCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATG
64849546 CTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
452 CTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
*
64849582 TTTTAAATGCAATGTCAGGGAAGTAAGATCTGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGC
1 TTTTAAATGCAATGTCAGGGAAGTAAGATCTGCTGTTGTAGCTTCAATCTATTCCACTGCAACGC
64849647 TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGAAGCGAGATTC
66 TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTT-TTAATTGCAATGTCAGGAAGCGAGATTC
64849712 GCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTAGGAAGTAAGATTTGCCTTTGTGGCTTCA
130 GCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTAGGAAGTAAGATTTGCCTTTGTGGCTTCA
* *
64849777 ATATTTTAATTGTAATGTCGGGGAAGCAAGATTCACCGTTGTAACTTCAATCTGTTCCGCTGCAT
195 ATATTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCAT
*
64849842 CGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTACCGGGGAAGCAAGATCCG
260 CGCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTGCCGGGGAAGCAAGATCCG
* * *
64849907 CTGTTGTAGCTTCAATCCGTTCCACTACAACGCTAGGAAAGTAAGATCCACTGTTGTAGCTTCAA
325 CTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAA
*
64849972 TCTTTTTAATTGCCGGGGAAGCAAAATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTA
390 TCTTTTTAATTGCCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTA
64850037 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
455 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
* ** *
64850070 TTTTAAATGCAATGTCAGGGAAGTAAAATCTGCTGTTGTAGCTTCAATCTATTCTGCTGCATCGC
1 TTTTAAATGCAATGTCAGGGAAGTAAGATCTGCTGTTGTAGCTTCAATCTATTCCACTGCAACGC
** ** *
64850135 TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAAAGCAATGTCAGGGAAGTAAGATC
66 TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC-TTTTAATTGCAATGTCA-GGAAGCGAGATT
* * * * * ** * *
64850200 CACTATTGTAGCTTCAATCTGTTCCACTGCAACA-CTAGGAAAGTAAGATCCG-CTGTTATAGCT
129 CGCTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTAGG-AAGTAAGATTTGCCT-TTGTGGCT
* * * * * * *
64850263 TCAATCTTTTTAATTGCAATGTCAGGGG-AGTAAGATCCGCTGTTGTAGCTTCAATTTGTTCCAC
192 TCAAT-ATTTTAATTGTAATGTC-GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGC
* * * * * * ** *
64850327 TGCAACG-CTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATGTCAAGAA
255 TGCATCGCCT-GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAA---C--TGCCGGGGA
* * * *
64850391 AGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCTGATAT
314 AGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGT
* * *
64850456 TGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTG
379 TGTAGCTTCAATCTTTTTAATTGC-----CGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTG
*
64850521 TTCCACTGCAATGCTAGGAAAGTAAGATCCGCTATTGTAGCTTCAATCT
439 TTCCACTGCAATGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
*
64850570 TTTTAATTGCAA
1 TTTTAAATGCAA
64850582 ACTATGGTTT
Statistics
Matches: 901, Mismatches: 79, Indels: 29
0.89 0.08 0.03
Matches are distributed among these distances:
488 499 0.55
489 133 0.15
490 87 0.10
491 4 0.00
493 1 0.00
495 85 0.09
500 92 0.10
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (487 bp):
TTTTAAATGCAATGTCAGGGAAGTAAGATCTGCTGTTGTAGCTTCAATCTATTCCACTGCAACGC
TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTAATTGCAATGTCAGGAAGCGAGATTCG
CTGTCGTAGCTTCAATCTGTTCCGCTGCATCACCTAGGAAGTAAGATTTGCCTTTGTGGCTTCAA
TATTTTAATTGTAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGCATC
GCCTGGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTGCCGGGGAAGCAAGATCCGC
TGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAAT
CTTTTTAATTGCCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTAG
GAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
Found at i:64850581 original size:50 final size:50
Alignment explanation
Indices: 64849359--64850581 Score: 992
Period size: 50 Copynumber: 24.9 Consensus size: 50
64849349 TGCATCCCCT
* * * *
64849359 GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACTGC----C-G
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* * * ** *
64849404 GGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
**
64849454 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAA-T----TGCCG
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* * * ** *
64849499 GGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
*
64849549 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAATGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
* * * ** *
64849599 GGGAAGTAAGATCTGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* *
64849649 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
** * * * *** *
64849699 GG-AAGCGAGATTCGCTGTCGTAGCTTCAATCTGTTCCGCTGC-ATCACCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAAT--GCTA
** * * * * *
64849749 GG-AAGTAAGATTTGCCT-TTGTGGCTTCAAT-ATTTTAATTGTAATG-TCG
1 GGAAAGTAAGATCCG-CTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
* * * * * * * ***
64849797 GGGAAGCAAGATTCACCGTTGTAACTTCAATCTGTTCCGCTGC-ATCGCCT-
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAAT-G-CTA
* * * **
64849847 GGAAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAACT---A--CCG
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* * ** ** * *
64849892 GGGAAGCAAGATCCGCTGTTGTAGCTTCAATCCGTTCCACTACAACGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* **
64849942 GGAAAGTAAGATCCACTGTTGTAGCTTCAATCTTTTTAA-T----TGCCG
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* * * * **
64849987 GGGAAGCAAAATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
*
64850037 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAATGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
* * * * *
64850087 GGGAAGTAAAATCTGCTGTTGTAGCTTCAATCTATTCT-GCTGC-ATCGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT-TTTTAACTGCAAT-GCTA
**
64850137 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAAAAGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
* * * * ** **
64850187 GGGAAGTAAGATCCACTATTGTAGCTTCAATCTGTTCCACTGCAACACTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* *
64850237 GGAAAGTAAGATCCGCTGTTATAGCTTCAATCTTTTTAATTGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
** ** *
64850287 GGGGAGTAAGATCCGCTGTTGTAGCTTCAAT-TTGTTCCACTGCAACGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTT-TTTAACTGCAATGCTA
* *
64850337 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTCTTAATTGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
* * ** *
64850387 AGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* * * * *
64850437 GGAAAGTAAGATCTGATATTGTAGCTTCAATCTTCTTAATTGCAATG-TCA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCT-A
* * **
64850487 GGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCAATGCTA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
* *
64850537 GGAAAGTAAGATCCGCTATTGTAGCTTCAATCTTTTTAATTGCAA
1 GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAA
64850582 ACTATGGTTT
Statistics
Matches: 915, Mismatches: 211, Indels: 99
0.75 0.17 0.08
Matches are distributed among these distances:
44 1 0.00
45 137 0.15
46 2 0.00
47 1 0.00
48 7 0.01
49 73 0.08
50 677 0.74
51 16 0.02
52 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (50 bp):
GGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGCTA
Found at i:64850654 original size:45 final size:44
Alignment explanation
Indices: 64850605--64850732 Score: 123
Period size: 44 Copynumber: 2.9 Consensus size: 44
64850595 CGATCTGTTT
* *
64850605 CGCTGTCAGTACAGGAATGCAAGATTTGCTATCTTCATTCTGCTC
1 CGCTGTCAGTACAGGAAAGCAAGATTTGCTATCTTCATT-TACTC
* * * * *
64850650 CGCTGTCAGTACAGGAAAACAAG-GTTGGTGTCTTCGATTTACTT
1 CGCTGTCAGTACAGGAAAGCAAGATTTGCTATCTTC-ATTTACTC
* * * * *
64850694 CACTGCCAGTACAGGAAGGCATGATCTGCTATCTTCATT
1 CGCTGTCAGTACAGGAAAGCAAGATTTGCTATCTTCATT
64850733 GATCTGTTCT
Statistics
Matches: 65, Mismatches: 16, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
44 33 0.51
45 32 0.49
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (44 bp):
CGCTGTCAGTACAGGAAAGCAAGATTTGCTATCTTCATTTACTC
Found at i:64851984 original size:7 final size:7
Alignment explanation
Indices: 64851972--64852080 Score: 179
Period size: 7 Copynumber: 16.0 Consensus size: 7
64851962 TTAGCCTCTC
64851972 CATTTTT
1 CATTTTT
64851979 CA-TTTT
1 CATTTTT
64851985 CATTTTT
1 CATTTTT
64851992 CATTTTT
1 CATTTTT
64851999 CATTTTT
1 CATTTTT
64852006 CATTTTT
1 CATTTTT
*
64852013 CA-TTCT
1 CATTTTT
64852019 CATTTTT
1 CATTTTT
64852026 CATTTTT
1 CATTTTT
64852033 CATTTTT
1 CATTTTT
64852040 CATTTTT
1 CATTTTT
64852047 CATTTTT
1 CATTTTT
*
64852054 CA-TTCT
1 CATTTTT
64852060 CATTTTT
1 CATTTTT
64852067 CATTTTT
1 CATTTTT
64852074 CATTTTT
1 CATTTTT
64852081 TTTACTTAGA
Statistics
Matches: 95, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
6 16 0.17
7 79 0.83
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:64852010 original size:34 final size:34
Alignment explanation
Indices: 64851972--64852080 Score: 184
Period size: 34 Copynumber: 3.2 Consensus size: 34
64851962 TTAGCCTCTC
64851972 CATTTTTCATTTTCATTTTTCATTTTTCATTTTT
1 CATTTTTCATTTTCATTTTTCATTTTTCATTTTT
*
64852006 CATTTTTCATTCTCATTTTTCATTTTTCATTTTT
1 CATTTTTCATTTTCATTTTTCATTTTTCATTTTT
*
64852040 CATTTTTCATTTTTCA-TTCTCATTTTTCATTTTT
1 CATTTTTCA-TTTTCATTTTTCATTTTTCATTTTT
64852074 CATTTTT
1 CATTTTT
64852081 TTTACTTAGA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 66 0.93
35 5 0.07
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (34 bp):
CATTTTTCATTTTCATTTTTCATTTTTCATTTTT
Found at i:64852026 original size:41 final size:41
Alignment explanation
Indices: 64851981--64852080 Score: 200
Period size: 41 Copynumber: 2.4 Consensus size: 41
64851971 CCATTTTTCA
64851981 TTTTCATTTTTCATTTTTCATTTTTCATTTTTCATTCTCAT
1 TTTTCATTTTTCATTTTTCATTTTTCATTTTTCATTCTCAT
64852022 TTTTCATTTTTCATTTTTCATTTTTCATTTTTCATTCTCAT
1 TTTTCATTTTTCATTTTTCATTTTTCATTTTTCATTCTCAT
64852063 TTTTCATTTTTCATTTTT
1 TTTTCATTTTTCATTTTT
64852081 TTTACTTAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (41 bp):
TTTTCATTTTTCATTTTTCATTTTTCATTTTTCATTCTCAT
Found at i:64852998 original size:6 final size:6
Alignment explanation
Indices: 64852989--64853013 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
64852979 TTTCTTTTTC
64852989 TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT T
64853014 GACTTTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:64861383 original size:15 final size:16
Alignment explanation
Indices: 64861363--64861405 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
64861353 TTACAGAGGT
64861363 AAATAAA-ATATTAAA
1 AAATAAATATATTAAA
*
64861378 AAATAAATATTTTAAA
1 AAATAAATATATTAAA
64861394 AAA-AAGATATAT
1 AAATAA-ATATAT
64861406 GTCAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
AAATAAATATATTAAA
Found at i:64866690 original size:23 final size:23
Alignment explanation
Indices: 64866660--64866708 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
64866650 ATTGAAACAA
64866660 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
64866683 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
64866706 CAT
1 CAT
64866709 CTTTTTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (23 bp):
CATAATGATAGCTAATATGCTTT
Found at i:64871187 original size:23 final size:23
Alignment explanation
Indices: 64871157--64871205 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
64871147 ATTGAAACAA
64871157 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
64871180 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
64871203 CAT
1 CAT
64871206 CTTTTTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (23 bp):
CATAATGATAGCTAATATGCTTT
Found at i:64873449 original size:18 final size:19
Alignment explanation
Indices: 64873422--64873458 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
64873412 TTTCTTCTTC
*
64873422 GTTTTCTCTTA-TTTATTT
1 GTTTTATCTTATTTTATTT
64873440 GTTTTATCTTATTTTATTT
1 GTTTTATCTTATTTTATTT
64873459 TACTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (19 bp):
GTTTTATCTTATTTTATTT
Found at i:64886583 original size:132 final size:132
Alignment explanation
Indices: 64886344--64887470 Score: 980
Period size: 132 Copynumber: 8.5 Consensus size: 132
64886334 ATTGATTTTA
* *
64886344 TAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
* * * *
64886409 GTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGA
66 GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGAGTGA
64886474 AG
131 AG
* *
64886476 TAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCGAAGATGCAGATCTT
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
* *
64886541 GTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCA-TG
66 GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-AGTG
64886605 AAG
130 AAG
* * *
64886608 TAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGATCTT
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
* * * * * * *
64886673 GTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAA-CAGGTCCTATCTTCCTATATTGGTAG-
66 GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATATTGG-AGT
64886736 GAAG
129 GAAG
* * * * * * * * * *
64886740 TGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATC
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATC
*** *** * * * * *
64886804 TTGTCTTCATGTATTGG-CATGAAGTAGATCGAAGATAA-CAGGTCCTATCTTCCTATATTGATA
64 TTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATATTG-GA
64886867 G-GAAG
127 GTGAAG
* * * * * * * * * * * *
64886872 TGGATCCAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAACAGGTC
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATC
* * * * * *
64886936 CTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATAT-TTGTG
64 TTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT--CATATATTG-G
*
64886998 -GCGAAG
126 AGTGAAG
* * * * * * * * * *
64887004 TAGATCGCAGA-AAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAACAGGTC
1 TAGATCGAAGATAA-CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATC
* * * * * * * * ** * *
64887068 CTATCTTCCTATATTGATAG-GAAGTGGATCCAA-AATGCAGATCTTGTCTTCCCATACTGGTGG
64 TTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-AG
64887131 TGAAG
128 TGAAG
* *
64887136 TAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
* * *
64887201 GTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCA-TG
66 GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGG-AGTG
64887265 AAG
130 AAG
* * * *
64887268 TAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAAATGCAGATCTT
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
* * * * * * *
64887333 GTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAA-CAGGTCCTATCTTCCTATATTGGTAG-
66 GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATATATTGG-AGT
64887396 GAAG
129 GAAG
* * * * * * * *
64887400 TGGATCGAAGAT-ACAGATCTTGTCTTCCCATATT-GTGGCGAAGTAGATCGCAGAAAGCAGATC
1 TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATC
64887463 TTGTCTTC
64 TTGTCTTC
64887471 ATGTATTGGC
Statistics
Matches: 836, Mismatches: 134, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
130 7 0.01
131 80 0.10
132 677 0.81
133 72 0.09
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (132 bp):
TAGATCGAAGATAACAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTT
GTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGAGTGA
AG
Found at i:64886726 original size:220 final size:220
Alignment explanation
Indices: 64886470--64887591 Score: 2165
Period size: 220 Copynumber: 5.1 Consensus size: 220
64886460 ATGTATTGGC
* *
64886470 GTGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCGAAGATGCA
1 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
*
64886535 GATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
64886600 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
131 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
64886665 CAGATCTTGTCTTCCCATACTGGTG
196 CAGATCTTGTCTTCCCATACTGGTG
64886690 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
1 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
64886755 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
64886820 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
131 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
64886885 CAGATCTTGTCTTCCCATACTGGTG
196 CAGATCTTGTCTTCCCATACTGGTG
64886910 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
1 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
64886975 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
*
64887040 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAAATG
131 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
64887105 CAGATCTTGTCTTCCCATACTGGTG
196 CAGATCTTGTCTTCCCATACTGGTG
64887130 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
1 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
64887195 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
*
64887260 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAAATG
131 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
64887325 CAGATCTTGTCTTCCCATACTGGTG
196 CAGATCTTGTCTTCCCATACTGGTG
*
64887350 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACA
1 GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
64887415 GATCTTGTCTTCCCATA-TTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
66 GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
64887479 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
131 GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
64887544 CAGATCTTGTCTTCCCATACTGGTG
196 CAGATCTTGTCTTCCCATACTGGTG
* *
64887569 GTGAAGTAGATCGAAGAAAACAG
1 GTGAAGTAGATCAAAGATAACAG
64887592 ATCGACGATG
Statistics
Matches: 894, Mismatches: 8, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
219 157 0.18
220 737 0.82
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (220 bp):
GTGAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCA
GATCTTGTCTTCCCATATTTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
GCATGAAGTAGATCGAAGATAACAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATG
CAGATCTTGTCTTCCCATACTGGTG
Found at i:64888450 original size:18 final size:19
Alignment explanation
Indices: 64888423--64888459 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
64888413 TTTCTTCTTC
*
64888423 GTTTTCTCTTA-TTTATTT
1 GTTTTATCTTATTTTATTT
64888441 GTTTTATCTTATTTTATTT
1 GTTTTATCTTATTTTATTT
64888460 TACTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.14, C:0.08, G:0.05, T:0.73
Consensus pattern (19 bp):
GTTTTATCTTATTTTATTT
Found at i:64892402 original size:4 final size:4
Alignment explanation
Indices: 64892393--64892439 Score: 76
Period size: 4 Copynumber: 11.8 Consensus size: 4
64892383 CATGTGTTTT
* *
64892393 TACA TACA TACA TACA TGCA TACA TACA TACA TACA CACA TACA TAC
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TAC
64892440 TTAATTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (4 bp):
TACA
Found at i:64893967 original size:51 final size:51
Alignment explanation
Indices: 64893912--64894031 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 51
64893902 GCCCTCAAAG
* *
64893912 TTTACACATTCTATCAATTTG-TTATTGATTTAACAAATTTAACTCACAACA
1 TTTACACATTCTATCAATTTGATCA-TGATTTAACAAATTTAACCCACAACA
* * * *
64893963 TTTACACATT-TCGTCAATTTGATCATGATTTAACATATTTAACCCATAATA
1 TTTACACATTCT-ATCAATTTGATCATGATTTAACAAATTTAACCCACAACA
*
64894014 ATTACACATTCTATCAAT
1 TTTACACATTCTATCAAT
64894032 ATTTACGCGA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
50 1 0.02
51 54 0.93
52 3 0.05
ACGTcount: A:0.37, C:0.18, G:0.04, T:0.41
Consensus pattern (51 bp):
TTTACACATTCTATCAATTTGATCATGATTTAACAAATTTAACCCACAACA
Found at i:64894618 original size:6 final size:6
Alignment explanation
Indices: 64894607--64894632 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
64894597 ATTCTATTAA
64894607 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
64894633 AGTTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:64902366 original size:30 final size:30
Alignment explanation
Indices: 64902330--64902390 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
64902320 TAGGAATCCC
64902330 AAGTCACCATAATTAGGTGATGAGGATGGT
1 AAGTCACCATAATTAGGTGATGAGGATGGT
64902360 AAGTCACCATAATTAGGTGATGAGGATGGT
1 AAGTCACCATAATTAGGTGATGAGGATGGT
64902390 A
1 A
64902391 CTTAACTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (30 bp):
AAGTCACCATAATTAGGTGATGAGGATGGT
Found at i:64904035 original size:19 final size:19
Alignment explanation
Indices: 64904011--64904048 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
64904001 AAATATTAAT
64904011 TTTTTTTAATTTTAAAATA
1 TTTTTTTAATTTTAAAATA
*
64904030 TTTTTTTATTTTTAAAATA
1 TTTTTTTAATTTTAAAATA
64904049 AATTTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTTTAATTTTAAAATA
Found at i:64904054 original size:19 final size:19
Alignment explanation
Indices: 64904013--64904055 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
64904003 ATATTAATTT
**
64904013 TTTTTAATTTTAAAATATT
1 TTTTTAATTTTAAAATAAA
*
64904032 TTTTTATTTTTAAAATAAA
1 TTTTTAATTTTAAAATAAA
64904051 TTTTT
1 TTTTT
64904056 GGTGTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTAATTTTAAAATAAA
Found at i:64906551 original size:117 final size:117
Alignment explanation
Indices: 64906344--64906582 Score: 379
Period size: 117 Copynumber: 2.0 Consensus size: 117
64906334 AACAGGTGTC
* *
64906344 CGAAATGGAACATAAATATGACAAGACAACCACGGCTCTTCAAGAACTCGTTGATGGCCTTGTAG
1 CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
* *
64906409 CGAAAATTGACTCCAAGGACAGTAGTTTGCGGGATTGGGAGCTTCGATATAA
66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
* ** * * * *
64906461 GGAAATGGAACATAAATATGATGAGACGACCGCAGCTCTTCAAGGACTCGTCGATGGTCTTGTAG
1 CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
64906526 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
64906578 CGAAA
1 CGAAA
64906583 CCGTGAGACA
Statistics
Matches: 110, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
117 110 1.00
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (117 bp):
CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
Found at i:64908502 original size:21 final size:21
Alignment explanation
Indices: 64908456--64908495 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
64908446 ACTTACCTTC
64908456 AAAATGCATAAAAAAATATTG
1 AAAATGCATAAAAAAATATTG
64908477 AAAATGCAT-AAAAAATATT
1 AAAATGCATAAAAAAATATT
64908496 ATCAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (21 bp):
AAAATGCATAAAAAAATATTG
Found at i:64909016 original size:9 final size:9
Alignment explanation
Indices: 64909002--64909125 Score: 85
Period size: 9 Copynumber: 13.1 Consensus size: 9
64908992 TTTTGGTACA
64909002 ATAATTTTT
1 ATAATTTTT
64909011 ATAATTTTTTT
1 ATAA--TTTTT
64909022 ATGAA-TTTT
1 AT-AATTTTT
64909031 ATATATTTTT
1 ATA-ATTTTT
64909041 -TAATTTTT
1 ATAATTTTT
64909049 ATAATTTTCT
1 ATAATTTT-T
*
64909059 -TACTATTTT
1 ATAAT-TTTT
*
64909068 ATAAAATTTT
1 AT-AATTTTT
64909078 ATAATTTTT
1 ATAATTTTT
**
64909087 GCATTTTTTTT
1 --ATAATTTTT
64909098 ATAATTTTT
1 ATAATTTTT
64909107 A-AATTTTT
1 ATAATTTTT
*
64909115 AATAAATTTT
1 -ATAATTTTT
64909125 A
1 A
64909126 ACTCTTTTTT
Statistics
Matches: 92, Mismatches: 9, Indels: 28
0.71 0.07 0.22
Matches are distributed among these distances:
8 14 0.15
9 40 0.43
10 21 0.23
11 15 0.16
12 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
ATAATTTTT
Found at i:64909042 original size:20 final size:19
Alignment explanation
Indices: 64909002--64909172 Score: 92
Period size: 20 Copynumber: 8.9 Consensus size: 19
64908992 TTTTGGTACA
64909002 ATAATTTT-TATAATTTTTTT
1 ATAATTTTATAT-A-TTTTTT
64909022 ATGAATTTTATATATTTTTT
1 AT-AATTTTATATATTTTTT
*
64909042 A-ATTTTTATA-ATTTTCTT
1 ATAATTTTATATATTTT-TT
**
64909060 ACT-ATTTTATA-AAATTTT
1 A-TAATTTTATATATTTTTT
*
64909078 ATAATTTT-TGCATTTTTTTT
1 ATAATTTTAT--ATATTTTTT
* *
64909098 ATAATTTT-TAAATTTTTA
1 ATAATTTTATATATTTTTT
*
64909116 ATAAATTTTA-ACTCTTTTTT
1 AT-AATTTTATA-TATTTTTT
*
64909136 ATTAAAATTTA-ATATTTTTT
1 A-T-AATTTTATATATTTTTT
*
64909156 A-AATTTTATTTATTTTT
1 ATAATTTTATATATTTTT
64909173 ATTTTATATT
Statistics
Matches: 120, Mismatches: 17, Indels: 30
0.72 0.10 0.18
Matches are distributed among these distances:
17 13 0.11
18 34 0.28
19 18 0.15
20 36 0.30
21 16 0.13
22 3 0.03
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (19 bp):
ATAATTTTATATATTTTTT
Found at i:64909046 original size:38 final size:38
Alignment explanation
Indices: 64909003--64909114 Score: 124
Period size: 38 Copynumber: 3.0 Consensus size: 38
64908993 TTTGGTACAA
*
64909003 TAATTTTTATAATTTTTTTA-TGAATTTTATATATTTTT
1 TAATTTTTATAATTTTTTTACT-AATTTTATAAATTTTT
* *
64909041 TAATTTTTATAATTTTCTTACT-ATTTTATAAAATTTTA
1 TAATTTTTATAATTTTTTTACTAATTTTAT-AAATTTTT
** *
64909079 TAATTTTTGCATTTTTTTTA-TAATTTT-TAAATTTTT
1 TAATTTTTATAATTTTTTTACTAATTTTATAAATTTTT
64909115 AATAAATTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
36 7 0.11
37 9 0.14
38 46 0.73
39 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (38 bp):
TAATTTTTATAATTTTTTTACTAATTTTATAAATTTTT
Found at i:64909115 original size:47 final size:46
Alignment explanation
Indices: 64909002--64909125 Score: 119
Period size: 47 Copynumber: 2.6 Consensus size: 46
64908992 TTTTGGTACA
* *
64909002 ATAATTTTTATAATTTTTTTATGAATTTTATATATTTTTTAATTTTT
1 ATAATTTTTA-AATTTTTATATAAATTTTATATATTTTTTAATTTTT
* * **
64909049 ATAATTTTCTTACTATTTTATA-AAATTTTATA-ATTTTTGCATTTTTTTT
1 ATAATTTT-TAAAT-TTTTATATAAATTTTATATATTTTT---TAATTTTT
64909098 ATAATTTTTAAATTTTTA-ATAAATTTTA
1 ATAATTTTTAAATTTTTATATAAATTTTA
64909126 ACTCTTTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
46 7 0.11
47 32 0.51
48 10 0.16
49 14 0.22
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (46 bp):
ATAATTTTTAAATTTTTATATAAATTTTATATATTTTTTAATTTTT
Found at i:64909134 original size:21 final size:20
Alignment explanation
Indices: 64909110--64909157 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
64909100 AATTTTTAAA
* *
64909110 TTTTTAATAAATTTTAACTCT
1 TTTTTAATAAAATTTAA-TAT
*
64909131 TTTTTATTAAAATTTAATAT
1 TTTTTAATAAAATTTAATAT
64909151 TTTTTAA
1 TTTTTAA
64909158 ATTTTATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTAATAAAATTTAATAT
Found at i:64911002 original size:51 final size:51
Alignment explanation
Indices: 64910947--64911066 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 51
64910937 GCCCTCAAAG
* *
64910947 TTTACACATTCTATCAATTTG-TTATTGATTTAACAAATTTAACTCACAACA
1 TTTACACATTCTATCAATTTGATCA-TGATTTAACAAATTTAACCCACAACA
* * * *
64910998 TTTACACATT-TCGTCAATTTGATCATGATTTAACATATTTAACCCATAATA
1 TTTACACATTCT-ATCAATTTGATCATGATTTAACAAATTTAACCCACAACA
*
64911049 ATTACACATTCTATCAAT
1 TTTACACATTCTATCAAT
64911067 ATTTACGCGA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
50 1 0.02
51 54 0.93
52 3 0.05
ACGTcount: A:0.37, C:0.18, G:0.04, T:0.41
Consensus pattern (51 bp):
TTTACACATTCTATCAATTTGATCATGATTTAACAAATTTAACCCACAACA
Found at i:64919403 original size:30 final size:30
Alignment explanation
Indices: 64919367--64919427 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
64919357 TAGGAATCCC
64919367 AAGTCACCATAATTAGGTGATGAGGATGGT
1 AAGTCACCATAATTAGGTGATGAGGATGGT
64919397 AAGTCACCATAATTAGGTGATGAGGATGGT
1 AAGTCACCATAATTAGGTGATGAGGATGGT
64919427 A
1 A
64919428 CTTAACTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (30 bp):
AAGTCACCATAATTAGGTGATGAGGATGGT
Found at i:64921080 original size:19 final size:19
Alignment explanation
Indices: 64921056--64921093 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
64921046 AAATATTAAT
64921056 TTTTTTTAATTTTAAAATA
1 TTTTTTTAATTTTAAAATA
*
64921075 TTTTTTTATTTTTAAAATA
1 TTTTTTTAATTTTAAAATA
64921094 AATTTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTTTAATTTTAAAATA
Found at i:64921099 original size:19 final size:19
Alignment explanation
Indices: 64921058--64921100 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
64921048 ATATTAATTT
**
64921058 TTTTTAATTTTAAAATATT
1 TTTTTAATTTTAAAATAAA
*
64921077 TTTTTATTTTTAAAATAAA
1 TTTTTAATTTTAAAATAAA
64921096 TTTTT
1 TTTTT
64921101 GGTGTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTAATTTTAAAATAAA
Found at i:64923607 original size:117 final size:117
Alignment explanation
Indices: 64923400--64923638 Score: 379
Period size: 117 Copynumber: 2.0 Consensus size: 117
64923390 AACAGGTGTC
* *
64923400 CGAAATGGAACATAAATATGACAAGACAACCACGGCTCTTCAAGAACTCGTTGATGGCCTTGTAG
1 CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
* *
64923465 CGAAAATTGACTCCAAGGACAGTAGTTTGCGGGATTGGGAGCTTCGATATAA
66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
* ** * * * *
64923517 GGAAATGGAACATAAATATGATGAGACGACCGCAGCTCTTCAAGGACTCGTCGATGGTCTTGTAG
1 CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
64923582 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
64923634 CGAAA
1 CGAAA
64923639 CCGTGAGACA
Statistics
Matches: 110, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
117 110 1.00
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (117 bp):
CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
Found at i:64925535 original size:21 final size:21
Alignment explanation
Indices: 64925511--64925551 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
64925501 ACTTACCTTC
64925511 AAAATGCATAAAAAAATATTG
1 AAAATGCATAAAAAAATATTG
64925532 AAAATGCATAAAAAAATATT
1 AAAATGCATAAAAAAATATT
64925552 ATCAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.24
Consensus pattern (21 bp):
AAAATGCATAAAAAAATATTG
Found at i:64926080 original size:11 final size:10
Alignment explanation
Indices: 64926055--64926172 Score: 53
Period size: 9 Copynumber: 12.8 Consensus size: 10
64926045 TTTTGGTACA
64926055 ATAA-TTTTT
1 ATAATTTTTT
64926064 ATAATTTTTT
1 ATAATTTTTT
64926074 ATGAA--TTTT
1 AT-AATTTTTT
*
64926083 AT-ATATTTT
1 ATAATTTTTT
64926092 -TAA--TTTT
1 ATAATTTTTT
*
64926099 ATAATTTTCT
1 ATAATTTTTT
* *
64926109 -TACTATTTT
1 ATAATTTTTT
**
64926118 ATAAAATTTT
1 ATAATTTTTT
**
64926128 ATAATTTTGC
1 ATAATTTTTT
64926138 AT--TTTTTT
1 ATAATTTTTT
64926146 ATAA-TTTTT
1 ATAATTTTTT
*
64926155 A-AATTTTTA
1 ATAATTTTTT
64926164 ATAAATTTT
1 AT-AATTTT
64926173 AACTCTTTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
7 5 0.06
8 12 0.15
9 32 0.39
10 25 0.30
11 8 0.10
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.63
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:64926084 original size:19 final size:18
Alignment explanation
Indices: 64926055--64926173 Score: 93
Period size: 18 Copynumber: 6.5 Consensus size: 18
64926045 TTTTGGTACA
64926055 ATAATTTTTATAATTTTTT
1 ATAA-TTTTATAATTTTTT
*
64926074 ATGAATTTTAT-ATATTTT
1 AT-AATTTTATAATTTTTT
64926092 -TAATTTTATAATTTTCTT
1 ATAATTTTATAATTTT-TT
**
64926110 ACT-ATTTTATAAAATTTT
1 A-TAATTTTATAATTTTTT
** *
64926128 ATAATTTTGCATTTTTTT
1 ATAATTTTATAATTTTTT
*
64926146 ATAATTTT-TAAATTTTTA
1 ATAATTTTAT-AATTTTTT
64926164 ATAAATTTTA
1 AT-AATTTTA
64926174 ACTCTTTTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
16 8 0.10
17 6 0.08
18 37 0.47
19 25 0.32
20 3 0.04
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.62
Consensus pattern (18 bp):
ATAATTTTATAATTTTTT
Found at i:64926103 original size:35 final size:34
Alignment explanation
Indices: 64926060--64926165 Score: 117
Period size: 35 Copynumber: 3.0 Consensus size: 34
64926050 GTACAATAAT
*
64926060 TTTTATAATTTTTTATGAATTTTATATATTTTTAA
1 TTTTATAATTTTTTAT-AATTTTATAAATTTTTAA
64926095 TTTTATAATTTTCTTACT-ATTTTATAAAATTTTATAA
1 TTTTATAATTTT-TTA-TAATTTTAT-AAATTTT-TAA
** *
64926132 TTTTGCATTTTTTTATAATTTT-TAAATTTTTAA
1 TTTTATAATTTTTTATAATTTTATAAATTTTTAA
64926165 T
1 T
64926166 AAATTTTAAC
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
33 4 0.06
34 7 0.11
35 21 0.34
36 17 0.27
37 13 0.21
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (34 bp):
TTTTATAATTTTTTATAATTTTATAAATTTTTAA
Found at i:64926105 original size:8 final size:8
Alignment explanation
Indices: 64926055--64926165 Score: 57
Period size: 8 Copynumber: 12.6 Consensus size: 8
64926045 TTTTGGTACA
64926055 ATAATTTTT
1 ATAA-TTTT
64926064 ATAATTTTTT
1 ATAA--TTTT
64926074 ATGAATTTT
1 AT-AATTTT
64926083 ATATATTTT
1 ATA-ATTTT
64926092 -TAATTTT
1 ATAATTTT
64926099 ATAATTTT
1 ATAATTTT
*
64926107 CTTACTATTTT
1 -ATA--ATTTT
64926118 ATAAAATTTT
1 AT--AATTTT
64926128 ATAATTTT
1 ATAATTTT
**
64926136 GCATTTTTTT
1 --ATAATTTT
64926146 ATAATTTT
1 ATAATTTT
64926154 -TAAATTTT
1 AT-AATTTT
64926162 -TAAT
1 ATAAT
64926166 AAATTTTAAC
Statistics
Matches: 84, Mismatches: 6, Indels: 26
0.72 0.05 0.22
Matches are distributed among these distances:
7 9 0.11
8 29 0.35
9 17 0.20
10 21 0.25
11 7 0.08
12 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (8 bp):
ATAATTTT
Found at i:64926209 original size:15 final size:15
Alignment explanation
Indices: 64926185--64926232 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
64926175 CTCTTTTTTA
*
64926185 TTAAAATTTATATTT
1 TTAAATTTTATATTT
64926200 TTAAATTTTATTTATTT
1 TTAAATTTTA--TATTT
*
64926217 TT-ATTTTTATATTT
1 TTAAATTTTATATTT
64926231 TT
1 TT
64926233 TCTACATATC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 7 0.24
15 9 0.31
16 6 0.21
17 7 0.24
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTAAATTTTATATTT
Found at i:64928039 original size:51 final size:51
Alignment explanation
Indices: 64927984--64928103 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 51
64927974 GCCCTCAAAG
* *
64927984 TTTACACATTCTATCAATTTG-TTATTGATTTAACAAATTTAACTCACAACA
1 TTTACACATTCTATCAATTTGATCA-TGATTTAACAAATTTAACCCACAACA
* * * *
64928035 TTTACACATT-TCGTCAATTTGATCATGATTTAACATATTTAACCCATAATA
1 TTTACACATTCT-ATCAATTTGATCATGATTTAACAAATTTAACCCACAACA
*
64928086 ATTACACATTCTATCAAT
1 TTTACACATTCTATCAAT
64928104 ATTTACGCGA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
50 1 0.02
51 54 0.93
52 3 0.05
ACGTcount: A:0.37, C:0.18, G:0.04, T:0.41
Consensus pattern (51 bp):
TTTACACATTCTATCAATTTGATCATGATTTAACAAATTTAACCCACAACA
Found at i:64936238 original size:28 final size:29
Alignment explanation
Indices: 64936189--64936243 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 29
64936179 TAGGAATCCC
64936189 AAGTCCCATAATTAGGTGATGAGGATGGT
1 AAGTCCCATAATTAGGTGATGAGGATGGT
64936218 AAGTCACCATAA-TA-GTGATGAGGATG
1 AAGTC-CCATAATTAGGTGATGAGGATG
64936244 TACTTAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 12 0.48
29 7 0.28
30 6 0.24
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (29 bp):
AAGTCCCATAATTAGGTGATGAGGATGGT
Found at i:64937822 original size:18 final size:18
Alignment explanation
Indices: 64937801--64937836 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
64937791 TAATATTAAT
64937801 TTTTTTAATTTTAAAATA
1 TTTTTTAATTTTAAAATA
*
64937819 TTTTTTATTTTTAAAATA
1 TTTTTTAATTTTAAAATA
64937837 AATTTTGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTTAATTTTAAAATA
Found at i:64937842 original size:18 final size:18
Alignment explanation
Indices: 64937803--64937842 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
64937793 ATATTAATTT
**
64937803 TTTTAATTTTAAAATATT
1 TTTTAATTTTAAAATAAA
*
64937821 TTTTATTTTTAAAATAAA
1 TTTTAATTTTAAAATAAA
64937839 TTTT
1 TTTT
64937843 GGTGTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAATTTTAAAATAAA
Found at i:64940327 original size:116 final size:117
Alignment explanation
Indices: 64940121--64940358 Score: 370
Period size: 116 Copynumber: 2.0 Consensus size: 117
64940111 AACAGGTGTC
* *
64940121 CGAAATGGAACATAAATATGACAAGACAACCACGGCTCTTCAAGAACTCGTTGATGGCCTTGTAG
1 CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
* *
64940186 CGAAAATTGACTCCAAGGACAGTAGTTTGCGGGATTGGGAGCTTCGATATAA
66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
* ** * * * *
64940238 GGAAATGGAACATAAATATGATGAGACGACCGCAGCTCTTC-AGGACTCGTCGATGGTCTTGTAG
1 CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
64940302 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
66 AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
64940354 CGAAA
1 CGAAA
64940359 CCGTGAGACA
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
116 74 0.68
117 35 0.32
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (117 bp):
CGAAATGGAACATAAATATGACAAGACAACCACAGCTCTTCAAGAACTCGTCGATGGCCTTGTAG
AGAAAATTGACTCCAAGGACAGTAGTTTACGGGATTGGGAGCTTCGATATAA
Found at i:64942256 original size:20 final size:21
Alignment explanation
Indices: 64942231--64942270 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
64942221 ACTTACCTTC
64942231 AAAATGCAT-AAAAAATATTG
1 AAAATGCATAAAAAAATATTG
64942251 AAAATGCATAAAAAAATATT
1 AAAATGCATAAAAAAATATT
64942271 ATCAAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (21 bp):
AAAATGCATAAAAAAATATTG
Found at i:64942789 original size:9 final size:9
Alignment explanation
Indices: 64942775--64942894 Score: 90
Period size: 9 Copynumber: 13.1 Consensus size: 9
64942765 TTTTGGTACA
64942775 ATAATTTTT
1 ATAATTTTT
64942784 ATAATTTTTT
1 ATAA-TTTTT
64942794 ATGAA-TTTT
1 AT-AATTTTT
64942803 AT-ATATTTT
1 ATAAT-TTTT
64942812 -TAATTTTT
1 ATAATTTTT
64942820 ATAATTTTCT
1 ATAATTTT-T
*
64942830 -TACTATTTT
1 ATAAT-TTTT
*
64942839 ATAAATTTT
1 ATAATTTTT
64942848 ATAATTTTT
1 ATAATTTTT
*
64942857 GCAT-TTTTTT
1 --ATAATTTTT
64942867 ATAATTTTT
1 ATAATTTTT
64942876 A-AATTTTT
1 ATAATTTTT
*
64942884 AATAAATTTT
1 -ATAATTTTT
64942894 A
1 A
64942895 ACTCTTTTTT
Statistics
Matches: 90, Mismatches: 7, Indels: 28
0.72 0.06 0.22
Matches are distributed among these distances:
7 1 0.01
8 14 0.16
9 47 0.52
10 24 0.27
11 4 0.04
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:64942804 original size:19 final size:18
Alignment explanation
Indices: 64942775--64942894 Score: 81
Period size: 19 Copynumber: 6.5 Consensus size: 18
64942765 TTTTGGTACA
64942775 ATAATTTTTATAATTTTTT
1 ATAA-TTTTATAATTTTTT
64942794 ATGAATTTTAT-ATATTTTT
1 AT-AATTTTATAAT-TTTTT
*
64942813 A-ATTTTTATAATTTTCTT
1 ATAATTTTATAATTTT-TT
*
64942831 ACT-ATTTTATAA-ATTTT
1 A-TAATTTTATAATTTTTT
*
64942848 ATAATTTT-TGCATTTTTTT
1 ATAATTTTAT--AATTTTTT
*
64942867 ATAATTTT-TAAATTTTTA
1 ATAATTTTAT-AATTTTTT
64942885 ATAAATTTTA
1 AT-AATTTTA
64942895 ACTCTTTTTT
Statistics
Matches: 81, Mismatches: 8, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
16 2 0.02
17 18 0.22
18 18 0.22
19 41 0.51
20 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.63
Consensus pattern (18 bp):
ATAATTTTATAATTTTTT
Found at i:64942823 original size:36 final size:35
Alignment explanation
Indices: 64942776--64942886 Score: 136
Period size: 36 Copynumber: 3.1 Consensus size: 35
64942766 TTTGGTACAA
*
64942776 TAATTTTTATAATTTTTTATGAATTTTATATATTTT
1 TAATTTTTATAATTTTTTAT-AATTTTATAAATTTT
64942812 TAATTTTTATAATTTTCTTACT-ATTTTATAAATTTT
1 TAATTTTTATAATTTT-TTA-TAATTTTATAAATTTT
** *
64942848 ATAATTTTTGCATTTTTTTATAATTTT-TAAATTTT
1 -TAATTTTTATAATTTTTTATAATTTTATAAATTTT
64942883 TAAT
1 TAAT
64942887 AAATTTTAAC
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
34 4 0.06
35 9 0.13
36 37 0.55
37 16 0.24
38 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (35 bp):
TAATTTTTATAATTTTTTATAATTTTATAAATTTT
Found at i:64942855 original size:64 final size:62
Alignment explanation
Indices: 64942775--64942955 Score: 165
Period size: 64 Copynumber: 2.8 Consensus size: 62
64942765 TTTTGGTACA
*
64942775 ATAATTTTTATAATTTTTTATGAATTTTATATATTTTTAATTTTTATAATTTT-CTTACTATTTT
1 ATAAATTTTATAATTTTTTAT-AATTTTATATATTTTTAATTTTTATAATTTTAC-T-CTATTTT
* ** *
64942839 ATAAATTTTATAATTTTTGCATTTTTTTATA-ATTTTTAAATTTTTAATAAATTTTAACTCTTTT
1 ATAAATTTTATAATTTTT-TATAATTTTATATATTTTT-AATTTTT-AT-AATTTT-ACTCTATT
64942903 TT
61 TT
* * *
64942905 ATTAAAATTTA-ATATTTTTTA-AATTTTATTTATTTTT-ATTTTTATATTTTT
1 A-TAAATTTTATA-ATTTTTTATAATTTTATATATTTTTAATTTTTATAATTTT
64942956 TCTACATATC
Statistics
Matches: 97, Mismatches: 11, Indels: 20
0.76 0.09 0.16
Matches are distributed among these distances:
62 5 0.05
63 8 0.08
64 37 0.38
65 10 0.10
66 21 0.22
67 15 0.15
68 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (62 bp):
ATAAATTTTATAATTTTTTATAATTTTATATATTTTTAATTTTTATAATTTTACTCTATTTT
Found at i:64942905 original size:21 final size:20
Alignment explanation
Indices: 64942879--64942926 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
64942869 AATTTTTAAA
* *
64942879 TTTTTAATAAATTTTAACTCT
1 TTTTTAATAAAATTTAA-TAT
*
64942900 TTTTTATTAAAATTTAATAT
1 TTTTTAATAAAATTTAATAT
64942920 TTTTTAA
1 TTTTTAA
64942927 ATTTTATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTAATAAAATTTAATAT
Found at i:64945642 original size:42 final size:43
Alignment explanation
Indices: 64945578--64945663 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 43
64945568 ACTAGTTTAG
* *
64945578 AGAAAGTTACTAGATCAATTAACTC-GGAATTGATACAAATCA
1 AGAAAATTACTAGATCAATTAACTCGGGAATTAATACAAATCA
*
64945620 AGAAAATTACTAGA-CAAGTTAACTCGGGATTTAATACAAATCA
1 AGAAAATTACTAGATCAA-TTAACTCGGGAATTAATACAAATCA
64945663 A
1 A
64945664 TTGAACCGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
41 3 0.08
42 20 0.51
43 16 0.41
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (43 bp):
AGAAAATTACTAGATCAATTAACTCGGGAATTAATACAAATCA
Found at i:64945720 original size:11 final size:11
Alignment explanation
Indices: 64945704--64945742 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
64945694 GTAGAATTTT
64945704 TTATTTTTTAA
1 TTATTTTTTAA
64945715 TTA-TTTTTAA
1 TTATTTTTTAA
*
64945725 TTATTTATTAA
1 TTATTTTTTAA
64945736 TTTATTT
1 -TTATTT
64945743 AATCAAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 10 0.40
11 9 0.36
12 6 0.24
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTTTTTAA
Found at i:64945738 original size:18 final size:19
Alignment explanation
Indices: 64945698--64945738 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
64945688 AACTGAGTAG
* *
64945698 AATTTTTTATTTTTTAATT
1 AATTTTTAATTATTTAATT
64945717 -ATTTTTAATTATTT-ATT
1 AATTTTTAATTATTTAATT
64945734 AATTT
1 AATTT
64945739 ATTTAATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTAATTATTTAATT
Found at i:64952067 original size:16 final size:18
Alignment explanation
Indices: 64952041--64952074 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
64952031 GTCTATATTA
64952041 TTTATAAATTTTA-ATTT
1 TTTATAAATTTTAGATTT
64952058 TTTA-AAATTTTAGATTT
1 TTTATAAATTTTAGATTT
64952075 AAACTCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTATAAATTTTAGATTT
Found at i:64964302 original size:43 final size:45
Alignment explanation
Indices: 64964255--64964350 Score: 133
Period size: 43 Copynumber: 2.2 Consensus size: 45
64964245 ATGCTGTATG
* * * *
64964255 TATAAATAATTAATAATAAATATTAT-TAA-TTAGTTAAAATTAA
1 TATAAATAACTAATAATAAATAGTATGCAACTTAGTCAAAATTAA
64964298 TATAAATAACTAATAATAAATAGTATGCAACTTAGTCAAAATTAA
1 TATAAATAACTAATAATAAATAGTATGCAACTTAGTCAAAATTAA
*
64964343 AATAAATA
1 TATAAATA
64964351 GTTTTTAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 24 0.52
44 2 0.04
45 20 0.43
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (45 bp):
TATAAATAACTAATAATAAATAGTATGCAACTTAGTCAAAATTAA
Found at i:64967632 original size:20 final size:20
Alignment explanation
Indices: 64967607--64967653 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
64967597 GATATTTGTT
64967607 TTTATATTGATATT-ACTA-TA
1 TTTATATT-ATATTGA-TATTA
64967627 TTTATATTATATTGATATTA
1 TTTATATTATATTGATATTA
64967647 TTTATAT
1 TTTATAT
64967654 CTTTCTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTATATTATATTGATATTA
Found at i:64970763 original size:13 final size:13
Alignment explanation
Indices: 64970745--64970771 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64970735 TCGTATAACT
64970745 TTTAATCGAATCA
1 TTTAATCGAATCA
64970758 TTTAATCGAATCA
1 TTTAATCGAATCA
64970771 T
1 T
64970772 CAATTCAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TTTAATCGAATCA
Found at i:64984123 original size:19 final size:20
Alignment explanation
Indices: 64984083--64984126 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
64984073 GTCTCTTTAG
* *
64984083 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
64984102 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
64984121 GCATTA
1 GCATTA
64984127 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:64986759 original size:25 final size:25
Alignment explanation
Indices: 64986712--64986759 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64986702 AAAACAAGGG
*
64986712 AAAAGAAAAAAATAAAATCAAAATC
1 AAAAGAAAAAAATAAAAACAAAATC
* *
64986737 AAAATAAAAAAATAAAAAGAAAA
1 AAAAGAAAAAAATAAAAACAAAA
64986760 AGAGAAATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.10
Consensus pattern (25 bp):
AAAAGAAAAAAATAAAAACAAAATC
Found at i:64988523 original size:44 final size:44
Alignment explanation
Indices: 64988474--64988700 Score: 156
Period size: 44 Copynumber: 5.2 Consensus size: 44
64988464 AGTTAAAGAT
64988474 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
* * * *** ** * * * * *
64988518 CTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTCCTAC-ATTAACAGCGAAGCAGATCGAAGACACAA-AC
64988562 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
* * * *** ** * * * * *
64988606 CTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTCCTAC-ATTAACAGCGAAGCAGATCGAAGACACAA-AC
64988650 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
64988694 CTTGCCT
1 CTTGCCT
64988701 CTTTCGGTTG
Statistics
Matches: 123, Mismatches: 52, Indels: 16
0.64 0.27 0.08
Matches are distributed among these distances:
43 36 0.29
44 51 0.41
45 36 0.29
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAAC
Found at i:64988617 original size:88 final size:88
Alignment explanation
Indices: 64988468--64989085 Score: 822
Period size: 88 Copynumber: 7.0 Consensus size: 88
64988458 CAATGAAGTT
64988468 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
64988533 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
64988556 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
64988621 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
64988644 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
64988709 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
*
64988732 AAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 AAAGATCTTGCCTT-C--C--T-ACA-TTAA-CAGCGAAGCAGATCGAAGACACAAACCTTGCCT
64988797 CTTTCGGTTGTGATAGAGCTGGTTGAAGACA
58 CTTTCGGTTGTGATAGAGCTGGTTGAAGACA
* * * * * *
64988828 AAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTACCTCTCTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
*
64988893 TGT-AGTAGAGCTGGTTAAAGA-A
66 TGTGA-TAGAGCTGGTTGAAGACA
** * * *
64988915 GCAGATCTTGCCTTCCTACGTTAACAGCAAAGCAGATCGAA-A-ACAAAGCCTTGCCTCTCTCGA
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCG-
*
64988978 G-TGTAGA-AGAGTTGGTTGAAGACA
64 GTTGT-GATAGAGCTGGTTGAAGACA
** * * * * * * * * *
64989002 ACTGATTTTGTCTTCCTGCGTTGACAGTGAAGCAGGTCGAAG--ACAAACCTTACCTCTCTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
*
64989065 TGT-AGTGGAGCTGGTTGAAGA
66 TGTGA-TAGAGCTGGTTGAAGA
64989086 ATTACAGATC
Statistics
Matches: 480, Mismatches: 32, Indels: 38
0.87 0.06 0.07
Matches are distributed among these distances:
84 1 0.00
85 6 0.01
86 59 0.12
87 74 0.15
88 246 0.51
89 3 0.01
90 2 0.00
91 2 0.00
93 2 0.00
94 3 0.01
95 4 0.01
96 78 0.16
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (88 bp):
AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
TGTGATAGAGCTGGTTGAAGACA
Found at i:64988894 original size:184 final size:177
Alignment explanation
Indices: 64988468--64989085 Score: 826
Period size: 184 Copynumber: 3.5 Consensus size: 177
64988458 CAATGAAGTT
* *
64988468 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGT
64988533 TGT-GATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACA-TTAACAGCGAAGCAGATCGA
66 TGTAG-TAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACAGTTAACAGCGAAGCAGATCGA
64988596 AGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACA
130 AGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACA
* *
64988644 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGT
*
64988709 TGT-GATAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGCGAAGC
66 TGTAG-TAGAGCTGGTTGAAGACAAAAGATCTTGCCTT-C--C--T-ACAGTTAA-CAGCGAAGC
64988773 AGATCGAAGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACA
123 AGATCGAAGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACA
* * * *
64988828 AAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTACCTCTCTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGT
* ** *
64988893 TGTAGTAGAGCTGGTTAAAGA-AGCAGATCTTGCCTTCCTAC-GTTAACAGCAAAGCAGATCGAA
66 TGTAGTAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACAGTTAACAGCGAAGCAGATCGAA
* *
64988956 -A-ACAAAGCCTTGCCTCTCTCGAG-TGTAGA-AGAGTTGGTTGAAGACA
131 GACACAAA-CCTTGCCTCTTTCG-GTTGT-GATAGAGCTGGTTGAAGACA
** * * * * * * *
64989002 ACTGATTTTGTCTTCCTGCGTTGACAGTGAAGCAGGTCGAAG--ACAAACCTTACCTCTCTCGGT
1 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGT
*
64989065 TGTAGTGGAGCTGGTTGAAGA
66 TGTAGTAGAGCTGGTTGAAGA
64989086 ATTACAGATC
Statistics
Matches: 409, Mismatches: 21, Indels: 28
0.89 0.05 0.06
Matches are distributed among these distances:
172 40 0.10
173 5 0.01
174 70 0.17
175 19 0.05
176 106 0.26
177 3 0.01
178 1 0.00
179 1 0.00
180 1 0.00
181 1 0.00
182 4 0.01
183 16 0.04
184 141 0.34
185 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (177 bp):
AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGT
TGTAGTAGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACAGTTAACAGCGAAGCAGATCGAA
GACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACA
Found at i:64989058 original size:86 final size:87
Alignment explanation
Indices: 64988768--64989085 Score: 376
Period size: 87 Copynumber: 3.7 Consensus size: 87
64988758 GTGAAGCAGC
* * *
64988768 GAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTGT-GATAGAGCTGGTTGAAGACAAAAG
1 GAAGCAGATCGAAGA-ACAAACCTTACCTCTCTCGGTTGTAGA-AGAGCTGGTTGAAGACAACAG
*
64988832 ATCTTGCCTTCCTGCATTGACAGT
64 ATCTTGCCTTCCTGCGTTGACAGT
* * * *
64988856 GAAGCAGGTCGAAGACACAAACCTTACCTCTCTCGGTTGTAGTAGAGCTGGTTAAAGA-AGCAGA
1 GAAGCAGATCGAAGA-ACAAACCTTACCTCTCTCGGTTGTAGAAGAGCTGGTTGAAGACAACAGA
* * *
64988920 TCTTGCCTTCCTACGTTAACAGC
65 TCTTGCCTTCCTGCGTTGACAGT
* * * *
64988943 AAAGCAGATCGAA-AACAAAGCCTTGCCTCTCTCGAG-TGTAGAAGAGTTGGTTGAAGACAACTG
1 GAAGCAGATCGAAGAACAAA-CCTTACCTCTCTCG-GTTGTAGAAGAGCTGGTTGAAGACAACAG
* *
64989006 ATTTTGTCTTCCTGCGTTGACAGT
64 ATCTTGCCTTCCTGCGTTGACAGT
* **
64989030 GAAGCAGGTCGAAG-ACAAACCTTACCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGA
1 GAAGCAGATCGAAGAACAAACCTTACCTCTCTCGGTTGTAGAAGAGCTGGTTGAAGA
64989086 ATTACAGATC
Statistics
Matches: 194, Mismatches: 30, Indels: 14
0.82 0.13 0.06
Matches are distributed among these distances:
85 6 0.03
86 63 0.32
87 73 0.38
88 51 0.26
89 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (87 bp):
GAAGCAGATCGAAGAACAAACCTTACCTCTCTCGGTTGTAGAAGAGCTGGTTGAAGACAACAGAT
CTTGCCTTCCTGCGTTGACAGT
Found at i:64991089 original size:30 final size:30
Alignment explanation
Indices: 64990982--64991089 Score: 78
Period size: 30 Copynumber: 3.5 Consensus size: 30
64990972 ATTTTGTTAT
* * *
64990982 TACATACATA-TTTTAAAACATATACATATA
1 TACATACATATTTTTTATA-ATCTACATATA
64991012 TACATACATATCTATATTTTATAATCTACATATA
1 TACATACATA--T-T-TTTTATAATCTACATATA
* * *
64991046 T--ATGCATGCATTTTTTATTATCTTCATATA
1 TACATACAT--ATTTTTTATAATCTACATATA
64991076 TACATACATATTTT
1 TACATACATATTTT
64991090 AGGATATATA
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
30 32 0.52
31 1 0.02
32 11 0.18
34 13 0.21
35 5 0.08
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (30 bp):
TACATACATATTTTTTATAATCTACATATA
Found at i:65002272 original size:182 final size:182
Alignment explanation
Indices: 65001965--65002338 Score: 730
Period size: 182 Copynumber: 2.1 Consensus size: 182
65001955 TTCTGCAGAA
65001965 GTGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTAAAGA
1 GTGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTAAAGA
65002030 CCAGAGTCCCGTATCTTTAACCGGTGTCTGAAAAAACAAGTGAAAGTATTGTAAGAATAGAAGCT
66 CCAGAGTCCCGTATCTTTAACCGGTGTCTGAAAAAACAAGTGAAAGTATTGTAAGAATAGAAGCT
65002095 TTTAGAATCTTATAGAACTGAACTGTGTGTTGTATTGTAATGATACTTACCG
131 TTTAGAATCTTATAGAACTGAACTGTGTGTTGTATTGTAATGATACTTACCG
65002147 GTGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTAAAGA
1 GTGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTAAAGA
65002212 CCAGAGTCCCGTATCTTTAACCGGTGTCTGAAAAAACAAGTGAAAGTATTGTAAGAATAGAAGCT
66 CCAGAGTCCCGTATCTTTAACCGGTGTCTGAAAAAACAAGTGAAAGTATTGTAAGAATAGAAGCT
*
65002277 TTTAGAATCTTATAGAACTGAACTGTGTGTTGTATTGTAATGATACTTACTG
131 TTTAGAATCTTATAGAACTGAACTGTGTGTTGTATTGTAATGATACTTACCG
*
65002329 GTGTTTTCAT
1 GTGTCTTCAT
65002339 AGATGGGAAG
Statistics
Matches: 190, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
182 190 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (182 bp):
GTGTCTTCATTTACAAAAAGAGAAAACCAATTCAAGTCTCATCGTATATAGGTTCGGCCTAAAGA
CCAGAGTCCCGTATCTTTAACCGGTGTCTGAAAAAACAAGTGAAAGTATTGTAAGAATAGAAGCT
TTTAGAATCTTATAGAACTGAACTGTGTGTTGTATTGTAATGATACTTACCG
Found at i:65004438 original size:4 final size:4
Alignment explanation
Indices: 65004420--65004461 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
65004410 TCATGAATAT
* *
65004420 ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
65004462 TGTATCAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:65008722 original size:4 final size:4
Alignment explanation
Indices: 65008713--65008757 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
65008703 AAAATGATGG
*
65008713 TACA TACA TACA TACC TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
65008758 CAAATGAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:65021348 original size:3 final size:3
Alignment explanation
Indices: 65021340--65021406 Score: 55
Period size: 3 Copynumber: 22.3 Consensus size: 3
65021330 TCCCTTTTGT
* ** * * *
65021340 TTA TTA TTA TTA TTA TTA TTA TTA TCA TCG TTA TTA CTA CTA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
65021388 TTA TT- TATA TTA GTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
65021407 ACTAGTGTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
2 1 0.02
3 51 0.96
4 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:65026932 original size:16 final size:17
Alignment explanation
Indices: 65026911--65026960 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
65026901 GAATTGTAAC
*
65026911 TTCTAT-CTTTCAGTTT
1 TTCTATCCTTTCAATTT
65026927 TTCTATCCTTTCAA-TT
1 TTCTATCCTTTCAATTT
* *
65026943 TTCCATCTTTTCAATTT
1 TTCTATCCTTTCAATTT
65026960 T
1 T
65026961 CTTTCCATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 20 0.69
17 9 0.31
ACGTcount: A:0.16, C:0.22, G:0.02, T:0.60
Consensus pattern (17 bp):
TTCTATCCTTTCAATTT
Found at i:65029971 original size:11 final size:11
Alignment explanation
Indices: 65029955--65029980 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
65029945 TCAAAAATTC
65029955 ATAATAAAATA
1 ATAATAAAATA
65029966 ATAATAAAATA
1 ATAATAAAATA
65029977 ATAA
1 ATAA
65029981 GATCTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:65031412 original size:49 final size:49
Alignment explanation
Indices: 65031337--65031457 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 49
65031327 CATTAAGATT
* * *
65031337 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATTGCGTTGGCACCGAG
1 ATGAGAGGTCCCA-GTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
*
65031387 ATGAGAGGTCCCCA-TAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGT-CCCAGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
*
65031436 ATGAGA--ACCCATGTAAGACCAT
1 ATGAGAGGTCCCA-GTAAGACCAT
65031458 TTCTAGGATA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
46 4 0.06
48 9 0.14
49 37 0.59
50 9 0.14
51 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (49 bp):
ATGAGAGGTCCCAGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:65033014 original size:3 final size:3
Alignment explanation
Indices: 65033008--65033061 Score: 83
Period size: 3 Copynumber: 18.3 Consensus size: 3
65032998 TTTGTAAAAA
* *
65033008 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG TAG AAG TAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
65033056 AA- AAG A
1 AAG AAG A
65033062 CAATGTAAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:65040525 original size:40 final size:40
Alignment explanation
Indices: 65040479--65040592 Score: 141
Period size: 40 Copynumber: 3.0 Consensus size: 40
65040469 AACAATTAAT
65040479 ACAATTAACAATTAATAATTTTACTAACAAAATGTTAGTA
1 ACAATTAACAATTAATAATTTTACTAACAAAATGTTAGTA
* * *
65040519 ACAATTAATAATTAATAATTTGA-T-----AATTTTAGTA
1 ACAATTAACAATTAATAATTTTACTAACAAAATGTTAGTA
65040553 ACAATTAATACAATTAATAATTTTACTAACAAAATGTTAG
1 ACAATT-A-ACAATTAATAATTTTACTAACAAAATGTTAG
65040593 ATTTTACAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
34 15 0.25
35 1 0.02
36 14 0.23
37 1 0.02
39 1 0.02
40 21 0.35
42 7 0.12
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (40 bp):
ACAATTAACAATTAATAATTTTACTAACAAAATGTTAGTA
Found at i:65040576 original size:28 final size:27
Alignment explanation
Indices: 65040528--65040584 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
65040518 AACAATTAAT
* * *
65040528 AATTAATAATTTGATAATTTTAGTAAC
1 AATTAATAAATTAATAATTTTACTAAC
65040555 AATTAATACAATTAATAATTTTACTAAC
1 AATTAATA-AATTAATAATTTTACTAAC
65040583 AA
1 AA
65040585 AATGTTAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (27 bp):
AATTAATAAATTAATAATTTTACTAAC
Found at i:65040657 original size:16 final size:16
Alignment explanation
Indices: 65040638--65040694 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
65040628 AATTTGATAC
*
65040638 AATTTTAATAATAATT
1 AATTTTAATAACAATT
*
65040654 AATTTTGATAACAATT
1 AATTTTAATAACAATT
65040670 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
65040686 AGTTTTAAT
1 AATTTTAAT
65040695 TTTAATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:65040678 original size:22 final size:23
Alignment explanation
Indices: 65040668--65040729 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
65040658 TTGATAACAA
* *
65040668 TTAATTTTAATAACAAT-TAGTT
1 TTAATTTTAATAAAAATATAATT
65040690 TTAATTTTAATAAAAATATAATT
1 TTAATTTTAATAAAAATATAATT
65040713 TTAATTTTAATTAAAAA
1 TTAATTTTAA-TAAAAA
65040730 AGGGCCGGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 16 0.44
23 14 0.39
24 6 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAATATAATT
Found at i:65042869 original size:52 final size:49
Alignment explanation
Indices: 65042784--65043150 Score: 431
Period size: 46 Copynumber: 7.6 Consensus size: 49
65042774 TTTGAGTACT
* **
65042784 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
65042830 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
65042882 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
65042928 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
65042974 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
65043026 TCTGATCAAGTGACAAGTGAAAAGTGATAAATGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
65043078 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
65043124 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
65043151 GCTACACTTA
Statistics
Matches: 290, Mismatches: 17, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 132 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:65042904 original size:98 final size:97
Alignment explanation
Indices: 65042784--65043150 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
65042774 TTTGAGTACT
* *
65042784 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
65042849 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
65042882 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
65042942 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
65042974 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
*
65043039 CAAGTGAAAAGTGATAAATGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
65043078 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
65043143 GATAAGTG
65 GA-AAGTG
65043151 GCTACACTTA
Statistics
Matches: 239, Mismatches: 16, Indels: 27
0.85 0.06 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
96 1 0.00
98 145 0.61
99 10 0.04
101 1 0.00
104 40 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:65043132 original size:196 final size:196
Alignment explanation
Indices: 65042798--65043150 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
65042788 ATCAAGTGAT
* * * *
65042798 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAATA
* * * *
65042863 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
65042928 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
65042993 G
196 G
* *
65042994 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAATG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAATA
*
65043059 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
65043124 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
65043151 GCTACACTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAATA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:65043158 original size:37 final size:36
Alignment explanation
Indices: 65043114--65043222 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 36
65043104 GATAGCTTTA
65043114 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGA-ACAAAGTGATAAGTG
65043151 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAG-AACAAAGTGATAAGTG
65043188 GCTACACTTATCTGATCAAGAAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAACAAAGTGATAAGTG
65043223 ATCATACGTA
Statistics
Matches: 71, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
35 12 0.17
36 3 0.04
37 55 0.77
38 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.25
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGAACAAAGTGATAAGTG
Found at i:65049371 original size:28 final size:28
Alignment explanation
Indices: 65049331--65049387 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
65049321 GATTTTAAAT
65049331 TCTAGTATCTTAATATTCAAAGATCAAC
1 TCTAGTATCTTAATATTCAAAGATCAAC
65049359 TCTAGTATCTTAATATTCAAAGATCAAC
1 TCTAGTATCTTAATATTCAAAGATCAAC
65049387 T
1 T
65049388 TCGAGTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.37
Consensus pattern (28 bp):
TCTAGTATCTTAATATTCAAAGATCAAC
Found at i:65049574 original size:30 final size:29
Alignment explanation
Indices: 65049533--65049615 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 29
65049523 AAGTTTAAAA
65049533 TTTAGGTAATAGTTATATACGTATTAATATT
1 TTTAGGTAATAGTTATATAC-TA-TAATATT
65049564 TTTA-GTAATAGTTATATACTATAATATTAT
1 TTTAGGTAATAGTTATATACTATAATA-T-T
* * *
65049594 TTTATGTATTAGTAATATACTA
1 TTTAGGTAATAGTTATATACTA
65049616 ATTTAATTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
28 5 0.11
29 3 0.06
30 20 0.43
31 19 0.40
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (29 bp):
TTTAGGTAATAGTTATATACTATAATATT
Found at i:65049595 original size:31 final size:29
Alignment explanation
Indices: 65049533--65049615 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 29
65049523 AAGTTTAAAA
65049533 TTTAGGTAATAGTTATATACGTATTAATATT
1 TTTAGGTAATAGTTATATAC-TATTAATA-T
*
65049564 TTTA-GTAATAGTTATATACTATAATATTAT
1 TTTAGGTAATAGTTATATACTAT--TAATAT
* * *
65049594 TTTATGTATTAGTAATATACTA
1 TTTAGGTAATAGTTATATACTA
65049616 ATTTAATTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 3 0.07
30 20 0.43
31 23 0.50
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (29 bp):
TTTAGGTAATAGTTATATACTATTAATAT
Found at i:65050742 original size:18 final size:17
Alignment explanation
Indices: 65050721--65050763 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
65050711 TTTTTTATTT
* *
65050721 TATTTTTACATTTTTCTA
1 TATTTTTA-ACTTTTATA
65050739 TATTTTCTAACTTTTATA
1 TATTTT-TAACTTTTATA
65050757 TATTTTT
1 TATTTTT
65050764 TCCATTTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 19 0.86
19 2 0.09
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTTTAACTTTTATA
Found at i:65051121 original size:24 final size:25
Alignment explanation
Indices: 65051094--65051152 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 25
65051084 TCAAATTCGT
*
65051094 CATCATTCATGATCAAAACCACC-C
1 CATCATTCATCATCAAAACCACCAC
* *
65051118 CATCA-TCATCATCAACATCACCAC
1 CATCATTCATCATCAAAACCACCAC
65051142 CATCA-TCATCA
1 CATCATTCATCA
65051153 AAAACAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 14 0.45
24 17 0.55
ACGTcount: A:0.37, C:0.39, G:0.02, T:0.22
Consensus pattern (25 bp):
CATCATTCATCATCAAAACCACCAC
Found at i:65051158 original size:24 final size:23
Alignment explanation
Indices: 65051113--65051158 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
65051103 TGATCAAAAC
**
65051113 CACCCCATCATCATCATCAACAT
1 CACCCCATCATCATCAAAAACAT
65051136 CACCACCATCATCATCAAAAACA
1 CACC-CCATCATCATCAAAAACA
65051159 AAAAGATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (23 bp):
CACCCCATCATCATCAAAAACAT
Found at i:65053033 original size:21 final size:21
Alignment explanation
Indices: 65052977--65053034 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
65052967 TTAAACCCTG
* *
65052977 AAGGGTCCATGGTCCAAGGTC
1 AAGGGTCTAGGGTCCAAGGTC
*
65052998 -TGGGATCT-GGAGTCCAAGGTC
1 AAGGG-TCTAGG-GTCCAAGGTC
65053019 AAGGGTCTAGGGTCCA
1 AAGGGTCTAGGGTCCA
65053035 TAGTTCATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
20 4 0.14
21 20 0.69
22 5 0.17
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (21 bp):
AAGGGTCTAGGGTCCAAGGTC
Found at i:65060121 original size:125 final size:124
Alignment explanation
Indices: 65059906--65060141 Score: 357
Period size: 125 Copynumber: 1.9 Consensus size: 124
65059896 AAATCGCTTC
* **
65059906 TACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGTGGCCTCGTGAATGCGATTTCGCTACAGT
1 TACCAGGATGCTATATGAGAAGAAATTGTGAAATCGTACCCTCGTGAATGCGATTTCGCTACAGT
* *
65059971 GGTCATGTAAGAAATAATTTGTTTTTGACATTTTCTTAGCAAATAGTATAAAATTGCTGA
66 GGTCATGTAAGAAATAATTTGTTTTTGAC-GTTTCTGAGCAAATAGTATAAAATTGCTGA
* * * *
65060031 TACCAGGATGTTATATGAGAATAAATTGTGAAATCGTACCCTCGTGGATGCGATTTCGCTACAAT
1 TACCAGGATGCTATATGAGAAGAAATTGTGAAATCGTACCCTCGTGAATGCGATTTCGCTAC-AG
*
65060096 TGGTCATGTAGGAAATAATTT-TTTTTGACGTTTCTGAGCAAATAGT
65 TGGTCATGTAAGAAATAATTTGTTTTTGACGTTTCTGAGCAAATAGT
65060142 GTCAAATCGC
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
124 15 0.15
125 64 0.64
126 21 0.21
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.35
Consensus pattern (124 bp):
TACCAGGATGCTATATGAGAAGAAATTGTGAAATCGTACCCTCGTGAATGCGATTTCGCTACAGT
GGTCATGTAAGAAATAATTTGTTTTTGACGTTTCTGAGCAAATAGTATAAAATTGCTGA
Found at i:65064824 original size:14 final size:15
Alignment explanation
Indices: 65064807--65064840 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
65064797 AATAAATATC
65064807 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
65064821 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
65064836 TAAAA
1 TAAAA
65064841 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:65065068 original size:22 final size:22
Alignment explanation
Indices: 65065038--65065079 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
65065028 ATTTGGAGAT
*
65065038 TTTTTGAAGGAAAT-TGAGAGGA
1 TTTTGGAAGG-AATCTGAGAGGA
65065060 TTTTGGAAGGAATCTGAGAG
1 TTTTGGAAGGAATCTGAGAG
65065080 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.31
Consensus pattern (22 bp):
TTTTGGAAGGAATCTGAGAGGA
Found at i:65065086 original size:30 final size:30
Alignment explanation
Indices: 65065051--65065109 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
65065041 TTGAAGGAAA
*
65065051 TTGAGAGGATTTTGGAAGGAATCTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATCTGAGAGT
* *
65065081 TTGAGAGAATTTTTGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATCTGAGAG
65065110 AATTTTTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.02, G:0.34, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATCTGAGAGT
Found at i:65065108 original size:22 final size:22
Alignment explanation
Indices: 65065080--65065150 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
65065070 AATCTGAGAG
65065080 TTTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
65065102 TTTGAGAGAATTTTTGAACGGGA
1 TTTGAGAGAATTTTTGAA-GGAA
65065125 -TTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
65065146 ATTGA
1 TTTGA
65065151 TATTGAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.07
22 39 0.87
23 3 0.07
ACGTcount: A:0.35, C:0.01, G:0.28, T:0.35
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:65065367 original size:40 final size:40
Alignment explanation
Indices: 65065323--65065416 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 40
65065313 GCTTCCTCAA
65065323 GGACGCGATTTCCT-TCCACGT-CAG-CAGGTCGCGCTGACGT
1 GGACGCGATTTCCTGT-CACGTCCAGACA--TCGCGCTGACGT
* *
65065363 GGACGCGATGTCCTGTCACGTACCCTGACATCGCGCTGACGT
1 GGACGCGATTTCCTGTCACGT--CCAGACATCGCGCTGACGT
65065405 GGACGCGATTTC
1 GGACGCGATTTC
65065417 GCGGAAAATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
40 18 0.39
41 1 0.02
42 23 0.50
43 2 0.04
44 2 0.04
ACGTcount: A:0.16, C:0.32, G:0.30, T:0.22
Consensus pattern (40 bp):
GGACGCGATTTCCTGTCACGTCCAGACATCGCGCTGACGT
Found at i:65067572 original size:27 final size:26
Alignment explanation
Indices: 65067519--65067576 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
65067509 AGTACTGTTT
** *
65067519 TAACAAAGAAAAATATCAGAAGCAAC
1 TAACAAAGAAAAATAAAAGAAGAAAC
*
65067545 TAACCAAGAAAAATAAAAGAGAGAAAC
1 TAACAAAGAAAAATAAAAGA-AGAAAC
65067572 TAACA
1 TAACA
65067577 TGAACACAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.64, C:0.14, G:0.12, T:0.10
Consensus pattern (26 bp):
TAACAAAGAAAAATAAAAGAAGAAAC
Found at i:65069222 original size:17 final size:17
Alignment explanation
Indices: 65069200--65069233 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
65069190 ATATATTTTT
*
65069200 AATTAAATTTTTTTAAA
1 AATTAAATATTTTTAAA
*
65069217 AATTAACTATTTTTAAA
1 AATTAAATATTTTTAAA
65069234 CAAAAAAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATATTTTTAAA
Found at i:65090563 original size:25 final size:25
Alignment explanation
Indices: 65090529--65090579 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
65090519 ATCGATTCAA
*
65090529 TCGATTTTTAACTCGGTTCAATCGT
1 TCGATTTTTAACTCGGTTAAATCGT
*
65090554 TCGATTTTTAACTTGGTTAAATCGT
1 TCGATTTTTAACTCGGTTAAATCGT
65090579 T
1 T
65090580 TTCAAGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (25 bp):
TCGATTTTTAACTCGGTTAAATCGT
Found at i:65092527 original size:47 final size:45
Alignment explanation
Indices: 65092468--65092580 Score: 120
Period size: 47 Copynumber: 2.4 Consensus size: 45
65092458 TAAGAAAAAG
** * *
65092468 CCTTTCTTCAAAGCCATTTCTTTTTTTTTTATCCTTTAAAAAGAAA-C
1 CCTTT-TTCAAAGCCATTTC-TTCCTCTTTACCCTTTAAAAA-AAACC
*
65092515 CCTTTTTCCAAAGTCATTTCTTCCTCTTTACCCTTTAAAAAAAATCC
1 CCTTTTT-CAAAGCCATTTCTTCCTCTTTACCCTTTAAAAAAAA-CC
65092562 CCTTTTTTCAAAGCCATTT
1 CC-TTTTTCAAAGCCATTT
65092581 TTTGCTTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
45 3 0.05
46 19 0.34
47 29 0.52
48 5 0.09
ACGTcount: A:0.27, C:0.26, G:0.04, T:0.44
Consensus pattern (45 bp):
CCTTTTTCAAAGCCATTTCTTCCTCTTTACCCTTTAAAAAAAACC
Found at i:65095071 original size:21 final size:19
Alignment explanation
Indices: 65095039--65095079 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
65095029 TTTTTTAGAT
*
65095039 AATTATGTTTATTTTCTTTA
1 AATTAAGTTTATTTT-TTTA
65095059 AATTAAGTGTTATTTTTTTA
1 AATTAAGT-TTATTTTTTTA
65095079 A
1 A
65095080 CTTCATGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61
Consensus pattern (19 bp):
AATTAAGTTTATTTTTTTA
Done.