Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 23 of 228
Found at i:7441234 original size:40 final size:41
Alignment explanation
Indices: 7441172--7441287 Score: 121
Period size: 40 Copynumber: 2.9 Consensus size: 41
7441162 GTTTGGAACA
* * *
7441172 AAAGCGCCACAAAAAATCGAGCATTAGCGGCGATTTAGCC-
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTAGCCG
** * *
7441212 AAAGCGCCGCTAAAGGTAGAGCATCAGCGGCGATTT-TCCG
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTAGCCG
* * *
7441252 GAAGCGCCGCTAAAAATAG-GAATTAGCGGCGTTTTA
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTA
7441288 TATAAAGCGC
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
39 15 0.25
40 46 0.75
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (41 bp):
AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTAGCCG
Found at i:7441401 original size:41 final size:41
Alignment explanation
Indices: 7441344--7441541 Score: 227
Period size: 41 Copynumber: 4.8 Consensus size: 41
7441334 TTTTTTAAAC
*
7441344 CTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGGT
** *
7441385 CTTTAGCGGCGTTTTTATCTGAA-CGCCGCTAATGCTCTAGC
1 CTTTAGCGGCGTTTTTATCT-AAGCGCCGCTAATGCTCGGGT
* * *
7441426 CTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGGT
* * * * * **
7441467 CTTTAGCGGCATTTTTAACTGAGCGCCACTAATTCTCTTGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGGT
* * *
7441508 CTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATG
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATG
7441542 TATTTACCTT
Statistics
Matches: 128, Mismatches: 27, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
40 2 0.02
41 124 0.97
42 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.34
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGGT
Found at i:7441482 original size:82 final size:82
Alignment explanation
Indices: 7441343--7441541 Score: 272
Period size: 82 Copynumber: 2.4 Consensus size: 82
7441333 ATTTTTTAAA
* * * *
7441343 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTATCTGAA
1 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCATTTTTAACTGAA
*
7441408 CGCCGCTAATGCTCTAG
66 CGCCACTAATGCTCTAG
* * *
7441425 CCTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTCGGATCTTTAGCGGCATTTTTAACTGAG
1 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCATTTTTAACTGAA
* *
7441490 CGCCACTAATTCTCTTG
66 CGCCACTAATGCTCTAG
* * * *
7441507 TCTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATG
1 CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATG
7441542 TATTTACCTT
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 101 1.00
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.34
Consensus pattern (82 bp):
CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCATTTTTAACTGAA
CGCCACTAATGCTCTAG
Found at i:7441553 original size:82 final size:82
Alignment explanation
Indices: 7441343--7441564 Score: 221
Period size: 82 Copynumber: 2.7 Consensus size: 82
7441333 ATTTTTTAAA
* * ** * ** * *
7441343 CCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTATCTGAA
1 CCTTCAGCGGCGTTTGTAGATAAGCGCCGCTAATGCTCGGACCTTTAGCGGCATTTTTAACTGAA
*
7441408 CGCCGCTAATGCTCTAG
66 CGCCACTAATGCTCTAG
** * * * *
7441425 CCTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTCGGATCTTTAGCGGCATTTTTAACTGAG
1 CCTTCAGCGGCGTTTGTAGATAAGCGCCGCTAATGCTCGGACCTTTAGCGGCATTTTTAACTGAA
* *
7441490 CGCCACTAATTCTCTTG
66 CGCCACTAATGCTCTAG
* * ***
7441507 TCTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATG-TATTTACCTTTAGCGGCATTTTT
1 CCTTCAGCGGCGTTTGTAGATAAGCGCCGCTAATGCT-CGGACCTTTAGCGGCATTTTT
7441565 GCCGAAGCGC
Statistics
Matches: 119, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
81 1 0.01
82 118 0.99
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (82 bp):
CCTTCAGCGGCGTTTGTAGATAAGCGCCGCTAATGCTCGGACCTTTAGCGGCATTTTTAACTGAA
CGCCACTAATGCTCTAG
Found at i:7441557 original size:41 final size:41
Alignment explanation
Indices: 7441342--7441581 Score: 179
Period size: 41 Copynumber: 5.9 Consensus size: 41
7441332 CATTTTTTAA
* *
7441342 ACCTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGGT
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATG-TC-TGT
*
7441385 --CTTTAGCGGCGTTTTTATCTGAA-CGCCGCTAATG-CTCT
1 ACCTTTAGCGGCGTTTTTATCT-AAGCGCCGCTAATGTCTGT
* * *
7441423 AGCCTTTGGCGGCGTTTTTATATAAGCGCCGCTAATG-CTCGG
1 A-CCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGTCT-GT
* * * * * *
7441465 ATCTTTAGCGGCATTTTTAACTGAGCGCCACTAATTCTCTTGT
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAA-TGTC-TGT
* * * * *
7441508 --CTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATGTATTT
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGTCTGT
* ** *
7441547 ACCTTTAGCGGCATTTTTGCCGAAGCGCCGCTAAT
1 ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAAT
7441582 AGTAACAAAA
Statistics
Matches: 155, Mismatches: 31, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 4 0.03
41 140 0.90
42 4 0.03
43 2 0.01
44 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (41 bp):
ACCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGTCTGT
Found at i:7441573 original size:123 final size:123
Alignment explanation
Indices: 7441344--7441581 Score: 273
Period size: 123 Copynumber: 1.9 Consensus size: 123
7441334 TTTTTTAAAC
* * * * * *
7441344 CTTTAGCGGCGTTTTTATCTAAGCACCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTATCTGAAC
1 CTTTAGCGGCATTTTTAACTAAGCACCACTAATGCTCGGGTCTTCAGCGGCGTTTGTAGCTGAAC
* * * * *
7441409 GCCGCTAATGCTCTAGCCTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTCGGAT
66 GCCGCTAATGATCTAGCCTTTAGCGGCATTTTTACAGAAGCGCCGCTAATGCTCGGAT
* * * **
7441467 CTTTAGCGGCATTTTTAACTGAGCGCCACTAATTCTCTTGTCTTCAGCGGCGTTTGTAGCT-AAG
1 CTTTAGCGGCATTTTTAACTAAGCACCACTAATGCTCGGGTCTTCAGCGGCGTTTGTAGCTGAA-
* * *
7441531 CGCCGCTAATGTATTTA-CCTTTAGCGGCATTTTTGCCGAAGCGCCGCTAAT
65 CGCCGCTAATG-ATCTAGCCTTTAGCGGCATTTTTACAGAAGCGCCGCTAAT
7441582 AGTAACAAAA
Statistics
Matches: 94, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
122 2 0.02
123 89 0.95
124 3 0.03
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (123 bp):
CTTTAGCGGCATTTTTAACTAAGCACCACTAATGCTCGGGTCTTCAGCGGCGTTTGTAGCTGAAC
GCCGCTAATGATCTAGCCTTTAGCGGCATTTTTACAGAAGCGCCGCTAATGCTCGGAT
Found at i:7442120 original size:15 final size:15
Alignment explanation
Indices: 7442085--7442121 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
7442075 TTTAAGGTTA
7442085 ATTTAGGGGTTAGAG
1 ATTTAGGGGTTAGAG
*
7442100 -TTTAGGGGTTTGAG
1 ATTTAGGGGTTAGAG
7442114 ATTTAGGG
1 ATTTAGGG
7442122 TTTCAACGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (15 bp):
ATTTAGGGGTTAGAG
Found at i:7442122 original size:14 final size:13
Alignment explanation
Indices: 7442052--7442124 Score: 51
Period size: 14 Copynumber: 5.5 Consensus size: 13
7442042 TAAGGAGTAC
*
7442052 GGGTATAGATTTA
1 GGGTTTAGATTTA
* *
7442065 AGGTTTGGGATTTA
1 GGGTTT-AGATTTA
*
7442079 AGG-TTA-ATTTA
1 GGGTTTAGATTTA
*
7442090 GGGGTTAGAGTTTA
1 GGGTTTAGA-TTTA
7442104 GGGGTTTGAGATTTA
1 -GGGTTT-AGATTTA
7442119 GGGTTT
1 GGGTTT
7442125 CAACGGTCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
11 7 0.15
12 3 0.06
13 7 0.15
14 19 0.40
15 9 0.19
16 3 0.06
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (13 bp):
GGGTTTAGATTTA
Found at i:7442837 original size:7 final size:7
Alignment explanation
Indices: 7442827--7442903 Score: 57
Period size: 7 Copynumber: 10.4 Consensus size: 7
7442817 AATTTAATGT
7442827 TTAGGGG
1 TTAGGGG
7442834 TTAGGGG
1 TTAGGGG
7442841 ATTTAGGGG
1 --TTAGGGG
*
7442850 TTAAGGG
1 TTAGGGG
* *
7442857 TTA-TGT
1 TTAGGGG
7442863 TTAGGGG
1 TTAGGGG
7442870 TTAGGGG
1 TTAGGGG
7442877 ATTTAGGGG
1 --TTAGGGG
* *
7442886 TAAAGGG
1 TTAGGGG
7442893 TTAAGGGG
1 TT-AGGGG
7442901 TTA
1 TTA
7442904 TGGATTTGGG
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
6 4 0.07
7 31 0.56
8 6 0.11
9 14 0.25
ACGTcount: A:0.22, C:0.00, G:0.45, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:7442870 original size:36 final size:36
Alignment explanation
Indices: 7442823--7442895 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
7442813 TGAAAATTTA
*
7442823 ATGTTTAGGGGTTAGGGGATTTAGGGGTTAAGGGTT
1 ATGTTTAGGGGTTAGGGGATTTAGGGGTAAAGGGTT
7442859 ATGTTTAGGGGTTAGGGGATTTAGGGGTAAAGGGTT
1 ATGTTTAGGGGTTAGGGGATTTAGGGGTAAAGGGTT
7442895 A
1 A
7442896 AGGGGTTATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.34
Consensus pattern (36 bp):
ATGTTTAGGGGTTAGGGGATTTAGGGGTAAAGGGTT
Found at i:7446334 original size:22 final size:23
Alignment explanation
Indices: 7446309--7446355 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
7446299 AATTAATTAG
7446309 TATTTCATAAT-TACAT-ACTAAT
1 TATTT-ATAATATACATAACTAAT
*
7446331 TA-TTATATTATACATAACTAAT
1 TATTTATAATATACATAACTAAT
7446353 TAT
1 TAT
7446356 ATTTATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
20 4 0.19
21 7 0.33
22 10 0.48
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTTATAATATACATAACTAAT
Found at i:7446353 original size:33 final size:33
Alignment explanation
Indices: 7446278--7446354 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
7446268 ATCTAATATT
*
7446278 ATAATAAATTACATACTAATTAATTAATTAGTAT
1 ATAAT-AATTACATACTAATTAATTAATTAGTAC
* *
7446312 TTCATAATTACATACTAATT-ATTATATTA-TAC
1 ATAATAATTACATACTAATTAATTA-ATTAGTAC
7446344 ATAACTAATTA
1 ATAA-TAATTA
7446355 TATTTATCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
32 8 0.22
33 25 0.69
34 3 0.08
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.43
Consensus pattern (33 bp):
ATAATAATTACATACTAATTAATTAATTAGTAC
Found at i:7446365 original size:19 final size:22
Alignment explanation
Indices: 7446320--7446366 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
7446310 ATTTCATAAT
7446320 TACAT-ACTAATTATTATATTA
1 TACATAACTAATTATTATATTA
7446341 TACATAACTAATTA-TAT-TTA
1 TACATAACTAATTATTATATTA
7446361 T-CATAA
1 TACATAA
7446367 ATTACTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.20
20 4 0.16
21 8 0.32
22 8 0.32
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (22 bp):
TACATAACTAATTATTATATTA
Found at i:7446374 original size:45 final size:46
Alignment explanation
Indices: 7446324--7446432 Score: 116
Period size: 50 Copynumber: 2.3 Consensus size: 46
7446314 CATAATTACA
* *
7446324 TACTAA-TTATTATATTATACATAAC-TA-ATTATATTTATCATAAAT
1 TACTAACTTATTATATTATAC-T-ACTTACATTATAATTAACATAAAT
7446369 TACTAACTTATAATTAATATTATACTACTTACATTATAATTAACATAAAT
1 TACTAAC-T-T-ATT-ATATTATACTACTTACATTATAATTAACATAAAT
*
7446419 TAATAACTTATTAT
1 TACTAACTTATTAT
7446433 TTAATCGTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
45 6 0.11
46 2 0.04
47 4 0.07
48 4 0.07
49 7 0.13
50 31 0.57
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (46 bp):
TACTAACTTATTATATTATACTACTTACATTATAATTAACATAAAT
Found at i:7446406 original size:50 final size:50
Alignment explanation
Indices: 7446335--7446429 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
7446325 ACTAATTATT
* * *
7446335 ATATTATACATAACTAATTATATTTATCATAAATTACTAACTTATAATTA
1 ATATTATACATAACTAATTATAATTAACATAAATTAATAACTTATAATTA
7446385 ATATTATAC-T-ACTTACATTATAATTAACATAAATTAATAACTTAT
1 ATATTATACATAAC-TA-ATTATAATTAACATAAATTAATAACTTAT
7446430 TATTTAATCG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 2 0.05
49 3 0.08
50 35 0.88
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (50 bp):
ATATTATACATAACTAATTATAATTAACATAAATTAATAACTTATAATTA
Found at i:7446498 original size:27 final size:27
Alignment explanation
Indices: 7446440--7446524 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 27
7446430 TATTTAATCG
7446440 TATTTTTATACTAAATT--A-AACTTATA
1 TATTTTTATAC-AAATTACATAACTTA-A
7446466 TAATTTTTATACAAATTACATAACTTAA
1 T-ATTTTTATACAAATTACATAACTTAA
*
7446494 TATTTATATTATACAACTTACATAACTTAA
1 TA-TT-T-TTATACAAATTACATAACTTAA
7446524 T
1 T
7446525 TAATTAATAT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
26 6 0.12
27 11 0.22
28 5 0.10
29 7 0.14
30 22 0.43
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.46
Consensus pattern (27 bp):
TATTTTTATACAAATTACATAACTTAA
Found at i:7446546 original size:34 final size:34
Alignment explanation
Indices: 7446472--7446781 Score: 264
Period size: 34 Copynumber: 9.7 Consensus size: 34
7446462 TATATAATTT
*
7446472 TTATACA-AA-TTACATAACTTAA-T-ATTTATA
1 TTATACATAACTTACATAACTTAATTAATTAATA
7446502 TTATAC--AACTTACATAACTTAATTAATTAATA
1 TTATACATAACTTACATAACTTAATTAATTAATA
7446534 TTATACATAACTTACATTAA--T-ATT-A-TACATA
1 TTATACATAACTTACA-TAACTTAATTAATTA-ATA
*
7446565 -AATTACATAAC-T---TAA--TAATTAATTAATA
1 TTA-TACATAACTTACATAACTTAATTAATTAATA
* *
7446593 TTATACATAAATTACATAACTTAATGAATTAATA
1 TTATACATAACTTACATAACTTAATTAATTAATA
*
7446627 TTATACATAAATTACATAACTTAATTAATTAATTAGTA
1 TTATACATAACTTACATAACTTAATTAATT-A--A-TA
*
7446665 TTATACATAAATTACATAACTTAATTAATTAATA
1 TTATACATAACTTACATAACTTAATTAATTAATA
7446699 TTATACATAACTTACATTAA--T-ATT-A-TACATA
1 TTATACATAACTTACA-TAACTTAATTAATTA-ATA
*
7446730 -AATTACATAAC-T---TAA-TTAATTAATTAATA
1 TTA-TACATAACTTACATAACTTAATTAATTAATA
7446759 TTATACATAACTTACATAACTTA
1 TTATACATAACTTACATAACTTA
7446782 CAACTTACAT
Statistics
Matches: 236, Mismatches: 9, Indels: 66
0.76 0.03 0.21
Matches are distributed among these distances:
26 7 0.03
27 4 0.02
28 14 0.06
29 18 0.08
30 31 0.13
31 25 0.11
32 21 0.09
33 5 0.02
34 69 0.29
35 8 0.03
37 2 0.01
38 32 0.14
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.41
Consensus pattern (34 bp):
TTATACATAACTTACATAACTTAATTAATTAATA
Found at i:7446616 original size:93 final size:86
Alignment explanation
Indices: 7446478--7446643 Score: 242
Period size: 93 Copynumber: 1.8 Consensus size: 86
7446468 ATTTTTATAC
* *
7446478 AAATTACATAACTTAATATTTATATTATACAACTTACATAACTTAATTAATTAATATTATACATA
1 AAATTACATAACTTAATATTTATATTATACAAATTACATAACTTAATGAATTAATATTATACATA
*
7446543 ACTTACATTAATATTATACAT
66 AATTACATTAATATTATACAT
7446564 AAATTACATAACTTAATAATTAATTAATATTATACATAAATTACATAACTTAATGAATTAATATT
1 AAATTACATAACTTAAT-A-T--TT-ATATTATAC--AAATTACATAACTTAATGAATTAATATT
7446629 ATACATAAATTACAT
59 ATACATAAATTACAT
7446644 AACTTAATTA
Statistics
Matches: 70, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
86 17 0.24
87 1 0.01
88 1 0.01
90 2 0.03
91 9 0.13
93 40 0.57
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.40
Consensus pattern (86 bp):
AAATTACATAACTTAATATTTATATTATACAAATTACATAACTTAATGAATTAATATTATACATA
AATTACATTAATATTATACAT
Found at i:7446682 original size:9 final size:9
Alignment explanation
Indices: 7446668--7447165 Score: 98
Period size: 9 Copynumber: 54.8 Consensus size: 9
7446658 ATTAGTATTA
7446668 TACATAAAT
1 TACATAAAT
*
7446677 TACATAACT
1 TACATAAAT
*
7446686 TA-ATTAAT
1 TACATAAAT
*
7446694 TA-AT-ATT
1 TACATAAAT
*
7446701 ATACATAACT
1 -TACATAAAT
7446711 TACATTAATATT
1 TACA-TAA-A-T
7446723 ATACATAAAT
1 -TACATAAAT
*
7446733 TACATAACT
1 TACATAAAT
*
7446742 TA-ATTAAT
1 TACATAAAT
7446750 TA-ATTAATATT
1 TACA-TAA-A-T
*
7446761 ATACATAACT
1 -TACATAAAT
*
7446771 TACATAACT
1 TACATAAAT
*
7446780 TAC--AACT
1 TACATAAAT
*
7446787 TACATAACT
1 TACATAAAT
***
7446796 TACATTTTT
1 TACATAAAT
*
7446805 TA-AT-TAT
1 TACATAAAT
7446812 T-CATAAAT
1 TACATAAAT
*
7446820 TACATAACT
1 TACATAAAT
7446829 TACATTAATATT
1 TACA-TAA-A-T
*
7446841 ATACATAAAC
1 -TACATAAAT
*
7446851 TACATAACT
1 TACATAAAT
*
7446860 TA-ATTAAT
1 TACATAAAT
7446868 ATACATAAAT
1 -TACATAAAT
*
7446878 TACATAACT
1 TACATAAAT
7446887 TACATTAATAT
1 TACA-TAA-AT
7446898 ATACATAAAT
1 -TACATAAAT
*
7446908 TACATAACT
1 TACATAAAT
* *
7446917 TA-GTTAAT
1 TACATAAAT
*
7446925 TA-AT-ATT
1 TACATAAAT
*
7446932 ATACATAACT
1 -TACATAAAT
*
7446942 TACATAACT
1 TACATAAAT
*
7446951 TAC--AACT
1 TACATAAAT
*
7446958 TACATAACT
1 TACATAAAT
***
7446967 TACATTTTTT
1 TACA-TAAAT
*
7446977 TA-AT-TAT
1 TACATAAAT
7446984 T-CATAAAT
1 TACATAAAT
*
7446992 TACATAACT
1 TACATAAAT
7447001 TACATTAATATT
1 TACA-TAA-A-T
7447013 ATACATAAAT
1 -TACATAAAT
*
7447023 TACATAACT
1 TACATAAAT
* *
7447032 TA-GTTAAT
1 TACATAAAT
*
7447040 TA-AT-ATT
1 TACATAAAT
*
7447047 ATACATAACT
1 -TACATAAAT
*
7447057 TAC---AAC
1 TACATAAAT
*
7447063 TACATAACT
1 TACATAAAT
***
7447072 TACATTTTTT
1 TACA-TAAAT
*
7447082 TA-AT-TAT
1 TACATAAAT
7447089 T-CATAAAT
1 TACATAAAT
*
7447097 TACATAACT
1 TACATAAAT
7447106 TACATTAATATT
1 TACA-TAA-A-T
7447118 ATACATAAAT
1 -TACATAAAT
*
7447128 TACATAACT
1 TACATAAAT
7447137 TACATTAATATT
1 TACA-TAA-A-T
7447149 ATACATAAAT
1 -TACATAAAT
7447159 TACATAA
1 TACATAA
7447166 CTTAGTTAAT
Statistics
Matches: 372, Mismatches: 60, Indels: 114
0.68 0.11 0.21
Matches are distributed among these distances:
6 4 0.01
7 35 0.09
8 50 0.13
9 178 0.48
10 45 0.12
11 10 0.03
12 29 0.08
13 21 0.06
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.40
Consensus pattern (9 bp):
TACATAAAT
Found at i:7446684 original size:72 final size:71
Alignment explanation
Indices: 7446549--7446715 Score: 298
Period size: 72 Copynumber: 2.3 Consensus size: 71
7446539 CATAACTTAC
7446549 ATTAATATTATACATAAATTACATAACTTAATAATTAATTAATATTATACATAAATTACATAACT
1 ATTAATATTATACATAAATTACATAACTTAATAATTAATTAATATTATACATAAATTACATAACT
7446614 TAATGA
66 TAATGA
*
7446620 ATTAATATTATACATAAATTACATAACTTAATTAATTAATTAGTATTATACATAAATTACATAAC
1 ATTAATATTATACATAAATTACATAACTTAA-TAATTAATTAATATTATACATAAATTACATAAC
*
7446685 TTAATTA
65 TTAATGA
*
7446692 ATTAATATTATACATAACTTACAT
1 ATTAATATTATACATAAATTACAT
7446716 TAATATTATA
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 31 0.34
72 61 0.66
ACGTcount: A:0.49, C:0.09, G:0.01, T:0.41
Consensus pattern (71 bp):
ATTAATATTATACATAAATTACATAACTTAATAATTAATTAATATTATACATAAATTACATAACT
TAATGA
Found at i:7446705 original size:25 final size:22
Alignment explanation
Indices: 7446677--7446772 Score: 78
Period size: 22 Copynumber: 4.5 Consensus size: 22
7446667 ATACATAAAT
7446677 TACATAACTTAATTAATTAATATTA
1 TACATAACTT-A--AATTAATATTA
*
7446702 TACATAACTTACATTAATATTA
1 TACATAACTTAAATTAATATTA
* * *
7446724 TACATAAATTACA-TAA-CTTA
1 TACATAACTTAAATTAATATTA
*
7446744 -A-TTAA-TT-AATTAATATTA
1 TACATAACTTAAATTAATATTA
7446762 TACATAACTTA
1 TACATAACTTA
7446773 CATAACTTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
16 1 0.02
17 5 0.09
18 6 0.10
19 2 0.03
20 6 0.10
21 5 0.09
22 22 0.38
24 1 0.02
25 10 0.17
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (22 bp):
TACATAACTTAAATTAATATTA
Found at i:7446788 original size:16 final size:16
Alignment explanation
Indices: 7446767--7446799 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7446757 TATTATACAT
7446767 AACTTACATAACTTAC
1 AACTTACATAACTTAC
7446783 AACTTACATAACTTAC
1 AACTTACATAACTTAC
7446799 A
1 A
7446800 TTTTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:7446796 original size:25 final size:25
Alignment explanation
Indices: 7446762--7446971 Score: 85
Period size: 25 Copynumber: 8.6 Consensus size: 25
7446752 ATTAATATTA
7446762 TACATAACTTACATAACTTACAACT
1 TACATAACTTACATAACTTACAACT
* **
7446787 TACATAACTTACAT--TTTTTAA-T
1 TACATAACTTACATAACTTACAACT
*
7446809 TATTCATAAATTACATAACTTAC-A-T
1 TA--CATAACTTACATAACTTACAACT
*
7446834 TA-AT-ATTATACATAAAC-TACATAACT
1 TACATAACT-TACAT-AACTTAC--AACT
*
7446860 TA-ATTAA-TATACATAAATTACATAACT
1 TACA-TAACT-TACATAACTTAC--AACT
* *
7446887 TACATTAA--TATAT-ACATA-AA-T
1 TACA-TAACTTACATAACTTACAACT
** *
7446908 TACATAACTTAGTTAA-TTA-ATATT
1 TACATAACTTACATAACTTACA-ACT
7446932 ATACATAACTTACATAACTTACAACT
1 -TACATAACTTACATAACTTACAACT
7446958 TACATAACTTACAT
1 TACATAACTTACAT
7446972 TTTTTTAATT
Statistics
Matches: 145, Mismatches: 18, Indels: 44
0.70 0.09 0.21
Matches are distributed among these distances:
20 3 0.02
21 7 0.05
22 21 0.14
23 9 0.06
24 12 0.08
25 50 0.34
26 17 0.12
27 20 0.14
28 6 0.04
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (25 bp):
TACATAACTTACATAACTTACAACT
Found at i:7446945 original size:34 final size:30
Alignment explanation
Indices: 7446657--7447196 Score: 308
Period size: 31 Copynumber: 17.8 Consensus size: 30
7446647 TTAATTAATT
*
7446657 AATTAGTATTATACATAAATTACATAACTT-
1 AATTAATA-TATACATAAATTACATAACTTA
* *
7446687 AATTAAT-TA-ATAT-TA-TACATAACTTA
1 AATTAATATATACATAAATTACATAACTTA
*
7446713 CATTAATATTATACATAAATTACATAACTT-
1 AATTAATA-TATACATAAATTACATAACTTA
*
7446743 AATTAAT-TAATTA-AT-ATTATACATAACTTA
1 AATTAATAT-A-TACATAAAT-TACATAACTTA
* * *
7446773 CA-TAA-CT-TAC--AACTTACATAACTTA
1 AATTAATATATACATAAATTACATAACTTA
* *
7446798 CATTTTTTAAT-TATTCATAAATTACATAACTTA
1 -A---ATTAATATATACATAAATTACATAACTTA
* *
7446831 CATTAATATTATACATAAACTACATAACTT-
1 AATTAATA-TATACATAAATTACATAACTTA
7446861 AATT-A-ATATACATAAATTACATAACTTA
1 AATTAATATATACATAAATTACATAACTTA
*
7446889 CATTAATATATACATAAATTACATAACTTA
1 AATTAATATATACATAAATTACATAACTTA
*
7446919 GTTAATTAATATTATACATAACTTACATAACTT-
1 ---AATTAATA-TATACATAAATTACATAACTTA
* * *
7446952 -A-CAA-CT-TACATAACTTACAT---TT-
1 AATTAATATATACATAAATTACATAACTTA
** *
7446974 TTTTAAT-TATTCATAAATTACATAACTTA
1 AATTAATATATACATAAATTACATAACTTA
*
7447003 CATTAATATTATACATAAATTACATAACTTA
1 AATTAATA-TATACATAAATTACATAACTTA
*
7447034 GTTAATTAATATTATACATAACTTACAACTACATAACTTA
1 ---AATTAATA-TATAC---A--TA-AATTACATAACTTA
* ** *
7447074 CATTTTTTTAATTATTCATAAATTACATAACTTA
1 -A-ATTAAT-A-TATACATAAATTACATAACTTA
*
7447108 CATTAATATTATACATAAATTACATAACTTA
1 AATTAATA-TATACATAAATTACATAACTTA
*
7447139 CATTAATATTATACATAAATTACATAACTTA
1 AATTAATA-TATACATAAATTACATAACTTA
*
7447170 GTTAATTAATATTATACATAACTTACA
1 ---AATTAATA-TATACATAAATTACA
7447197 ACTTACATAA
Statistics
Matches: 408, Mismatches: 47, Indels: 106
0.73 0.08 0.19
Matches are distributed among these distances:
22 2 0.00
24 3 0.01
25 47 0.12
26 12 0.03
27 23 0.06
28 15 0.04
29 33 0.08
30 46 0.11
31 106 0.26
32 3 0.01
33 21 0.05
34 68 0.17
35 2 0.00
37 2 0.00
38 1 0.00
39 5 0.01
40 19 0.05
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.41
Consensus pattern (30 bp):
AATTAATATATACATAAATTACATAACTTA
Found at i:7446959 original size:16 final size:16
Alignment explanation
Indices: 7446938--7446970 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7446928 TATTATACAT
7446938 AACTTACATAACTTAC
1 AACTTACATAACTTAC
7446954 AACTTACATAACTTAC
1 AACTTACATAACTTAC
7446970 A
1 A
7446971 TTTTTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:7447067 original size:105 final size:103
Alignment explanation
Indices: 7446942--7447162 Score: 390
Period size: 105 Copynumber: 2.1 Consensus size: 103
7446932 ATACATAACT
7446942 TACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCATAAATTACATAACTTACATT
1 TACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCATAAATTACATAACTTACATT
7447007 AATATTATACATAAATTACATAACTTAGTTAATTAATATTA
66 AATATTATACATAAATTACATAACTTA---AATTAATATTA
7447048 TACATAACTTACAAC-TACATAACTTACATTTTTTTAATTATTCATAAATTACATAACTTACATT
1 TACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCATAAATTACATAACTTACATT
*
7447112 AATATTATACATAAATTACATAACTTACATTAATATTA
66 AATATTATACATAAATTACATAACTTAAATTAATATTA
*
7447150 TACATAAATTACA
1 TACATAACTTACA
7447163 TAACTTAGTT
Statistics
Matches: 113, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
102 22 0.19
105 76 0.67
106 15 0.13
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.41
Consensus pattern (103 bp):
TACATAACTTACAACTTACATAACTTACATTTTTTTAATTATTCATAAATTACATAACTTACATT
AATATTATACATAAATTACATAACTTAAATTAATATTA
Found at i:7447208 original size:9 final size:9
Alignment explanation
Indices: 7446762--7447391 Score: 186
Period size: 9 Copynumber: 72.2 Consensus size: 9
7446752 ATTAATATTA
7446762 TACATAACT
1 TACATAACT
7446771 TACATAACT
1 TACATAACT
7446780 TAC--AACT
1 TACATAACT
7446787 TACATAACT
1 TACATAACT
***
7446796 TACATTTTT
1 TACATAACT
*
7446805 TA-ATTA-T
1 TACATAACT
*
7446812 T-CATAAAT
1 TACATAACT
7446820 TACATAACT
1 TACATAACT
*
7446829 TACATTAATATT
1 TACA-T-A-ACT
7446841 ATACATAAAC-
1 -TACAT-AACT
7446851 TACATAACT
1 TACATAACT
7446860 TA-ATTAA-T
1 TACA-TAACT
*
7446868 ATACATAAAT
1 -TACATAACT
7446878 TACATAACT
1 TACATAACT
*
7446887 TACATTAATAT
1 TACA-TAA-CT
*
7446898 ATACATAAAT
1 -TACATAACT
7446908 TACATAACT
1 TACATAACT
**
7446917 TAGTTAA-T
1 TACATAACT
*
7446925 TA-AT-ATT
1 TACATAACT
7446932 ATACATAACT
1 -TACATAACT
7446942 TACATAACT
1 TACATAACT
7446951 TAC--AACT
1 TACATAACT
7446958 TACATAACT
1 TACATAACT
***
7446967 TACATTTTTT
1 TACA-TAACT
*
7446977 TA-ATTA-T
1 TACATAACT
*
7446984 T-CATAAAT
1 TACATAACT
7446992 TACATAACT
1 TACATAACT
*
7447001 TACATTAATATT
1 TACA-T-A-ACT
*
7447013 ATACATAAAT
1 -TACATAACT
7447023 TACATAACT
1 TACATAACT
**
7447032 TAGTTAA-T
1 TACATAACT
*
7447040 TA-AT-ATT
1 TACATAACT
7447047 ATACATAACT
1 -TACATAACT
7447057 TAC--AAC-
1 TACATAACT
7447063 TACATAACT
1 TACATAACT
***
7447072 TACATTTTTT
1 TACA-TAACT
*
7447082 TA-ATTA-T
1 TACATAACT
*
7447089 T-CATAAAT
1 TACATAACT
7447097 TACATAACT
1 TACATAACT
*
7447106 TACATTAATATT
1 TACA-T-A-ACT
*
7447118 ATACATAAAT
1 -TACATAACT
7447128 TACATAACT
1 TACATAACT
*
7447137 TACATTAATATT
1 TACA-T-A-ACT
*
7447149 ATACATAAAT
1 -TACATAACT
7447159 TACATAACT
1 TACATAACT
**
7447168 TAGTTAA-T
1 TACATAACT
*
7447176 TA-AT-ATT
1 TACATAACT
7447183 ATACATAACT
1 -TACATAACT
7447193 TAC--AACT
1 TACATAACT
7447200 TACATAACT
1 TACATAACT
***
7447209 TACATTTTTT
1 TACA-TAACT
*
7447219 TA-ATTA-T
1 TACATAACT
* *
7447226 T-CGTAAAT
1 TACATAACT
7447234 TACATAACT
1 TACATAACT
* *
7447243 TACTTAATT
1 TACATAACT
*
7447252 TTCATAA--
1 TACATAACT
*
7447259 TAAATAACT
1 TACATAACT
7447268 TACATAACT
1 TACATAACT
7447277 TACATAA--
1 TACATAACT
*
7447284 TACATAACG
1 TACATAACT
* *
7447293 TATATGACT
1 TACATAACT
7447302 TACATAACT
1 TACATAACT
7447311 TACAT-A--
1 TACATAACT
* *
7447317 -GCATAATT
1 TACATAACT
*
7447325 TTCATAA--
1 TACATAACT
*
7447332 TACACAACT
1 TACATAACT
*
7447341 TACATAATT
1 TACATAACT
*
7447350 TTCATAA--
1 TACATAACT
7447357 TA-ATAACT
1 TACATAACT
7447365 TACATAA--
1 TACATAACT
7447372 TACATAACT
1 TACATAACT
*
7447381 TACATAGCT
1 TACATAACT
7447390 TA
1 TA
7447392 ATTATACTTA
Statistics
Matches: 473, Mismatches: 73, Indels: 150
0.68 0.10 0.22
Matches are distributed among these distances:
5 3 0.01
6 11 0.02
7 74 0.16
8 43 0.09
9 261 0.55
10 35 0.07
11 12 0.03
12 18 0.04
13 16 0.03
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.40
Consensus pattern (9 bp):
TACATAACT
Found at i:7447263 original size:136 final size:136
Alignment explanation
Indices: 7446568--7447162 Score: 282
Period size: 136 Copynumber: 4.6 Consensus size: 136
7446558 ATACATAAAT
* * *
7446568 TACATAACTTA-ATAA-TTA-ATTAATATTATACATAAATTACATAACTTAATGAATTAATATTA
1 TACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTA
* ** *
7446630 TACATAAATTACATAACTTA-ATTAA-TTA-A-TTAGT-ATTATACATAAATTACATAACTTA-A
66 TACATAACTTAC--AACTTACA-TAACTTACATTTTTTAATTATTCATAAATTACATAACTTACA
7446689 TT-A-ATTA
128 TTAATATTA
* * *
7446696 -ATAT-TA-TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATTAAT
1 TACATAAATTACATAACTTACATTAATATTATACATAAATTACATAAC----TTAGTTAATT-A-
7446758 ATTATACATAACTTACATAACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTAC
60 A-TAT---T-A--TACATAACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTAC
7446823 ATAACTTACATTAATATTA
118 ATAACTTACATTAATATTA
* *
7446842 TACATAAACTACATAACTTA-ATT-A-A-TATACATAAATTACATAACTTA---CATTAATA-TA
1 TACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTA
* * * * ** * *
7446899 TACATAAATTAC-A-TAAC-TTAGTTA-A-TTAAT-ATTATACATAACTTACATAACTTAC----
66 TACATAACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTACATAACTTACATTA
*
7446954 A-ACT-
131 ATATTA
* * * * *
7446958 TACATAACTTACAT---TT--TTTTA-ATTATTCATAAATTACATAACTTA---CATTAATATTA
1 TACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTA
* ** * * * * *
7447014 TACATAAATTACATAACTTAGTTAA-TTA-ATATTATACATAACTT-A-CAACTACATAACTTAC
66 TACATAACTTAC--AACTTACATAACTTACATTTTTTA-ATTA-TTCATAAATTACATAACTTAC
**
7447075 ATTTTTTTAATTA
127 A--TTAAT-ATTA
* *
7447088 TTCATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA---CATTAATATTA
1 TACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTA
*
7447150 TACATAAATTACA
66 TACATAACTTACA
7447163 TAACTTAGTT
Statistics
Matches: 372, Mismatches: 41, Indels: 102
0.72 0.08 0.20
Matches are distributed among these distances:
112 2 0.01
113 4 0.01
114 29 0.08
115 14 0.04
116 12 0.03
117 2 0.01
118 2 0.01
119 6 0.02
120 5 0.01
121 13 0.03
122 27 0.07
123 4 0.01
124 1 0.00
125 7 0.02
126 7 0.02
127 7 0.02
128 38 0.10
129 2 0.01
130 13 0.03
131 1 0.00
132 9 0.02
133 3 0.01
134 2 0.01
135 8 0.02
136 47 0.13
137 1 0.00
138 4 0.01
139 10 0.03
140 4 0.01
141 15 0.04
142 3 0.01
143 23 0.06
144 3 0.01
145 20 0.05
146 5 0.01
147 4 0.01
148 4 0.01
149 11 0.03
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (136 bp):
TACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAGTTAATTAATATTA
TACATAACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTACATAACTTACATTA
ATATTA
Found at i:7447267 original size:25 final size:25
Alignment explanation
Indices: 7447237--7447372 Score: 111
Period size: 25 Copynumber: 5.6 Consensus size: 25
7447227 CGTAAATTAC
*
7447237 ATAACTTACTTAATTTTCATAATAA
1 ATAACTTACATAATTTTCATAATAA
* * *
7447262 ATAACTTACATAACTTACATAATAC
1 ATAACTTACATAATTTTCATAATAA
* * * * *
7447287 ATAACGTATATGACTTACATAACT--
1 ATAACTTACATAATTTTCATAA-TAA
* *
7447311 -T-ACATAGCATAATTTTCATAATAC
1 ATAACTTA-CATAATTTTCATAATAA
*
7447335 ACAACTTACATAATTTTCATAAT-A
1 ATAACTTACATAATTTTCATAATAA
7447359 ATAACTTACATAAT
1 ATAACTTACATAAT
7447373 ACATAACTTA
Statistics
Matches: 89, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
22 5 0.06
23 11 0.12
24 13 0.15
25 55 0.62
26 5 0.06
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.37
Consensus pattern (25 bp):
ATAACTTACATAATTTTCATAATAA
Found at i:7447271 original size:34 final size:34
Alignment explanation
Indices: 7447233--7447347 Score: 99
Period size: 34 Copynumber: 3.2 Consensus size: 34
7447223 TATTCGTAAA
7447233 TTACATAACTTACTTAATTTTCATAATAAATAAC
1 TTACATAACTTACTTAATTTTCATAATAAATAAC
* * * *
7447267 TTACATAACTTACATAA--TACATAACGTATATGAC
1 TTACATAACTTACTTAATTTTCATAA--TAAATAAC
* *
7447301 TTACATAACTTACATAGCATAATTTTCATAATACACAAC
1 TTACATAACTTAC-T----TAATTTTCATAATAAATAAC
7447340 TTACATAA
1 TTACATAA
7447348 TTTTCATAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
32 6 0.10
34 35 0.56
39 16 0.25
41 6 0.10
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (34 bp):
TTACATAACTTACTTAATTTTCATAATAAATAAC
Found at i:7447287 original size:16 final size:16
Alignment explanation
Indices: 7447268--7447386 Score: 87
Period size: 16 Copynumber: 7.9 Consensus size: 16
7447258 ATAAATAACT
7447268 TACATAACTTACATAA
1 TACATAACTTACATAA
* * *
7447284 TACATAACGTATATGACT
1 TACATAACTTACAT-A-A
7447302 TACATAACTTACAT-A
1 TACATAACTTACATAA
* * *
7447317 -GCATAATTTTCATAA
1 TACATAACTTACATAA
*
7447332 TACACAACTTACATAA
1 TACATAACTTACATAA
7447348 T---T---TT-CATAA
1 TACATAACTTACATAA
7447357 TA-ATAACTTACATAA
1 TACATAACTTACATAA
7447372 TACATAACTTACATA
1 TACATAACTTACATA
7447387 GCTTAATTAT
Statistics
Matches: 78, Mismatches: 14, Indels: 22
0.68 0.12 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
11 1 0.01
14 12 0.15
15 8 0.10
16 36 0.46
17 1 0.01
18 12 0.15
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:7459791 original size:3 final size:3
Alignment explanation
Indices: 7459783--7459810 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7459773 CTAAAATTGG
7459783 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7459811 TTATTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7459923 original size:3 final size:3
Alignment explanation
Indices: 7459910--7459940 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
7459900 AATATATATA
7459910 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
7459941 AGACTTCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7459955 original size:111 final size:111
Alignment explanation
Indices: 7459809--7460019 Score: 413
Period size: 111 Copynumber: 1.9 Consensus size: 111
7459799 ATAATAATAA
*
7459809 TATTATTATTATTATTATTGTAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTAATTATCA
1 TATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTAATTATCA
7459874 TCCGAGTGTGTTTAGTTGAAAATCACAATATATATATATTAATTAT
66 TCCGAGTGTGTTTAGTTGAAAATCACAATATATATATATTAATTAT
7459920 TATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTAATTATCA
1 TATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTAATTATCA
7459985 TCCGAGTGTGTTTAGTTGAAAATCACAATATATAT
66 TCCGAGTGTGTTTAGTTGAAAATCACAATATATAT
7460020 TTTAAAGGTA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 99 1.00
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.44
Consensus pattern (111 bp):
TATTATTATTATTATTATTATAGACTTCTAGTGATGTAGTGGATCTGTCATGGGTGTAATTATCA
TCCGAGTGTGTTTAGTTGAAAATCACAATATATATATATTAATTAT
Found at i:7460078 original size:18 final size:16
Alignment explanation
Indices: 7460034--7460079 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 16
7460024 AAGGTAGTTA
7460034 AAATATTATGTATAAT
1 AAATATTATGTATAAT
7460050 AATATAGTTATGTATTAAT
1 AA-ATA-TTATGTA-TAAT
7460069 ATAATATTATG
1 A-AATATTATG
7460080 ATAGATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.08
17 3 0.12
18 12 0.46
19 8 0.31
20 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (16 bp):
AAATATTATGTATAAT
Found at i:7468029 original size:49 final size:49
Alignment explanation
Indices: 7467939--7468044 Score: 126
Period size: 49 Copynumber: 2.2 Consensus size: 49
7467929 CCAGTTCATG
* *
7467939 GTGGTTATACGATCACATGTTCAAGTATAACTAGGGTTTCTAGTTGACA
1 GTGGTTATACGATCACATGTTCAAGTATAACTAGAGCTTCTAGTTGACA
* * *
7467988 GTGGTTATACGATCACGA-GTTTAAGTATAATTCA-AGCTTCTAGTTGATA
1 GTGGTTATACGATCAC-ATGTTCAAGTATAACT-AGAGCTTCTAGTTGACA
*
7468037 GTGATTAT
1 GTGGTTAT
7468045 GCGGTTACGG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 47 0.96
50 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (49 bp):
GTGGTTATACGATCACATGTTCAAGTATAACTAGAGCTTCTAGTTGACA
Found at i:7473333 original size:16 final size:16
Alignment explanation
Indices: 7473308--7473339 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7473298 ATATTAAAGC
7473308 ATATAAATTTAAAATT
1 ATATAAATTTAAAATT
*
7473324 ATATATATTTAAAATT
1 ATATAAATTTAAAATT
7473340 TTGTCACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATAAATTTAAAATT
Found at i:7473423 original size:10 final size:10
Alignment explanation
Indices: 7473408--7473468 Score: 63
Period size: 11 Copynumber: 5.9 Consensus size: 10
7473398 AAAAGTATTA
7473408 TTTTAAAATT
1 TTTTAAAATT
7473418 TTTTAAAATATT
1 TTTT-AAA-ATT
7473430 TTTTAGAAATT
1 TTTTA-AAATT
7473441 TTTTAGAAA--
1 TTTTA-AAATT
*
7473450 TTTTATAATT
1 TTTTAAAATT
7473460 TTTTAAAAT
1 TTTTAAAAT
7473469 ATAAATTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
8 2 0.05
9 5 0.11
10 12 0.27
11 16 0.36
12 9 0.20
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:7473441 original size:11 final size:11
Alignment explanation
Indices: 7473408--7473453 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
7473398 AAAAGTATTA
7473408 TTTTA-AAATT
1 TTTTAGAAATT
*
7473418 TTTTAAAATATT
1 TTTTAGAA-ATT
7473430 TTTTAGAAATT
1 TTTTAGAAATT
7473441 TTTTAGAAATT
1 TTTTAGAAATT
7473452 TT
1 TT
7473454 ATAATTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 5 0.15
11 18 0.55
12 10 0.30
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (11 bp):
TTTTAGAAATT
Found at i:7473453 original size:42 final size:43
Alignment explanation
Indices: 7473406--7473504 Score: 125
Period size: 42 Copynumber: 2.3 Consensus size: 43
7473396 CCAAAAGTAT
*
7473406 TATTTTAAAATTTTTTAAAATAT-TTTTTAGAAATTTTT-TAGAA
1 TATTTTAAAATTTTTTAAAATATAATTTTAG-AATTTTTATA-AA
*
7473449 -ATTTTATAATTTTTTAAAATATAAATTTTAGAATTTTTATAAA
1 TATTTTAAAATTTTTTAAAATAT-AATTTTAGAATTTTTATAAA
7473492 TATTTT-AAATTTT
1 TATTTTAAAATTTT
7473505 AAAAATTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
42 21 0.43
43 15 0.31
44 13 0.27
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (43 bp):
TATTTTAAAATTTTTTAAAATATAATTTTAGAATTTTTATAAA
Found at i:7473475 original size:24 final size:27
Alignment explanation
Indices: 7473447--7473505 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 27
7473437 AATTTTTTAG
*
7473447 AAATTTTATAATTTTT-TAAA-A-TAT
1 AAATTTTAGAATTTTTATAAATATTAT
*
7473471 AAATTTTAGAATTTTTATAAATATTTT
1 AAATTTTAGAATTTTTATAAATATTAT
7473498 AAATTTTA
1 AAATTTTA
7473506 AAAATTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 15 0.50
25 4 0.13
26 1 0.03
27 10 0.33
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (27 bp):
AAATTTTAGAATTTTTATAAATATTAT
Found at i:7473504 original size:18 final size:20
Alignment explanation
Indices: 7473404--7473532 Score: 86
Period size: 23 Copynumber: 6.2 Consensus size: 20
7473394 TTCCAAAAGT
7473404 ATTATTTTAAAATTTTTTAAAA
1 ATTATTTT-AAA-TTTTTAAAA
*
7473426 TATT-TTTTAGAAATTTTTTAGAA
1 -ATTATTTT--AAA-TTTTTAAAA
* *
7473449 ATT-TTATAATTTTTTAAAA
1 ATTATTTTAAATTTTTAAAA
* *
7473468 TATAAATTTTAGAATTTTTATAA
1 -AT-TATTTTA-AATTTTTAAAA
7473491 A-TATTTTAAA-TTTTAAAA
1 ATTATTTTAAATTTTTAAAA
*
7473509 ATTATTTTAATTATTTTAAAA
1 ATTATTTTAAAT-TTTTAAAA
7473530 ATT
1 ATT
7473533 TTGTTGGGTT
Statistics
Matches: 86, Mismatches: 12, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
18 8 0.09
19 18 0.21
20 10 0.12
21 11 0.13
22 15 0.17
23 24 0.28
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTATTTTAAATTTTTAAAA
Found at i:7473504 original size:19 final size:19
Alignment explanation
Indices: 7473473--7473532 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 19
7473463 TAAAATATAA
*
7473473 ATTTTAGAATTTTTATAAA-T
1 ATTTTA-AA-TTTTAAAAATT
7473493 ATTTTAAATTTTAAAAATT
1 ATTTTAAATTTTAAAAATT
7473512 ATTTTAATTATTTTAAAAATT
1 ATTTTAA--ATTTTAAAAATT
7473533 TTGTTGGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 8 0.22
19 10 0.28
20 6 0.17
21 12 0.33
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATTTTAAATTTTAAAAATT
Found at i:7473524 original size:28 final size:27
Alignment explanation
Indices: 7473470--7473528 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
7473460 TTTTAAAATA
* *
7473470 TAAATTTTAGAATTTTTATAAATATTT
1 TAAATTTTAAAATTATTATAAATATTT
* *
7473497 TAAATTTTAAAAATTATTTTAATTATTT
1 TAAATTTT-AAAATTATTATAAATATTT
7473525 TAAA
1 TAAA
7473529 AATTTTGTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (27 bp):
TAAATTTTAAAATTATTATAAATATTT
Found at i:7478919 original size:21 final size:20
Alignment explanation
Indices: 7478882--7478920 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7478872 ACAATAATTA
*
7478882 AATAAAAAATTTAAAATATT
1 AATAAAAAATATAAAATATT
7478902 AATAAAAAATATATAAATA
1 AATAAAAAATATA-AAATA
7478921 AAATTCATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AATAAAAAATATAAAATATT
Found at i:7479112 original size:61 final size:65
Alignment explanation
Indices: 7478994--7479127 Score: 231
Period size: 61 Copynumber: 2.1 Consensus size: 65
7478984 ATTAATTTTC
7478994 GATTCAAGTGATTACCTTTTAATCAGTTTTCGTTGGCTTTCGTTTCATGGGTCAATTATAAAGTT
1 GATTCAAGTGATTACCTTTTAATCAGTTTTCG-TGGCTTTCGTTTCATGGGTCAATTATAAAGTT
7479059 T
65 T
7479060 GATTCAA-T-ATTACCTTTTAATCAG-TTTCG-GGCTTTCGTTTCATGGGTCAATTATAAAGTTT
1 GATTCAAGTGATTACCTTTTAATCAGTTTTCGTGGCTTTCGTTTCATGGGTCAATTATAAAGTTT
7479121 GATTCAA
1 GATTCAA
7479128 ACACGTATTG
Statistics
Matches: 68, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
61 39 0.57
63 5 0.07
64 16 0.24
65 1 0.01
66 7 0.10
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (65 bp):
GATTCAAGTGATTACCTTTTAATCAGTTTTCGTGGCTTTCGTTTCATGGGTCAATTATAAAGTTT
Found at i:7480402 original size:23 final size:23
Alignment explanation
Indices: 7480376--7480466 Score: 100
Period size: 23 Copynumber: 4.1 Consensus size: 23
7480366 TGAAAAGTTA
7480376 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAATAT
*
7480399 GAAGAGTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAATAT
* * * * *
7480422 GAAAAGT-TACACAC---ATTAT
1 GAAGAGTGAAGAGACTTGAATAT
7480441 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAATAT
7480464 GAA
1 GAA
7480467 AGGTTACACA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 9 0.17
20 4 0.08
22 4 0.08
23 35 0.67
ACGTcount: A:0.45, C:0.07, G:0.27, T:0.21
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAATAT
Found at i:7480443 original size:42 final size:42
Alignment explanation
Indices: 7480396--7480479 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
7480386 GAGACTTGAA
7480396 TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
1 TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
* *
7480438 TATGAAGAGTGAAGAGACTTGAATATGAAAGGTTACACACAT
1 TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
7480480 GCATGAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.23
Consensus pattern (42 bp):
TATGAAGAGTGAAGAGACTTGAAGATGAAAAGTTACACACAT
Found at i:7492088 original size:33 final size:33
Alignment explanation
Indices: 7492013--7492088 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
7492003 AGTTTGTCAA
* * * *
7492013 ATATCAATATTATTTTATTATTTTTATCTTTTC
1 ATATCATTAATATTTTATTATTTTTATCTATAC
7492046 ATATCATTAATATTTTATTATTATTTATCTATAC
1 ATATCATTAATATTTTATTATT-TTTATCTATAC
*
7492080 -TATTATTAA
1 ATATCATTAA
7492089 ACCTTTCACA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (33 bp):
ATATCATTAATATTTTATTATTTTTATCTATAC
Found at i:7495646 original size:9 final size:9
Alignment explanation
Indices: 7495632--7495659 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7495622 TAAGTTTTCG
7495632 AATTCGAAT
1 AATTCGAAT
7495641 AATTCGAAT
1 AATTCGAAT
7495650 AATTCGAAT
1 AATTCGAAT
7495659 A
1 A
7495660 TTAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7496021 original size:17 final size:16
Alignment explanation
Indices: 7495987--7496017 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7495977 ACTATTTACT
*
7495987 TTCCCTCAAACTTTTA
1 TTCCCCCAAACTTTTA
7496003 TTCCCCCAAACTTTT
1 TTCCCCCAAACTTTT
7496018 TATTTTTCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (16 bp):
TTCCCCCAAACTTTTA
Found at i:7500684 original size:21 final size:21
Alignment explanation
Indices: 7500658--7500699 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7500648 TTAGCTCAGA
7500658 CGGGTAACCTGATATATTTAT
1 CGGGTAACCTGATATATTTAT
*
7500679 CGGGTAACCTGATGTATTTAT
1 CGGGTAACCTGATATATTTAT
7500700 ACTCTTCTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (21 bp):
CGGGTAACCTGATATATTTAT
Found at i:7502175 original size:160 final size:160
Alignment explanation
Indices: 7501911--7502390 Score: 924
Period size: 160 Copynumber: 3.0 Consensus size: 160
7501901 ATGGACACCA
*
7501911 TAGAAGGATTTATCAAAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
1 TAGAAGGATTTATCAGAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
* *
7501976 TATCAAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAAAGAGTAATTGAAGGGAACTAT
66 TATCGAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAGAGAGTAATTGAAGGGAACTAT
7502041 TTATGATAGTAAGTGCTAAAAAAGAGTGGG
131 TTATGATAGTAAGTGCTAAAAAAGAGTGGG
7502071 TAGAAGGATTTATCAGAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
1 TAGAAGGATTTATCAGAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
7502136 TATCGAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAGAGAGTAATTGAAGGGAACTAT
66 TATCGAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAGAGAGTAATTGAAGGGAACTAT
7502201 TTATGATAGTAAGTGCTAAAAAAGAGTGGG
131 TTATGATAGTAAGTGCTAAAAAAGAGTGGG
7502231 TAGAAGGATTTATCAGAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
1 TAGAAGGATTTATCAGAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
7502296 TATCGAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAGAGAGTAATTGAAGGGAACTAT
66 TATCGAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAGAGAGTAATTGAAGGGAACTAT
*
7502361 TTATGATAGCAAGTGCTAAAAAAGAGTGGG
131 TTATGATAGTAAGTGCTAAAAAAGAGTGGG
7502391 ATACCTTGAA
Statistics
Matches: 316, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 316 1.00
ACGTcount: A:0.46, C:0.08, G:0.25, T:0.22
Consensus pattern (160 bp):
TAGAAGGATTTATCAGAAAAGGCTTACTAGGATAACTTGTAAAGAGGAAACCTAGATAGTAAGAA
TATCGAGAAGAAAAGATATCCAAGAGAAGAGAGACAAGTTATAGAGAGTAATTGAAGGGAACTAT
TTATGATAGTAAGTGCTAAAAAAGAGTGGG
Found at i:7503379 original size:29 final size:29
Alignment explanation
Indices: 7503337--7503395 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
7503327 TGTCCTAGAG
*
7503337 ATTGGTTTGGATTTGGATCAAAGGCATCA
1 ATTGGTTTGGATTTGGATCAAAGACATCA
*
7503366 ATTGGTTTGGATTTGGTTCAAAGACATCA
1 ATTGGTTTGGATTTGGATCAAAGACATCA
7503395 A
1 A
7503396 CTTCTCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (29 bp):
ATTGGTTTGGATTTGGATCAAAGACATCA
Found at i:7517748 original size:23 final size:23
Alignment explanation
Indices: 7517721--7517796 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
7517711 AGTGTTATTG
7517721 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7517744 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7517767 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7517790 ATCAGTG
1 ATCAGTG
7517797 TTGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7522672 original size:21 final size:19
Alignment explanation
Indices: 7522629--7522673 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
7522619 ACATCGTTTT
* *
7522629 CAGAAGCTCGAAGGCTGAA
1 CAGAAGCTCGAAAGCTAAA
7522648 CAGAAGCTCATGAAAGCTAAA
1 CAGAAGCTC--GAAAGCTAAA
7522669 CAGAA
1 CAGAA
7522674 TACCATCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
21 13 0.59
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (19 bp):
CAGAAGCTCGAAAGCTAAA
Found at i:7522903 original size:101 final size:101
Alignment explanation
Indices: 7522715--7522954 Score: 354
Period size: 101 Copynumber: 2.4 Consensus size: 101
7522705 AATTCATCCT
* * * *
7522715 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCACAGCCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCACAGCCCAACTATAGT
* * * **
7522780 CTTACGTATAAACATTGTCATGGTTCAACCATGGTC
66 CTTACATATAAACACTGCCATGGGCCAACCATGGTC
* *
7522816 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCCAACTATAGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCACAGCCCAACTATAGT
*
7522881 CTTACATATAAACACTGCCATGGGCCAACCTTGGTC
66 CTTACATATAAACACTGCCATGGGCCAACCATGGTC
* *
7522917 TTACGTTCATAGTGCCATAACCCAGCTATGGTTTTATC
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATC
7522955 CGTCAATTCA
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 125 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (101 bp):
TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCACAGCCCAACTATAGT
CTTACATATAAACACTGCCATGGGCCAACCATGGTC
Found at i:7524922 original size:11 final size:11
Alignment explanation
Indices: 7524869--7524926 Score: 62
Period size: 11 Copynumber: 5.1 Consensus size: 11
7524859 TTTTATACTA
7524869 AATAAAATAAT
1 AATAAAATAAT
*
7524880 AACAAAATAAT
1 AATAAAATAAT
*
7524891 AATAAAATATCTT
1 AATAAAATA--AT
* *
7524904 ATTAAAATATT
1 AATAAAATAAT
7524915 AATAAAATAAT
1 AATAAAATAAT
7524926 A
1 A
7524927 TTTATCTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 30 0.77
13 9 0.23
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:7526331 original size:44 final size:44
Alignment explanation
Indices: 7526279--7526422 Score: 252
Period size: 44 Copynumber: 3.3 Consensus size: 44
7526269 TTTTAATTTT
*
7526279 TATTATTAAATGAGATAATTAATTTAGCGTGGATATCTTTTCAA
1 TATTATTAAATGAGATAATTAATTTAGCGTGAATATCTTTTCAA
*
7526323 TACTATTAAATGAGATAATTAATTTAGCGTGAATATCTTTTCAA
1 TATTATTAAATGAGATAATTAATTTAGCGTGAATATCTTTTCAA
* *
7526367 TATTATTAAATGAGATAATTAATTTAGTGTAAATATCTTTTCAA
1 TATTATTAAATGAGATAATTAATTTAGCGTGAATATCTTTTCAA
7526411 TATTATTAAATG
1 TATTATTAAATG
7526423 GGTTGTATGA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 95 1.00
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (44 bp):
TATTATTAAATGAGATAATTAATTTAGCGTGAATATCTTTTCAA
Found at i:7526421 original size:21 final size:21
Alignment explanation
Indices: 7526354--7526421 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
7526344 ATTTAGCGTG
7526354 AATATCTTTTCAATATTATTA
1 AATATCTTTTCAATATTATTA
** *
7526375 AATGAGATAATT-AAT-TTAGTGTA
1 AAT-ATCT-TTTCAATATTA-T-TA
7526398 AATATCTTTTCAATATTATTA
1 AATATCTTTTCAATATTATTA
7526419 AAT
1 AAT
7526422 GGGTTGTATG
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
21 13 0.37
22 12 0.34
23 10 0.29
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (21 bp):
AATATCTTTTCAATATTATTA
Found at i:7527605 original size:12 final size:12
Alignment explanation
Indices: 7527588--7527612 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7527578 ATTTAGTGTT
7527588 AAAAGAAGAAGA
1 AAAAGAAGAAGA
7527600 AAAAGAAGAAGA
1 AAAAGAAGAAGA
7527612 A
1 A
7527613 GCAGCGGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAGA
Found at i:7528235 original size:25 final size:25
Alignment explanation
Indices: 7528201--7528256 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
7528191 TGCCACCTTA
7528201 AATTAAAACTTTCGAATAATTCGAT
1 AATTAAAACTTTCGAATAATTCGAT
7528226 AATTAAAACTTTCGAATAATTCGAT
1 AATTAAAACTTTCGAATAATTCGAT
7528251 AATTAA
1 AATTAA
7528257 TGGTACGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (25 bp):
AATTAAAACTTTCGAATAATTCGAT
Found at i:7532635 original size:87 final size:90
Alignment explanation
Indices: 7532532--7532757 Score: 253
Period size: 87 Copynumber: 2.5 Consensus size: 90
7532522 AGCCTTTATA
* * * * *
7532532 TTTTTTGCACTTAATTGAGTACTTAAACTTTCAAAATGCATCGAAAAGCCCCT-TAAACTTTTCA
1 TTTTTTGCACTCAATTGAGTACTTAAACTTTCAAAATGTATCAAAAAGACCCTCAAAACTTTTCA
*
7532596 A-AATAAGCAATGATG-CCC-CTATT
66 ATAA-AAGCAATGAAGCCCCGCTATT
* * * *
7532619 TTTTTTGCACTCAATTGCGTACTTAAATTTTCAAAATATATCAAAAAGACCCTCAAAATTTTTCA
1 TTTTTTGCACTCAATTGAGTACTTAAACTTTCAAAATGTATCAAAAAGACCCTCAAAACTTTTCA
* *
7532684 ATAAAAGCAATTAAGCCCCTGCTTTT
66 ATAAAAGCAATGAAGCCCC-GCTATT
* * * * *
7532710 TTTTTTACACTCGATTGGGTACTTGAACTGTCAAAATGTATCAAAAAG
1 TTTTTTGCACTCAATTGAGTACTTAAACTTTCAAAATGTATCAAAAAG
7532758 GCATTTTGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
87 46 0.40
88 19 0.17
89 5 0.04
91 45 0.39
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (90 bp):
TTTTTTGCACTCAATTGAGTACTTAAACTTTCAAAATGTATCAAAAAGACCCTCAAAACTTTTCA
ATAAAAGCAATGAAGCCCCGCTATT
Found at i:7532933 original size:19 final size:19
Alignment explanation
Indices: 7532911--7532969 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
7532901 ATTATTAAAT
7532911 TTTAATAAAAATGTAAAAA
1 TTTAATAAAAATGTAAAAA
*
7532930 TTTATTAAAAAT-TAGAAAA
1 TTTAATAAAAATGTA-AAAA
7532949 TAATT-ATAAAAATTGTAAAAA
1 T--TTAATAAAAA-TGTAAAAA
7532970 AAATTATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 2 0.06
19 16 0.48
20 6 0.18
21 7 0.21
22 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
TTTAATAAAAATGTAAAAA
Found at i:7532948 original size:20 final size:20
Alignment explanation
Indices: 7532915--7532981 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
7532905 TTAAATTTTA
7532915 ATAAAAATGTA-AAAAT--TT
1 ATAAAAAT-TAGAAAATAATT
7532933 ATTAAAAATTAGAAAATAATT
1 A-TAAAAATTAGAAAATAATT
*
7532954 ATAAAAATT-GTAAAAAAAATT
1 ATAAAAATTAG--AAAATAATT
7532975 ATAAAAA
1 ATAAAAA
7532982 ATTGTAAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
18 3 0.07
19 13 0.31
20 8 0.19
21 18 0.43
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (20 bp):
ATAAAAATTAGAAAATAATT
Found at i:7532960 original size:21 final size:20
Alignment explanation
Indices: 7532925--7532998 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 20
7532915 ATAAAAATGT
* *
7532925 AAAAATTTATTAAAAATTAGA
1 AAAAAATTATAAAAAATTA-A
* *
7532946 AAATAATTATAAAAATTGTAA
1 AAAAAATTATAAAAAAT-TAA
*
7532967 AAAAAATTATAAAAAATTGTA
1 AAAAAATTATAAAAAATT-AA
7532988 AAAAAA-TATAA
1 AAAAAATTATAA
7532999 TATATATAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
20 6 0.14
21 36 0.82
22 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (20 bp):
AAAAAATTATAAAAAATTAA
Found at i:7532971 original size:12 final size:12
Alignment explanation
Indices: 7532956--7532993 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
7532946 AAATAATTAT
7532956 AAAAATTGTAAA
1 AAAAATTGTAAA
*
7532968 AAAAA-T-TATA
1 AAAAATTGTAAA
7532978 AAAAATTGTAAA
1 AAAAATTGTAAA
7532990 AAAA
1 AAAA
7532994 TATAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.36
11 2 0.09
12 12 0.55
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (12 bp):
AAAAATTGTAAA
Found at i:7532980 original size:10 final size:10
Alignment explanation
Indices: 7532859--7533074 Score: 94
Period size: 10 Copynumber: 22.1 Consensus size: 10
7532849 TGACATGTTG
*
7532859 TAAAAAATGA
1 TAAAAAATTA
7532869 TAAAAAA--A
1 TAAAAAATTA
*
7532877 T-AAAAATCA
1 TAAAAAATTA
7532886 -ATAAAAATTA
1 TA-AAAAATTA
7532896 -AAAAAATTA
1 TAAAAAATTA
* *
7532905 T--TAAATTT
1 TAAAAAATTA
* *
7532913 TAATAAAAATG
1 TAA-AAAATTA
*
7532924 TAAAAATTTA
1 TAAAAAATTA
*
7532934 TTAAAAATTA
1 TAAAAAATTA
*
7532944 GAAAATAATTA
1 TAAAA-AATTA
*
7532955 TAAAAATTGTA
1 TAAAAAAT-TA
*
7532966 AAAAAAATTA
1 TAAAAAATTA
*
7532976 TAAAAAATTG
1 TAAAAAATTA
*
7532986 TAAAAAAATA
1 TAAAAAATTA
* *
7532996 TAATATA-TA
1 TAAAAAATTA
*
7533005 T-AGAAATATA
1 TAAAAAAT-TA
*
7533015 GAAAAAATTA
1 TAAAAAATTA
*
7533025 T--AAAATTT
1 TAAAAAATTA
* * *
7533033 TATAAAGTCA
1 TAAAAAATTA
7533043 TAAGAAAATTA
1 TAA-AAAATTA
* *
7533054 TAAAAAAATG
1 TAAAAAATTA
7533064 TAAAAAATTA
1 TAAAAAATTA
7533074 T
1 T
7533075 CAAATTCGTA
Statistics
Matches: 151, Mismatches: 39, Indels: 32
0.68 0.18 0.14
Matches are distributed among these distances:
7 5 0.03
8 18 0.12
9 12 0.08
10 79 0.52
11 37 0.25
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:7532985 original size:22 final size:21
Alignment explanation
Indices: 7532945--7532993 Score: 80
Period size: 22 Copynumber: 2.3 Consensus size: 21
7532935 TAAAAATTAG
*
7532945 AAAATAATTATAAAAATTGTA
1 AAAAAAATTATAAAAATTGTA
7532966 AAAAAAATTATAAAAAATTGTA
1 AAAAAAATTAT-AAAAATTGTA
7532988 AAAAAA
1 AAAAAA
7532994 TATAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAAAAATTATAAAAATTGTA
Found at i:7533085 original size:19 final size:19
Alignment explanation
Indices: 7533063--7533099 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7533053 ATAAAAAAAT
*
7533063 GTAAAAAATTATCAAATTC
1 GTAAAAAATTATAAAATTC
*
7533082 GTAAAAGATTATAAAATT
1 GTAAAAAATTATAAAATT
7533100 TATCGTACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.32
Consensus pattern (19 bp):
GTAAAAAATTATAAAATTC
Found at i:7533325 original size:9 final size:9
Alignment explanation
Indices: 7533283--7533332 Score: 57
Period size: 10 Copynumber: 5.4 Consensus size: 9
7533273 GCATTTTATA
7533283 TTTTAT-AT
1 TTTTATAAT
7533291 TTTTATAAT
1 TTTTATAAT
*
7533300 ATTTTAAAAT
1 -TTTTATAAT
*
7533310 ATTTTATGAT
1 -TTTTATAAT
7533320 TTTTATAAT
1 TTTTATAAT
7533329 TTTT
1 TTTT
7533333 TCTATTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 6 0.17
9 14 0.39
10 16 0.44
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:7535594 original size:23 final size:23
Alignment explanation
Indices: 7535530--7535617 Score: 92
Period size: 23 Copynumber: 4.0 Consensus size: 23
7535520 CCTGATCAAT
*
7535530 ATACGACTCAT-AAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
* ** *
7535551 A-ACGACGCACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
* *
7535573 ATACGACACATAAAGTGTCTGAT
1 ATACGACACATAAAGTGCCTGAA
7535596 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
7535618 TCGGCAAAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
20 7 0.13
21 8 0.15
22 3 0.06
23 36 0.67
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:7535971 original size:26 final size:25
Alignment explanation
Indices: 7535940--7535989 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
7535930 TAGTTCAATA
7535940 ATTCAATTCAA-ACCATTTCAATTTCT
1 ATTCAATT-AACA-CATTTCAATTTCT
*
7535966 ATTCAATTATCACATTTCAATTTC
1 ATTCAATTAACACATTTCAATTTC
7535990 ACTTTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.34, C:0.22, G:0.00, T:0.44
Consensus pattern (25 bp):
ATTCAATTAACACATTTCAATTTCT
Found at i:7536923 original size:3 final size:3
Alignment explanation
Indices: 7536909--7536940 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7536899 ATTAGTTAAC
*
7536909 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7536941 ATATCTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7550369 original size:16 final size:17
Alignment explanation
Indices: 7550339--7550378 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
7550329 ATAATTATCT
*
7550339 AAAAAACTTAACTCAGTA
1 AAAAAACTT-ACTCAATA
7550357 AAAAAACTT-CTCAATA
1 AAAAAACTTACTCAATA
7550373 AAAAAA
1 AAAAAA
7550379 TATGTGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.57
18 9 0.43
ACGTcount: A:0.62, C:0.15, G:0.03, T:0.20
Consensus pattern (17 bp):
AAAAAACTTACTCAATA
Found at i:7552911 original size:41 final size:44
Alignment explanation
Indices: 7552864--7552972 Score: 138
Period size: 42 Copynumber: 2.6 Consensus size: 44
7552854 TAGTTCAACT
* *
7552864 TGGGTCTTACACA-CTTCACATAAT-GA-TGTCATAGCCCAGCTA
1 TGGGTCTTACACATATTCACAT-ATCGAGTGCCATAGCCCAGCTA
7552906 T-GGTC-TACACATATTCACATATCGAGTGCCATAGCCCAGCTA
1 TGGGTCTTACACATATTCACATATCGAGTGCCATAGCCCAGCTA
* *
7552948 TGGGTCTTACACGTAATCACATATC
1 TGGGTCTTACACATATTCACATATC
7552973 ACATATCGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
40 8 0.14
41 13 0.22
42 17 0.29
43 4 0.07
44 16 0.28
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (44 bp):
TGGGTCTTACACATATTCACATATCGAGTGCCATAGCCCAGCTA
Found at i:7571595 original size:31 final size:31
Alignment explanation
Indices: 7571557--7571625 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
7571547 CCTTAACCAT
*
7571557 ATTAAATTACCACAATAGTTAGTACATCCCA
1 ATTAAATTACCACAATAGTTAGTACATCACA
* * *
7571588 ATTAAATTACCATATTAGTTAGTATATCACA
1 ATTAAATTACCACAATAGTTAGTACATCACA
7571619 ATTAAAT
1 ATTAAAT
7571626 AAAAAATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (31 bp):
ATTAAATTACCACAATAGTTAGTACATCACA
Found at i:7572568 original size:26 final size:27
Alignment explanation
Indices: 7572519--7572578 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 27
7572509 AAAAATAACT
7572519 AAAATATTATAACTTTTTTTATTTACC
1 AAAATATTATAACTTTTTTTATTTACC
7572546 AAAATATTATAA-TTTTTTTATTTACC
1 AAAATATTATAACTTTTTTTATTTACC
7572572 AAAATAT
1 AAAATAT
7572579 ACCAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (27 bp):
AAAATATTATAACTTTTTTTATTTACC
Found at i:7572744 original size:4 final size:4
Alignment explanation
Indices: 7572735--7572870 Score: 54
Period size: 4 Copynumber: 33.0 Consensus size: 4
7572725 GAAGGAGAGG
* * *
7572735 GAAA GAAA GAAA GAAA GAAA GGAAG GAGAG GAAA GAAA GACAAA GAAG
1 GAAA GAAA GAAA GAAA GAAA -GAAA GA-AA GAAA GAAA G--AAA GAAA
*
7572783 GAAA GAAAA GGAAA G-GA GAAGA GTAAA -AAA -AAA GAAA G-AA G-AA
1 GAAA G-AAA -GAAA GAAA GAA-A G-AAA GAAA GAAA GAAA GAAA GAAA
* *
7572826 GAAGA GGAAA GGAGAG GAAA -AAA GAAA G-AA -AAA GAAG GAAA GAAA
1 GAA-A -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
7572871 AGGAAAGGAG
Statistics
Matches: 105, Mismatches: 10, Indels: 34
0.70 0.07 0.23
Matches are distributed among these distances:
3 21 0.20
4 50 0.48
5 23 0.22
6 11 0.10
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:7572770 original size:18 final size:18
Alignment explanation
Indices: 7572747--7572801 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
7572737 AAGAAAGAAA
7572747 GAAAGAAAGGAAGGAGAG
1 GAAAGAAAGGAAGGAGAG
* *
7572765 GAAAGAAAGACAAAGA-AG
1 GAAAGAAAG-GAAGGAGAG
7572783 GAAAGAAAAGGAAAGGAGA
1 GAAAG-AAAGG-AAGGAGA
7572802 AGAGTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 16 0.55
19 12 0.41
20 1 0.03
ACGTcount: A:0.62, C:0.02, G:0.36, T:0.00
Consensus pattern (18 bp):
GAAAGAAAGGAAGGAGAG
Found at i:7572781 original size:36 final size:37
Alignment explanation
Indices: 7572735--7572881 Score: 142
Period size: 39 Copynumber: 3.9 Consensus size: 37
7572725 GAAGGAGAGG
7572735 GAAAG-AAAGAAAGAAAG-AAAGG-AAGGAGAGGAAA
1 GAAAGAAAAGAAAGAAAGAAAAGGAAAGGAGAGGAAA
* *
7572769 GAAAGACAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGTAA
1 GAAAGA-AAAGAAAGAAAGAAAAGGAAAGGAG-AG-GAAA
*
7572809 -AAA-AAAAGAAAGAAGAAGAAGAGGAAAGGAGAGGAAAAAA
1 GAAAGAAAAGAAAG-A-AAGAAAAGGAAAGGAGAGG---AAA
*
7572849 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGA
1 GAAAG-AAAAGAAAGAAAGAAAAGGAAAGGAGA
7572882 AGAGGGAAAA
Statistics
Matches: 92, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
34 5 0.05
36 11 0.12
37 13 0.14
38 10 0.11
39 20 0.22
40 5 0.05
41 19 0.21
42 1 0.01
43 8 0.09
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.01
Consensus pattern (37 bp):
GAAAGAAAAGAAAGAAAGAAAAGGAAAGGAGAGGAAA
Found at i:7572820 original size:33 final size:36
Alignment explanation
Indices: 7572725--7572867 Score: 113
Period size: 36 Copynumber: 4.0 Consensus size: 36
7572715 TGGGGGCGGA
* *
7572725 GAAGGAGAGGGAAAGAAAGAAAGAAAGAAAGGAAGGAGAG
1 GAAGAAGA-GGAAA-AAAGAAAGAAAG-AA-GAAGGAAAG
* *
7572765 GAAAGAA-A-G-ACAAAGAAGGAAAGAA-AAGGAAAG
1 G-AAGAAGAGGAAAAAAGAAAGAAAGAAGAAGGAAAG
*
7572798 G-AGAAGAGTAAAAAA-AAAGAAAGAAGAA-GAAGAG
1 GAAGAAGAGGAAAAAAGAAAGAAAGAAGAAGGAA-AG
*
7572832 GAAAGGAGAGGAAAAAAGAAAGAAA-AAGAAGGAAAG
1 G-AAGAAGAGGAAAAAAGAAAGAAAGAAGAAGGAAAG
7572868 AAAAGGAAAG
Statistics
Matches: 84, Mismatches: 9, Indels: 24
0.72 0.08 0.21
Matches are distributed among these distances:
31 4 0.05
32 1 0.01
33 20 0.24
34 9 0.11
35 2 0.02
36 30 0.36
37 11 0.13
38 1 0.01
40 2 0.02
41 4 0.05
ACGTcount: A:0.64, C:0.01, G:0.34, T:0.01
Consensus pattern (36 bp):
GAAGAAGAGGAAAAAAGAAAGAAAGAAGAAGGAAAG
Found at i:7572825 original size:44 final size:43
Alignment explanation
Indices: 7572777--7572915 Score: 152
Period size: 44 Copynumber: 3.3 Consensus size: 43
7572767 AAGAAAGACA
7572777 AAGAAGGAAAGAAAAGGAAAGGAGAAGAGTAAAAAAAAAGAAAG
1 AAGAAGGAAAGAAAAGGAAAGGAGAAGAG-AAAAAAAAAGAAAG
7572821 AAGAA-G-AAG---AGGAAAGGAG-AG-GAAAAAAGAAAGAAA-
1 AAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA-AAAGAAAG
*
7572857 AAGAAGGAAAGAAAAGGAAAGGAGAAGAGGGAAAAAAAAG-AAG
1 AAGAAGGAAAGAAAAGGAAAGGAGAAGA-GAAAAAAAAAGAAAG
* *
7572900 AGGGAAGGAAGGAAAA
1 A-AGAAGGAAAGAAAA
7572916 AAAAGAAAAA
Statistics
Matches: 81, Mismatches: 3, Indels: 22
0.76 0.03 0.21
Matches are distributed among these distances:
36 11 0.14
37 9 0.11
38 5 0.06
39 10 0.12
41 10 0.12
42 7 0.09
43 6 0.07
44 23 0.28
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (43 bp):
AAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAGAAAG
Found at i:7572863 original size:80 final size:77
Alignment explanation
Indices: 7572736--7572898 Score: 240
Period size: 80 Copynumber: 2.1 Consensus size: 77
7572726 AAGGAGAGGG
*
7572736 AAAGAAAGAAAGAAAGAAAGGAAGGAGAGGAAAGAAAGACAAAGAAGGAAAGAAAAGGAAAGGAG
1 AAAGAAAGAAAGAAAGAAAGGAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAG
*
7572801 AAGAGTAAAAAA
66 AAGAGGAAAAAA
7572813 AAAGAAAG-AAG-AAGAAGAGGAAAGGAGAGGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAA
1 AAAGAAAGAAAGAAAGAA-AGG-AAGGAGAGG---AAAGAAAGAAAAAGAAGGAAAGAAAAGGAA
*
7572876 AGGAGAAGAGGGAAAAA
61 AGGAGAAGAGGAAAAAA
7572893 AAAGAA
1 AAAGAA
7572899 GAGGGAAGGA
Statistics
Matches: 78, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
75 5 0.06
76 6 0.08
77 17 0.22
80 50 0.64
ACGTcount: A:0.67, C:0.01, G:0.32, T:0.01
Consensus pattern (77 bp):
AAAGAAAGAAAGAAAGAAAGGAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAG
AAGAGGAAAAAA
Found at i:7572871 original size:24 final size:23
Alignment explanation
Indices: 7572843--7572929 Score: 86
Period size: 24 Copynumber: 3.7 Consensus size: 23
7572833 AAAGGAGAGG
7572843 AAAAAAGAAAGAAAAAGAAGGAA
1 AAAAAAGAAAGAAAAAGAAGGAA
* * * *
7572866 AGAAAAGGAAAGGAGAAGAGGGAA
1 A-AAAAAGAAAGAAAAAGAAGGAA
** *
7572890 AAAAAAGAAGAGGGAAGGAAGGAA
1 AAAAAAGAA-AGAAAAAGAAGGAA
7572914 AAAAAAGAAA-AAAAAG
1 AAAAAAGAAAGAAAAAG
7572930 GTAATTTTTA
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
22 3 0.06
23 9 0.18
24 38 0.76
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAAGAAAAAGAAGGAA
Found at i:7572929 original size:80 final size:80
Alignment explanation
Indices: 7572766--7572927 Score: 220
Period size: 80 Copynumber: 2.0 Consensus size: 80
7572756 GAAGGAGAGG
* *
7572766 AAAGAAAGACAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGTAAAAAAAAAGAAAGAAGAAGAAGA
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGGAAAAAAAAAGAAAGAAGAAGAAGA
** * *
7572831 GGAAAGGAGAGGAAA
66 GGAAAAAAAAGAAAA
* * *
7572846 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGGGAAAAAAAAG-AAGAGGGAAGGA-
1 AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGGAAAAAAAAAGAAAGA-AGAAGAAG
7572909 AGGAAAAAAAAGAAAA
65 AGGAAAAAAAAGAAAA
7572925 AAA
1 AAA
7572928 AGGTAATTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
79 19 0.26
80 53 0.74
ACGTcount: A:0.68, C:0.01, G:0.31, T:0.01
Consensus pattern (80 bp):
AAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGGAAAAAAAAAGAAAGAAGAAGAAGA
GGAAAAAAAAGAAAA
Found at i:7573678 original size:27 final size:27
Alignment explanation
Indices: 7573648--7573703 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
7573638 AAAGAGGGTG
*
7573648 ATGGAGGGGAATAAAAAGGCGGCACCA
1 ATGGAGAGGAATAAAAAGGCGGCACCA
7573675 ATGGAGAGGAATAAAAAGGCGGCACCA
1 ATGGAGAGGAATAAAAAGGCGGCACCA
7573702 AT
1 AT
7573704 ATGTGGCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.34, T:0.09
Consensus pattern (27 bp):
ATGGAGAGGAATAAAAAGGCGGCACCA
Found at i:7573989 original size:16 final size:15
Alignment explanation
Indices: 7573963--7573992 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7573953 GTACTGAAAT
7573963 AATATAAAATAATAA
1 AATATAAAATAATAA
7573978 AATATGAAAATAATA
1 AATAT-AAAATAATA
7573993 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:7576457 original size:11 final size:11
Alignment explanation
Indices: 7576441--7576467 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7576431 TTTATAACTT
7576441 AATTTGGATAC
1 AATTTGGATAC
7576452 AATTTGGATAC
1 AATTTGGATAC
7576463 AATTT
1 AATTT
7576468 AAGCATAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (11 bp):
AATTTGGATAC
Found at i:7578736 original size:18 final size:18
Alignment explanation
Indices: 7578713--7578757 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
7578703 ATCCCAATGA
* *
7578713 TCGCCACCTCTTTCTTCT
1 TCGCCACCACATTCTTCT
7578731 TCGCCACCACATTCTTCT
1 TCGCCACCACATTCTTCT
*
7578749 TCACCACCA
1 TCGCCACCA
7578758 ACCATATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.47, G:0.04, T:0.33
Consensus pattern (18 bp):
TCGCCACCACATTCTTCT
Found at i:7579557 original size:3 final size:3
Alignment explanation
Indices: 7579549--7579658 Score: 211
Period size: 3 Copynumber: 36.7 Consensus size: 3
7579539 GCTTAATACT
7579549 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
*
7579597 AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
7579645 AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AA
7579659 TAATAATAAT
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 105 1.00
ACGTcount: A:0.67, C:0.32, G:0.00, T:0.01
Consensus pattern (3 bp):
AAC
Found at i:7579676 original size:15 final size:16
Alignment explanation
Indices: 7579658--7579687 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7579648 AACAACAACA
7579658 ATAATAATAA-TAAAC
1 ATAATAATAACTAAAC
7579673 ATAATAATAACTAAA
1 ATAATAATAACTAAA
7579688 ACTATCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAATAATAACTAAAC
Found at i:7579847 original size:3 final size:3
Alignment explanation
Indices: 7579839--7579864 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7579829 AGCACCTCTA
7579839 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
7579865 GATTTTTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:7579951 original size:27 final size:26
Alignment explanation
Indices: 7579913--7580006 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
7579903 AACACGAGTA
*
7579913 GTGCCGTCAATCAGTATGGCACCATTG
1 GTGCCGCCAATCAGT-TGGCACCATTG
**
7579940 GTGCCGCCAATCTCCTTGGCACCATTG
1 GTGCCGCCAATC-AGTTGGCACCATTG
* *
7579967 GTGCCGCCAATGGC-TTTGGCACCTTTG
1 GTGCCGCCAAT--CAGTTGGCACCATTG
7579994 GTGCCGCCAATCA
1 GTGCCGCCAATCA
7580007 CCTTGGCCTG
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
25 1 0.02
27 55 0.95
28 1 0.02
29 1 0.02
ACGTcount: A:0.17, C:0.32, G:0.26, T:0.26
Consensus pattern (26 bp):
GTGCCGCCAATCAGTTGGCACCATTG
Found at i:7580012 original size:27 final size:27
Alignment explanation
Indices: 7579929--7580013 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
7579919 TCAATCAGTA
*
7579929 TGGCACCATTGGTGCCGCCAATCTCCT
1 TGGCACCATTGGTGCCGCCAATCACCT
** *
7579956 TGGCACCATTGGTGCCGCCAATGGCTT
1 TGGCACCATTGGTGCCGCCAATCACCT
*
7579983 TGGCACCTTTGGTGCCGCCAATCACCT
1 TGGCACCATTGGTGCCGCCAATCACCT
7580010 TGGC
1 TGGC
7580014 CTGACCAGGG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.14, C:0.34, G:0.26, T:0.26
Consensus pattern (27 bp):
TGGCACCATTGGTGCCGCCAATCACCT
Found at i:7594331 original size:21 final size:22
Alignment explanation
Indices: 7594302--7594348 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7594292 CAGAAGGAGT
*
7594302 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
7594324 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
7594345 GAGT
1 GAGT
7594349 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:7597795 original size:31 final size:29
Alignment explanation
Indices: 7597760--7597829 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
7597750 ATACTAAAAT
*
7597760 TATACATGAACTATGGTTTAATGTGCAATTG
1 TATACATGAACTATGATTT--TGTGCAATTG
* * *
7597791 TATACATGAACTTTGATTTTGTTCAATTT
1 TATACATGAACTATGATTTTGTGCAATTG
7597820 TATACATGAA
1 TATACATGAA
7597830 ATTTTGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.51
31 17 0.49
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (29 bp):
TATACATGAACTATGATTTTGTGCAATTG
Found at i:7597826 original size:29 final size:30
Alignment explanation
Indices: 7597759--7597839 Score: 92
Period size: 31 Copynumber: 2.7 Consensus size: 30
7597749 AATACTAAAA
* *
7597759 TTATACATGAACTATGGTTTAATGTGCAATT
1 TTATACATGAACTTTGATTT-ATGTGCAATT
* *
7597790 GTATACATGAACTTTGATTT-TGTTCAATT
1 TTATACATGAACTTTGATTTATGTGCAATT
*
7597819 TTATACATGAAATTTTGATTT
1 TTATACATG-AACTTTGATTT
7597840 GATCCAGTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
29 16 0.37
30 10 0.23
31 17 0.40
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.47
Consensus pattern (30 bp):
TTATACATGAACTTTGATTTATGTGCAATT
Found at i:7598095 original size:29 final size:27
Alignment explanation
Indices: 7598029--7598095 Score: 62
Period size: 31 Copynumber: 2.3 Consensus size: 27
7598019 TAGTTTCACG
*
7598029 TGTATAATTGCATCAAATTAAAGTTAA
1 TGTATAATTGCATCAAATCAAAGTTAA
* * *
7598056 TATATACAATTGCACATTAAATCAAAGTTCA
1 TGTAT--AATTG--CATCAAATCAAAGTTAA
7598087 TGTATAATT
1 TGTATAATT
7598096 TTGAGATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 4 0.13
29 9 0.29
31 18 0.58
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.37
Consensus pattern (27 bp):
TGTATAATTGCATCAAATCAAAGTTAA
Found at i:7600840 original size:20 final size:20
Alignment explanation
Indices: 7600815--7600859 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7600805 TCCTATATTG
* *
7600815 ATACAAGTTCACTTTTATCC
1 ATACAAGTTCACTTCTACCC
7600835 ATACAAGTTCACTTCTACCC
1 ATACAAGTTCACTTCTACCC
7600855 ATACA
1 ATACA
7600860 TCTTGTGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.33
Consensus pattern (20 bp):
ATACAAGTTCACTTCTACCC
Found at i:7608747 original size:18 final size:19
Alignment explanation
Indices: 7608724--7608772 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
7608714 TCACATGCGC
7608724 ATTTTTTTATAATTTTC-T
1 ATTTTTTTATAATTTTCAT
**
7608742 ATTTTTTT-TCCTTTTCAT
1 ATTTTTTTATAATTTTCAT
7608760 ATTTTTTTTATAA
1 A-TTTTTTTATAA
7608773 AACATATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 6 0.25
18 10 0.42
19 7 0.29
20 1 0.04
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTTTTTATAATTTTCAT
Found at i:7608959 original size:8 final size:8
Alignment explanation
Indices: 7608948--7608973 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7608938 ATACATATGC
7608948 ATACTTTT
1 ATACTTTT
7608956 ATACTTTT
1 ATACTTTT
7608964 ATACTTTT
1 ATACTTTT
7608972 AT
1 AT
7608974 TTTTAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (8 bp):
ATACTTTT
Found at i:7609931 original size:25 final size:25
Alignment explanation
Indices: 7609888--7609955 Score: 91
Period size: 25 Copynumber: 2.6 Consensus size: 25
7609878 AAAATTAAGA
*
7609888 TTAGAACTTAGAACTTAAGTTTAGAAC
1 TTAGAA-TTAG-ATTTAAGTTTAGAAC
*
7609915 TTCGAATTAGATTTAAGTTTAGAAC
1 TTAGAATTAGATTTAAGTTTAGAAC
*
7609940 TTAGGATTAGATTTAA
1 TTAGAATTAGATTTAA
7609956 TAAGGATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 28 0.76
26 4 0.11
27 5 0.14
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (25 bp):
TTAGAATTAGATTTAAGTTTAGAAC
Found at i:7614976 original size:28 final size:29
Alignment explanation
Indices: 7614922--7614976 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
7614912 AATTGTAAAT
* *
7614922 GGTTTCTAGTTAAGCCATTAAAGCTAGAG
1 GGTTTCTAGTTAAGCCATAAAAACTAGAG
* *
7614951 GGTTT-TAGTTTAGGCATAAAAACTAG
1 GGTTTCTAGTTAAGCCATAAAAACTAG
7614977 GGGGAAGGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 17 0.77
29 5 0.23
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (29 bp):
GGTTTCTAGTTAAGCCATAAAAACTAGAG
Found at i:7615405 original size:29 final size:29
Alignment explanation
Indices: 7615363--7615435 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
7615353 ATTTCTTTTT
7615363 TGGTCACCCAACTATGAAAAGTTAAAAAA
1 TGGTCACCCAACTATGAAAAGTTAAAAAA
* * *
7615392 TGGTCACCTAACTATGAGAAGTTACAAAA
1 TGGTCACCCAACTATGAAAAGTTAAAAAA
**
7615421 TAATCACCCAACTAT
1 TGGTCACCCAACTAT
7615436 TCAATATTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.23
Consensus pattern (29 bp):
TGGTCACCCAACTATGAAAAGTTAAAAAA
Found at i:7616351 original size:48 final size:48
Alignment explanation
Indices: 7616296--7616392 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
7616286 CTCTTTTAAC
* *
7616296 CATGCCATATCAAAACATACTTAATTTATAATAGATTAAACATTACTA
1 CATGCCATATCAAAACATACTCAATTTATAATAGATTAAACATAACTA
*
7616344 CATGCCATATCAAAACATACTCAATTTATGATAGATTAAACATAACTA
1 CATGCCATATCAAAACATACTCAATTTATAATAGATTAAACATAACTA
7616392 C
1 C
7616393 GTGATACCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (48 bp):
CATGCCATATCAAAACATACTCAATTTATAATAGATTAAACATAACTA
Found at i:7621647 original size:9 final size:9
Alignment explanation
Indices: 7621633--7621660 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
7621623 TCTTGAATTC
7621633 TTGATAAGA
1 TTGATAAGA
7621642 TTGATAAGA
1 TTGATAAGA
7621651 TTGATAAGA
1 TTGATAAGA
7621660 T
1 T
7621661 AGGAGGGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (9 bp):
TTGATAAGA
Found at i:7623477 original size:111 final size:111
Alignment explanation
Indices: 7623255--7623468 Score: 419
Period size: 111 Copynumber: 1.9 Consensus size: 111
7623245 AAAACTGTAA
*
7623255 AAAACATTATACTTGAGCTAACAAAGACAACCTTTTCCTAGAATACCTGTCCACTTATCACCATC
1 AAAACATTATACTTGAGCTAACAAAGACAACCTTTTCCTAGAATAACTGTCCACTTATCACCATC
7623320 TTCTATGAAAGCATGCAATGCATTGACACCATTTTCAAATAACTGC
66 TTCTATGAAAGCATGCAATGCATTGACACCATTTTCAAATAACTGC
7623366 AAAACATTATACTTGAGCTAACAAAGACAACCTTTTCCTAGAATAACTGTCCACTTATCACCATC
1 AAAACATTATACTTGAGCTAACAAAGACAACCTTTTCCTAGAATAACTGTCCACTTATCACCATC
7623431 TTCTATGAAAGCATGCAATGCATTGACACCATTTTCAA
66 TTCTATGAAAGCATGCAATGCATTGACACCATTTTCAA
7623469 GACACTGCAT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 102 1.00
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.29
Consensus pattern (111 bp):
AAAACATTATACTTGAGCTAACAAAGACAACCTTTTCCTAGAATAACTGTCCACTTATCACCATC
TTCTATGAAAGCATGCAATGCATTGACACCATTTTCAAATAACTGC
Found at i:7641095 original size:22 final size:24
Alignment explanation
Indices: 7641069--7641112 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7641059 GAAAAATATT
7641069 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
7641091 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
7641113 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:7641321 original size:16 final size:16
Alignment explanation
Indices: 7641300--7641341 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7641290 AATAATTTGA
*
7641300 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
7641316 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
7641332 TAGTTTTAAT
1 TAATTTTAAT
7641342 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:7645612 original size:19 final size:19
Alignment explanation
Indices: 7645562--7645599 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7645552 TAAAATAGTA
7645562 AAAAATA-TAAAATTTTAT
1 AAAAATATTAAAATTTTAT
7645580 AAAAATATTAAAATTTTAT
1 AAAAATATTAAAATTTTAT
7645599 A
1 A
7645600 TAAACTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATATTAAAATTTTAT
Found at i:7647117 original size:31 final size:31
Alignment explanation
Indices: 7647073--7647131 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
7647063 TAAAATGATT
* *
7647073 ATTGAATTGTTTGAAAG-TTTTCATTTAAATC
1 ATTGAACTATTTGAAAGCTTTT-ATTTAAATC
7647104 ATTGAACTATTTGAAAGCTTTTATTTAA
1 ATTGAACTATTTGAAAGCTTTTATTTAA
7647132 GTTACTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTGAACTATTTGAAAGCTTTTATTTAAATC
Found at i:7661041 original size:17 final size:18
Alignment explanation
Indices: 7661009--7661043 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
7660999 ATGTGTTCTA
7661009 AATTACATAATATATAAAG
1 AATTACAT-ATATATAAAG
7661028 AATTACAT-TATATAAA
1 AATTACATATATATAAA
7661044 ATATTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (18 bp):
AATTACATATATATAAAG
Found at i:7662246 original size:18 final size:17
Alignment explanation
Indices: 7662213--7662251 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7662203 TTTTATAAAT
7662213 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7662231 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7662248 TGTG
1 TGTG
7662252 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7662506 original size:23 final size:23
Alignment explanation
Indices: 7662480--7662529 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
7662470 GTTATTGATT
*
7662480 AGTGGTAGATTCGGCTACATTTC
1 AGTGGTAGATTCGGCTACATATC
*
7662503 AGTGGTAGCTTCGGCTACATATC
1 AGTGGTAGATTCGGCTACATATC
7662526 AGTG
1 AGTG
7662530 TGGCACTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (23 bp):
AGTGGTAGATTCGGCTACATATC
Found at i:7665045 original size:88 final size:88
Alignment explanation
Indices: 7664896--7665073 Score: 356
Period size: 88 Copynumber: 2.0 Consensus size: 88
7664886 GGAAAAGCAA
7664896 CTAGAAATGTTGACCTAGTGGTGGGGTAAGTTTTTTATTATATAAACAAATTAACCAATCGGTGT
1 CTAGAAATGTTGACCTAGTGGTGGGGTAAGTTTTTTATTATATAAACAAATTAACCAATCGGTGT
7664961 TCCAATGGAACACAAACAAAGTG
66 TCCAATGGAACACAAACAAAGTG
7664984 CTAGAAATGTTGACCTAGTGGTGGGGTAAGTTTTTTATTATATAAACAAATTAACCAATCGGTGT
1 CTAGAAATGTTGACCTAGTGGTGGGGTAAGTTTTTTATTATATAAACAAATTAACCAATCGGTGT
7665049 TCCAATGGAACACAAACAAAGTG
66 TCCAATGGAACACAAACAAAGTG
7665072 CT
1 CT
7665074 GGGAATTTGA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (88 bp):
CTAGAAATGTTGACCTAGTGGTGGGGTAAGTTTTTTATTATATAAACAAATTAACCAATCGGTGT
TCCAATGGAACACAAACAAAGTG
Found at i:7667855 original size:60 final size:58
Alignment explanation
Indices: 7667778--7667915 Score: 159
Period size: 60 Copynumber: 2.3 Consensus size: 58
7667768 AAAAACCAAG
*
7667778 TTTAGGTACCAATTTGAACCAAGAAGCCAAGTTTAAATACCTAATTGGATCAAAATAAAC
1 TTTAGGTACCAATTTGAACCAA-AAGCCAAGTTCAAATACCTAATTGGATCAAAA-AAAC
* * *** * **
7667838 TTTAAGTACCAAATTGAATGTTAAAGCCAAGTTCAAGTACCTAATTGGATTGAAAAAAC
1 TTTAGGTACCAATTTGAA-CCAAAAGCCAAGTTCAAATACCTAATTGGATCAAAAAAAC
*
7667897 CTTAGGTACCAATTTGAAC
1 TTTAGGTACCAATTTGAAC
7667916 TTTGAAGGCA
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
59 19 0.30
60 44 0.69
61 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.28
Consensus pattern (58 bp):
TTTAGGTACCAATTTGAACCAAAAGCCAAGTTCAAATACCTAATTGGATCAAAAAAAC
Found at i:7669674 original size:16 final size:16
Alignment explanation
Indices: 7669641--7669674 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7669631 TAGAGCTGTT
* *
7669641 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7669657 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7669673 AA
1 AA
7669675 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7674453 original size:16 final size:16
Alignment explanation
Indices: 7674420--7674453 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7674410 GGAGATTGTT
* *
7674420 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7674436 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7674452 AA
1 AA
7674454 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7676363 original size:16 final size:16
Alignment explanation
Indices: 7676330--7676366 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7676320 ATGATTTTAT
*
7676330 TCACCAATTGTTTAGA
1 TCACCAATTGTTCAGA
*
7676346 TCACCAATTGTTCGGA
1 TCACCAATTGTTCAGA
7676362 TCACC
1 TCACC
7676367 TATTAGCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (16 bp):
TCACCAATTGTTCAGA
Done.