Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 223 of 228
Found at i:65846654 original size:24 final size:25
Alignment explanation
Indices: 65846622--65846675 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 25
65846612 TTTAGTAAAT
*
65846622 AATAAAAAAAG-TAATATTTTGGTA
1 AATAAAAAAAGTTAATATTTTGATA
65846646 AATAAAAAAAGTTATAATATTTTGATA
1 AATAAAAAAAG-T-TAATATTTTGATA
65846673 AAT
1 AAT
65846676 TTTTATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.42
27 15 0.58
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (25 bp):
AATAAAAAAAGTTAATATTTTGATA
Found at i:65846691 original size:18 final size:19
Alignment explanation
Indices: 65846665--65846700 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
65846655 AGTTATAATA
65846665 TTTTGATAA-ATTTTTATT
1 TTTTGATAATATTTTTATT
*
65846683 TTTTTATAATATTTTTAT
1 TTTTGATAATATTTTTAT
65846701 AAAAAACCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTGATAATATTTTTATT
Found at i:65846697 original size:11 final size:11
Alignment explanation
Indices: 65846657--65846702 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
65846647 ATAAAAAAAG
65846657 TTATAATATTT
1 TTATAATATTT
*
65846668 TGATAA-ATTT
1 TTATAATATTT
65846678 TTAT--T-TTT
1 TTATAATATTT
65846686 TTATAATATTT
1 TTATAATATTT
65846697 TTATAA
1 TTATAA
65846703 AAAACCCGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
8 7 0.24
10 8 0.28
11 14 0.48
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
TTATAATATTT
Found at i:65847754 original size:13 final size:14
Alignment explanation
Indices: 65847736--65847768 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
65847726 TTATTGAACC
*
65847736 AATTAGTCCAATT-
1 AATTAGACCAATTG
65847749 AATTAGACCAATTG
1 AATTAGACCAATTG
65847763 AATTAG
1 AATTAG
65847769 GAATCGGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (14 bp):
AATTAGACCAATTG
Found at i:65855061 original size:25 final size:25
Alignment explanation
Indices: 65855027--65855076 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
65855017 ACTGAGTTAA
65855027 GCATTAACTTCAGTCTGTTAAAGTC
1 GCATTAACTTCAGTCTGTTAAAGTC
65855052 GCATTAACTTCAGTCTGTTAAAGTC
1 GCATTAACTTCAGTCTGTTAAAGTC
65855077 TGTTGCTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (25 bp):
GCATTAACTTCAGTCTGTTAAAGTC
Found at i:65855283 original size:36 final size:36
Alignment explanation
Indices: 65855236--65855307 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
65855226 TTTCTTCTTT
*
65855236 GTATTCAAGATTTTATCTTTGATATAGGATCTAACA
1 GTATTCAAGATTTTATCTTTGATATAGAATCTAACA
65855272 GTATTCAAGATTTTATCTTTGATATAGAATCTAACA
1 GTATTCAAGATTTTATCTTTGATATAGAATCTAACA
65855308 TGGTATCAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (36 bp):
GTATTCAAGATTTTATCTTTGATATAGAATCTAACA
Found at i:65864122 original size:16 final size:18
Alignment explanation
Indices: 65864091--65864124 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
65864081 TGATAAAAAT
65864091 ATAGTTTCATTATTTTTA
1 ATAGTTTCATTATTTTTA
65864109 ATAGTTT-A-TATTTTTA
1 ATAGTTTCATTATTTTTA
65864125 TAATTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (18 bp):
ATAGTTTCATTATTTTTA
Found at i:65877014 original size:25 final size:25
Alignment explanation
Indices: 65876958--65877016 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
65876948 CTCAAGTCGT
* *
65876958 AAGAGCTTACAGTTATTCAGCTCGG
1 AAGAGCTTACAGATATTAAGCTCGG
* *
65876983 AAAAGCTTACTGATATTAAGCTCGG
1 AAGAGCTTACAGATATTAAGCTCGG
*
65877008 ATGAGCTTA
1 AAGAGCTTA
65877017 ATGTTTATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (25 bp):
AAGAGCTTACAGATATTAAGCTCGG
Found at i:65885959 original size:8 final size:8
Alignment explanation
Indices: 65885943--65885972 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
65885933 ATAGCAAATA
*
65885943 ATATATAT
1 ATATGTAT
65885951 ATATGTAT
1 ATATGTAT
65885959 ATATGTAT
1 ATATGTAT
65885967 ATATGT
1 ATATGT
65885973 GAGAGTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (8 bp):
ATATGTAT
Found at i:65887153 original size:6 final size:6
Alignment explanation
Indices: 65887142--65887166 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
65887132 ATGAAATCTG
65887142 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
65887167 TTTTTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:65901837 original size:18 final size:18
Alignment explanation
Indices: 65901810--65901902 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
65901800 CCCAACTACT
* *
65901810 GTATATGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
65901828 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
*
65901846 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
65901864 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
65901882 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
65901900 GTA
1 GTA
65901903 AACGGTCGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:65901862 original size:36 final size:36
Alignment explanation
Indices: 65901810--65901902 Score: 141
Period size: 36 Copynumber: 2.6 Consensus size: 36
65901800 CCCAACTACT
* * *
65901810 GTATATGTGAACAGTACCGTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
65901846 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
65901882 ATATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
65901903 AACGGTCGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:65903399 original size:18 final size:18
Alignment explanation
Indices: 65903373--65903410 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
65903363 ATATTGTCGA
*
65903373 AATTGAATTGTATT-GATT
1 AATTAAATTG-ATTGGATT
65903391 AATTAAATTGATTGGATT
1 AATTAAATTGATTGGATT
65903409 AA
1 AA
65903411 AAATTGGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (18 bp):
AATTAAATTGATTGGATT
Found at i:65913345 original size:15 final size:15
Alignment explanation
Indices: 65913320--65913354 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
65913310 GACTCTATTT
*
65913320 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
65913334 TAATTAATATTAAGA
1 TAATTAATATTAAGA
65913349 TAATTA
1 TAATTA
65913355 TTAAAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:65920080 original size:21 final size:22
Alignment explanation
Indices: 65920051--65920097 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
65920041 CAGAAGGAGT
* *
65920051 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGATG
65920073 GAGT-GTACTCCGCAGCAGATG
1 GAGTAGTACTCCGCAGCAGATG
65920094 GAGT
1 GAGT
65920098 TTGAGCAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGATG
Found at i:65923437 original size:25 final size:25
Alignment explanation
Indices: 65923408--65923466 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
65923398 CCTCGATGAT
**
65923408 CTTACTGTTATTCTGCTCGGAAGAG
1 CTTACTGTTATTAAGCTCGGAAGAG
* * *
65923433 TTTACTGATATTAAGCTCGGATGAG
1 CTTACTGTTATTAAGCTCGGAAGAG
65923458 CTTACTGTT
1 CTTACTGTT
65923467 TATCGCTCGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (25 bp):
CTTACTGTTATTAAGCTCGGAAGAG
Found at i:65927218 original size:12 final size:12
Alignment explanation
Indices: 65927201--65927225 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65927191 TACTGCACTT
65927201 TATCATCAGTAA
1 TATCATCAGTAA
65927213 TATCATCAGTAA
1 TATCATCAGTAA
65927225 T
1 T
65927226 TCAATGTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCATCAGTAA
Found at i:65933073 original size:9 final size:9
Alignment explanation
Indices: 65933044--65933080 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
65933034 TGAGTTTTCG
65933044 AATTCGAAT
1 AATTCGAAT
*
65933053 AACTCGAAT
1 AATTCGAAT
65933062 AATTCGAAT
1 AATTCGAAT
*
65933071 AATTCAAAT
1 AATTCGAAT
65933080 A
1 A
65933081 TTAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:65939735 original size:36 final size:37
Alignment explanation
Indices: 65939678--65939748 Score: 108
Period size: 36 Copynumber: 1.9 Consensus size: 37
65939668 TAAATTAATT
* *
65939678 TTATTTGCTTCAAAATAAAAAATAGAATAATTAAAGA
1 TTATTTGCTTAAAAATAAAAAATAAAATAATTAAAGA
*
65939715 TTATTTTCTTAAAAAT-AAAAATAAAATAATTAAA
1 TTATTTGCTTAAAAATAAAAAATAAAATAATTAAA
65939749 TTAAGTTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 17 0.55
37 14 0.45
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (37 bp):
TTATTTGCTTAAAAATAAAAAATAAAATAATTAAAGA
Found at i:65940995 original size:34 final size:32
Alignment explanation
Indices: 65940952--65941023 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 32
65940942 TATATATAAT
65940952 AATATAATATAATA-ACATACTTATT-AATTAAGTA
1 AATATAATATAATATACA-ACTT-TTAAATTAA--A
65940986 AATATAATATAATATACAACTTTTAAATTAAA
1 AATATAATATAATATACAACTTTTAAATTAAA
65941018 AATATA
1 AATATA
65941024 TTAGATTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
32 7 0.19
33 2 0.06
34 24 0.67
35 3 0.08
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.38
Consensus pattern (32 bp):
AATATAATATAATATACAACTTTTAAATTAAA
Found at i:65949844 original size:40 final size:40
Alignment explanation
Indices: 65949794--65949887 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
65949784 GTTTGGATAA
* *
65949794 AAAACGCCGCTAAAGATCGAGCATTAGTGGCAATTTTTGG
1 AAAACGCCGCTAAAGATCGAACATTAGCGGCAATTTTTGG
* * *
65949834 AAAACGCCGCTAAAGGTCGAATATTAGCGGCACTTTTTGG
1 AAAACGCCGCTAAAGATCGAACATTAGCGGCAATTTTTGG
65949874 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
65949888 AACAACCATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAACATTAGCGGCAATTTTTGG
Found at i:65950088 original size:28 final size:28
Alignment explanation
Indices: 65950039--65950093 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
65950029 GTAATTATAT
* *
65950039 GGATTTAAGGATTATGGTTTAAGGGTTG
1 GGATTTAAGGATTAAGGGTTAAGGGTTG
* *
65950067 GGATTTGAGGTTTAAGGGTTAAGGGTT
1 GGATTTAAGGATTAAGGGTTAAGGGTT
65950094 AGGGGTTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (28 bp):
GGATTTAAGGATTAAGGGTTAAGGGTTG
Found at i:65950097 original size:13 final size:13
Alignment explanation
Indices: 65950082--65950123 Score: 66
Period size: 13 Copynumber: 3.1 Consensus size: 13
65950072 TGAGGTTTAA
65950082 GGGTTAAGGGTTAG
1 GGGTT-AGGGTTAG
65950096 GGGTTAGGGTTAG
1 GGGTTAGGGTTAG
65950109 GGGTTAGGTGTTAG
1 GGGTTAGG-GTTAG
65950123 G
1 G
65950124 AATTAGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.17, C:0.00, G:0.52, T:0.31
Consensus pattern (13 bp):
GGGTTAGGGTTAG
Found at i:65950106 original size:20 final size:20
Alignment explanation
Indices: 65950081--65950123 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
65950071 TTGAGGTTTA
65950081 AGGGTTAAGGGTTAGGGGTT
1 AGGGTTAAGGGTTAGGGGTT
* *
65950101 AGGGTTAGGGGTTAGGTGTT
1 AGGGTTAAGGGTTAGGGGTT
65950121 AGG
1 AGG
65950124 AATTAGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.51, T:0.30
Consensus pattern (20 bp):
AGGGTTAAGGGTTAGGGGTT
Found at i:65950115 original size:7 final size:7
Alignment explanation
Indices: 65950082--65950123 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
65950072 TGAGGTTTAA
*
65950082 GGGTTAA
1 GGGTTAG
65950089 GGGTTAG
1 GGGTTAG
65950096 GGGTTA-
1 GGGTTAG
65950102 GGGTTAG
1 GGGTTAG
65950109 GGGTTAG
1 GGGTTAG
*
65950116 GTGTTAG
1 GGGTTAG
65950123 G
1 G
65950124 AATTAGAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.17, C:0.00, G:0.52, T:0.31
Consensus pattern (7 bp):
GGGTTAG
Found at i:65953971 original size:43 final size:42
Alignment explanation
Indices: 65953924--65954140 Score: 229
Period size: 43 Copynumber: 5.1 Consensus size: 42
65953914 TTTCACGACA
** *
65953924 TTTGTGAGAAAAGTACCGTTAAAAGTGATGATCTATAGCGGCG
1 TTTGTG-GAAAAGCGCCGTTAAAAGTCATGATCTATAGCGGCG
* * * *
65953967 TTTGTGGTAAAAGCGTCGTTAAAATTCATGACCT-TAGCGTCG
1 TTTGTGG-AAAAGCGCCGTTAAAAGTCATGATCTATAGCGGCG
* **
65954009 TTTGTGGAAAAAGTGTTGTTAAAAGTCATGATCTATAGCGGCG
1 TTTGTGG-AAAAGCGCCGTTAAAAGTCATGATCTATAGCGGCG
* * * *
65954052 TTTGTGGGAAAAGCGCTGCTAAAAGTCATGATCTTTAGCAGCG
1 TTTGT-GGAAAAGCGCCGTTAAAAGTCATGATCTATAGCGGCG
* * *
65954095 TTTGTGTGAAAAGCGCCGCTAAAAGTCTTGTTCTATAGCGGCG
1 TTTGTG-GAAAAGCGCCGTTAAAAGTCATGATCTATAGCGGCG
65954138 TTT
1 TTT
65954141 CTTTCTAAAA
Statistics
Matches: 147, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
42 38 0.26
43 107 0.73
44 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (42 bp):
TTTGTGGAAAAGCGCCGTTAAAAGTCATGATCTATAGCGGCG
Found at i:65954021 original size:85 final size:86
Alignment explanation
Indices: 65953924--65954140 Score: 255
Period size: 85 Copynumber: 2.5 Consensus size: 86
65953914 TTTCACGACA
* * * *
65953924 TTTGT-GAGAAAAGTACCGTTAAAAGTGATGATCTATAGCGGCGTTTGTGGTAAAAGCG-TCGTT
1 TTTGTGGA-AAAAGTGCCGTTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAAAAGCGCT-GCT
*
65953987 AAAATTCATGA-CCTTAGC-GTCG
64 AAAAGTCATGATCCTTAGCAG-CG
**
65954009 TTTGTGGAAAAAGTGTTGTTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAAAAGCGCTGCTAA
1 TTTGTGGAAAAAGTGCCGTTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAAAAGCGCTGCTAA
*
65954074 AAGTCATGATCTTTAGCAGCG
66 AAGTCATGATCCTTAGCAGCG
* * * *
65954095 TTTGTGTG-AAAAGCGCCGCTAAAAGTCTTGTTCTATAGCGGCGTTT
1 TTTGTG-GAAAAAGTGCCGTTAAAAGTCATGATCTATAGCGGCGTTT
65954141 CTTTCTAAAA
Statistics
Matches: 113, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
85 62 0.55
86 49 0.43
87 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (86 bp):
TTTGTGGAAAAAGTGCCGTTAAAAGTCATGATCTATAGCGGCGTTTGTGGGAAAAGCGCTGCTAA
AAGTCATGATCCTTAGCAGCG
Found at i:65954848 original size:34 final size:34
Alignment explanation
Indices: 65954800--65954867 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
65954790 CTCCCTCTCC
65954800 ATCCATCTTCATATTCAATATCCATTTCATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
* * * *
65954834 ATCCTTCTTCATATTCAGTATTCATTTGATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
65954868 TTCTCGTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (34 bp):
ATCCATCTTCATATTCAATATCCATTTCATGCAT
Found at i:65964151 original size:72 final size:72
Alignment explanation
Indices: 65964034--65964173 Score: 217
Period size: 72 Copynumber: 1.9 Consensus size: 72
65964024 TCTTAGATTT
* * * *
65964034 AAAAAAGGGATCATGCCCAGTAAGTTAGGACGCGATCTTTTCTTAATTCCTGAAATCGTTTAAAA
1 AAAAAAGAGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAAATCGTTTAAAA
65964099 CTTGAGG
66 CTTGAGG
** *
65964106 AAAAAAGAGATCATGCCTTGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGAGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAAATCGTTTAAAA
65964171 CTT
66 CTT
65964174 TGGTTTGAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (72 bp):
AAAAAAGAGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAAATCGTTTAAAA
CTTGAGG
Found at i:65968010 original size:17 final size:18
Alignment explanation
Indices: 65967988--65968028 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
65967978 CGAATCTTTC
65967988 TTTTCTATTT-TTGCTAT-
1 TTTTCTATTTGTTGC-ATG
*
65968005 TTTTCTTTTTGTTGCATG
1 TTTTCTATTTGTTGCATG
65968023 TTTTCT
1 TTTTCT
65968029 TTCCTTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.07, C:0.12, G:0.10, T:0.71
Consensus pattern (18 bp):
TTTTCTATTTGTTGCATG
Found at i:65968026 original size:18 final size:17
Alignment explanation
Indices: 65967988--65968030 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
65967978 CGAATCTTTC
*
65967988 TTTTCTATTTTTGCTAT
1 TTTTCTTTTTTTGCTAT
65968005 TTTTCTTTTTGTTGC-AT
1 TTTTCTTTTT-TTGCTAT
65968022 GTTTTCTTT
1 -TTTTCTTT
65968031 CCTTTTGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (17 bp):
TTTTCTTTTTTTGCTAT
Found at i:65968649 original size:19 final size:19
Alignment explanation
Indices: 65968625--65968670 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
65968615 TGTAAGCAAT
65968625 AACACCAAGAGATCCATTA
1 AACACCAAGAGATCCATTA
65968644 AACACCAAGAGATCCATTA
1 AACACCAAGAGATCCATTA
65968663 AACACCAA
1 AACACCAA
65968671 TACCTCGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.50, C:0.28, G:0.09, T:0.13
Consensus pattern (19 bp):
AACACCAAGAGATCCATTA
Found at i:65969758 original size:46 final size:46
Alignment explanation
Indices: 65969654--65969861 Score: 350
Period size: 46 Copynumber: 4.6 Consensus size: 46
65969644 TACTTATGAT
* *
65969654 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
65969697 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
65969743 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
65969789 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
65969835 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
65969862 AGTACTCAAA
Statistics
Matches: 158, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
43 10 0.06
44 5 0.03
45 20 0.13
46 123 0.78
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:65972998 original size:26 final size:26
Alignment explanation
Indices: 65972952--65973003 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
65972942 TATTTTAGCT
*
65972952 ATTTTATTATTAAATTAATTATTTTA
1 ATTTTATTATCAAATTAATTATTTTA
*
65972978 ATTTTATTATCACTATT-ATTATTTTA
1 ATTTTATTATCA-AATTAATTATTTTA
65973004 CCCTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTTATTATCAAATTAATTATTTTA
Found at i:65975829 original size:12 final size:12
Alignment explanation
Indices: 65975812--65975836 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65975802 GGTGTTCATT
65975812 CGGTTAACCGAC
1 CGGTTAACCGAC
65975824 CGGTTAACCGAC
1 CGGTTAACCGAC
65975836 C
1 C
65975837 CGAAATTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:65976020 original size:9 final size:9
Alignment explanation
Indices: 65975994--65976068 Score: 62
Period size: 9 Copynumber: 8.2 Consensus size: 9
65975984 TTTGGTTAAA
*
65975994 AATTACCCA
1 AATTACCCG
65976003 AATTACCCG
1 AATTACCCG
65976012 AATTACCCG
1 AATTACCCG
*
65976021 -ATTAACCG
1 AATTACCCG
* *
65976029 AATTAACTG
1 AATTACCCG
**
65976038 AATTACCTAAA
1 AATTACC--CG
65976049 AATTACCCG
1 AATTACCCG
*
65976058 AACTACCCG
1 AATTACCCG
65976067 AA
1 AA
65976069 AATTACCCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
8 7 0.13
9 40 0.74
11 7 0.13
ACGTcount: A:0.41, C:0.28, G:0.08, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:65976029 original size:17 final size:18
Alignment explanation
Indices: 65975994--65976033 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
65975984 TTTGGTTAAA
*
65975994 AATTACCCAAATTACCCG
1 AATTACCCAAATTAACCG
*
65976012 AATTACCC-GATTAACCG
1 AATTACCCAAATTAACCG
65976029 AATTA
1 AATTA
65976034 ACTGAATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.25
Consensus pattern (18 bp):
AATTACCCAAATTAACCG
Found at i:65977292 original size:31 final size:29
Alignment explanation
Indices: 65977223--65977296 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
65977213 ACAAAATAAT
**
65977223 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
65977252 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
65977283 AACAAAAGTGACTA
1 AACATAAGTGACTA
65977297 CTTTTGTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:65980179 original size:13 final size:13
Alignment explanation
Indices: 65980161--65980190 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
65980151 CTCCAAAATA
65980161 CATTAAAACAATT
1 CATTAAAACAATT
65980174 CATTAAAACAATT
1 CATTAAAACAATT
65980187 CATT
1 CATT
65980191 GTAGTCCTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (13 bp):
CATTAAAACAATT
Found at i:65980517 original size:21 final size:21
Alignment explanation
Indices: 65980488--65980541 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
65980478 ATTATATTGA
65980488 AATGATATTTATATTTATGAT
1 AATGATATTTATATTTATGAT
* * *
65980509 AATGTTATTTATCTTTGTGAT
1 AATGATATTTATATTTATGAT
* *
65980530 AATTAAATTTAT
1 AATGATATTTAT
65980542 CTAGCCATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (21 bp):
AATGATATTTATATTTATGAT
Found at i:65994876 original size:34 final size:34
Alignment explanation
Indices: 65994816--65994883 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
65994806 CTCCCTCTCC
*
65994816 ATCCATCTTTATATTCAATATCCATTTCATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
* * * *
65994850 ATCCTTCTTCATATTCAGTATTCATTTGATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
65994884 TTCTCGTTGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46
Consensus pattern (34 bp):
ATCCATCTTCATATTCAATATCCATTTCATGCAT
Found at i:65995609 original size:38 final size:39
Alignment explanation
Indices: 65995524--65995665 Score: 142
Period size: 41 Copynumber: 3.6 Consensus size: 39
65995514 TGACCTTTCA
* *
65995524 GGGCTTTAGCGGCATTTTTGAATAAGCGCCACTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCG-C-CTAATGCTCG
*
65995565 GGGCTTTAGTGGCGTTTTTGAAGAAGCG-CTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCTAATGCTCG
* * * * * *
65995603 GTGCTTTAGCGGCGTTTTTGAAAAAACTCTGCTAGTTCTCG
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGC--CTAATGCTCG
* *
65995644 GGCCTTTAGCGGCGCTTTTGAA
1 GGGCTTTAGCGGCGTTTTTGAA
65995666 AATTCAATTT
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 33 0.39
41 52 0.61
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (39 bp):
GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCTAATGCTCG
Found at i:65995956 original size:36 final size:36
Alignment explanation
Indices: 65995916--65995999 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
65995906 TATCATTATA
* * *
65995916 GTTTAGGGTTTAAGGTTTAGGGGTTAGGGGTTAGGG
1 GTTTAGGGTTTAAGGTTTAGGGGATAGGGATTAAGG
* * *
65995952 GTTTATGATTTATGGTTTAGGGGATAGGGATTAAGG
1 GTTTAGGGTTTAAGGTTTAGGGGATAGGGATTAAGG
65995988 GTTTAGGGTTTA
1 GTTTAGGGTTTA
65996000 GATTAATTAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.39
Consensus pattern (36 bp):
GTTTAGGGTTTAAGGTTTAGGGGATAGGGATTAAGG
Found at i:65995992 original size:29 final size:28
Alignment explanation
Indices: 65995919--65996000 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 28
65995909 CATTATAGTT
* * *
65995919 TAGGGTTTAAGGTTTAGGGGTTAGGGGT
1 TAGGGATTAAGGTTTAGGGTTTAGGGGA
* * * *
65995947 TAGGGGTTTATGATTTATGGTTTAGGGGA
1 TA-GGGATTAAGGTTTAGGGTTTAGGGGA
65995976 TAGGGATTAAGGGTTTAGGGTTTAG
1 TAGGGATTAA-GGTTTAGGGTTTAG
65996001 ATTAATTAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
28 8 0.19
29 35 0.81
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (28 bp):
TAGGGATTAAGGTTTAGGGTTTAGGGGA
Found at i:65995995 original size:7 final size:7
Alignment explanation
Indices: 65995916--65996000 Score: 71
Period size: 7 Copynumber: 11.9 Consensus size: 7
65995906 TATCATTATA
65995916 GTTTAGG
1 GTTTAGG
*
65995923 GTTTAAG
1 GTTTAGG
65995930 GTTTAGG
1 GTTTAGG
*
65995937 GGTTAGG
1 GTTTAGG
*
65995944 GGTTAGGG
1 GTTTA-GG
*
65995952 GTTTATG
1 GTTTAGG
* *
65995959 ATTTATG
1 GTTTAGG
65995966 GTTTAGG
1 GTTTAGG
**
65995973 GGATAGG
1 GTTTAGG
*
65995980 GATTAAGG
1 G-TTTAGG
65995988 GTTTAGG
1 GTTTAGG
65995995 GTTTAG
1 GTTTAG
65996001 ATTAATTAGT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
7 52 0.84
8 10 0.16
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
GTTTAGG
Found at i:66000054 original size:29 final size:29
Alignment explanation
Indices: 66000022--66000077 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
66000012 TCCGCATCCC
66000022 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
66000051 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
66000078 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:66004873 original size:40 final size:41
Alignment explanation
Indices: 66004816--66004905 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 41
66004806 TCCTCGTAGG
* *
66004816 CGCGATTTGTGTCCACGTAAGC-AAAGCGCGCTGACGTGGA
1 CGCGATTTGTGTACACGTAACCGAAAGCGCGCTGACGTGGA
** * *
66004856 CGCGATTTGCTG-ACACGTCCCCTGACATCGCGCTGACGTGGA
1 CGCGATTTG-TGTACACGTAACC-GAAAGCGCGCTGACGTGGA
66004898 CGCGATTT
1 CGCGATTT
66004906 TGGGGAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
40 15 0.37
41 2 0.05
42 24 0.59
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (41 bp):
CGCGATTTGTGTACACGTAACCGAAAGCGCGCTGACGTGGA
Found at i:66009070 original size:29 final size:29
Alignment explanation
Indices: 66009038--66009093 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
66009028 TCCGCATCCC
66009038 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
66009067 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
66009094 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:66010778 original size:19 final size:18
Alignment explanation
Indices: 66010743--66010777 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
66010733 TCTGTTCTAT
66010743 TTTACTTGCGTTTTTTTA
1 TTTACTTGCGTTTTTTTA
66010761 TTTACTTGCGTTTTTTT
1 TTTACTTGCGTTTTTTT
66010778 TGAGTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.11, G:0.11, T:0.69
Consensus pattern (18 bp):
TTTACTTGCGTTTTTTTA
Found at i:66011713 original size:81 final size:81
Alignment explanation
Indices: 66011611--66011802 Score: 221
Period size: 81 Copynumber: 2.4 Consensus size: 81
66011601 GGCCCATTTT
* * *** *
66011611 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAGTATTTTAAAAA-TATTTTTTAAA-TATTTTAAA
1 TATTTTAAAAATATTT-TAAAATTAAAAAAAATA-AAAAAAAAGTA-TTTTAAAAGTATTTTAAA
66011673 A-TTAAAAAAATTAAAAAAA
63 ATTTAAAAAAATT-AAAAAA
66011692 TATTTTAAAAATATTTTAAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAGTATTTTAAAATT
1 TATTTTAAAAATATTTTAAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAGTATTTTAAAA-T
* *
66011757 TTTAAAAAATTAAAAAG
65 TTAAAAAAATTAAAAAA
* *
66011774 TATGTAAAAAATATTTTAAAATTAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAA
66011803 TAAATATATT
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
80 12 0.12
81 39 0.41
82 35 0.36
83 10 0.10
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (81 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAGTATTTTAAAATT
TAAAAAAATTAAAAAA
Found at i:66011722 original size:92 final size:92
Alignment explanation
Indices: 66011611--66011794 Score: 241
Period size: 92 Copynumber: 2.0 Consensus size: 92
66011601 GGCCCATTTT
** * *
66011611 TATTTTAAAAATTTTAAAAAAT-TAAAAAAAGTATTTTAAAAATATTTTTTAAATATTTT-AAAA
1 TATTTT-AAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAATA-TTTTAAAAT-TTTTAAAAA
66011674 TTAAAAA-AAT-TAAAAAAATATTTTAAAAA
63 TTAAAAAGAATGT-AAAAAATATTTTAAAAA
*
66011703 TATTTTAAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAGTATTTTAAAATTTTTAAAAAATT
1 TATTTTAAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATTTTT-AAAAATT
*
66011768 AAAAAGTATGTAAAAAATATTTTAAAA
65 AAAAAGAATGTAAAAAATATTTTAAAA
66011795 TTAAAAAATA
Statistics
Matches: 81, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
90 4 0.05
91 21 0.26
92 37 0.46
93 18 0.22
94 1 0.01
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (92 bp):
TATTTTAAAATTAAAAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAATTTTTAAAAATTA
AAAAGAATGTAAAAAATATTTTAAAAA
Found at i:66011743 original size:11 final size:11
Alignment explanation
Indices: 66011729--66011794 Score: 59
Period size: 11 Copynumber: 6.4 Consensus size: 11
66011719 AAAATAAAAA
66011729 AAAAGTATTTT
1 AAAAGTATTTT
66011740 AAAAGTATTTT
1 AAAAGTATTTT
66011751 AAAA-T-TTTT
1 AAAAGTATTTT
* *
66011760 AAAA--AATTA
1 AAAAGTATTTT
* *
66011769 AAAAGTATGTA
1 AAAAGTATTTT
*
66011780 AAAAATATTTT
1 AAAAGTATTTT
66011791 AAAA
1 AAAA
66011795 TTAAAAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
9 14 0.31
10 1 0.02
11 30 0.67
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:66022672 original size:18 final size:19
Alignment explanation
Indices: 66022639--66022676 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
66022629 AGACTCCAGG
*
66022639 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
66022658 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
66022676 T
1 T
66022677 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:66037018 original size:18 final size:19
Alignment explanation
Indices: 66036995--66037032 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
66036985 GGAAGCAAGC
*
66036995 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
66037013 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
66037032 A
1 A
66037033 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:66040016 original size:29 final size:29
Alignment explanation
Indices: 66039984--66040039 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
66039974 TCCGCATCCC
66039984 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
66040013 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
66040040 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:66041724 original size:19 final size:18
Alignment explanation
Indices: 66041689--66041723 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
66041679 TCTGTTCTAT
66041689 TTTACTTGCGTTTTTTTA
1 TTTACTTGCGTTTTTTTA
66041707 TTTACTTGCGTTTTTTT
1 TTTACTTGCGTTTTTTT
66041724 TTTTGAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.11, G:0.11, T:0.69
Consensus pattern (18 bp):
TTTACTTGCGTTTTTTTA
Found at i:66042602 original size:11 final size:11
Alignment explanation
Indices: 66042562--66042738 Score: 90
Period size: 11 Copynumber: 16.9 Consensus size: 11
66042552 GGCCCATTTT
66042562 TATTTT-AAAA
1 TATTTTAAAAA
66042572 -ATTTTAAAAA
1 TATTTTAAAAA
**
66042582 -ATTAAAAAAA
1 TATTTTAAAAA
66042592 GTATTTTAAAAA
1 -TATTTTAAAAA
**
66042604 TATTTTTTAAA
1 TATTTTAAAAA
66042615 TATTTT--AAA
1 TATTTTAAAAA
**
66042624 -ATTAAAAAAA
1 TATTTTAAAAA
66042634 TATTTTAAAAA
1 TATTTTAAAAA
*
66042645 TATTTTAAAAT
1 TATTTTAAAAA
****
66042656 TAAAAAAAAAA
1 TATTTTAAAAA
***
66042667 TA-AAAAAAAA
1 TATTTTAAAAA
*
66042677 GTATTTTAAAAG
1 -TATTTTAAAAA
66042689 TATTTT-AAAA
1 TATTTTAAAAA
66042699 T-TTTTAAAAA
1 TATTTTAAAAA
66042709 -A--TTAAAAA
1 TATTTTAAAAA
* *
66042717 GTATGTAAAAAA
1 -TATTTTAAAAA
66042729 TATTTTAAAA
1 TATTTTAAAA
66042739 TTAAAAAAAT
Statistics
Matches: 129, Mismatches: 24, Indels: 27
0.72 0.13 0.15
Matches are distributed among these distances:
8 10 0.08
9 12 0.09
10 32 0.25
11 57 0.44
12 18 0.14
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:66042625 original size:42 final size:42
Alignment explanation
Indices: 66042564--66042734 Score: 142
Period size: 44 Copynumber: 4.0 Consensus size: 42
66042554 CCCATTTTTA
66042564 TTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATT
1 TTTTAAAAATTTT-AAAAATTAAAAAAA-TATTTTAAAAATATT
*
66042608 TTTTAAATATTTT-AAAATTAAAAAAATATTTTAAAAATATT
1 TTTTAAAAATTTTAAAAATTAAAAAAATATTTTAAAAATATT
* *
66042649 TTAAAATTAAAAA----AAAAATAAAAAAAAAGTATTTTAAAAGTA--
1 TT----TTAAAAATTTTAAAAAT-TAAAAAAA-TATTTTAAAAATATT
* * * *
66042691 TTTTAAAATTTTTAAAAAATT-AAAAAGTATGTAAAAAATATT
1 TTTTAAAAATTTT-AAAAATTAAAAAAATATTTTAAAAATATT
66042733 TT
1 TT
66042735 AAAATTAAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
38 6 0.06
40 10 0.10
41 22 0.21
42 22 0.21
43 13 0.13
44 24 0.23
45 6 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (42 bp):
TTTTAAAAATTTTAAAAATTAAAAAAATATTTTAAAAATATT
Found at i:66042635 original size:30 final size:30
Alignment explanation
Indices: 66042599--66042663 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
66042589 AAAGTATTTT
**
66042599 AAAAATATTTTTTAAATATTTTAAAATTAA
1 AAAAATATTTTAAAAATATTTTAAAATTAA
66042629 AAAAATATTTTAAAAATATTTTAAAATTAA
1 AAAAATATTTTAAAAATATTTTAAAATTAA
66042659 AAAAA
1 AAAAA
66042664 AAATAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (30 bp):
AAAAATATTTTAAAAATATTTTAAAATTAA
Found at i:66042674 original size:30 final size:30
Alignment explanation
Indices: 66042612--66042674 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
66042602 AATATTTTTT
* * **
66042612 AAATATTTTAAAATTAAAAAAATATTTTAA
1 AAATATTTTAAAATTAAAAAAAAAATAAAA
66042642 AAATATTTTAAAATTAAAAAAAAAATAAAA
1 AAATATTTTAAAATTAAAAAAAAAATAAAA
66042672 AAA
1 AAA
66042675 AAGTATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (30 bp):
AAATATTTTAAAATTAAAAAAAAAATAAAA
Found at i:66044980 original size:23 final size:24
Alignment explanation
Indices: 66044929--66044980 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
66044919 CTGTTGTTAT
66044929 TATTATAATATTATTAATCTAATTA
1 TATT-TAATATTATTAATCTAATTA
66044954 -ATTTAATATTATT-AT-TACATTA
1 TATTTAATATTATTAATCTA-ATTA
66044976 TATTT
1 TATTT
66044981 CTTTTTCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 2 0.08
22 6 0.24
23 14 0.56
24 3 0.12
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTTAATATTATTAATCTAATTA
Found at i:66058218 original size:11 final size:11
Alignment explanation
Indices: 66058199--66058236 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
66058189 AAAAATTAAA
66058199 AAAAGTATTTTT
1 AAAA-TATTTTT
66058211 AAAATATTTTT
1 AAAATATTTTT
66058222 AAAATA-TTTT
1 AAAATATTTTT
66058232 AAAAT
1 AAAAT
66058237 TTTAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.35
11 13 0.50
12 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:66058297 original size:41 final size:41
Alignment explanation
Indices: 66058222--66058367 Score: 242
Period size: 41 Copynumber: 3.6 Consensus size: 41
66058212 AAATATTTTT
* *
66058222 AAAATATTTTAAAATTTT-AAAAATTAAAAAAAGTATTTTA
1 AAAATATTTTAAAATTTTAAAAAATTTAAAAAAGTATTTAA
66058262 AAAATATTTTAAAATTTTAAAAAATTTAAAAAAGTATTTAA
1 AAAATATTTTAAAATTTTAAAAAATTTAAAAAAGTATTTAA
*
66058303 AAAATATTTTAAAATTTTAAAAAATTTAAAAAAGTATGTAA
1 AAAATATTTTAAAATTTTAAAAAATTTAAAAAAGTATTTAA
*
66058344 AAAATATTTTAAAA-TTAAAAAAAT
1 AAAATATTTTAAAATTTTAAAAAAT
66058368 AAATATATTT
Statistics
Matches: 101, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
40 27 0.27
41 74 0.73
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (41 bp):
AAAATATTTTAAAATTTTAAAAAATTTAAAAAAGTATTTAA
Found at i:66058317 original size:51 final size:49
Alignment explanation
Indices: 66058174--66058334 Score: 177
Period size: 51 Copynumber: 3.2 Consensus size: 49
66058164 GCCCATTTTT
66058174 ATTTTAAAAATTTAAAAAA-ATTAAAAAAAGTATTTTTAAAATATTTTTAAA
1 ATTTTAAAAATTTAAAAAATATTAAAAAAA-TA-TTTTAAAATA-TTTTAAA
* *
66058225 ATATTTTAAAATTT-TAAAA-ATTAAAAAAAGTATTTTAAAAATATTTTAAA
1 AT-TTTAAAAATTTAAAAAATATTAAAAAAA-TATTTT-AAAATATTTTAAA
* *
66058275 ATTTTAAAAAATTTAAAAAAGTATTTAAAAAATATTTTAAAAT-TTTAAAA
1 ATTTT-AAAAATTTAAAAAA-TATTAAAAAAATATTTTAAAATATTTTAAA
*
66058325 AATTTAAAAA
1 ATTTTAAAAA
66058335 AGTATGTAAA
Statistics
Matches: 97, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
49 8 0.08
50 30 0.31
51 34 0.35
52 16 0.16
53 9 0.09
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (49 bp):
ATTTTAAAAATTTAAAAAATATTAAAAAAATATTTTAAAATATTTTAAA
Found at i:66067291 original size:21 final size:22
Alignment explanation
Indices: 66067265--66067311 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
66067255 CTCTGCTCAA
*
66067265 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
66067286 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
66067308 ACTC
1 ACTC
66067312 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:66069314 original size:360 final size:360
Alignment explanation
Indices: 66068648--66069371 Score: 1403
Period size: 360 Copynumber: 2.0 Consensus size: 360
66068638 TCTGACTCTG
66068648 CTTCACTATTGCATTCTGCAACATTTGCATCTTGCGGAGTCTTCCCTTTTTTCTTCAATTTTGGA
1 CTTCACTATTGCATTCTGCAACATTTGCATCTTGCGGAGTCTTCCCTTTTTTCTTCAATTTTGGA
66068713 CAATCTTTCTTCCAATGTCCTTTTTCTTTGCAAAAGGAACATTCATCTTTGGCAACAGCTCGACC
66 CAATCTTTCTTCCAATGTCCTTTTTCTTTGCAAAAGGAACATTCATCTTTGGCAACAGCTCGACC
66068778 TTTGGACTTTCTTCTCTTCCCATTAGACTGACTTTGCTGACGACCTCTTGTTACCAATGCTTCCA
131 TTTGGACTTTCTTCTCTTCCCATTAGACTGACTTTGCTGACGACCTCTTGTTACCAATGCTTCCA
* *
66068843 CTGCTGCTTCACCTGAACCTTTCAACTTATCCTTTCGGCGTAGTTCATAGCTATACAATGCAGCA
196 CTGCTGCTTCACCTGAACCTTTCAACTTATCCTTTCGACGTAGGTCATAGCTATACAATGCAGCA
66068908 GTTACTTCATTGAAAGTTACTTCCGATTTTCCATGAAGTAGAGTAGTTTCAAGGTACTCAAACTC
261 GTTACTTCATTGAAAGTTACTTCCGATTTTCCATGAAGTAGAGTAGTTTCAAGGTACTCAAACTC
66068973 CTCAGGAAGCGATCCCAACAACATTAACGCCAAGT
326 CTCAGGAAGCGATCCCAACAACATTAACGCCAAGT
*
66069008 CTTCCCTATTGCATTCTGCAACATTTGCATCTTGCGGAGTCTTCCCTTTTTTCTTCAATTTTGGA
1 CTTCACTATTGCATTCTGCAACATTTGCATCTTGCGGAGTCTTCCCTTTTTTCTTCAATTTTGGA
66069073 CAATCTTTCTTCCAATGTCCTTTTTCTTTGCAAAAGGAACATTCATCTTTGGCAACAGCTCGACC
66 CAATCTTTCTTCCAATGTCCTTTTTCTTTGCAAAAGGAACATTCATCTTTGGCAACAGCTCGACC
66069138 TTTGGACTTTCTTCTCTTCCCATTAGACTGACTTTGCTGACGACCTCTTGTTACCAATGCTTCCA
131 TTTGGACTTTCTTCTCTTCCCATTAGACTGACTTTGCTGACGACCTCTTGTTACCAATGCTTCCA
66069203 CTGCTGCTTCACCTGAACCTTTCAACTTATCCTTTCGACGTAGGTCATAGCTATACAATGCAGCA
196 CTGCTGCTTCACCTGAACCTTTCAACTTATCCTTTCGACGTAGGTCATAGCTATACAATGCAGCA
*
66069268 GTTACTTCATTGAAAGTTACTTCTGATTTTCCATGAAGTAGAGTAGTTTCAAGGTACTCAAACTC
261 GTTACTTCATTGAAAGTTACTTCCGATTTTCCATGAAGTAGAGTAGTTTCAAGGTACTCAAACTC
*
66069333 CTCAGGAAGCGATCTCAACAACATTAACGCCAAGT
326 CTCAGGAAGCGATCCCAACAACATTAACGCCAAGT
66069368 CTTC
1 CTTC
66069372 GTCTTCAAAA
Statistics
Matches: 359, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
360 359 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (360 bp):
CTTCACTATTGCATTCTGCAACATTTGCATCTTGCGGAGTCTTCCCTTTTTTCTTCAATTTTGGA
CAATCTTTCTTCCAATGTCCTTTTTCTTTGCAAAAGGAACATTCATCTTTGGCAACAGCTCGACC
TTTGGACTTTCTTCTCTTCCCATTAGACTGACTTTGCTGACGACCTCTTGTTACCAATGCTTCCA
CTGCTGCTTCACCTGAACCTTTCAACTTATCCTTTCGACGTAGGTCATAGCTATACAATGCAGCA
GTTACTTCATTGAAAGTTACTTCCGATTTTCCATGAAGTAGAGTAGTTTCAAGGTACTCAAACTC
CTCAGGAAGCGATCCCAACAACATTAACGCCAAGT
Found at i:66074038 original size:17 final size:17
Alignment explanation
Indices: 66074016--66074049 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66074006 ATCCACTAAT
*
66074016 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
66074033 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
66074050 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:66078680 original size:17 final size:17
Alignment explanation
Indices: 66078658--66078691 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
66078648 ATCCACTAAT
*
66078658 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
66078675 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
66078692 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:66080683 original size:34 final size:34
Alignment explanation
Indices: 66080635--66080702 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
66080625 CTCCCTCTCC
66080635 ATCCATCTTCATATTCAATATCCATTTCATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
* * * *
66080669 ATCCTTCTTCATATTCAGTATTCATTTGATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
66080703 TTCTCGTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (34 bp):
ATCCATCTTCATATTCAATATCCATTTCATGCAT
Found at i:66095407 original size:21 final size:21
Alignment explanation
Indices: 66095381--66095421 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
66095371 AGACGAGCAA
* *
66095381 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
66095402 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
66095422 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:66100098 original size:72 final size:72
Alignment explanation
Indices: 66099981--66100123 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 72
66099971 TCCCGTATTT
* *
66099981 AAAAAAGGGATCATGCCCAATAAGTTAGGACGCGATCTTTTCTTAATTCCCGAAATCGTTTAAAA
1 AAAAAAGGGATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCCGAAATCGTTTAAAA
*
66100046 CTTGAGG
66 CATGAGG
* * *
66100053 AAAAAAGGGATCATGCCTAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCCGAAATCGTTTAAAA
66100118 CATGAG
66 CATGAG
66100124 TTTGAAAAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (72 bp):
AAAAAAGGGATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCCGAAATCGTTTAAAA
CATGAGG
Found at i:66102041 original size:44 final size:44
Alignment explanation
Indices: 66101865--66102060 Score: 127
Period size: 44 Copynumber: 4.5 Consensus size: 44
66101855 GATCTGCTCT
*
66101865 ACTACTGCTTAGGGAGACAAGATCTGCAATCTTGAACCTACTCC
1 ACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTACTCC
* * * * * * * *
66101909 ACTGCTGCTCAGGGAGATAGGATGGTG---GCTTAAATCTACTTCC
1 ACTACTGCTTAGGGAGACAAGAT-CTGCAATCTTCAACCTAC-TCC
* * * * * *
66101952 TTACTAC--CTTAGGAAGATAAGAT-T-CATCACCTTCGATCTGCTCC
1 --ACTACTGCTTAGGGAGACAAGATCTGCA--ATCTTCAACCTACTCC
*
66101996 ACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTATTCC
1 ACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTACTCC
* *
66102040 ACTATTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGACAAG
66102061 GCTGGTGGCT
Statistics
Matches: 114, Mismatches: 25, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
41 1 0.01
42 14 0.12
43 16 0.14
44 66 0.58
45 15 0.13
46 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (44 bp):
ACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTACTCC
Found at i:66102041 original size:131 final size:131
Alignment explanation
Indices: 66101784--66102104 Score: 453
Period size: 131 Copynumber: 2.4 Consensus size: 131
66101774 ATACTGCAAC
* * * * *
66101784 CTCAGTGAGATAAGACTAGTGGCTTCAATCTGCTTCCCTACTACCTTAAGAAGATAAGATTCATC
1 CTCAGGGAGATAGGA-TGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCATC
** * * * *
66101849 GTCTTTGATCTGCTCTACTACTGCTTAGGGAGACAAGATCTGCAATCTTGAACCTACTCCACTGC
65 ACCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTACTCCACTAC
66101914 TG
130 TG
* *
66101916 CTCAGGGAGATAGGATGGTGGCTTAAATCTACTTCCTTACTACCTTAGGAAGATAAGATTCATCA
1 CTCAGGGAGATAGGATGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCATCA
* *
66101981 CCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTATTCCACTATT
66 CCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTACTCCACTACT
66102046 G
131 G
* * * *
66102047 CTCAGGGAGACAAGGCTGGTGGCTTAAATCCGCTTCCCTACTACCTTGGGAAGATAAG
1 CTCAGGGAGA-TAGGATGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAG
66102105 GTATGATACG
Statistics
Matches: 167, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
131 113 0.68
132 54 0.32
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (131 bp):
CTCAGGGAGATAGGATGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCATCA
CCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAACCTACTCCACTACT
G
Found at i:66102215 original size:50 final size:50
Alignment explanation
Indices: 66102156--66102317 Score: 173
Period size: 50 Copynumber: 3.2 Consensus size: 50
66102146 ATCGGCAATT
* * *
66102156 TAGCTTTAATCTATTTAACTGCAATGCCGAGAAAGCAAGATTCACCGTTG
1 TAGCTTCAATCTATTTAACTGCAATGCCGAGGAAGCAAGATTCACTGTTG
* ** * * * * *
66102206 TAGCTTTAATCTATTCCACTACACTGCC-AGGGAAGTAAGATTCACTATCG
1 TAGCTTCAATCTATTTAACTGCAATGCCGA-GGAAGCAAGATTCACTGTTG
* * *
66102256 TAGCTTCAATCTATTTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTG
1 TAGCTTCAATCTATTTAACTGCAATGCCGAGGAAGCAAGATTCACTGTTG
*
66102306 TATCTTCAATCT
1 TAGCTTCAATCT
66102318 GTTCCACTAC
Statistics
Matches: 89, Mismatches: 21, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
49 1 0.01
50 87 0.98
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (50 bp):
TAGCTTCAATCTATTTAACTGCAATGCCGAGGAAGCAAGATTCACTGTTG
Found at i:66102273 original size:100 final size:100
Alignment explanation
Indices: 66102156--66102335 Score: 270
Period size: 100 Copynumber: 1.8 Consensus size: 100
66102146 ATCGGCAATT
* *
66102156 TAGCTTTAATCTATTTAACTGCAATGCCGAGAAAGCAAGATTCACCGTTGTAGCTTTAATCTATT
1 TAGCTTCAATCTATTTAACTGCAATGCCGAGAAAGCAAGATTCACCGTTGTAGCTTCAATCTATT
*
66102221 CCACTACACTGCCAGGGAAGTAAGATTCACTATCG
66 CCACTACACCGCCAGGGAAGTAAGATTCACTATCG
* * * * * * *
66102256 TAGCTTCAATCTATTTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTATCTTCAATCTGTT
1 TAGCTTCAATCTATTTAACTGCAATGCCGAGAAAGCAAGATTCACCGTTGTAGCTTCAATCTATT
66102321 CCACTACACCGCCAG
66 CCACTACACCGCCAG
66102336 ATAAAAGATT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 70 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (100 bp):
TAGCTTCAATCTATTTAACTGCAATGCCGAGAAAGCAAGATTCACCGTTGTAGCTTCAATCTATT
CCACTACACCGCCAGGGAAGTAAGATTCACTATCG
Found at i:66104270 original size:102 final size:102
Alignment explanation
Indices: 66104094--66104402 Score: 591
Period size: 102 Copynumber: 3.0 Consensus size: 102
66104084 AGATGAATTG
*
66104094 ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGACATCTATGCCCCACATAGAGAAAGTCT
1 ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGACATTTATGCCCCACATAGAGAAAGTCT
66104159 ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
66 ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
* *
66104196 ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGAAATTTATGCCCCACATAGAGAAATTCT
1 ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGACATTTATGCCCCACATAGAGAAAGTCT
66104261 ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
66 ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
66104298 ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGACATTTATGCCCCACATAGAGAAAGTCT
1 ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGACATTTATGCCCCACATAGAGAAAGTCT
66104363 ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
66 ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
66104400 ATG
1 ATG
66104403 GATCTTGTCT
Statistics
Matches: 202, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 202 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (102 bp):
ATGACCGTCAGAAGCTTTTGGCAAGATTGGCCTACTGACATTTATGCCCCACATAGAGAAAGTCT
ATGGAAAAGTCATAACATGAAGGGATGAATGAGGCAC
Found at i:66107318 original size:73 final size:73
Alignment explanation
Indices: 66107165--66107305 Score: 210
Period size: 73 Copynumber: 1.9 Consensus size: 73
66107155 TCTTAGATTT
* ** *
66107165 AAAAAAGGGATCATGCCCAGTAAGTTAGGATGCGATCTTTTCTTAATTCCTGAAATCGTTTAAAA
1 AAAAAAGAGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCTGAAATCGTTTAAAA
66107230 CTTGAGGA
66 CTTGAGGA
** * *
66107238 AAAAAAGAGATCATGCCTTGTAAGTTAGGACACGATCTCTTCTTAATTCTTGAGATCGTTTAAAA
1 AAAAAAGAGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCTGAAATCGTTTAAAA
66107303 CTT
66 CTT
66107306 TGGTTTGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (73 bp):
AAAAAAGAGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCTGAAATCGTTTAAAA
CTTGAGGA
Found at i:66111130 original size:18 final size:18
Alignment explanation
Indices: 66111088--66111131 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
66111078 CGAATCCTTC
* *
66111088 TTTTCTATTTTTGCTATT
1 TTTTCTTTTTTTGCTATG
66111106 TTTTCTTTTTGTTGC-ATG
1 TTTTCTTTTT-TTGCTATG
66111124 TTTTCTTT
1 TTTTCTTT
66111132 CCTTTTGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.07, C:0.11, G:0.09, T:0.73
Consensus pattern (18 bp):
TTTTCTTTTTTTGCTATG
Found at i:66112836 original size:46 final size:46
Alignment explanation
Indices: 66112736--66113073 Score: 538
Period size: 46 Copynumber: 7.6 Consensus size: 46
66112726 TACTTATGAT
*
66112736 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-A-GACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATG-CTAC
* *
66112779 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAACTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
66112825 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
66112871 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
66112917 CAC-T-T-A-----TCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
66112955 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
66113001 CACTTATCTCTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
66113047 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
66113074 AGTACTCAAA
Statistics
Matches: 276, Mismatches: 7, Indels: 21
0.91 0.02 0.07
Matches are distributed among these distances:
38 35 0.13
39 1 0.00
40 1 0.00
41 1 0.00
43 11 0.04
44 6 0.02
45 20 0.07
46 200 0.72
47 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
Found at i:66112937 original size:84 final size:85
Alignment explanation
Indices: 66112839--66113073 Score: 391
Period size: 84 Copynumber: 2.7 Consensus size: 85
66112829 TATCACTTTG
66112839 TCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTG
1 TCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTG
66112904 TAGCTAATGCTACCACTTA-
66 TAGCTAATGCTACCACTTAT
66112923 TCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTG
1 TCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTG
66112988 TAGCTAATGCTACCACTTATCTCTTT
66 TAGCTAATGCTACCACTTA------T
*
66113014 GTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTATCACTTGATCAGA
1 -TCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGA
66113074 AGTACTCAAA
Statistics
Matches: 142, Mismatches: 1, Indels: 8
0.94 0.01 0.05
Matches are distributed among these distances:
84 84 0.59
92 58 0.41
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (85 bp):
TCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTG
TAGCTAATGCTACCACTTAT
Found at i:66112942 original size:130 final size:130
Alignment explanation
Indices: 66112736--66113063 Score: 507
Period size: 130 Copynumber: 2.5 Consensus size: 130
66112726 TACTTATGAT
* * * *
66112736 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGACTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA-A-T---GC-TACCAC-TTATCACTT
66112799 GATCAGATAAGTGTAACTAAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA
59 GATCAGATAAGTGTAACTAAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA
66112864 ATGCTAC
124 ATGCTAC
66112871 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTGATCAGA
* *
66112936 TAAGTGTAGCTAATGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
66 TAAGTGTAACTAAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* *
66113001 CACTTATCTCTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTATCA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTGATCA
66113064 CTTGATCAGA
Statistics
Matches: 183, Mismatches: 8, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
130 139 0.76
131 5 0.03
132 1 0.01
135 11 0.06
136 6 0.03
137 21 0.11
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (130 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTGATCAGA
TAAGTGTAACTAAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
Found at i:66115755 original size:3 final size:3
Alignment explanation
Indices: 66115747--66115789 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
66115737 TAAATTGTTA
* * *
66115747 ATT ATT ATT ATT ATT ATT AATC ATC ATT ATT AAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT
66115790 CTTAAATTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 33 0.94
4 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:66118570 original size:9 final size:9
Alignment explanation
Indices: 66118556--66118633 Score: 50
Period size: 9 Copynumber: 8.3 Consensus size: 9
66118546 TTTTGGTTAA
66118556 AAATTACCC
1 AAATTACCC
66118565 AAATTACCC
1 AAATTACCC
* *
66118574 -GATTAACC
1 AAATTACCC
* *
66118582 GAATTAACC
1 AAATTACCC
* *
66118591 GAATTACCTGA
1 AAATTACC--C
66118602 AAATTACCC
1 AAATTACCC
*
66118611 GAATTACCC
1 AAATTACCC
66118620 AAAAATTACCC
1 --AAATTACCC
66118631 AAA
1 AAA
66118634 AAGTTTGGTG
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
8 6 0.11
9 34 0.62
11 15 0.27
ACGTcount: A:0.45, C:0.27, G:0.06, T:0.22
Consensus pattern (9 bp):
AAATTACCC
Found at i:66118612 original size:20 final size:20
Alignment explanation
Indices: 66118583--66118630 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
66118573 CGATTAACCG
* **
66118583 AATTAACCGAATTACCTGAA
1 AATTACCCGAATTACCCAAA
66118603 AATTACCCGAATTACCCAAA
1 AATTACCCGAATTACCCAAA
66118623 AATTACCC
1 AATTACCC
66118631 AAAAAGTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.27, G:0.06, T:0.23
Consensus pattern (20 bp):
AATTACCCGAATTACCCAAA
Found at i:66119862 original size:31 final size:29
Alignment explanation
Indices: 66119793--66119866 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
66119783 ACAAAATAAT
**
66119793 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
66119822 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
66119853 AACAAAAGTGACTA
1 AACATAAGTGACTA
66119867 CTTTTGTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:66122750 original size:13 final size:13
Alignment explanation
Indices: 66122732--66122761 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
66122722 CTCCAAAATA
66122732 CATTAAAACAATT
1 CATTAAAACAATT
66122745 CATTAAAACAATT
1 CATTAAAACAATT
66122758 CATT
1 CATT
66122762 GTAGTCCTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (13 bp):
CATTAAAACAATT
Found at i:66123088 original size:21 final size:21
Alignment explanation
Indices: 66123059--66123112 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
66123049 ATTATATTGA
66123059 AATGATATTTATATTTATGAT
1 AATGATATTTATATTTATGAT
* * *
66123080 AATGTTATTTATCTTTGTGAT
1 AATGATATTTATATTTATGAT
* *
66123101 AATTAAATTTAT
1 AATGATATTTAT
66123113 CTAGCCATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (21 bp):
AATGATATTTATATTTATGAT
Found at i:66137456 original size:34 final size:34
Alignment explanation
Indices: 66137396--66137463 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
66137386 CTCCCTCTCC
*
66137396 ATCCATCTTTATATTCAATATCCATTTCATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
* * * *
66137430 ATCCTTCTTCATATTCAGTATTCATTTGATGCAT
1 ATCCATCTTCATATTCAATATCCATTTCATGCAT
66137464 TTCTCGTTGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.26, C:0.22, G:0.06, T:0.46
Consensus pattern (34 bp):
ATCCATCTTCATATTCAATATCCATTTCATGCAT
Found at i:66138188 original size:38 final size:39
Alignment explanation
Indices: 66138103--66138203 Score: 141
Period size: 38 Copynumber: 2.6 Consensus size: 39
66138093 TGACCTTTCA
*
66138103 GGGCTTTAGCGGCATTTTTGAATAAGCGCCACTAATGCTCG
1 GGGCTTTAGCGGCATTTTTGAAGAAGCG-C-CTAATGCTCG
* *
66138144 GGGCTTTAGTGGCGTTTTTGAAGAAGCG-CTAATGCTCG
1 GGGCTTTAGCGGCATTTTTGAAGAAGCGCCTAATGCTCG
*
66138182 GTGCTTTAGCGGCATTTTTGAA
1 GGGCTTTAGCGGCATTTTTGAA
66138204 AAAACTCTGC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
38 29 0.54
41 25 0.46
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.33
Consensus pattern (39 bp):
GGGCTTTAGCGGCATTTTTGAAGAAGCGCCTAATGCTCG
Found at i:66138535 original size:36 final size:36
Alignment explanation
Indices: 66138495--66138578 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
66138485 TATCATTATA
* * *
66138495 GTTTAGGGTTTAAGGTTTAGGGGTTAGGGGTTAGGG
1 GTTTAGGGTTTAAGGTTTAGGGGATAGGGATTAAGG
* * *
66138531 GTTTATGATTTATGGTTTAGGGGATAGGGATTAAGG
1 GTTTAGGGTTTAAGGTTTAGGGGATAGGGATTAAGG
66138567 GTTTAGGGTTTA
1 GTTTAGGGTTTA
66138579 GATTAATTAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.39
Consensus pattern (36 bp):
GTTTAGGGTTTAAGGTTTAGGGGATAGGGATTAAGG
Found at i:66138571 original size:29 final size:28
Alignment explanation
Indices: 66138498--66138579 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 28
66138488 CATTATAGTT
* * *
66138498 TAGGGTTTAAGGTTTAGGGGTTAGGGGT
1 TAGGGATTAAGGTTTAGGGTTTAGGGGA
* * * *
66138526 TAGGGGTTTATGATTTATGGTTTAGGGGA
1 TA-GGGATTAAGGTTTAGGGTTTAGGGGA
66138555 TAGGGATTAAGGGTTTAGGGTTTAG
1 TAGGGATTAA-GGTTTAGGGTTTAG
66138580 ATTAATTAGT
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
28 8 0.19
29 35 0.81
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (28 bp):
TAGGGATTAAGGTTTAGGGTTTAGGGGA
Found at i:66138574 original size:7 final size:7
Alignment explanation
Indices: 66138495--66138579 Score: 71
Period size: 7 Copynumber: 11.9 Consensus size: 7
66138485 TATCATTATA
66138495 GTTTAGG
1 GTTTAGG
*
66138502 GTTTAAG
1 GTTTAGG
66138509 GTTTAGG
1 GTTTAGG
*
66138516 GGTTAGG
1 GTTTAGG
*
66138523 GGTTAGGG
1 GTTTA-GG
*
66138531 GTTTATG
1 GTTTAGG
* *
66138538 ATTTATG
1 GTTTAGG
66138545 GTTTAGG
1 GTTTAGG
**
66138552 GGATAGG
1 GTTTAGG
*
66138559 GATTAAGG
1 G-TTTAGG
66138567 GTTTAGG
1 GTTTAGG
66138574 GTTTAG
1 GTTTAG
66138580 ATTAATTAGT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
7 52 0.84
8 10 0.16
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
GTTTAGG
Found at i:66144086 original size:29 final size:29
Alignment explanation
Indices: 66144054--66144109 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
66144044 TCCGCATCCC
66144054 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
66144083 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
66144110 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:66153338 original size:29 final size:29
Alignment explanation
Indices: 66153306--66153361 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
66153296 TCCGCATCCC
66153306 TCTTCATATTCAGTATCCATTTCATGCCT
1 TCTTCATATTCAGTATCCATTTCATGCCT
* * *
66153335 TCTTCATATTTAGTATTCATTTGATGC
1 TCTTCATATTCAGTATCCATTTCATGC
66153362 ATCTCTCGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (29 bp):
TCTTCATATTCAGTATCCATTTCATGCCT
Found at i:66164230 original size:34 final size:34
Alignment explanation
Indices: 66164182--66164249 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
66164172 CTAGCTCCGC
*
66164182 ATCCCTCTTCATATTCAGTATCCATTTCATGCAT
1 ATCCCTCTTCATATTCACTATCCATTTCATGCAT
* * * *
66164216 ATCCTTCTTCATATTTACTATTCATTTGATGCAT
1 ATCCCTCTTCATATTCACTATCCATTTCATGCAT
66164250 CTCTCGCTGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.06, T:0.46
Consensus pattern (34 bp):
ATCCCTCTTCATATTCACTATCCATTTCATGCAT
Found at i:66166260 original size:3 final size:3
Alignment explanation
Indices: 66166184--66166244 Score: 63
Period size: 3 Copynumber: 21.0 Consensus size: 3
66166174 TCATTTTAAC
* ** * *
66166184 ATT ATT ATT ACT ATT ATT A-T ACC ATT AAT ATT A-T ATA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
66166230 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
66166245 TCCTCATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
2 4 0.09
3 43 0.91
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:66173086 original size:24 final size:25
Alignment explanation
Indices: 66173049--66173098 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
66173039 AAAGAAAAAA
* *
66173049 TATATTTAT-GAAAATTCTAAATTT
1 TATATTTATAAAAAATTATAAATTT
*
66173073 TATATTTTTAAAAAATTATAAATTT
1 TATATTTATAAAAAATTATAAATTT
66173098 T
1 T
66173099 TAAAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (25 bp):
TATATTTATAAAAAATTATAAATTT
Found at i:66175089 original size:26 final size:26
Alignment explanation
Indices: 66175039--66175118 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
66175029 GATTAAAGGT
* * *
66175039 CCCTTGAGTTTGAATGGGTCCGAGGA
1 CCCTTGAGTTTGAGTTGGTCGGAGGA
* *
66175065 CCCTTGAGTTTGAGTTAGTCGGAGGT
1 CCCTTGAGTTTGAGTTGGTCGGAGGA
*
66175091 CCCTTGAAG-TTGGGTTGGTCGGAGGA
1 CCCTTG-AGTTTGAGTTGGTCGGAGGA
66175117 CC
1 CC
66175119 ATGAGCAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
26 43 0.96
27 2 0.04
ACGTcount: A:0.16, C:0.19, G:0.36, T:0.29
Consensus pattern (26 bp):
CCCTTGAGTTTGAGTTGGTCGGAGGA
Found at i:66182700 original size:12 final size:12
Alignment explanation
Indices: 66182683--66182730 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
66182673 AAACCCTTAG
66182683 CTTTTCTTTCTC
1 CTTTTCTTTCTC
*
66182695 CTTTTCTTTCTTT
1 CTTTTCTTTC-TC
*
66182708 CTTTT-TTTTTC
1 CTTTTCTTTCTC
66182719 C-TTTCTTTCTC
1 CTTTTCTTTCTC
66182730 C
1 C
66182731 CTTCTGTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
10 3 0.10
11 8 0.27
12 13 0.43
13 6 0.20
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
CTTTTCTTTCTC
Found at i:66182715 original size:16 final size:15
Alignment explanation
Indices: 66182684--66182726 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
66182674 AACCCTTAGC
*
66182684 TTTTCTTTCTCCTTTT
1 TTTTCTTTCT-TTTTT
*
66182700 CTTTCTTTCTTTTTT
1 TTTTCTTTCTTTTTT
*
66182715 TTTCCTTTCTTT
1 TTTTCTTTCTTT
66182727 CTCCCTTCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTCTTTCTTTTTT
Found at i:66185242 original size:29 final size:30
Alignment explanation
Indices: 66185184--66185242 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
66185174 AGGGGAGGGG
* * **
66185184 AGTAAAAGTTTTGGGGGGAAAGTGGGAAAA
1 AGTAAAAGTTTTGAGGGAAAAGTGAAAAAA
66185214 AGTAAAAGTTTTGAGGGAAAAGT-AAAAAA
1 AGTAAAAGTTTTGAGGGAAAAGTGAAAAAA
66185243 CTCAACTCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.00, G:0.32, T:0.20
Consensus pattern (30 bp):
AGTAAAAGTTTTGAGGGAAAAGTGAAAAAA
Found at i:66186595 original size:28 final size:28
Alignment explanation
Indices: 66186560--66186615 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
66186550 GGGAAAGAGG
66186560 ACATCAGACTAAGGGTGGAAGAAGGATT
1 ACATCAGACTAAGGGTGGAAGAAGGATT
66186588 ACATCAGACTAAGGGTGGAAGAAGGATT
1 ACATCAGACTAAGGGTGGAAGAAGGATT
66186616 TTAAACTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.32, T:0.18
Consensus pattern (28 bp):
ACATCAGACTAAGGGTGGAAGAAGGATT
Found at i:66189970 original size:17 final size:16
Alignment explanation
Indices: 66189929--66189973 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
66189919 AATTAAAAAA
66189929 ATAAATATATACTAAAT
1 ATAAATAT-TACTAAAT
*
66189946 ATATAATATTACTCTAAT
1 ATA-AATATTACT-AAAT
66189964 ATAAATATTA
1 ATAAATATTA
66189974 AAATAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAAATATTACTAAAT
Found at i:66192548 original size:11 final size:11
Alignment explanation
Indices: 66192534--66192559 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66192524 TATTTTTTAA
66192534 TTTTAAAATAC
1 TTTTAAAATAC
66192545 TTTTAAAATAC
1 TTTTAAAATAC
66192556 TTTT
1 TTTT
66192560 TTTTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:66192562 original size:43 final size:42
Alignment explanation
Indices: 66192513--66192602 Score: 139
Period size: 43 Copynumber: 2.2 Consensus size: 42
66192503 TAAATATTTT
*
66192513 TATTTTTATTTT-A-TTTTTTAATTTTAAAATACTTTTAAAA
1 TATTTTTTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAA
*
66192553 TACTTTTTTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAA
1 TA-TTTTTTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAA
66192596 TATTTTT
1 TATTTTT
66192603 AAAATACTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 2 0.04
41 9 0.20
42 6 0.13
43 28 0.62
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (42 bp):
TATTTTTTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAA
Found at i:66192590 original size:17 final size:17
Alignment explanation
Indices: 66192545--66192593 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
66192535 TTTAAAATAC
66192545 TTTTAAAATACTTTTT--
1 TTTTAAAATA-TTTTTAA
* *
66192561 TTTT-TAATTTTTTTAA
1 TTTTAAAATATTTTTAA
66192577 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
66192594 AATATTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
14 5 0.19
15 3 0.12
16 8 0.31
17 10 0.38
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:66192591 original size:11 final size:11
Alignment explanation
Indices: 66192577--66192614 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
66192567 ATTTTTTTAA
66192577 TTTTAAAATAT
1 TTTTAAAATAT
66192588 TTTTAAAATAT
1 TTTTAAAATAT
66192599 TTTTAAAATACT
1 TTTTAAAATA-T
66192611 TTTT
1 TTTT
66192615 TAATTTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 21 0.81
12 5 0.19
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:66192615 original size:43 final size:43
Alignment explanation
Indices: 66192526--66192621 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
66192516 TTTTATTTTA
****
66192526 TTTTTTAATTTTAAAATACTTTTAAAATACTTTTTTTTTTAAT
1 TTTTTTAATTTTAAAATACTTTTAAAATACTTTTTAAAATAAT
* *
66192569 TTTTTTAATTTTAAAATATTTTTAAAATA-TTTTTAAAAT-AC
1 TTTTTTAATTTTAAAATACTTTTAAAATACTTTTTAAAATAAT
66192610 TTTTTTAATTTT
1 TTTTTTAATTTT
66192622 TGTTTTAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 13 0.28
42 6 0.13
43 28 0.60
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (43 bp):
TTTTTTAATTTTAAAATACTTTTAAAATACTTTTTAAAATAAT
Found at i:66192654 original size:54 final size:52
Alignment explanation
Indices: 66192532--66192647 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 52
66192522 TTTATTTTTT
* * * *
66192532 AATTTTAAAATACTTTTAAAATACTTTTTTTTTTAATTTTTTTAATTTTAAAA
1 AATTTTTAAATATTTTTAAAATACTTTTTTATTT-ATTGTTTTAATTTTAAAA
*
66192585 TATTTTTAAAATATTTTTAAAATACTTTTTTAATTT-TTGTTTTAATTTTTTAAATA
1 AATTTTT-AAATATTTTTAAAATACTTTTTT-ATTTATTGTTTTAA--TTTTAAA-A
66192641 AATTTTT
1 AATTTTT
66192648 TATATTTATT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
53 13 0.25
54 22 0.42
55 10 0.19
56 7 0.13
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (52 bp):
AATTTTTAAATATTTTTAAAATACTTTTTTATTTATTGTTTTAATTTTAAAA
Found at i:66196270 original size:20 final size:21
Alignment explanation
Indices: 66196225--66196272 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
66196215 ACTAATCCTC
66196225 ATTTAATTAGTAAAAATATTT
1 ATTTAATTAGTAAAAATATTT
*
66196246 CTTTATATTA-TAAAAATA-TT
1 ATTTA-ATTAGTAAAAATATTT
66196266 ATTTAAT
1 ATTTAAT
66196273 GAATTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 6 0.25
21 12 0.50
22 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTTAATTAGTAAAAATATTT
Found at i:66214365 original size:26 final size:26
Alignment explanation
Indices: 66214315--66214365 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
66214305 AAAAACATAA
* *
66214315 AATAGTTTTATATTTATATTCAAATT
1 AATAGTTTTATAATTAAATTCAAATT
* *
66214341 AATATTTTTATAATTAAATTTAAAT
1 AATAGTTTTATAATTAAATTCAAAT
66214366 AAAAAATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
AATAGTTTTATAATTAAATTCAAATT
Found at i:66221283 original size:96 final size:97
Alignment explanation
Indices: 66221157--66221349 Score: 271
Period size: 96 Copynumber: 2.0 Consensus size: 97
66221147 TTATATAATT
* * ** *
66221157 TATGTGTCTGAGCTCGATTGGAATTAGCATTGTTGTCAGTGCAGGATTATGTGAGTT-GAGTGCA
1 TATGTGTCTGAGCTCGATTGGAATTAGCATTGTTGCCAGTGCAGCAGGATGTAAGTTCGAGTGCA
* *
66221221 TTAAAGCGTATAATCTTCCTATTTAAAGGTTG
66 TTAAAGCGCATAATCTTCCTATTTAAAAGTTG
* * *
66221253 TATGTGTCTTAGCTCGATTGTAATTGGCATTGTTGCCAGTGCAGCAGGATGTAAGTTCGAGTGCA
1 TATGTGTCTGAGCTCGATTGGAATTAGCATTGTTGCCAGTGCAGCAGGATGTAAGTTCGAGTGCA
* *
66221318 TTGAAGCGCATTATCTTCCTATTTAAAAGTTG
66 TTAAAGCGCATAATCTTCCTATTTAAAAGTTG
66221350 GGGAGGGACT
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
96 49 0.58
97 35 0.42
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.37
Consensus pattern (97 bp):
TATGTGTCTGAGCTCGATTGGAATTAGCATTGTTGCCAGTGCAGCAGGATGTAAGTTCGAGTGCA
TTAAAGCGCATAATCTTCCTATTTAAAAGTTG
Found at i:66227136 original size:29 final size:30
Alignment explanation
Indices: 66227094--66227173 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 30
66227084 TGATTGAATC
*
66227094 AAATCAAAATTTCATGTATAAAATTGCACA-
1 AAATC-AAAGTTCATGTATAAAATTGCACAT
* *
66227124 AAATCAAAGTTCATGCATACAATTGCACATT
1 AAATCAAAGTTCATGTATAAAATTGCACA-T
* *
66227155 AAACCATAGTTCATGTATA
1 AAATCAAAGTTCATGTATA
66227174 GTTTTGAGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 21 0.50
30 5 0.12
31 16 0.38
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATAAAATTGCACAT
Found at i:66227328 original size:18 final size:18
Alignment explanation
Indices: 66227301--66227341 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
66227291 AATACCAAAC
*
66227301 AAATTAAAAATTATAAAG
1 AAATTAAAAATTATAAAA
* *
66227319 AAATTTAAAATTTTAAAA
1 AAATTAAAAATTATAAAA
66227337 AAATT
1 AAATT
66227342 CAAGTGATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AAATTAAAAATTATAAAA
Found at i:66228573 original size:13 final size:13
Alignment explanation
Indices: 66228555--66228581 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66228545 AATCCAAACC
66228555 AAAGAATTTCAAA
1 AAAGAATTTCAAA
66228568 AAAGAATTTCAAA
1 AAAGAATTTCAAA
66228581 A
1 A
66228582 TTTATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
AAAGAATTTCAAA
Found at i:66231550 original size:21 final size:22
Alignment explanation
Indices: 66231526--66231566 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
66231516 TTTTTAAAAA
*
66231526 AATATTTTAT-TTTTTTATTTT
1 AATATTTAATATTTTTTATTTT
66231547 AATATTTAATATTTTTTATT
1 AATATTTAATATTTTTTATT
66231567 GAAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
AATATTTAATATTTTTTATTTT
Found at i:66231580 original size:22 final size:22
Alignment explanation
Indices: 66231524--66231580 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
66231514 CATTTTTAAA
66231524 AAAATATTTTAT-TTTTTTATT
1 AAAATATTTTATATTTTTTATT
** *
66231545 TTAATATTTAATATTTTTTATT
1 AAAATATTTTATATTTTTTATT
66231567 GAAAAT-TTTTATAT
1 -AAAATATTTTATAT
66231581 ATGCATCTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 9 0.32
22 16 0.57
23 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
AAAATATTTTATATTTTTTATT
Found at i:66232171 original size:23 final size:24
Alignment explanation
Indices: 66232144--66232199 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
66232134 TACATTTTCA
*
66232144 ATTTTTTTTAAAAA-AAATTGTAC
1 ATTTTTTTAAAAAACAAATTGTAC
66232167 ATTTTTTTAAAAAACAAATTGTAC
1 ATTTTTTTAAAAAACAAATTGTAC
66232191 ATTTTTTTA
1 ATTTTTTTA
66232200 CAAGTCTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (24 bp):
ATTTTTTTAAAAAACAAATTGTAC
Found at i:66232831 original size:15 final size:16
Alignment explanation
Indices: 66232811--66232843 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
66232801 TTACCATGAA
*
66232811 TTTTTTATAAAT-ATT
1 TTTTTTAAAAATAATT
66232826 TTTTTTAAAAATAATT
1 TTTTTTAAAAATAATT
66232842 TT
1 TT
66232844 GAGCAATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTTAAAAATAATT
Found at i:66241439 original size:203 final size:200
Alignment explanation
Indices: 66241082--66241699 Score: 824
Period size: 203 Copynumber: 3.0 Consensus size: 200
66241072 ATTCGAGTTG
* * * * * *
66241082 AATCTTTATATGGTTCTTCGAATCAGAGATAATCCATGCAGAGCCTTGTGTGTGTTCGTAATGCT
1 AATCTTTATATGGTTCTTCGGATGA-AGATAATCTATGCAGAGCCTTGTTTGTGTTTGTGATGCT
* * * *
66241147 GTTTTTATATGAGGCAATTCTAGTTAGTAGGTATACGGTATTCCTGGTCGAGTGTCGAGCAAGTC
65 GTTTATAT-TG-GGCAATTCTAGTTAGTAGGCACAC-GTATTCC-GGTTGAGTGTCGAGCAAGTC
* * * *
66241212 CCGAAGATTTCAGGTACAAGAAAGGAAATGCATGTTGTTGTTGTGCATTTGTTTTGTATGTATAG
126 CCGAAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCATTTGTTTTGTATGTATAG
*
66241277 CCTGCGATGC
191 CCTGCAATGC
*
66241287 AATCTTTATATGGTTCTTCGGGCTGAAGATAATCTATGCAGAGCCTTGTTTGTGTTTGTGATGCT
1 AATCTTTATATGGTTCTTC-GGATGAAGATAATCTATGCAGAGCCTTGTTTGTGTTTGTGATGCT
* *
66241352 GTTTATGTTGGGCAATTCTAGTTAGTAGGCACACAGTGTTCACGGTTGAGTGTCGAGCAAGTCCC
65 GTTTATATTGGGCAATTCTAGTTAGTAGGCACAC-GTATTC-CGGTTGAGTGTCGAGCAAGTCCC
* * * *
66241417 AAAGATTTCAGGTTCGAGAAAGGCAATGTATTTTGTTGTTGTGCATGTGTTTTCTATGTATAGCC
128 GAAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCATTTGTTTTGTATGTATAGCC
66241482 TGCAATGC
193 TGCAATGC
* * *
66241490 AATCTTTATATGGTTCTTTGGATCGAAGATAATCTATGCAGAGCCTTGTTCGTGTTTGTGATACT
1 AATCTTTATATGGTTCTTCGGAT-GAAGATAATCTATGCAGAGCCTTGTTTGTGTTTGTGATGCT
* * * **
66241555 GTTTATATGGGGCAATTCTAGTTGGTAGGCACACGATATTCCCAGTTGAGTGTTAAGCAAGTCCC
65 GTTTATATTGGGCAATTCTAGTTAGTAGGCACACG-TATT-CCGGTTGAGTGTCGAGCAAGTCCC
* * **
66241620 GAAGATTTCAGGTACGAGAAAGGCGATATATTTTGTTGTTGTTTATTTGTTTTGTATGTATAGCC
128 GAAGATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCATTTGTTTTGTATGTATAGCC
66241685 TGCAATGC
193 TGCAATGC
66241693 AAT-TTTA
1 AATCTTTA
66241700 CTCTTTGCTT
Statistics
Matches: 366, Mismatches: 42, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
202 8 0.02
203 291 0.80
204 4 0.01
205 60 0.16
206 3 0.01
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (200 bp):
AATCTTTATATGGTTCTTCGGATGAAGATAATCTATGCAGAGCCTTGTTTGTGTTTGTGATGCTG
TTTATATTGGGCAATTCTAGTTAGTAGGCACACGTATTCCGGTTGAGTGTCGAGCAAGTCCCGAA
GATTTCAGGTACGAGAAAGGCAATGTATTTTGTTGTTGTGCATTTGTTTTGTATGTATAGCCTGC
AATGC
Done.