Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 225 of 228
Found at i:66542802 original size:32 final size:31
Alignment explanation
Indices: 66542757--66542816 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
66542747 CCTTAAACGT
66542757 TAAACCCTAAACCC-TAAACTACTAAACCCCA
1 TAAACCCTAAACCCTTAAACTA-TAAACCCCA
*
66542788 TAAACCCCTAAACCCTTAACCTATAAACC
1 TAAA-CCCTAAACCCTTAAACTATAAACC
66542817 TTTAAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.15
32 16 0.62
33 6 0.23
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.18
Consensus pattern (31 bp):
TAAACCCTAAACCCTTAAACTATAAACCCCA
Found at i:66542808 original size:7 final size:7
Alignment explanation
Indices: 66542743--66542911 Score: 61
Period size: 7 Copynumber: 22.9 Consensus size: 7
66542733 TCATAAATCT
*
66542743 TAAACCT
1 TAAACCC
**
66542750 TAAACGT
1 TAAACCC
66542757 TAAACCC
1 TAAACCC
66542764 TAAACCC
1 TAAACCC
*
66542771 TAAACTAC
1 TAAAC-CC
66542779 TAAACCCC
1 TAAA-CCC
66542787 ATAAACCCC
1 -TAAA-CCC
66542796 TAAACCC
1 TAAACCC
* *
66542803 TTAACCTA
1 TAAACC-C
*
66542811 TAAACCTT
1 TAAACC-C
66542819 TAAACCC
1 TAAACCC
*
66542826 AAAACCC
1 TAAACCC
* * *
66542833 GAAGCCAT
1 TAAACC-C
**
66542841 TACCCCC
1 TAAACCC
*
66542848 TAGACCC
1 TAAACCC
*
66542855 TAAGCCC
1 TAAACCC
*
66542862 ATAACCCC
1 -TAAACCC
66542870 TAAACCC
1 TAAACCC
**
66542877 TATGCTCC
1 TAAAC-CC
66542885 T-AACCAC
1 TAAACC-C
*
66542892 TAAACAC
1 TAAACCC
*
66542899 TAAACCA
1 TAAACCC
66542906 TAAACC
1 TAAACC
66542912 ACGAACGGTA
Statistics
Matches: 122, Mismatches: 31, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
6 1 0.01
7 75 0.61
8 37 0.30
9 9 0.07
ACGTcount: A:0.40, C:0.38, G:0.04, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:66542831 original size:23 final size:23
Alignment explanation
Indices: 66542787--66542831 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
66542777 ACTAAACCCC
**
66542787 ATAAACCCCTAAACCCTTAACCT
1 ATAAACCCCTAAACCCAAAACCT
**
66542810 ATAAACCTTTAAACCCAAAACC
1 ATAAACCCCTAAACCCAAAACC
66542832 CGAAGCCATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (23 bp):
ATAAACCCCTAAACCCAAAACCT
Found at i:66542888 original size:22 final size:22
Alignment explanation
Indices: 66542827--66542901 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
66542817 TTTAAACCCA
* *
66542827 AAACCCGAAG-CCATTACCCCCT
1 AAACCCTAAGCCCA-TAACCCCT
*
66542849 AGACCCTAAGCCCATAACCCCT
1 AAACCCTAAGCCCATAACCCCT
* *
66542871 AAACCCTATGCTCC-TAACCACT
1 AAACCCTAAGC-CCATAACCCCT
*
66542893 AAACACTAA
1 AAACCCTAA
66542902 ACCATAAACC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
22 38 0.88
23 5 0.12
ACGTcount: A:0.36, C:0.41, G:0.07, T:0.16
Consensus pattern (22 bp):
AAACCCTAAGCCCATAACCCCT
Found at i:66543015 original size:21 final size:22
Alignment explanation
Indices: 66542985--66543039 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
66542975 ATAAATCCTA
*
66542985 AAACCCTAAACTA-TAAA-AATT
1 AAACCTTAAA-TACTAAACAATT
*
66543006 AAACCTTAAATACTAAACACTT
1 AAACCTTAAATACTAAACAATT
*
66543028 AAACCTAAAATA
1 AAACCTTAAATA
66543040 AATGTATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 13 0.45
22 14 0.48
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (22 bp):
AAACCTTAAATACTAAACAATT
Found at i:66545475 original size:9 final size:9
Alignment explanation
Indices: 66545461--66545537 Score: 111
Period size: 9 Copynumber: 8.7 Consensus size: 9
66545451 TACGTGGATG
66545461 CAGATGATA
1 CAGATGATA
*
66545470 CAGATGCTA
1 CAGATGATA
*
66545479 CAGATGCTA
1 CAGATGATA
*
66545488 CAGATGCTA
1 CAGATGATA
*
66545497 TAGATGATA
1 CAGATGATA
66545506 CAGATGATA
1 CAGATGATA
66545515 CAGATGATA
1 CAGATGATA
66545524 CAGAT-ATA
1 CAGATGATA
66545532 CAGATG
1 CAGATG
66545538 CTACTAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
8 8 0.13
9 55 0.87
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.23
Consensus pattern (9 bp):
CAGATGATA
Found at i:66564278 original size:8 final size:8
Alignment explanation
Indices: 66564265--66564316 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
66564255 ATAATAAATA
66564265 TTTTTATT
1 TTTTTATT
66564273 TTTTTATT
1 TTTTTATT
*
66564281 TTTTCATT
1 TTTTTATT
**
66564289 TTAAAATATT
1 TT--TTTATT
66564299 TTTTTA-T
1 TTTTTATT
66564306 TTTTTATT
1 TTTTTATT
66564314 TTT
1 TTT
66564317 AAAATAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
7 7 0.20
8 23 0.66
10 5 0.14
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTATT
Found at i:66564305 original size:26 final size:26
Alignment explanation
Indices: 66564269--66564322 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
66564259 TAAATATTTT
66564269 TATTTTTTTATTTTTTCA-TTTTAAAA
1 TATTTTTTTATTTTTT-ATTTTTAAAA
66564295 TATTTTTTTATTTTTTATTTTTAAAA
1 TATTTTTTTATTTTTTATTTTTAAAA
66564321 TA
1 TA
66564323 AATTTTTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (26 bp):
TATTTTTTTATTTTTTATTTTTAAAA
Found at i:66564328 original size:26 final size:26
Alignment explanation
Indices: 66564273--66564329 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
66564263 TATTTTTATT
**
66564273 TTTTTATTTTTTCATTTTAAAATATT
1 TTTTTATTTTTTCATTTTAAAATAAA
66564299 TTTTTATTTTTT-ATTTTTAAAATAAA
1 TTTTTATTTTTTCA-TTTTAAAATAAA
66564325 TTTTT
1 TTTTT
66564330 GGTGTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (26 bp):
TTTTTATTTTTTCATTTTAAAATAAA
Found at i:66567099 original size:21 final size:21
Alignment explanation
Indices: 66567067--66567107 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66567057 AGGCTCGAGG
66567067 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
66567088 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
66567108 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:66574454 original size:21 final size:21
Alignment explanation
Indices: 66574422--66574462 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66574412 GAACATTTGG
66574422 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
66574443 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
66574463 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:66584142 original size:4 final size:4
Alignment explanation
Indices: 66584133--66584166 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
66584123 AAGTTTTATT
66584133 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
66584167 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:66584174 original size:22 final size:22
Alignment explanation
Indices: 66584116--66584175 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
66584106 AAGTGGCCCA
*
66584116 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
66584140 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
66584161 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
66584176 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:66586522 original size:18 final size:18
Alignment explanation
Indices: 66586501--66586539 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
66586491 GATTGAGAGT
* *
66586501 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
66586519 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
66586537 GAA
1 GAA
66586540 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:66587948 original size:4 final size:4
Alignment explanation
Indices: 66587939--66587972 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
66587929 AAGTTTTATT
66587939 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
66587973 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:66587980 original size:22 final size:22
Alignment explanation
Indices: 66587922--66587981 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
66587912 AAGTGGCCCA
*
66587922 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
66587946 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
66587967 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
66587982 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:66591205 original size:21 final size:21
Alignment explanation
Indices: 66591173--66591213 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66591163 AGGCTCGAGG
66591173 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
66591194 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
66591214 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:66596669 original size:83 final size:82
Alignment explanation
Indices: 66596509--66596674 Score: 289
Period size: 83 Copynumber: 2.0 Consensus size: 82
66596499 GTTGTAGTCT
66596509 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
1 CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
*
66596574 TTTCTTGTTGGTCAAAA
66 TTTCTTGCTGGTCAAAA
*
66596591 CCCATTGGAAGACCTTGACTTGGAAATTAACAC-CCATCATTATCATCATCGTCATTTGGAACAA
1 CCCATTGGAAGACCTTGACTTGGAAATTAACACACC--CATCATCATCATCGTCATTTGGAACAA
66596655 GTTTTCTTGCTGGTCAAAA
64 GTTTTCTTGCTGGTCAAAA
66596674 C
1 C
66596675 TCCCTTTTAA
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
81 2 0.03
82 33 0.41
83 45 0.56
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (82 bp):
CCCATTGGAAGACCTTGACTTGGAAATTAACACACCCATCATCATCATCGTCATTTGGAACAAGT
TTTCTTGCTGGTCAAAA
Found at i:66598084 original size:3 final size:3
Alignment explanation
Indices: 66598076--66598104 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
66598066 TCTTCCATGG
66598076 CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
66598105 ACTCTAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:66602570 original size:9 final size:9
Alignment explanation
Indices: 66602556--66602625 Score: 104
Period size: 9 Copynumber: 7.8 Consensus size: 9
66602546 ATGCAGAGAG
66602556 TGATACAGA
1 TGATACAGA
66602565 TGATACAGA
1 TGATACAGA
* *
66602574 TGTTATAGA
1 TGATACAGA
66602583 TGATACAGA
1 TGATACAGA
66602592 TGATACAGA
1 TGATACAGA
*
66602601 TGGTACAGA
1 TGATACAGA
*
66602610 TGGTACAGA
1 TGATACAGA
66602619 TGATACA
1 TGATACA
66602626 AATGCTACTG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 55 1.00
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (9 bp):
TGATACAGA
Found at i:66607593 original size:20 final size:19
Alignment explanation
Indices: 66607568--66607640 Score: 56
Period size: 22 Copynumber: 3.4 Consensus size: 19
66607558 TAATGGAGTT
66607568 TTTTAAAAAATGTATGATAA
1 TTTTAAAAAATGTAT-ATAA
*
66607588 TTTTAAAACATGTTAGTAATAA
1 TTTTAAAAAATG-TA-T-ATAA
*
66607610 TTTAAAAATAATAGTATATTACA
1 TTTTAAAA-AAT-GTATA-TA-A
66607633 TTTTAAAA
1 TTTTAAAA
66607641 TCATATTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 11 0.26
21 3 0.07
22 15 0.36
23 12 0.29
24 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (19 bp):
TTTTAAAAAATGTATATAA
Found at i:66609120 original size:50 final size:50
Alignment explanation
Indices: 66609058--66609259 Score: 264
Period size: 50 Copynumber: 4.0 Consensus size: 50
66609048 AGGGAGATAG
* * *
66609058 GATTTGCTGTTGTAGCTTCAATCTGTTTAACTGCAATGTCGGGGAAGTAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
* ** *
66609108 GATTCG-TCGTTGTAGCTTCAATCTGTTCCACTACACCG-CTAGGGAAGTAA
1 GATTCGCT-GTTGTAGCTTCAATCTGTTCAACTACAATGTC-GGGGAAGTAA
*
66609158 GATTCGCTGTTGTAGTTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
* * * *
66609208 GATTCGCTGTTGTAACTTCAATCTGTTCCACTACAATGTCGGAGAAATAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
66609258 GA
1 GA
66609260 AAATCTATCA
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 2 0.02
50 127 0.97
51 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (50 bp):
GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAA
Found at i:66609195 original size:100 final size:100
Alignment explanation
Indices: 66609058--66609242 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
66609048 AGGGAGATAG
* * *
66609058 GATTTGCTGTTGTAGCTTCAATCTGTTTAACTGCAATGTCGGGGAAGTAAGATTCG-TCGTTGTA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCT-GTTGTA
*
66609122 GCTTCAATCTGTTCCACTACACCGCTAGGGAAGTAA
65 ACTTCAATCTGTTCCACTACACCGCTAGGGAAGTAA
*
66609158 GATTCGCTGTTGTAGTTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCTGTTGTAA
1 GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCTGTTGTAA
66609223 CTTCAATCTGTTCCACTACA
66 CTTCAATCTGTTCCACTACA
66609243 ATGTCGGAGA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 78 0.99
101 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (100 bp):
GATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCGGGGAAGTAAGATTCGCTGTTGTAA
CTTCAATCTGTTCCACTACACCGCTAGGGAAGTAA
Found at i:66609259 original size:100 final size:100
Alignment explanation
Indices: 66609034--66609243 Score: 305
Period size: 100 Copynumber: 2.1 Consensus size: 100
66609024 TTCGATCCAA
* * * * * * *
66609034 TCCACTGCAACGTTAGGGAGATAGGATTTGCTGTTGTAGCTTCAATCTGTTTAACTGCAATGTCG
1 TCCACTACAACGCTAGGGAAATAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCG
*
66609099 GGGAAGTAAGATTCGTCGTTGTAGCTTCAATCTGT
66 GGGAAGTAAGATTCGTCGTTGTAACTTCAATCTGT
* * *
66609134 TCCACTACACCGCTAGGGAAGTAAGATTCGCTGTTGTAGTTTCAATCTGTTCAACTACAATGTCG
1 TCCACTACAACGCTAGGGAAATAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCG
66609199 GGGAAGTAAGATTCG-CTGTTGTAACTTCAATCTGT
66 GGGAAGTAAGATTCGTC-GTTGTAACTTCAATCTGT
66609234 TCCACTACAA
1 TCCACTACAA
66609244 TGTCGGAGAA
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 1 0.01
100 96 0.99
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
TCCACTACAACGCTAGGGAAATAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTACAATGTCG
GGGAAGTAAGATTCGTCGTTGTAACTTCAATCTGT
Found at i:66619765 original size:56 final size:56
Alignment explanation
Indices: 66619679--66619791 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
66619669 CTCGGAGCTT
66619679 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
1 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
66619735 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
1 CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
66619791 C
1 C
66619792 TTTGCAGATC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (56 bp):
CCACCATATATGCAAAACTTGAATGTACAATGCTGCACATCATTAGAAAAAGTTTC
Found at i:66627715 original size:189 final size:189
Alignment explanation
Indices: 66627319--66627836 Score: 840
Period size: 189 Copynumber: 2.7 Consensus size: 189
66627309 GTGGTTGCCC
* * * * *
66627319 AATTGAAGAAGTGTCGTTGCCTTTCGACCCCCTATGTAATCTTCAGCACTTAAAAATGAGTGGCT
1 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
* * * *
66627384 CAGCGGTCAAAAATGTATTGATCAAGTTGGAATCCATTCGCAAACTGAATCTTAGTGGATGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
*
66627449 AT-GTCAAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
131 ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
* **
66627507 AATTGAAGAAGTGTCGTTGCCGTTCGACTCTCTATGTAATCTTCAGCTTTTAAATATGAGTAGCT
1 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
66627572 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
* *
66627637 CTGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAGAATTAAACTTATCTGGCACTCA
131 ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
66627696 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
1 AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
* * * * *
66627761 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCTCTTCATTATCTGGATCTTAGTGGTTGCCCA
66 CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
*
66627826 AAGGTCGAATT
131 ATGGTCGAATT
66627837 ACTCTCAGAG
Statistics
Matches: 305, Mismatches: 24, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
188 120 0.39
189 185 0.61
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (189 bp):
AATTGAAGAAGTGTCGTTGCCATTCGACTCTCTATGTAATCTTCAGCACTTAAATATGAGTAGCT
CAGCGGTCAAAAATGTATCGATCAAGTTGGAATCCCTTCGTAAACTGAATCTTAGTGGTTGCCCA
ATGGTCGAATTTCCAGAAATCCCAGGAAGCTTAATAAAATTAAACTTATCTGGCACTCA
Found at i:66629093 original size:3 final size:3
Alignment explanation
Indices: 66629085--66629122 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
66629075 TGATTTTTTC
*
66629085 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
66629123 TTCTCATCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:66638597 original size:18 final size:18
Alignment explanation
Indices: 66638542--66638598 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
66638532 CCCAACTACT
* *
66638542 GTATACGTGAACAGTACT
1 GTATACGTGAATAGTACC
*
66638560 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
66638578 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
66638596 GTA
1 GTA
66638599 AACGGTCGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:66642464 original size:9 final size:9
Alignment explanation
Indices: 66642446--66642490 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
66642436 GGATGCAGAG
66642446 AGATGCTAC
1 AGATGCTAC
*
66642455 AGATGATAC
1 AGATGCTAC
66642464 AGATGCTAC
1 AGATGCTAC
*
66642473 AGATGGTAC
1 AGATGCTAC
66642482 AGATGCTAC
1 AGATGCTAC
66642491 TGAAAAGAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (9 bp):
AGATGCTAC
Found at i:66642469 original size:18 final size:18
Alignment explanation
Indices: 66642446--66642490 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
66642436 GGATGCAGAG
66642446 AGATGCTACAGATGATAC
1 AGATGCTACAGATGATAC
*
66642464 AGATGCTACAGATGGTAC
1 AGATGCTACAGATGATAC
66642482 AGATGCTAC
1 AGATGCTAC
66642491 TGAAAAGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (18 bp):
AGATGCTACAGATGATAC
Found at i:66646162 original size:21 final size:21
Alignment explanation
Indices: 66646134--66646188 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
66646124 AACAGCGGTG
*
66646134 GCAGTGAGATTAGTTACTATA
1 GCAGTGAGATTAGGTACTATA
* * *
66646155 GCGGTGAGATTGGGTACTGTA
1 GCAGTGAGATTAGGTACTATA
66646176 GCAGTGAGATTAG
1 GCAGTGAGATTAG
66646189 AAACAGCGGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.09, G:0.35, T:0.29
Consensus pattern (21 bp):
GCAGTGAGATTAGGTACTATA
Found at i:66650583 original size:8 final size:8
Alignment explanation
Indices: 66650570--66650597 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
66650560 AACAGCATAA
66650570 TCCACAAT
1 TCCACAAT
66650578 TCCACAAT
1 TCCACAAT
66650586 TCCACAAT
1 TCCACAAT
66650594 TCCA
1 TCCA
66650598 AGTTAATGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (8 bp):
TCCACAAT
Found at i:66654970 original size:27 final size:27
Alignment explanation
Indices: 66654917--66654970 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
66654907 TATTATTTGA
* * *
66654917 TAATTTTTAAATTCATTTTTATTTTTT
1 TAATTTTTAAATTCACTTTCATATTTT
66654944 TAATTTTTAAATT-ACTTTCACTATTTT
1 TAATTTTTAAATTCACTTTCA-TATTTT
66654971 AAATATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (27 bp):
TAATTTTTAAATTCACTTTCATATTTT
Found at i:66658359 original size:15 final size:15
Alignment explanation
Indices: 66658339--66658368 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66658329 TGGAACAACT
66658339 TTGGGATGGACATCA
1 TTGGGATGGACATCA
66658354 TTGGGATGGACATCA
1 TTGGGATGGACATCA
66658369 GGTATGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (15 bp):
TTGGGATGGACATCA
Found at i:66660055 original size:426 final size:426
Alignment explanation
Indices: 66658975--66660166 Score: 1317
Period size: 426 Copynumber: 2.8 Consensus size: 426
66658965 CAAATAATCA
* * * * * * *
66658975 TAAAGTTTTTAAAAAATAAATATGAAAGATTTTA---TA--TAAATTAGTGGCATCATTTGATCT
1 TAAAGTTTTTAAAAAATAAATATAAAATATTTTATTTTATTTAGATAAGTGACATCGTTTGATTT
* * * * * *
66659035 ATTAATTGTGAGTTAATTTTGACATCCAATACATCAAATATGAATTTTTATTTTTCT-TAGTACT
66 ATTAATTGTGGGTGAATTTTCACA-CCGATACATCAAATATAAATTTTTATTTTTCTATAGTATT
*
66659099 ATAATTATTTATTTCCTTTTTCATTTCTTACAGCTTAAAGTAAGTAGTTAATGCTTAAAAGTAAT
130 ATAATTATTTATTTCC-TTTTCATTTTTTAC--C---AAGT-AGT-G---ATGCTTAAAAGTAAT
* * * * *
66659164 ACAAATATTGTTTCTATACAGGAGCTTGTTAATTTAAGGGAAATTTACGTTGC-A-GAATGCAAT
184 AC-ACTATTTTTTCTATACAGGA-CTTGTTAATTTAA-GGAAATTAACGTT-CAATGAGTGC-GT
* ** * * *
66659227 AATTTAAGGAAGATATGTAATCTTTCGAGAGCCATCAACCTTGAATCCCTTGATTGCACTGACTG
244 AATTTAAGGAAAATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTG
* * * *
66659292 TCAAAGTTTGGTTGAACTTGGGAATGAAGGTGATCGTACGGTATGCGTTTTCATACTTTTCTTCA
309 TAAAAGTTTGGTTGAACTTGGGAACGAAGATGATCGTACGGTATGCATTTTCATACTTTTCTTCA
*
66659357 AAAAATATGATTTATAATTTGATGTATCAAATATTCATATAATAACATTTTATT
374 AAAAATA-GATATATAATTTGATGTATCAAATATTCATATAATAACATTTTATT
* * *
66659411 T--AGTCTTTAAAAAATAAATATAAAATAATTTATTTTATTTAGATAAGTGACATCGTTTAATTT
1 TAAAGTTTTTAAAAAATAAATATAAAATATTTTATTTTATTTAGATAAGTGACATCGTTTGATTT
* * * * *
66659474 ATTACTTGTGGGAGAATTTTCACGCCGGATACATTAAATATAAATTTTTATTTTTGTATAGTATT
66 ATTAATTGTGGGTGAATTTTCACACC-GATACATCAAATATAAATTTTTATTTTTCTATAGTATT
* * * * *
66659539 ATAATTATTTCTTTCCTTTCCATTTTTTACTAAATAGTTGATGTTTAAAAGTAATACACTTATTT
130 ATAATTATTTATTTCCTTTTCATTTTTTACCAAGTAG-TGATGCTTAAAAGTAATACAC-TATTT
* * * **
66659604 TTTCTATACAGGATTTCGTTAATTTAAGGCAAATTGAC-TTCAATGGGTGCGTGAGCTTAAGGAA
193 TTTCTATACAGGACTT-GTTAATTTAAGG-AAATTAACGTTCAATGAGTGCGT-AATTTAAGGAA
*
66659668 AATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCTCTAACTGTAAAAGTTTGG
255 AATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTGTAAAAGTTTGG
* * * * * * *
66659733 TTGAACTTTGGAACGGAGATGATTGTATGGTATGTATTTTCATACTTTTTTTTGAAAAAA-A-A-
320 TTGAACTTGGGAACGAAGATGATCGTACGGTATGCATTTTCATAC-TTTTCTTCAAAAAATAGAT
* *
66659795 ATATATTTTGATGTAT-AAATATTCATATGATAACATTTTATT
384 ATATAATTTGATGTATCAAATATTCATATAATAACATTTTATT
* *
66659837 TAAAGTTTTTAAAAAATAAATATAAAATATTTTATTTTATTTAGATGAGTGACATTGTTTGATTT
1 TAAAGTTTTTAAAAAATAAATATAAAATATTTTATTTTATTTAGATAAGTGACATCGTTTGATTT
66659902 ATTAATTGTGGGTGAATTTTCACACCGATA-AGTCAAATATAAATTTTTATTTTT-TATAGTATT
66 ATTAATTGTGGGTGAATTTTCACACCGATACA-TCAAATATAAATTTTTATTTTTCTATAGTATT
*
66659965 ATAATTATTTATTTCCTTTTCATTTTTTACCAAGTAGCTGATGCTTGAAAGTAATACAGCTATTT
130 ATAATTATTTATTTCCTTTTCATTTTTTACCAAGTAG-TGATGCTTAAAAGTAATACA-CTATTT
* * * * *
66660030 TTTCTGTACAGGACCTTGATAATTTAACGGTAATTAACGTTTCAA--ATTGTAGTAATTTAA-GA
193 TTTCTATACAGGA-CTTGTTAATTTAA-GGAAATTAACG-TTCAATGAGTG-CGTAATTTAAGGA
* * * *
66660092 AAGATGCCTGATCTTTCAAGAGCCATCAACCTTGAATTCCTTGATTGCACTAACTGTAAAAGTCT
254 AA-ATACCTAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTGTAAAAGTTT
66660157 GGTTGAACTT
318 GGTTGAACTT
66660167 CCTTGCCTCG
Statistics
Matches: 643, Mismatches: 88, Indels: 60
0.81 0.11 0.08
Matches are distributed among these distances:
425 4 0.01
426 193 0.30
427 46 0.07
428 87 0.14
429 9 0.01
430 158 0.25
431 12 0.02
433 3 0.00
434 31 0.05
436 1 0.00
437 2 0.00
438 2 0.00
439 74 0.12
440 21 0.03
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (426 bp):
TAAAGTTTTTAAAAAATAAATATAAAATATTTTATTTTATTTAGATAAGTGACATCGTTTGATTT
ATTAATTGTGGGTGAATTTTCACACCGATACATCAAATATAAATTTTTATTTTTCTATAGTATTA
TAATTATTTATTTCCTTTTCATTTTTTACCAAGTAGTGATGCTTAAAAGTAATACACTATTTTTT
CTATACAGGACTTGTTAATTTAAGGAAATTAACGTTCAATGAGTGCGTAATTTAAGGAAAATACC
TAATCTTTCAAGAGCCATCAACCTTGAATACCTTGATTGCACTAACTGTAAAAGTTTGGTTGAAC
TTGGGAACGAAGATGATCGTACGGTATGCATTTTCATACTTTTCTTCAAAAAATAGATATATAAT
TTGATGTATCAAATATTCATATAATAACATTTTATT
Found at i:66670212 original size:189 final size:188
Alignment explanation
Indices: 66669982--66670807 Score: 1214
Period size: 189 Copynumber: 4.4 Consensus size: 188
66669972 CAATATTTCA
* *
66669982 AAGTTGGAATTCCTTCATCAATTGGATCTTAGTGATTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATC-AATTTCCAGAAATCCC
66670047 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
*
66670112 CCCTATATAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
130 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
*
66670171 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATTCAATTTCCCGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGA-TCAATTTCCAGAAATCCC
* *
66670236 AGGAAGCTTAACAGAATTAAACTTATCTGGAACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
66670301 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
130 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
*
66670360 AAGTTGGAATCCCTTCGTCAATTGGACCTTAGTGATTGCCCAATGATTCAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGA-TCAATTTCCAGAAATCCC
** *
66670425 CGGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAAAAGTGTCCTTGCCTTTCGACT
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACT
* * * *
66670490 CCCTATGTAATCTTCGGAATTTAAATATGAGGGGCTCAAAGGTAAAAGATGTATCGATC
130 CCCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
* * * * *
66670549 AAGTTGGAATCCCTTCGTAAACTGAATCTTAGTAAGTGCCCAATGATCAAATTTCCAGAAATCCC
1 AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATC-AATTTCCAGAAATCCC
* *
66670614 AAGAAGCTTAATAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCATTGCC-TTCGGAC
65 AAGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTC-GAC
* * * * * *
66670678 TCACTATGTAATCTTCAGG-ACTTAGATATGAGTG-GCTC-TGCAGT-CAAAACTGTATCGATC
129 TCCCTATGTAATCTTC-GGAATTTAAATATGAG-GAGCTCAAG-GGTAAAAAAC-GTATCGATC
* * * * * *
66670738 AAGTTGGAATCTCTTCGT-TATCTGGATCTTAGTGGTTGCCCAATGGTCGAATTTCCAGAATTTC
1 AAGTTGGAATCCCTTCGTCAAT-TGGATCTTAGTGATTGCCCAATGATC-AATTTCCAGAAATCC
66670802 CAAGAA
64 CAAGAA
66670808 TTCCATGGGA
Statistics
Matches: 583, Mismatches: 46, Indels: 16
0.90 0.07 0.02
Matches are distributed among these distances:
188 9 0.02
189 569 0.98
190 5 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (188 bp):
AAGTTGGAATCCCTTCGTCAATTGGATCTTAGTGATTGCCCAATGATCAATTTCCAGAAATCCCA
AGAAGCTTAACAGAATTAAACTTATCTGGCACTCAAATTGAAGAAGTGTCCTTGCCTTTCGACTC
CCTATGTAATCTTCGGAATTTAAATATGAGGAGCTCAAGGGTAAAAAACGTATCGATC
Found at i:66678365 original size:46 final size:46
Alignment explanation
Indices: 66678298--66678388 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
66678288 TCATATCTCG
* *
66678298 TCAATATTGGAATAAGAAGCTACTTGCAGGTGAAATCGATATTGTA
1 TCAATATTGGAATAAGAAGCTACTTGCAGATGAAATCAATATTGTA
*
66678344 TCAATATTGGAATAAGAAGCTACTTGTAGATGAAATCAATATTGT
1 TCAATATTGGAATAAGAAGCTACTTGCAGATGAAATCAATATTGT
66678389 GTCTCTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (46 bp):
TCAATATTGGAATAAGAAGCTACTTGCAGATGAAATCAATATTGTA
Found at i:66679316 original size:16 final size:16
Alignment explanation
Indices: 66679295--66679332 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
66679285 GACGAGGCAC
*
66679295 TGAATGTCTTCTTCGA
1 TGAATGTCTTCCTCGA
*
66679311 TGAATGTCTTCCTCGT
1 TGAATGTCTTCCTCGA
66679327 TGAATG
1 TGAATG
66679333 AAGACATGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (16 bp):
TGAATGTCTTCCTCGA
Found at i:66679642 original size:22 final size:23
Alignment explanation
Indices: 66679616--66679663 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
66679606 TATTTTAGGA
* * *
66679616 TGTGATT-AGGGATTTGATTTGC
1 TGTGATTAAGGAATTTAATATGC
66679638 TGTGATTAAGGAATTTAATATGC
1 TGTGATTAAGGAATTTAATATGC
66679661 TGT
1 TGT
66679664 ACGAGTGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.25, C:0.04, G:0.27, T:0.44
Consensus pattern (23 bp):
TGTGATTAAGGAATTTAATATGC
Found at i:66681845 original size:20 final size:20
Alignment explanation
Indices: 66681820--66681869 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
66681810 TGGCTTAAAA
66681820 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
66681840 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
66681857 GTGGTAGTGGATT
1 TTGGTAGTGGATT
66681870 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:66686484 original size:20 final size:20
Alignment explanation
Indices: 66686459--66686508 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
66686449 TGGCTTAAAA
66686459 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
66686479 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
66686496 GTGGTAGTGGATT
1 TTGGTAGTGGATT
66686509 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:66687498 original size:2 final size:2
Alignment explanation
Indices: 66687491--66687516 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
66687481 ATGCTTGATA
66687491 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
66687517 TTATTAGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66702624 original size:141 final size:141
Alignment explanation
Indices: 66702140--66702653 Score: 704
Period size: 141 Copynumber: 3.7 Consensus size: 141
66702130 TTAATGACCC
* * *
66702140 AGATTATATGAGTGTTAAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTC-AA-A-ATA
1 AGATTGTATGGGTGTTAAATATTTTAGTGATGAAAGTAGAATCATTGTAACATCTCAAATAGATA
*
66702202 AAGATGGGTTAACAAGGTAAAGGACTTTCTT-AGGTCTTTTGTTGTCATTGATGATGTTAATGAC
66 AAGATGGGTTAACAAGGTAAAGGACTTTCTTCAGGTCTTTTGTTGTCATTGATGATGATAATGAC
* *
66702266 CCATATTTGAT
131 CCAGATTAGAT
* * *
66702277 AGATTGTATGGGTGTTAAATATTTTAGTGATGGAAGTAGAATCATTGTAACATCTCGAGATAGAC
1 AGATTGTATGGGTGTTAAATATTTTAGTGATGAAAGTAGAATCATTGTAACATCTC-AAATAGAT
* * *
66702342 AAAGATGGGTTAATAAGGAAAAGGACTTTCTTCAGG---TTTGTTGTCCTTGATGAT-ATTAATG
65 AAAGATGGGTTAACAAGGTAAAGGACTTTCTTCAGGTCTTTTGTTGTCATTGATGATGA-TAATG
66702403 ACCCAGATTAGAT
129 ACCCAGATTAGAT
*
66702416 AGATTGTATGGGTGTTAAATATTTTAGTGATGATGAAAGTAGAATCATTGTAACATCCCAAAATA
1 AGATTGTATGGGTGTTAAATATTTTA--G-TGATGAAAGTAGAATCATTGTAACATCTC-AAATA
* * *
66702481 GATAAAGATGGGTTAATAGGGTAAAGGACTTTCTTCAGGTCTTTTGTTTTCATTGATGATGATAA
62 GATAAAGATGGGTTAACAAGGTAAAGGACTTTCTTCAGGTCTTTTGTTGTCATTGATGATGATAA
*
66702546 TGACCTAGATTAG-T
127 TGACCCAGATTAGAT
* *
66702560 AGATTGTATAGGTGTTAAATATTTTGGTGATGAAAGTAGAATCATTGTAACATCTCAATATAGAT
1 AGATTGTATGGGTGTTAAATATTTTAGTGATGAAAGTAGAATCATTGTAACATCTCAA-ATAGAT
* * *
66702625 AATGATGGGTTAACAGGGTAAAGGTCTTT
65 AAAGATGGGTTAACAAGGTAAAGGACTTT
66702654 GCTTAATCTT
Statistics
Matches: 337, Mismatches: 26, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
137 54 0.16
139 60 0.18
140 3 0.01
141 92 0.27
142 71 0.21
144 25 0.07
145 31 0.09
146 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (141 bp):
AGATTGTATGGGTGTTAAATATTTTAGTGATGAAAGTAGAATCATTGTAACATCTCAAATAGATA
AAGATGGGTTAACAAGGTAAAGGACTTTCTTCAGGTCTTTTGTTGTCATTGATGATGATAATGAC
CCAGATTAGAT
Found at i:66709071 original size:4 final size:4
Alignment explanation
Indices: 66709062--66709088 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
66709052 ATTTTCACTC
66709062 TTAT TTAT TTAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA
66709089 AGGGAAGCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:66709724 original size:75 final size:75
Alignment explanation
Indices: 66709633--66709772 Score: 235
Period size: 75 Copynumber: 1.9 Consensus size: 75
66709623 CTCAAACTGA
66709633 CACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAACGATGAAGGTCTTCT
1 CACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAACGATGAAGGTCTTCT
66709698 TCTTATTCTT
66 TCTTATTCTT
* * * * *
66709708 CACATGCTTTAACTTCATCACTCATCTACTCAAAGCTTTGAAAGAGGTAATGATGAATGTCTTCT
1 CACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAACGATGAAGGTCTTCT
66709773 CCCATGATGA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (75 bp):
CACATGCCTTAACTTCATCACTCATCTACTCAAAGCTGTGAAAGAGGCAACGATGAAGGTCTTCT
TCTTATTCTT
Found at i:66720267 original size:20 final size:20
Alignment explanation
Indices: 66720242--66720281 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
66720232 ACATAAACAA
66720242 GCCACCTAAACTAGTCATTC
1 GCCACCTAAACTAGTCATTC
66720262 GCCACCTAAACTAGTCATTC
1 GCCACCTAAACTAGTCATTC
66720282 AACACCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.35, G:0.10, T:0.25
Consensus pattern (20 bp):
GCCACCTAAACTAGTCATTC
Found at i:66720287 original size:20 final size:20
Alignment explanation
Indices: 66720244--66720290 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
66720234 ATAAACAAGC
**
66720244 CACCTAAACTAGTCATTCGC
1 CACCTAAACTAGTCATTCAA
66720264 CACCTAAACTAGTCATTCAA
1 CACCTAAACTAGTCATTCAA
66720284 CACCTAA
1 CACCTAA
66720291 TGCATCAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.34, G:0.06, T:0.23
Consensus pattern (20 bp):
CACCTAAACTAGTCATTCAA
Found at i:66722796 original size:14 final size:14
Alignment explanation
Indices: 66722777--66722825 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
66722767 TACTAAGGAA
66722777 GATTTTCTTAGCCT
1 GATTTTCTTAGCCT
*
66722791 GATTTTCTTTA---A
1 GATTTTC-TTAGCCT
*
66722803 GATTTTCTTGGCCT
1 GATTTTCTTAGCCT
66722817 GATTTTCTT
1 GATTTTCTT
66722826 TAAGCCAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
11 2 0.07
12 7 0.25
14 16 0.57
15 3 0.11
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.55
Consensus pattern (14 bp):
GATTTTCTTAGCCT
Found at i:66722811 original size:26 final size:26
Alignment explanation
Indices: 66722775--66722829 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
66722765 CATACTAAGG
66722775 AAGATTTTCTTAGCCTGATTTTCTTT
1 AAGATTTTCTTAGCCTGATTTTCTTT
*
66722801 AAGATTTTCTTGGCCTGATTTTCTTT
1 AAGATTTTCTTAGCCTGATTTTCTTT
66722827 AAG
1 AAG
66722830 CCAAAGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.51
Consensus pattern (26 bp):
AAGATTTTCTTAGCCTGATTTTCTTT
Found at i:66723927 original size:35 final size:34
Alignment explanation
Indices: 66723875--66723959 Score: 93
Period size: 35 Copynumber: 2.4 Consensus size: 34
66723865 ACGGTCGAGG
* *
66723875 AAAATCTAAGGGA-TTGGGG-ATTTTGATTTAGGGAA
1 AAAAT-TAAGGGATTTGGGGAATTTT--TTAAGAGAA
66723910 AAAATTAAGGGATTTGGGGAAATTTTTTAAGAGAA
1 AAAATTAAGGGATTTGGGG-AATTTTTTAAGAGAA
*
66723945 AAAAATAAGGGATTT
1 AAAATTAAGGGATTT
66723960 CAAGGAAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
34 7 0.16
35 32 0.73
37 5 0.11
ACGTcount: A:0.41, C:0.01, G:0.27, T:0.31
Consensus pattern (34 bp):
AAAATTAAGGGATTTGGGGAATTTTTTAAGAGAA
Found at i:66724380 original size:23 final size:23
Alignment explanation
Indices: 66724353--66724403 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
66724343 ATAAATCAAA
*
66724353 TTTAA-TACTTAATATTTTAATTT
1 TTTAATTACTTAACA-TTTAATTT
**
66724376 TTTAATTTTTTAACATTTAATTT
1 TTTAATTACTTAACATTTAATTT
66724399 TTTAA
1 TTTAA
66724404 CTTATCATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTAATTACTTAACATTTAATTT
Found at i:66724385 original size:15 final size:16
Alignment explanation
Indices: 66724361--66724403 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
66724351 AATTTAATAC
* **
66724361 TTAATATTTTAATTTT
1 TTAATTTTTTAATCAT
66724377 TTAATTTTTTAA-CAT
1 TTAATTTTTTAATCAT
66724392 TTAATTTTTTAA
1 TTAATTTTTTAA
66724404 CTTATCATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATTTTTTAATCAT
Found at i:66724393 original size:10 final size:8
Alignment explanation
Indices: 66724361--66724403 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
66724351 AATTTAATAC
*
66724361 TTAATATT
1 TTAATTTT
66724369 TTAATTTT
1 TTAATTTT
66724377 TTAATTTT
1 TTAATTTT
**
66724385 TTAA-CAT
1 TTAATTTT
66724392 TTAATTTT
1 TTAATTTT
66724400 TTAA
1 TTAA
66724404 CTTATCATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
7 5 0.17
8 24 0.83
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (8 bp):
TTAATTTT
Found at i:66724404 original size:15 final size:15
Alignment explanation
Indices: 66724376--66724404 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66724366 ATTTTAATTT
66724376 TTTAATTTTTTAACA
1 TTTAATTTTTTAACA
66724391 TTTAATTTTTTAAC
1 TTTAATTTTTTAAC
66724405 TTATCATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAATTTTTTAACA
Found at i:66728206 original size:20 final size:20
Alignment explanation
Indices: 66728181--66728230 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
66728171 TGGCTTAAAA
66728181 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
66728201 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
66728218 GTGGTAGTGGATT
1 TTGGTAGTGGATT
66728231 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:66732845 original size:20 final size:20
Alignment explanation
Indices: 66732820--66732869 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
66732810 TGGCTTAAAA
66732820 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
66732840 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
66732857 GTGGTAGTGGATT
1 TTGGTAGTGGATT
66732870 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:66733456 original size:14 final size:16
Alignment explanation
Indices: 66733421--66733459 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
66733411 ATAGTAAAAG
66733421 TATAATTTCATCATTT
1 TATAATTTCATCATTT
66733437 TAATAATTT-AT-ATTT
1 T-ATAATTTCATCATTT
66733452 TATAATTT
1 TATAATTT
66733460 TTAAAGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.32
15 5 0.23
16 3 0.14
17 7 0.32
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (16 bp):
TATAATTTCATCATTT
Found at i:66735862 original size:21 final size:22
Alignment explanation
Indices: 66735833--66735874 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
66735823 AATCTATTTA
66735833 ATTAGATATTGTTTTACAAGAC
1 ATTAGATATTGTTTTACAAGAC
* *
66735855 ATTA-ATATTTTTTTATAAGA
1 ATTAGATATTGTTTTACAAGA
66735875 ATTGTAGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTAGATATTGTTTTACAAGAC
Found at i:66736194 original size:6 final size:6
Alignment explanation
Indices: 66736183--66736216 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
66736173 TTCATGGCTG
* *
66736183 CTTCTT CTTCTT CTTCCT CTTCCT CTTCCT CTTC
1 CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTC
66736217 TCCTCAAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (6 bp):
CTTCCT
Found at i:66739909 original size:189 final size:186
Alignment explanation
Indices: 66739563--66740083 Score: 607
Period size: 189 Copynumber: 2.7 Consensus size: 186
66739553 TTCAAAGTTG
* * * *
66739563 GAATCACTTCATGATCTGGATCTTAGTCATTGCCCAATAGCTGAATTCCCAATAATCCCAAGAAG
1 GAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATAGC-AAATTCCCAA-AATCCCAAGAAG
* * * * * * *
66739628 CTTGACAGAATTTAACTTATCTGAAACTCAAATTGAAGATGTGTGCTTGTCTCTCGACACTCCAA
64 CTTAACAAAATTAAACTTATCTG-AACTCAAATTGAAGAAGTGTCCTTGTCTCTCGACTCTCTAA
* *
66739693 GTAATCTTCAGACGTTAGATATGAGTGGCTCAAGGGTAAAAAATGTATCCATCAAGATA
128 GTAATCTTCAAACATTAGATATGAGTGGCTCAAGGGTAAAAAATGTATCCATCAAGATA
* *
66739752 GAATCCCTTCGTGACCTGAATCTTAATCATTGCCCAATAGTCAAATTTCCCAAAATCCCAAGAA-
1 GAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATAG-CAAA-TTCCCAAAATCCCAAGAAG
* *
66739816 CTTTAATAAAATTAAACTTATCTAGAACTCAAATTGAAGAGGTGTCCTTGTCTCTCGACTCTCTA
64 C-TTAACAAAATTAAACTTATCT-GAACTCAAATTGAAGAAGTGTCCTTGTCTCTCGACTCTCTA
* * *
66739881 GGTAATCTTCAAACATTAGATATGAGTGGCTCAAGGGTAAAAAATGTATCGATCAAGATG
127 AGTAATCTTCAAACATTAGATATGAGTGGCTCAAGGGTAAAAAATGTATCCATCAAGATA
*
66739941 GAAGCCGCCCTTCGTGATCTGAATCTTAGTCATTGCCCAAT-GACAGAATTCCCAGAAATCCCAA
1 GAA---TCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATAG-CA-AATTCCCA-AAATCCCAA
* * * * * * * * *
66740005 GAAGCTTAAGAAAATTGAATTTATTTGGGACTCAAATT-AAGGAAGTGACTTTGTCTTTAGACTC
60 GAAGCTTAACAAAATTAAACTTATCT-GAACTCAAATTGAA-GAAGTGTCCTTGTCTCTCGACTC
*
66740069 TCTAAATAATCTTCA
123 TCTAAGTAATCTTCA
66740084 GATGTTAAAG
Statistics
Matches: 285, Mismatches: 36, Indels: 19
0.84 0.11 0.06
Matches are distributed among these distances:
188 1 0.00
189 159 0.56
190 9 0.03
191 11 0.04
192 104 0.36
193 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (186 bp):
GAATCCCTTCGTGATCTGAATCTTAGTCATTGCCCAATAGCAAATTCCCAAAATCCCAAGAAGCT
TAACAAAATTAAACTTATCTGAACTCAAATTGAAGAAGTGTCCTTGTCTCTCGACTCTCTAAGTA
ATCTTCAAACATTAGATATGAGTGGCTCAAGGGTAAAAAATGTATCCATCAAGATA
Found at i:66754006 original size:174 final size:174
Alignment explanation
Indices: 66753685--66754006 Score: 414
Period size: 174 Copynumber: 1.9 Consensus size: 174
66753675 TTTTACCCTT
* * *
66753685 GAGCCACTCATAACTAAAGTCTAAAGATCACTTGAAGGGTCGAGAGATAGACACACGTTTTCAAT
1 GAGCCACTCATAACTAAAGTCTAAAGATCACTTGAAGAGTCGAGAGATAGACACACCTCTTCAAT
** * * * * *
66753750 TTGAGTTTCAGATAAGTTTAATCTTTTTAAGCTTTCTAGGATTTTTAGAAATTCGACTATTGGGC
66 TTGAGTCCCAGATAAGTTCAATATTATTAAGCTTTCTAGGATTTCTAGAAATTCGACAATTGGGC
*
66753815 AAGCACTTAGATTCAGATCACAAGGGGAATATTTTTTTACTATC
131 AAGCACTAAGATTCAGATCACAAGGGGAATATTTTTTTACTATC
* * * * *
66753859 GAGCCACTCATATCTAAAGTCTGAAGATTACTTGGAGAGTCGAGAGATAGGCACACCTCTTCAAT
1 GAGCCACTCATAACTAAAGTCTAAAGATCACTTGAAGAGTCGAGAGATAGACACACCTCTTCAAT
* * * *
66753924 TTGAGTCCCGGATAAGTTCAATATTATTAAGC-TTCTTGGGATTTCTGGAAATTTGACAATTGGG
66 TTGAGTCCCAGATAAGTTCAATATTATTAAGCTTTC-TAGGATTTCTAGAAATTCGACAATTGGG
* *
66753988 TAATCACTAA-AGTTCAGAT
130 CAAGCACTAAGA-TTCAGAT
66754007 TACGAAAAGA
Statistics
Matches: 124, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
173 4 0.03
174 120 0.97
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (174 bp):
GAGCCACTCATAACTAAAGTCTAAAGATCACTTGAAGAGTCGAGAGATAGACACACCTCTTCAAT
TTGAGTCCCAGATAAGTTCAATATTATTAAGCTTTCTAGGATTTCTAGAAATTCGACAATTGGGC
AAGCACTAAGATTCAGATCACAAGGGGAATATTTTTTTACTATC
Found at i:66759112 original size:21 final size:22
Alignment explanation
Indices: 66759086--66759132 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
66759076 CTCTGCTCAA
*
66759086 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
66759107 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
66759129 ACTC
1 ACTC
66759133 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:66764611 original size:30 final size:30
Alignment explanation
Indices: 66764550--66764624 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
66764540 CAACCATGCT
* * *
66764550 ATGGCGAGCACACAT-GGCAAATAGCGTAA
1 ATGGCGAACACACATGGGCAAACAGCGCAA
66764579 ATGGCGAACACACATGGGCAAACAGTC-CAA
1 ATGGCGAACACACATGGGCAAACAG-CGCAA
*
66764609 ATGGCGAACACTCATG
1 ATGGCGAACACACATG
66764625 ACGGATAGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 14 0.35
30 25 0.62
31 1 0.03
ACGTcount: A:0.37, C:0.24, G:0.25, T:0.13
Consensus pattern (30 bp):
ATGGCGAACACACATGGGCAAACAGCGCAA
Found at i:66775899 original size:264 final size:266
Alignment explanation
Indices: 66775428--66775957 Score: 1001
Period size: 264 Copynumber: 2.0 Consensus size: 266
66775418 CGTGATAAGA
*
66775428 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCTCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
*
66775493 AAGGATTATTCGAGAGCTGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
66775558 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
*
66775623 CGTGAGACTTATCTTAACGCTCGAATGAAGAAAATGATCGAATGTCTCCGCATATGA-GGCAAAG
196 CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
66775687 CCGTAT
261 CCGTAT
*
66775693 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCTGTGGCCCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
*
66775758 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAGAA-AAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
66775822 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
66775887 CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
196 CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
66775952 CCGTAT
261 CCGTAT
66775958 ATGAATCCGC
Statistics
Matches: 259, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
264 148 0.57
265 111 0.43
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (266 bp):
GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
CCGTAT
Found at i:66776151 original size:61 final size:61
Alignment explanation
Indices: 66776080--66776261 Score: 285
Period size: 61 Copynumber: 3.0 Consensus size: 61
66776070 CACGTATCTC
*
66776080 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAATACGCG
1 TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAATACGCG
* * *
66776141 TTCATGCATTAACATTACATTT-ATTACATACAATAAATTTCTTAAAATCTAAAAATACGCG
1 TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATC-CAAAATACGCG
* *
66776202 TTCATACATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAA-TACG
66776262 TCGAGTTTAG
Statistics
Matches: 110, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
60 26 0.24
61 55 0.50
62 29 0.26
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.34
Consensus pattern (61 bp):
TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAATACGCG
Found at i:66803095 original size:266 final size:266
Alignment explanation
Indices: 66802621--66803152 Score: 1012
Period size: 266 Copynumber: 2.0 Consensus size: 266
66802611 CGTGATAAGA
*
66802621 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCTCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
*
66802686 AAGGATTATTCGAGAGCTGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
66802751 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
131 GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
*
66802816 CGTGAGACTTATCTTAACGCTCGAATGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
196 CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
66802881 CCGTAT
261 CCGTAT
*
66802887 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCTGTGGCCCGAGAATTTAATGTGAC
1 GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
66802952 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAGAA-AAGCCAACGAGCACCATGAGGTTTAG
66 AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAA-AAGAAGCCAACGAGCACCATGAGGTTTAG
66803016 TGAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGT
130 TGAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGT
66803081 TCGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAA
195 TCGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAA
66803146 GCCGTAT
260 GCCGTAT
66803153 ATGAATCCGC
Statistics
Matches: 261, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
266 259 0.99
267 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (266 bp):
GAAGGATGATAGTTTAATGGAGGACCACACAACCATTGCTCCGTGGCCCGAGAATTTAATGTGAC
AAGGATTATTCGAGAGCCGCTGAACTTTCTTAAAAAAGAAGCCAACGAGCACCATGAGGTTTAGT
GAGCAACGAGTCACGGCCCGGATTGAGTAAAAAGGAGATATAAGATACGTCCCTTTTGAAGAGTT
CGTGAGACTTATCTTAACGCTCGAACGAAGAAAATGATCGAATGTCTCCGCATATGAGGGCAAAG
CCGTAT
Found at i:66803341 original size:62 final size:62
Alignment explanation
Indices: 66803275--66803458 Score: 296
Period size: 62 Copynumber: 3.0 Consensus size: 62
66803265 CACGTATCTC
*
66803275 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * * *
66803337 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCTTAAAATCTAAAAATACGCG
1 TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
66803399 TTCATACATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
66803459 TCGAGTTTAG
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.34
Consensus pattern (62 bp):
TTCATACATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:66804765 original size:12 final size:11
Alignment explanation
Indices: 66804709--66804767 Score: 55
Period size: 12 Copynumber: 5.1 Consensus size: 11
66804699 CAGTAGAGGC
66804709 CAAAAAAAAGAA
1 CAAAAAAAA-AA
* *
66804721 CAAATAAAAAC
1 CAAAAAAAAAA
*
66804732 CAAATAAAAAA
1 CAAAAAAAAAA
*
66804743 CAAAAGCAAAAA
1 CAAAA-AAAAAA
66804755 CAAGAAAAAAAA
1 CAA-AAAAAAAA
66804767 C
1 C
66804768 TCTACCAGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 15 0.38
12 22 0.56
13 2 0.05
ACGTcount: A:0.78, C:0.14, G:0.05, T:0.03
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:66806361 original size:132 final size:132
Alignment explanation
Indices: 66806124--66807313 Score: 1994
Period size: 132 Copynumber: 9.0 Consensus size: 132
66806114 AGGCGTAAAT
*
66806124 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGAGGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
*
66806189 TGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA-AGT
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA-T
66806253 AGC
130 AGC
*
66806256 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTTCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
*
66806321 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGATA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66806386 GC
131 GC
* * * **
66806388 AAGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATATAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
66806453 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA-AGT
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA-T
66806517 AGC
130 AGC
66806520 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
66806585 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66806650 GC
131 GC
* * **
66806652 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATATAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
66806717 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA-AGT
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA-T
66806781 AGC
130 AGC
66806784 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
66806849 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66806914 GC
131 GC
* * ** *
66806916 AGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATATAGATCTTGTTTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
* *
66806981 AGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66807046 GC
131 GC
* * *
66807048 AGATCCTATCTTCTTATATTGGTAGGAAGTGGATCGAAGAGGCAGATCTTGTCTTCCCATATTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
*
66807113 TGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66807178 GC
131 GC
* * * * *
66807180 AGGTCCTATCTTTCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGG
1 AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
* * * *
66807245 TGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC--CCTGTATTTGGCAGTGGAGTAGATTGAAGA
66 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGA
*
66807308 TTGC
129 TAGC
66807312 AG
1 AG
66807314 ATCTTATCAC
Statistics
Matches: 995, Mismatches: 56, Indels: 14
0.93 0.05 0.01
Matches are distributed among these distances:
130 5 0.01
131 7 0.01
132 980 0.98
133 3 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
AGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGG
TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
GC
Found at i:66807496 original size:40 final size:40
Alignment explanation
Indices: 66807445--66807760 Score: 325
Period size: 40 Copynumber: 7.8 Consensus size: 40
66807435 AGATTACAGA
* *
66807445 TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGCATCAAG
1 TCTTATCTCCCTAAGCAATAGCGGAGCAGATCGCATCAAG
* * ** *
66807485 TCTTATCTCCCTAAGCAGTAGCGGAGCGGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGCGGAGCAGATC-GCATCA-AG
* *
66807526 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATTAAG
1 -TCTTATCTCCCTAAGCAATAGCGGAGCAGATCGCATCAAG
* * ** *
66807567 TCTTATCTCCCTAAGCAGTAGCGGAGCGGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGCGGAGCAGATC-GCATCA-AG
*
66807608 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAATAGCGGAGCAGATCGCATCAAG
* * * *
66807649 TCTTATCTCCCTAAGCAGTAGCGGAGTAGA-CAAAACCA-CAAA
1 TCTTATCTCCCTAAGCAATAGCGGAGCAGATC----GCATCAAG
*
66807691 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
1 TCTTATCTCCCTAAGCAATAGCGGAGCAGATCGCATCAAG
*
66807731 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA
1 TCTTATCTCCCTAAGCAATAGCGGAGCAGA
66807761 CGAAAGAAAC
Statistics
Matches: 225, Mismatches: 37, Indels: 28
0.78 0.13 0.10
Matches are distributed among these distances:
39 5 0.02
40 118 0.52
41 8 0.04
42 89 0.40
43 5 0.02
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAATAGCGGAGCAGATCGCATCAAG
Found at i:66807535 original size:82 final size:82
Alignment explanation
Indices: 66807440--66807757 Score: 591
Period size: 82 Copynumber: 3.9 Consensus size: 82
66807430 ATCGAAGATT
*
66807440 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCGGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
66807505 GCGGAGCGGACAAAACC
66 GCGGAGCGGACAAAACC
*
66807522 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATTAAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
66807587 GCGGAGCGGACAAAACC
66 GCGGAGCGGACAAAACC
66807604 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
**
66807669 GCGGAGTAGACAAAACC
66 GCGGAGCGGACAAAACC
*
66807686 ACAAATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
66807751 GCGGAGC
66 GCGGAGC
66807758 AGACGAAAGA
Statistics
Matches: 229, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 229 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (82 bp):
ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
GCGGAGCGGACAAAACC
Found at i:66812626 original size:21 final size:22
Alignment explanation
Indices: 66812602--66812645 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
66812592 TTATTTCGAA
66812602 TATATAACATAGGTTTA-GACT
1 TATATAACATAGGTTTACGACT
*
66812623 TATATAGCATAGGTTTACGACT
1 TATATAACATAGGTTTACGACT
66812645 T
1 T
66812646 TCATAAGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (22 bp):
TATATAACATAGGTTTACGACT
Found at i:66818530 original size:17 final size:17
Alignment explanation
Indices: 66818496--66818533 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
66818486 CTAGATGTGA
*
66818496 TTTTTTTTTAAAGGTAT
1 TTTTTTTTTAAAGATAT
66818513 TTTTATTTTTAAA-ATAT
1 TTTT-TTTTTAAAGATAT
66818530 TTTT
1 TTTT
66818534 CGACATGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTTTTTTAAAGATAT
Found at i:66821854 original size:33 final size:32
Alignment explanation
Indices: 66821782--66821874 Score: 100
Period size: 31 Copynumber: 2.9 Consensus size: 32
66821772 ACAAGCTCTA
*
66821782 TCTGTGTTTATTGTCGC-GATGGACTATCTATT
1 TCTGTGTTTATTGTCCCAG-TGGACTATCTATT
* * *
66821814 T-TGTGTTTACTGTCCCAGTGAACTATCTTTGT
1 TCTGTGTTTATTGTCCCAGTGGACTATCTAT-T
* *
66821846 TCTGTGTTTATTGTCTCAGCGGACTATCT
1 TCTGTGTTTATTGTCCCAGTGGACTATCT
66821875 CTGTGGATGC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
31 23 0.46
32 4 0.08
33 23 0.46
ACGTcount: A:0.15, C:0.18, G:0.20, T:0.46
Consensus pattern (32 bp):
TCTGTGTTTATTGTCCCAGTGGACTATCTATT
Found at i:66834628 original size:20 final size:21
Alignment explanation
Indices: 66834605--66834651 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
66834595 AAATATATAA
66834605 ATTTTGAAATTTTT-ATAAA-T
1 ATTTTGAAATTTTTGA-AAATT
66834625 ATTTTG-AATTTTTGAAAATT
1 ATTTTGAAATTTTTGAAAATT
66834645 ATTTTGA
1 ATTTTGA
66834652 TTTCTTGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (21 bp):
ATTTTGAAATTTTTGAAAATT
Found at i:66838137 original size:16 final size:16
Alignment explanation
Indices: 66838116--66838158 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
66838106 CAAATTTAAG
66838116 TCATTT-TAAGTTCAAA
1 TCATTTCTAA-TTCAAA
66838132 TCATTTCTAATTCAAA
1 TCATTTCTAATTCAAA
*
66838148 TCATCTCTAAT
1 TCATTTCTAAT
66838159 ATGACCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (16 bp):
TCATTTCTAATTCAAA
Found at i:66847602 original size:2 final size:2
Alignment explanation
Indices: 66847595--66847621 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
66847585 TTTATTTAAA
66847595 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
66847622 CTTCTGTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66859990 original size:6 final size:6
Alignment explanation
Indices: 66859979--66860010 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
66859969 ACCCTATACC
66859979 CCTAAA CCTAAA CCTAAA CCTAAA CCTAAA CC
1 CCTAAA CCTAAA CCTAAA CCTAAA CCTAAA CC
66860011 CTATAAGCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTAAA
Found at i:66879555 original size:17 final size:17
Alignment explanation
Indices: 66879519--66879551 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
66879509 AAGAATTTTT
66879519 TAAGTAAAAATATAATA
1 TAAGTAAAAATATAATA
66879536 TAAGT-AAAATATAATA
1 TAAGTAAAAATATAATA
66879552 ATAATTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (17 bp):
TAAGTAAAAATATAATA
Found at i:66886763 original size:18 final size:19
Alignment explanation
Indices: 66886740--66886797 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
66886730 TCATAATTAG
* *
66886740 TTTAATTTTTTATTTCAA-
1 TTTAATTTTTTAATTAAAT
*
66886758 TTTAATATTTTAATTAAAT
1 TTTAATTTTTTAATTAAAT
*
66886777 TTTAATTTAATTAA-TAAAT
1 TTTAATTT-TTTAATTAAAT
66886796 TT
1 TT
66886798 ACTGATTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
18 15 0.45
19 14 0.42
20 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTAATTTTTTAATTAAAT
Found at i:66893160 original size:22 final size:22
Alignment explanation
Indices: 66893135--66893176 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
66893125 GATTGATACT
*
66893135 ATTAGAATACCTTAAATATTTA
1 ATTAAAATACCTTAAATATTTA
**
66893157 ATTAAAATATTTTAAATATT
1 ATTAAAATACCTTAAATATT
66893177 GACATCAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTAAAATACCTTAAATATTTA
Found at i:66896228 original size:6 final size:6
Alignment explanation
Indices: 66896217--66896242 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
66896207 CAGTTGAAAT
66896217 AAAAGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AA
66896243 CAACAATCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:66899072 original size:11 final size:11
Alignment explanation
Indices: 66899056--66899091 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
66899046 ATTTCTCAAA
66899056 TTTAATTAATT
1 TTTAATTAATT
66899067 TTTAATTAA-T
1 TTTAATTAATT
66899077 TTTAATTTAATT
1 TTTAA-TTAATT
66899089 TTT
1 TTT
66899092 GAAATGAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.26
11 13 0.57
12 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTAATTAATT
Found at i:66914576 original size:19 final size:19
Alignment explanation
Indices: 66914535--66914577 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
66914525 ATTGAACCGA
*
66914535 ATTTA-AAATATTTTAATT
1 ATTTATAAATATTTTAATG
* *
66914553 TTTTATAAATGTTTTAATG
1 ATTTATAAATATTTTAATG
66914572 ATTTAT
1 ATTTAT
66914578 CTAATCAAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
ATTTATAAATATTTTAATG
Found at i:66922084 original size:104 final size:105
Alignment explanation
Indices: 66921894--66922098 Score: 342
Period size: 104 Copynumber: 2.0 Consensus size: 105
66921884 AAAATTTTTC
66921894 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
* * *
66921959 TTCTTGTTCGACCAAATAGCCAAATATCCTTTTAAACTCT
66 TTCTCGTTCGACCAAACAGCCAAATATCCTCTTAAACTCT
*
66921999 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAG-GAACGTGCCCTAACGTGCTGGGTTTCGAT
1 TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
*
66922063 TTCTCG-TCTGACTAAACAGCCAAATATCCTCTTAAA
66 TTCTCGTTC-GACCAAACAGCCAAATATCCTCTTAAA
66922099 GCTTCAAAGT
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
103 2 0.02
104 57 0.61
105 35 0.37
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (105 bp):
TAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGAT
TTCTCGTTCGACCAAACAGCCAAATATCCTCTTAAACTCT
Found at i:66926334 original size:106 final size:106
Alignment explanation
Indices: 66926164--66926364 Score: 357
Period size: 106 Copynumber: 1.9 Consensus size: 106
66926154 AAGCTTTAAG
*
66926164 AGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
66926229 TTTTCCAAACGCGAAATATCGCCTTATTTAAAAGTTTAAAA
66 TTTTCCAAACGCGAAATATCGCCTTATTTAAAAGTTTAAAA
* *
66926270 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* *
66926335 TTTTTCAAACGCGAAATATTGCCTTATTTA
66 TTTTCCAAACGCGAAATATCGCCTTATTTA
66926365 GAAAAATTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 90 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (106 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
TTTTCCAAACGCGAAATATCGCCTTATTTAAAAGTTTAAAA
Found at i:66928532 original size:21 final size:23
Alignment explanation
Indices: 66928493--66928549 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
66928483 GTTTTAAAAT
* *
66928493 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
66928515 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
66928538 TTGGGCTAGGTT
1 TTGGGCTAGGTT
66928550 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:66939111 original size:44 final size:44
Alignment explanation
Indices: 66939048--66939486 Score: 468
Period size: 44 Copynumber: 10.1 Consensus size: 44
66939038 AATATAGGAC
* * *
66939048 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGAT
* * * *
66939092 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGAT
* * *
66939137 CTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGAT
1 CTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGAT
* * *
66939180 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGAT
* * *
66939224 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGAT
* * *
66939269 CTG--ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGAT
1 CTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGAT
* * *
66939311 CTGCTA-CTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGAT
* *
66939354 CTGCTTTCTTCGATCTACTTCGCCACCAATAT-GGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGAT
* * * *
66939398 CTG--ATCTTCGATCCACTTC-TACCAATATAGGAAGATAGGAT
1 CTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGAT
* * * *
66939439 CTGATAT-TTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGAT
66939482 CTGCT
1 CTGCT
66939487 TTTGACTCAA
Statistics
Matches: 326, Mismatches: 54, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
40 8 0.02
41 14 0.04
42 48 0.15
43 92 0.28
44 113 0.35
45 51 0.16
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
CTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGAT
Found at i:66939357 original size:174 final size:174
Alignment explanation
Indices: 66939048--66939485 Score: 462
Period size: 174 Copynumber: 2.5 Consensus size: 174
66939038 AATATAGGAC
* * * * * *
66939048 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTG--ATCTTCGATCTACTTC
* * * *
66939113 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
64 GCCACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACAAG
*
66939178 ATCTGCTATCTTCGATCTACTTC-ACGCCAATACAT-GAAGACAAGAT
129 ATCTGCTATCTTCGATCTACTTCGACACCAAT--ATGGAAGACAAGAT
* * *
66939224 CTGCTCTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGATCTTCGATCCACTTC-
1 CTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGATCTTCGATCTACTTCG
* * * * * *
66939288 CTACCAATATAGGAAGATAGGATCTGC-TACTTCGATCTACTTCAC-GCCAATACATGAAGACAA
65 CCACCAATATAGGAAGACAAGATCTGCAT-CTTCGATCCACTTC-CTACCAATACAGGAAGACAA
* *
66939351 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGAAGACAAGAT
128 GATCTGCTATCTTCGATCTACTTCGACACCAATATGGAAGACAAGAT
* * * * *
66939398 CTG--ATCTTCGATCCACTT-CTACCAATATAGGAAGATAGGATCTGATATTTCGATCTACTTC-
1 CTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGAT-CTTCGATCTACTTCG
* * * *
66939459 ACGCCAATACATGAAGACAAGATCTGC
65 CCACCAATATAGGAAGACAAGATCTGC
66939486 TTTTGACTCA
Statistics
Matches: 219, Mismatches: 37, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
170 24 0.11
171 32 0.15
172 13 0.06
173 3 0.01
174 86 0.39
175 20 0.09
176 20 0.09
177 21 0.10
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (174 bp):
CTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGATCTTCGATCTACTTCGC
CACCAATATAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAGGAAGACAAGAT
CTGCTATCTTCGATCTACTTCGACACCAATATGGAAGACAAGAT
Found at i:66950958 original size:106 final size:105
Alignment explanation
Indices: 66950788--66950987 Score: 355
Period size: 106 Copynumber: 1.9 Consensus size: 105
66950778 AAGCTTTAAG
*
66950788 AGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
66950853 TTTTCCAAACGCGAAATATCGCCTTATTTAAAAGTTTAAAA
66 TTTT-CAAACGCGAAATATCGCCTTATTTAAAAGTTTAAAA
* *
66950894 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
*
66950959 TTTTCAAACGCGAAATATTGCCTTATTTA
66 TTTTCAAACGCGAAATATCGCCTTATTTA
66950988 GAAAAATTTT
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
105 24 0.27
106 66 0.73
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (105 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
TTTTCAAACGCGAAATATCGCCTTATTTAAAAGTTTAAAA
Found at i:66953143 original size:21 final size:23
Alignment explanation
Indices: 66953104--66953160 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
66953094 GTTTTAAAAT
* *
66953104 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
66953126 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
66953149 TTGGGCTAGGTT
1 TTGGGCTAGGTT
66953161 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:66954809 original size:16 final size:17
Alignment explanation
Indices: 66954788--66954821 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
66954778 GTGTAATTTT
*
66954788 ATTTTTATTAA-TTTAA
1 ATTTTTATAAACTTTAA
66954804 ATTTTTATAAACTTTAA
1 ATTTTTATAAACTTTAA
66954821 A
1 A
66954822 GGAGTCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTTATAAACTTTAA
Found at i:66958396 original size:31 final size:31
Alignment explanation
Indices: 66958360--66958425 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
66958350 TTATAAAATG
66958360 GTCATTAAATTATTAGAAAGT-TTTCATTTAA
1 GTCATTAAATTATTAGAAAGTATTT-ATTTAA
* *
66958391 GTCATTGAATTATTCGAAAGTATTTATTTAA
1 GTCATTAAATTATTAGAAAGTATTTATTTAA
66958422 GTCA
1 GTCA
66958426 ATGGGCTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 29 0.91
32 3 0.09
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (31 bp):
GTCATTAAATTATTAGAAAGTATTTATTTAA
Found at i:66967588 original size:15 final size:15
Alignment explanation
Indices: 66967568--66967603 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
66967558 TTTTAAAAAA
*
66967568 ATTATAAAATGTAAT
1 ATTATAAAATGAAAT
66967583 ATTATAAAATGAAAT
1 ATTATAAAATGAAAT
*
66967598 AATATA
1 ATTATA
66967604 TTAATAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (15 bp):
ATTATAAAATGAAAT
Found at i:66967838 original size:24 final size:26
Alignment explanation
Indices: 66967811--66967859 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
66967801 TTTGCGAGGA
*
66967811 AAAT-GCAACTAAAA-AATTAAAAAT
1 AAATAGCAACAAAAATAATTAAAAAT
66967835 AAATGAGCAACAAAAATAATTAAAA
1 AAAT-AGCAACAAAAATAATTAAAA
66967860 TTTCAATAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
26 9 0.43
27 8 0.38
ACGTcount: A:0.67, C:0.08, G:0.06, T:0.18
Consensus pattern (26 bp):
AAATAGCAACAAAAATAATTAAAAAT
Found at i:66968490 original size:24 final size:21
Alignment explanation
Indices: 66968429--66968477 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
66968419 AGTTAGACAA
*
66968429 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
*
66968450 AAAAAGAGAAGTAACTTGGAT
1 AAAAAGAGAAGTAACTTGGAC
66968471 AAAAAGA
1 AAAAAGA
66968478 AACGAAGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.57, C:0.08, G:0.22, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:66972970 original size:73 final size:73
Alignment explanation
Indices: 66972888--66973073 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
66972878 ACAACTTGAC
66972888 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
66972953 CACTAACA
66 CACTAACA
*
66972961 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
66973026 CACTAACA
66 CACTAACA
*
66973034 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
66973074 AATAATAATA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:66977401 original size:73 final size:73
Alignment explanation
Indices: 66977319--66977504 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
66977309 ACAACTTGAC
66977319 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
66977384 CACTAACA
66 CACTAACA
*
66977392 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
66977457 CACTAACA
66 CACTAACA
*
66977465 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
66977505 AATAATAATA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:66978915 original size:21 final size:21
Alignment explanation
Indices: 66978886--66978925 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
66978876 CACATTTTGA
*
66978886 TTGTTTTGTTCCTATGTAACC
1 TTGTCTTGTTCCTATGTAACC
*
66978907 TTGTCTTGTTCCTTTGTAA
1 TTGTCTTGTTCCTATGTAA
66978926 TTTGATAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.55
Consensus pattern (21 bp):
TTGTCTTGTTCCTATGTAACC
Found at i:66983808 original size:13 final size:13
Alignment explanation
Indices: 66983792--66983822 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
66983782 TAGAAGAAAC
66983792 AAACAGAATTCAA
1 AAACAGAATTCAA
*
66983805 AAACAGAATTGAA
1 AAACAGAATTCAA
66983818 AAACA
1 AAACA
66983823 AAAGCAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.13, G:0.10, T:0.13
Consensus pattern (13 bp):
AAACAGAATTCAA
Found at i:66984125 original size:112 final size:112
Alignment explanation
Indices: 66983918--66984146 Score: 431
Period size: 112 Copynumber: 2.0 Consensus size: 112
66983908 AATCCATAAA
* *
66983918 AACAAGCATTCAGCTTGTCAAAATCAGTATATGGTCACCTAATCAATACCTACTACCACTAATAC
1 AACAGGCATCCAGCTTGTCAAAATCAGTATATGGTCACCTAATCAATACCTACTACCACTAATAC
66983983 ATTGAAACTTGGTAAACCAAGCTTGTACACATAAACAAAGCTGAGTT
66 ATTGAAACTTGGTAAACCAAGCTTGTACACATAAACAAAGCTGAGTT
*
66984030 AACAGGCATCCAGCTTGTCAAAATCAGTATATGGTCACCTAATCAATACCTACTACCACTAATGC
1 AACAGGCATCCAGCTTGTCAAAATCAGTATATGGTCACCTAATCAATACCTACTACCACTAATAC
66984095 ATTGAAACTTGGTAAACCAAGCTTGTACACATAAACAAAGCTGAGTT
66 ATTGAAACTTGGTAAACCAAGCTTGTACACATAAACAAAGCTGAGTT
66984142 AACAG
1 AACAG
66984147 TTCAATCACC
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 114 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.25
Consensus pattern (112 bp):
AACAGGCATCCAGCTTGTCAAAATCAGTATATGGTCACCTAATCAATACCTACTACCACTAATAC
ATTGAAACTTGGTAAACCAAGCTTGTACACATAAACAAAGCTGAGTT
Found at i:66984962 original size:33 final size:33
Alignment explanation
Indices: 66984924--66984991 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
66984914 AAAGCATTAA
66984924 TACAAAATACGCTGAGAAATTATGGTGGAAAGC
1 TACAAAATACGCTGAGAAATTATGGTGGAAAGC
66984957 TACAAAATACGCTGAGAAATTATGGTGGAAAGC
1 TACAAAATACGCTGAGAAATTATGGTGGAAAGC
66984990 TA
1 TA
66984992 TAAATATTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.22
Consensus pattern (33 bp):
TACAAAATACGCTGAGAAATTATGGTGGAAAGC
Found at i:66989644 original size:21 final size:22
Alignment explanation
Indices: 66989603--66989650 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
66989593 GTTTTTTACT
66989603 AAAATAACACAAAAGAAATAAA
1 AAAATAACACAAAAGAAATAAA
*
66989625 AAAAT-AC-CAAAATAATATAAA
1 AAAATAACACAAAAGAA-ATAAA
66989646 AAAAT
1 AAAAT
66989651 TATTTACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 12 0.50
22 5 0.21
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (22 bp):
AAAATAACACAAAAGAAATAAA
Found at i:66989726 original size:27 final size:27
Alignment explanation
Indices: 66989688--66989764 Score: 136
Period size: 27 Copynumber: 2.9 Consensus size: 27
66989678 AAGGGCTGAA
66989688 GGTGCCAATGAGAATGGCAGCACCGGC
1 GGTGCCAATGAGAATGGCAGCACCGGC
*
66989715 GGTGCCAATGAGAATGGCAGCACCGGT
1 GGTGCCAATGAGAATGGCAGCACCGGC
*
66989742 GGTGCCAATGAGAATGACAGCAC
1 GGTGCCAATGAGAATGGCAGCAC
66989765 AGGACTAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.29, C:0.23, G:0.35, T:0.13
Consensus pattern (27 bp):
GGTGCCAATGAGAATGGCAGCACCGGC
Found at i:66991078 original size:11 final size:11
Alignment explanation
Indices: 66991062--66991096 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
66991052 TCCTTCCCCC
66991062 CTCCCTTCTCT
1 CTCCCTTCTCT
66991073 CTCCCTTCTCT
1 CTCCCTTCTCT
66991084 CTTCCC-TCTCT
1 C-TCCCTTCTCT
66991095 CT
1 CT
66991097 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:66991587 original size:3 final size:3
Alignment explanation
Indices: 66991563--66991630 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
66991553 AATATCCTTG
* * * *
66991563 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA GTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
66991611 TTA GTA TATA TTT TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
66991631 GTACGTGTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:66991640 original size:23 final size:23
Alignment explanation
Indices: 66991570--66991641 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
66991560 TTGTTATTTT
* *
66991570 TATATTATTAGTAT-TATTAGTA
1 TATATTATTATTATGTAGTAGTA
*
66991592 TTAGTATTATTATTATGTATTAGTA
1 -TA-TATTATTATTATGTAGTAGTA
*
66991617 TATATTTTTATTATGTACGT-GTA
1 TATATTATTATTATGTA-GTAGTA
66991640 TA
1 TA
66991642 CATATATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
23 21 0.49
24 14 0.33
25 8 0.19
ACGTcount: A:0.32, C:0.01, G:0.11, T:0.56
Consensus pattern (23 bp):
TATATTATTATTATGTAGTAGTA
Found at i:66991748 original size:3 final size:3
Alignment explanation
Indices: 66991735--66991773 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
66991725 TATTCCAATG
* *
66991735 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
66991774 GTTTATGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:66992057 original size:64 final size:64
Alignment explanation
Indices: 66991978--66992109 Score: 164
Period size: 64 Copynumber: 2.1 Consensus size: 64
66991968 GTCGTATTAT
*
66991978 TATATTTTAATATTA-TA-TTATATAATTATA-TA-TACATATATCTTTTATATATATTATCATT
1 TATATTTTAATATTATTAGTTATAT-ATTACACTATTACATATAT-TTTTATA-ATATTAT-ATT
66992039 GTA
62 GTA
* * *
66992042 TATATTTTAATATTATTAGTTATATTTTACACTATTATATATATTTTTCTAATATTATATTGTA
1 TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
66992106 TATA
1 TATA
66992110 CTGTTGTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
64 25 0.42
65 13 0.22
66 14 0.23
67 8 0.13
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (64 bp):
TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
Found at i:66992084 original size:19 final size:18
Alignment explanation
Indices: 66992040--66992099 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 18
66992030 ATTATCATTG
66992040 TATATATTTTAATATTAT
1 TATATATTTTAATATTAT
66992058 TAGTTATATTTTACACTATTAT
1 TA--TATATTTTA-A-TATTAT
*
66992080 ATATATTTTTCTAATATTAT
1 -TATATATTT-TAATATTAT
66992100 ATTGTATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.06
20 15 0.43
21 8 0.23
22 8 0.23
23 2 0.06
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATATATTTTAATATTAT
Found at i:66992542 original size:38 final size:37
Alignment explanation
Indices: 66992458--66992552 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
66992448 TATACGTACT
*
66992458 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
66992496 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
66992532 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
66992553 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:66994852 original size:21 final size:22
Alignment explanation
Indices: 66994826--66994873 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
66994816 TTGGTAAATA
66994826 ATTTTTTTATATTATTTTG-G-T
1 ATTTTTTTAT-TTATTTTGTGTT
*
66994847 ATTTTTTTATTTCTTTTGTGTT
1 ATTTTTTTATTTATTTTGTGTT
66994869 ATTTT
1 ATTTT
66994874 AGTGAAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 11 0.46
22 6 0.25
ACGTcount: A:0.15, C:0.02, G:0.08, T:0.75
Consensus pattern (22 bp):
ATTTTTTTATTTATTTTGTGTT
Found at i:66997466 original size:22 final size:22
Alignment explanation
Indices: 66997438--66997482 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
66997428 ATTGTGAAGA
66997438 ACCAATCATTCATTGTGACCTC
1 ACCAATCATTCATTGTGACCTC
66997460 ACCAATCATTCATTGTGACCTC
1 ACCAATCATTCATTGTGACCTC
66997482 A
1 A
66997483 AACCAAGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (22 bp):
ACCAATCATTCATTGTGACCTC
Found at i:67007987 original size:20 final size:20
Alignment explanation
Indices: 67007942--67008001 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
67007932 GCATACTTAT
*
67007942 ATATTTTT-TATAT-TATTC
1 ATATTTTTATATATATATAC
*
67007960 ATA-ATTTATATATATATAC
1 ATATTTTTATATATATATAC
* *
67007979 ATATTTTTATTTATATGTAC
1 ATATTTTTATATATATATAC
67007999 ATA
1 ATA
67008002 CTTATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
17 3 0.09
18 8 0.24
19 7 0.21
20 16 0.47
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (20 bp):
ATATTTTTATATATATATAC
Found at i:67007990 original size:24 final size:24
Alignment explanation
Indices: 67007963--67008015 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
67007953 ATTATTCATA
*
67007963 ATTTATATATATATACATATTTTT
1 ATTTATATATACATACATATTTTT
* *
67007987 ATTTATATGTACATACTTATTTTT
1 ATTTATATATACATACATATTTTT
*
67008011 TTTTA
1 ATTTA
67008016 AAATCTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTTATATATACATACATATTTTT
Found at i:67011798 original size:16 final size:15
Alignment explanation
Indices: 67011762--67011799 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
67011752 AAGATATTTT
*
67011762 AACAAATGATATTAA
1 AACAAATGAAATTAA
67011777 AACAAATGAAATTAA
1 AACAAATGAAATTAA
67011792 CAACAAAT
1 -AACAAAT
67011800 ACGGTGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (15 bp):
AACAAATGAAATTAA
Found at i:67028805 original size:18 final size:18
Alignment explanation
Indices: 67028782--67028874 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
67028772 CCCAACTACT
*
67028782 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
67028800 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
*
67028818 GTATATGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
67028836 GTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACC
* *
67028854 ATATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
67028872 GTA
1 GTA
67028875 AACGGTCGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:67028834 original size:36 final size:36
Alignment explanation
Indices: 67028782--67028874 Score: 132
Period size: 36 Copynumber: 2.6 Consensus size: 36
67028772 CCCAACTACT
* * *
67028782 GTATACGTGAACAGTACCGTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
*
67028818 GTATATGTGAATAGTACCGTATACGTAAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
* *
67028854 ATATACGTAAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
67028875 AACGGTCGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTAAATAGTGCC
Found at i:67047233 original size:22 final size:23
Alignment explanation
Indices: 67047206--67047248 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
67047196 ATTAAATTAA
67047206 AAAATAA-AAAGAAACGAATAGT
1 AAAATAATAAAGAAACGAATAGT
*
67047228 AAAATAATAAAGAAAGGAATA
1 AAAATAATAAAGAAACGAATA
67047249 ATTTATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (23 bp):
AAAATAATAAAGAAACGAATAGT
Found at i:67047948 original size:15 final size:16
Alignment explanation
Indices: 67047930--67047967 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
67047920 AAGATATTTT
67047930 AACAAATGAAATTAA-
1 AACAAATGAAATTAAC
*
67047945 AACAAATGAATTTAAC
1 AACAAATGAAATTAAC
67047961 AACAAAT
1 AACAAAT
67047968 ACGGTGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (16 bp):
AACAAATGAAATTAAC
Done.