Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 25 of 228
Found at i:8016998 original size:7 final size:7
Alignment explanation
Indices: 8016988--8017035 Score: 69
Period size: 7 Copynumber: 6.7 Consensus size: 7
8016978 CCCCTAAATT
8016988 CCTAACC
1 CCTAACC
*
8016995 CCTAACT
1 CCTAACC
8017002 CCTAACC
1 CCTAACC
*
8017009 CCTAAATC
1 CCT-AACC
8017017 CCTAACC
1 CCTAACC
8017024 CCTAACC
1 CCTAACC
8017031 CCTAA
1 CCTAA
8017036 ACCATATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
7 30 0.83
8 6 0.17
ACGTcount: A:0.31, C:0.50, G:0.00, T:0.19
Consensus pattern (7 bp):
CCTAACC
Found at i:8017010 original size:29 final size:29
Alignment explanation
Indices: 8016942--8017035 Score: 109
Period size: 29 Copynumber: 3.2 Consensus size: 29
8016932 CACCCTAAAT
* * *
8016942 TCCTAACCCCT-AACTCTTAACCCTTAAATC
1 TCCTAACCCCTAAATTCCTAACCCCT-AA-C
*
8016972 TCCTAGCCCCTAAATTCCTAACCCCTAAC
1 TCCTAACCCCTAAATTCCTAACCCCTAAC
*
8017001 TCCTAACCCCTAAATCCCTAACCCCTAAC
1 TCCTAACCCCTAAATTCCTAACCCCTAAC
*
8017030 CCCTAA
1 TCCTAA
8017036 ACCATATATC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
29 33 0.59
30 12 0.21
31 11 0.20
ACGTcount: A:0.30, C:0.45, G:0.01, T:0.24
Consensus pattern (29 bp):
TCCTAACCCCTAAATTCCTAACCCCTAAC
Found at i:8017046 original size:29 final size:29
Alignment explanation
Indices: 8016982--8017053 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
8016972 TCCTAGCCCC
* * * *
8016982 TAAATTCCTAACCCCTAACTCCTAACCCC
1 TAAATCCCTAACCCCTAACCCCTAAACCA
8017011 TAAATCCCTAACCCCTAACCCCTAAACCA
1 TAAATCCCTAACCCCTAACCCCTAAACCA
* *
8017040 TATATCCCAAACCC
1 TAAATCCCTAACCC
8017054 TAATAATCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (29 bp):
TAAATCCCTAACCCCTAACCCCTAAACCA
Found at i:8017052 original size:22 final size:22
Alignment explanation
Indices: 8017005--8017053 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
8016995 CCTAACTCCT
* *
8017005 AACCCCTAAATCCCTAACCCCT
1 AACCCCTAAATCCATAACCCCA
*
8017027 AACCCCTAAA-CCATATATCCCA
1 AACCCCTAAATCCATA-ACCCCA
8017049 AACCC
1 AACCC
8017054 TAATAATCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (22 bp):
AACCCCTAAATCCATAACCCCA
Found at i:8017756 original size:19 final size:19
Alignment explanation
Indices: 8017729--8017770 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8017719 AAAATTATAT
* *
8017729 TTTTTATTTTTTTATTTCA
1 TTTTCATTTTTGTATTTCA
*
8017748 TTTTCATTTTTGTATTTTA
1 TTTTCATTTTTGTATTTCA
8017767 TTTT
1 TTTT
8017771 TTCTTATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTTCATTTTTGTATTTCA
Found at i:8018184 original size:21 final size:20
Alignment explanation
Indices: 8018154--8018194 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
8018144 CCTAACTCCT
*
8018154 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
8018175 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
8018195 TAAATCCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:8019154 original size:41 final size:41
Alignment explanation
Indices: 8019094--8019373 Score: 359
Period size: 41 Copynumber: 6.8 Consensus size: 41
8019084 TTATTATTAC
* * *
8019094 TAGCGGCGCTTTTTTAAAAACGCCGCTAAAGGCCACAGCAA
1 TAGCGGCGCTTCTTTAAAAACGCCGCTAAAGGCCAGAGCAT
* ** *
8019135 TACCGGCGCTTCTTTAAAAACGCCGCTAAAGATCTGAGCAT
1 TAGCGGCGCTTCTTTAAAAACGCCGCTAAAGGCCAGAGCAT
* * *
8019176 TAGCGGCGCTTCTTCAAAAACGCCGCTAAAAGACAGAGCAT
1 TAGCGGCGCTTCTTTAAAAACGCCGCTAAAGGCCAGAGCAT
* *
8019217 TAGCGGCGCTT-TTTCAAAAACGCCGCTAAAAGACAGAGCAT
1 TAGCGGCGCTTCTTT-AAAAACGCCGCTAAAGGCCAGAGCAT
8019258 TAGCGGCGCTT-TTTCAAAAACGCCGCTAAAGGCCAGAGCAT
1 TAGCGGCGCTTCTTT-AAAAACGCCGCTAAAGGCCAGAGCAT
* *
8019299 TAGCGGCACTTAC-TCAAAAACGCCGCTAAAGGCCAGAGCAT
1 TAGCGGCGCTT-CTTTAAAAACGCCGCTAAAGGCCAGAGCAT
* * *
8019340 TAGCGGCGTTTATTCAAAAACGCCGCTAAAGGCC
1 TAGCGGCGCTTCTTTAAAAACGCCGCTAAAGGCC
8019374 CCAAAAACTC
Statistics
Matches: 214, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
40 2 0.01
41 211 0.99
42 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (41 bp):
TAGCGGCGCTTCTTTAAAAACGCCGCTAAAGGCCAGAGCAT
Found at i:8019316 original size:123 final size:123
Alignment explanation
Indices: 8019094--8019369 Score: 396
Period size: 123 Copynumber: 2.2 Consensus size: 123
8019084 TTATTATTAC
* * *
8019094 TAGCGGCGCTTTTTTAAAAACGCCGCTAAAGGCCACAGCAATACCGGCGCTTCTTTAAAAACGCC
1 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGACACAGCAATACCGGCGCTTCTTTAAAAACGCC
* * *
8019159 GCTAAAGATCTGAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAAGACAGAGCAT
66 GCTAAAGACCAGAGCATTAGCGGCACTTCTTCAAAAACGCCGCTAAAAGACAGAGCAT
* * *
8019217 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTT-TTTCAAAAACGC
1 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGACACAGCAATACCGGCGCTTCTTT-AAAAACGC
* * *
8019281 CGCTAAAGGCCAGAGCATTAGCGGCACTTAC-TCAAAAACGCCGCTAAAGGCCAGAGCAT
65 CGCTAAAGACCAGAGCATTAGCGGCACTT-CTTCAAAAACGCCGCTAAAAGACAGAGCAT
8019340 TAGCGGCG-TTTATTCAAAAACGCCGCTAAA
1 TAGCGGCGCTTT-TTCAAAAACGCCGCTAAA
8019370 GGCCCCAAAA
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
122 6 0.04
123 131 0.95
124 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (123 bp):
TAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGACACAGCAATACCGGCGCTTCTTTAAAAACGCC
GCTAAAGACCAGAGCATTAGCGGCACTTCTTCAAAAACGCCGCTAAAAGACAGAGCAT
Found at i:8019513 original size:40 final size:40
Alignment explanation
Indices: 8019428--8019546 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
8019418 GCACTTTTCA
* * *
8019428 GAAAA-CGCCGCTAATGCT-TATTTTTAGCGGAATTTTTG
1 GAAAAGCGCCGCTAATGCTCTATTTTTAGTGGCATTTTTT
* **
8019466 GATAAGCGCCGCTAATGCTCTACCTTTAGTGGCATTTTTT
1 GAAAAGCGCCGCTAATGCTCTATTTTTAGTGGCATTTTTT
* * *
8019506 TAAAAGCGCCGCTAATGCTCGATTTTTAGTGGCGTTTTTT
1 GAAAAGCGCCGCTAATGCTCTATTTTTAGTGGCATTTTTT
8019546 G
1 G
8019547 TCCAAACGCC
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
38 4 0.06
39 13 0.20
40 49 0.74
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (40 bp):
GAAAAGCGCCGCTAATGCTCTATTTTTAGTGGCATTTTTT
Found at i:8021330 original size:75 final size:75
Alignment explanation
Indices: 8021238--8021379 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 75
8021228 TTTTTCGGTT
* * *
8021238 TATCCGACTAGCGCTGGGCG-CAATCACTGTTAGTTTATCCAACTAGAGCTAGACTCACAATTAT
1 TATCCGACTAGCACTGGGCGAAAAT-ACTGTTAGTCTATCCAACTAGAGCTAGACTCACAATTAT
8021302 TATCATCGGCA
65 TATCATCGGCA
* * * * * *
8021313 TATCCGACTAGCACTGGGTGAAAATATTTTTGGTCTATCCAACTAGAGCTGGGCTCACAATTATT
1 TATCCGACTAGCACTGGGCGAAAATACTGTTAGTCTATCCAACTAGAGCTAGACTCACAATTATT
8021378 AT
66 AT
8021380 TGTCTGTTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
75 54 0.95
76 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (75 bp):
TATCCGACTAGCACTGGGCGAAAATACTGTTAGTCTATCCAACTAGAGCTAGACTCACAATTATT
ATCATCGGCA
Found at i:8022961 original size:16 final size:16
Alignment explanation
Indices: 8022922--8022964 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
8022912 AAAAAAAAAA
*
8022922 TTGATTGACCAAAATG
1 TTGAGTGACCAAAATG
**
8022938 -AAAGTGACCAAAATG
1 TTGAGTGACCAAAATG
8022953 TTGAGTGACCAA
1 TTGAGTGACCAA
8022965 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (16 bp):
TTGAGTGACCAAAATG
Found at i:8023179 original size:13 final size:13
Alignment explanation
Indices: 8023161--8023186 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8023151 TTATTAATTA
8023161 CTTATTTTTTTAT
1 CTTATTTTTTTAT
8023174 CTTATTTTTTTAT
1 CTTATTTTTTTAT
8023187 TCAATAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTATTTTTTTAT
Found at i:8023372 original size:15 final size:16
Alignment explanation
Indices: 8023352--8023381 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8023342 GGGTATAATA
8023352 AAATAT-TAAAAGAAT
1 AAATATATAAAAGAAT
8023367 AAATATATAAAAGAA
1 AAATATATAAAAGAA
8023382 ATGAGACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (16 bp):
AAATATATAAAAGAAT
Found at i:8024489 original size:37 final size:36
Alignment explanation
Indices: 8024448--8024517 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
8024438 TTAATCTCAA
*
8024448 ATTTAATATATAATTGAA-TTAAATATAGATTTAAAAT
1 ATTTAATAT-TAATTGAAGTAAAATATA-ATTTAAAAT
* *
8024485 ATTTAATCTTACTTGAAGTAAAATATAATTTAA
1 ATTTAATATTAATTGAAGTAAAATATAATTTAA
8024518 TGAGAATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 13 0.45
37 16 0.55
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (36 bp):
ATTTAATATTAATTGAAGTAAAATATAATTTAAAAT
Found at i:8024603 original size:13 final size:13
Alignment explanation
Indices: 8024585--8024610 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8024575 AGAGGAAATT
8024585 AAGAAAAAACAAA
1 AAGAAAAAACAAA
8024598 AAGAAAAAACAAA
1 AAGAAAAAACAAA
8024611 TGATACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (13 bp):
AAGAAAAAACAAA
Found at i:8027068 original size:91 final size:90
Alignment explanation
Indices: 8026907--8027073 Score: 253
Period size: 90 Copynumber: 1.8 Consensus size: 90
8026897 GACCACCGCT
*
8026907 GGTTTTGCAGTACCGAATTTTGCAGTCTCATGATTGTCTGGCTAGATATGTGAAAACGATGGCTT
1 GGTTTTGCAGTACCGAATTTTGCAATCTCATGATTGTCTGGCTAGATATGTGAAAACGATGGCTT
8026972 GTAATTAAACACACCAACATTTGCA
66 GTAATTAAACACACCAACATTTGCA
* * * * * *
8026997 GGTTTTGCTGTACTGAATTTTGCAATCTTATGATTGTCATGGTTAGATTTGTGAAAATGATGGCT
1 GGTTTTGCAGTACCGAATTTTGCAATCTCATGATTGTC-TGGCTAGATATGTGAAAACGATGGCT
*
8027062 TGTAATTTAACA
65 TGTAATTAAACA
8027074 AATTTTTTTC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
90 34 0.50
91 34 0.50
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37
Consensus pattern (90 bp):
GGTTTTGCAGTACCGAATTTTGCAATCTCATGATTGTCTGGCTAGATATGTGAAAACGATGGCTT
GTAATTAAACACACCAACATTTGCA
Found at i:8029277 original size:389 final size:391
Alignment explanation
Indices: 8028553--8029337 Score: 1520
Period size: 389 Copynumber: 2.0 Consensus size: 391
8028543 ACAACTCAGG
*
8028553 TCGAATGGGGATGAACTATTCATTGGCGTCATAGGAGCCACTCTTACTGTTGCGAAATATTGGCT
1 TCGAGTGGGGATGAACTATTCATTGGCGTCATAGGAGCCACTCTTACTGTTGCGAAATATTGGCT
8028618 CGAGACTACTGAGCACATTATGACAGATCTTGACTGTACTCCCACTCAGAAATTGAGGGGTGTTG
66 CGAGACTACTGAGCACATTATGACAGATCTTGACTGTACTCCCACTCAGAAATTGAGGGGTGTTG
8028683 TGTCTTTACTCTGGGACGAAGCTTATAAGTGGTGGCTGACAGCTAAACAAGGTGCTCAGCCCGAA
131 TGTCTTTACTCTGGGACGAAGCTTATAAGTGGTGGCTGACAGCTAAACAAGGTGCTCAGCCCGAA
8028748 CAGGTTAACTGGGATTATTTCAAGAACGCCTTTCAGGGTAAGTATGTGGGGGCGAGTTATGTTTA
196 CAGGTTAACTGGGATTATTTCAAGAACGCCTTTCAGGGTAAGTATGTGGGGGCGAGTTATGTTTA
*
8028813 GGCTCATCGACGTGAGTTTATGAGTTTAGTTCAGGGTGACCGATATATGGCTGAATATGAAGCTG
261 GGCTCATCGACGTGAGTTTATGAGTTTAATTCAGGGTGACCGATATATGGCTGAATATGAAGCTG
*
8028878 AGTTTCTGCGACTGAATAGGTATGCACGGACTTTGGCAGCATTTGACTACGACAGGTGCGTGAGG
326 AGTTTCTGCGACTGAATAGGTATACACGGACTTTGGCAGCATTTGACTACGACAGGTGCGTGAGG
8028943 T
391 T
8028944 TCGAGTGGGGATGAACTATTCATTGGCGTCATAGGAGCCACTCTTACTGTTGCGAAATATTGGCT
1 TCGAGTGGGGATGAACTATTCATTGGCGTCATAGGAGCCACTCTTACTGTTGCGAAATATTGGCT
8029009 CGAGACTACTGAGCACATTATGACAGATCTTGACTGTACTCCCACTCAGAAATTGAGGGGTG-T-
66 CGAGACTACTGAGCACATTATGACAGATCTTGACTGTACTCCCACTCAGAAATTGAGGGGTGTTG
8029072 TGTCTTTACTCTGGGACGAAGCTTATAAGTGGTGGCTGACAGCTAAACAAGGTGCTCAGCCCGAA
131 TGTCTTTACTCTGGGACGAAGCTTATAAGTGGTGGCTGACAGCTAAACAAGGTGCTCAGCCCGAA
8029137 CAGGTTAACTGGGATTATTTCAAGAACGCCTTTCAGGGTAAGTATGTGGGGGCGAGTTATGTTTA
196 CAGGTTAACTGGGATTATTTCAAGAACGCCTTTCAGGGTAAGTATGTGGGGGCGAGTTATGTTTA
8029202 GGCTCATCGACGTGAGTTTATGAGTTTAATTCAGGGTGACCGATATATGGCTGAATATGAAGCTG
261 GGCTCATCGACGTGAGTTTATGAGTTTAATTCAGGGTGACCGATATATGGCTGAATATGAAGCTG
*
8029267 AGTTTCTGCGACTGAATAGGTATACACGGATTTTGGCAGCATTTGACTACGACAGGTGCGTGAGG
326 AGTTTCTGCGACTGAATAGGTATACACGGACTTTGGCAGCATTTGACTACGACAGGTGCGTGAGG
8029332 T
391 T
8029333 TCGAG
1 TCGAG
8029338 GAAGGACTGA
Statistics
Matches: 390, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
389 263 0.67
390 1 0.00
391 126 0.32
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (391 bp):
TCGAGTGGGGATGAACTATTCATTGGCGTCATAGGAGCCACTCTTACTGTTGCGAAATATTGGCT
CGAGACTACTGAGCACATTATGACAGATCTTGACTGTACTCCCACTCAGAAATTGAGGGGTGTTG
TGTCTTTACTCTGGGACGAAGCTTATAAGTGGTGGCTGACAGCTAAACAAGGTGCTCAGCCCGAA
CAGGTTAACTGGGATTATTTCAAGAACGCCTTTCAGGGTAAGTATGTGGGGGCGAGTTATGTTTA
GGCTCATCGACGTGAGTTTATGAGTTTAATTCAGGGTGACCGATATATGGCTGAATATGAAGCTG
AGTTTCTGCGACTGAATAGGTATACACGGACTTTGGCAGCATTTGACTACGACAGGTGCGTGAGG
T
Found at i:8036803 original size:22 final size:22
Alignment explanation
Indices: 8036762--8036803 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8036752 AATAAAAATA
* *
8036762 TGCTATTTTTTTATTGTTTTAC
1 TGCTATTTTCTTATTATTTTAC
*
8036784 TGCTATTTTCTTGTTATTTT
1 TGCTATTTTCTTATTATTTT
8036804 CTTACTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.10, G:0.10, T:0.69
Consensus pattern (22 bp):
TGCTATTTTCTTATTATTTTAC
Found at i:8045074 original size:23 final size:24
Alignment explanation
Indices: 8045020--8045074 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 24
8045010 TTAAAAATAA
*
8045020 AAAAATAGAAATAGAAAATTAAAATT
1 AAAAA-AG-AATAGAAAATTAAAATG
8045046 AAAAAAGAATA-AAAATTAAAA-G
1 AAAAAAGAATAGAAAATTAAAATG
8045068 AATAAAA
1 AA-AAAA
8045075 AATTTTGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 2 0.07
23 14 0.52
24 4 0.15
25 2 0.07
26 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (24 bp):
AAAAAAGAATAGAAAATTAAAATG
Found at i:8045076 original size:17 final size:17
Alignment explanation
Indices: 8045040--8045075 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
8045030 ATAGAAAATT
8045040 AAAATTAAAAAAGAATA
1 AAAATTAAAAAAGAATA
8045057 AAAATT--AAAAGAATA
1 AAAATTAAAAAAGAATA
8045072 AAAA
1 AAAA
8045076 ATTTTGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 13 0.68
17 6 0.32
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAATTAAAAAAGAATA
Found at i:8046428 original size:11 final size:11
Alignment explanation
Indices: 8046414--8046457 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
8046404 AGATAAATAT
8046414 TATTTTATTAA
1 TATTTTATTAA
*
8046425 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
8046438 TATTTTATTAT
1 TATTTTATTAA
8046449 TATTTTATT
1 TATTTTATT
8046458 TAGTATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:8048537 original size:21 final size:21
Alignment explanation
Indices: 8048496--8048669 Score: 102
Period size: 21 Copynumber: 8.3 Consensus size: 21
8048486 TAGCTCTCAC
* * *
8048496 GAGTTTCTGTT-AACTCATAT
1 GAGTTTCAGTTCAACCCTTAT
*
8048516 GAGTTTCAGTTTAACCCTTAT
1 GAGTTTCAGTTCAACCCTTAT
* * * * *
8048537 GGGTTTCCGTTCAGCTCTTTT
1 GAGTTTCAGTTCAACCCTTAT
* * *
8048558 GAGCTTCAATTTAACCCTTAT
1 GAGTTTCAGTTCAACCCTTAT
* * * *
8048579 GGGTTTCCGTTCAGCTCTTAT
1 GAGTTTCAGTTCAACCCTTAT
*
8048600 GAGCTTCCA-TTCAACCCTTAT
1 GAG-TTTCAGTTCAACCCTTAT
* * * *
8048621 GGGTTTCCGTTCAGCTCTTAT
1 GAGTTTCAGTTCAACCCTTAT
*
8048642 GAGCTTCCA-TTCAACCCTTAT
1 GAG-TTTCAGTTCAACCCTTAT
*
8048663 GGGTTTC
1 GAGTTTC
8048670 TGTTTAGCAC
Statistics
Matches: 109, Mismatches: 41, Indels: 8
0.69 0.26 0.05
Matches are distributed among these distances:
20 16 0.15
21 87 0.80
22 6 0.06
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (21 bp):
GAGTTTCAGTTCAACCCTTAT
Found at i:8048572 original size:42 final size:42
Alignment explanation
Indices: 8048513--8048684 Score: 254
Period size: 42 Copynumber: 4.1 Consensus size: 42
8048503 TGTTAACTCA
* * *
8048513 TATGAGTTTCAGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAATTCAACCCTTATGGGTTTCCGTTCAGCTCT
* *
8048555 TTTGAGCTTCAATTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAATTCAACCCTTATGGGTTTCCGTTCAGCTCT
*
8048597 TATGAGCTTCCATTCAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAATTCAACCCTTATGGGTTTCCGTTCAGCTCT
* * * *
8048639 TATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTTAGCACT
1 TATGAGCTTCAATTCAACCCTTATGGGTTTCCGTTCAGCTCT
8048681 TATG
1 TATG
8048685 TGCATCTGTG
Statistics
Matches: 121, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 121 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (42 bp):
TATGAGCTTCAATTCAACCCTTATGGGTTTCCGTTCAGCTCT
Found at i:8061673 original size:16 final size:16
Alignment explanation
Indices: 8061652--8061683 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8061642 ATTAGAGAAA
8061652 ATCCTTCGACAAACCT
1 ATCCTTCGACAAACCT
*
8061668 ATCCTTTGACAAACCT
1 ATCCTTCGACAAACCT
8061684 TCAGTAGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.28
Consensus pattern (16 bp):
ATCCTTCGACAAACCT
Found at i:8066444 original size:23 final size:24
Alignment explanation
Indices: 8066400--8066445 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
8066390 TTTCTCACAT
* **
8066400 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
8066424 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
8066446 AATGCACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:8066568 original size:17 final size:18
Alignment explanation
Indices: 8066543--8066612 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 18
8066533 AACAAACAAT
8066543 TCAAATATT-AATTCATA
1 TCAAATATTCAATTCATA
* * *
8066560 TCAATTATTCAATTTAATTCCT
1 TCAAATATTCAA-TTCA-T--A
8066582 TCAAATATT-AATTCATA
1 TCAAATATTCAATTCATA
*
8066599 TCAATTATTCAATT
1 TCAAATATTCAATT
8066613 TAATTCCCAC
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
17 16 0.40
18 6 0.15
19 4 0.10
20 4 0.10
21 2 0.05
22 8 0.20
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (18 bp):
TCAAATATTCAATTCATA
Found at i:8066591 original size:39 final size:39
Alignment explanation
Indices: 8066542--8066619 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
8066532 CAACAAACAA
8066542 TTCAAATATTAATTCATATCAATTATTCAATTTAATTCC
1 TTCAAATATTAATTCATATCAATTATTCAATTTAATTCC
8066581 TTCAAATATTAATTCATATCAATTATTCAATTTAATTCC
1 TTCAAATATTAATTCATATCAATTATTCAATTTAATTCC
8066620 CACTCATAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (39 bp):
TTCAAATATTAATTCATATCAATTATTCAATTTAATTCC
Found at i:8067561 original size:14 final size:17
Alignment explanation
Indices: 8067542--8067579 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
8067532 ATTTATTTCT
8067542 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
8067556 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
8067573 TAATATA
1 TAATATA
8067580 CTTTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:8067587 original size:12 final size:11
Alignment explanation
Indices: 8067559--8067602 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
8067549 ATATTTATAA
8067559 TATAATTAATT
1 TATAATTAATT
*
8067570 TAATAATATACTT
1 T-ATAAT-TAATT
8067583 TATAATTAATT
1 TATAATTAATT
8067594 TATATATTA
1 TATA-ATTA
8067603 TATAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 9 0.32
12 14 0.50
13 5 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
TATAATTAATT
Found at i:8067606 original size:20 final size:23
Alignment explanation
Indices: 8067554--8067616 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
8067544 ATATAATATT
8067554 TATA-ATATAATTAATTTAATAA
1 TATATATATAATTAATTTAATAA
* *
8067576 TATACTTTATAATTAATTTATATAT
1 TATA-TATATAATTAATTTA-ATAA
* *
8067601 TATATAAATAAATAAT
1 TATATATATAATTAAT
8067617 ATAAATATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 4 0.12
24 22 0.67
25 7 0.21
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TATATATATAATTAATTTAATAA
Found at i:8067618 original size:20 final size:20
Alignment explanation
Indices: 8067571--8067619 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
8067561 TAATTAATTT
*
8067571 AATAATATACTTTATAATTA
1 AATAATATACTTTATAAATA
* *
8067591 ATTTATATA-TTATATAAATA
1 AATAATATACTT-TATAAATA
8067611 AATAATATA
1 AATAATATA
8067620 AATATCTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATATACTTTATAAATA
Found at i:8068579 original size:112 final size:110
Alignment explanation
Indices: 8068384--8068584 Score: 262
Period size: 112 Copynumber: 1.8 Consensus size: 110
8068374 CCGTGTGACT
* * * *
8068384 CACACGGCCTGGGCACATGCTCGTGTGCTTACTCGTGTGGTCCTAAATCACAAACAGTGAGTTAT
1 CACACAGCCTGGACACACGCTCGTGTGCTTACTCGTGTGGTCCTAAATCACAAACAGTGAGTTAC
* *
8068449 TCGACCTAGATACATGCCCATGTGAACCCTGCACTAACATGGCCA
66 ACGACCTAGACACATGCCCATGTGAACCCTGCACTAACATGGCCA
* * *
8068494 CACACAGCCTGGACACACGCTCGTGTGCCTTGCTTGTGTGG-CTTCAAATCA-ATGAACAGTGAG
1 CACACAGCCTGGACACACGCTCGTGTG-CTTACTCGTGTGGTCCT-AAATCACA--AACAGTGAG
*
8068557 TTACACGACCTAGACACATGCCCGTGTG
62 TTACACGACCTAGACACATGCCCATGTG
8068585 CCTGGCCGTG
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
110 27 0.35
111 17 0.22
112 33 0.43
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (110 bp):
CACACAGCCTGGACACACGCTCGTGTGCTTACTCGTGTGGTCCTAAATCACAAACAGTGAGTTAC
ACGACCTAGACACATGCCCATGTGAACCCTGCACTAACATGGCCA
Found at i:8087275 original size:13 final size:12
Alignment explanation
Indices: 8087254--8087352 Score: 67
Period size: 12 Copynumber: 7.9 Consensus size: 12
8087244 TGCAAGAGAT
*
8087254 AAAAGCTTAATTG
1 AAAAACTTAA-TG
8087267 AAAAACTTAATG
1 AAAAACTTAATG
*
8087279 ATTAAAAACTTGATG
1 ---AAAAACTTAATG
* *
8087294 GAAAACTTTATG
1 AAAAACTTAATG
*
8087306 AAAAGACTTGATG
1 AAAA-ACTTAATG
8087319 AAAAACTTAA--
1 AAAAACTTAATG
*
8087329 AAAGAACTTGATG
1 AAA-AACTTAATG
*
8087342 CAAAACTTAAT
1 AAAAACTTAAT
8087353 AACAAAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
10 3 0.04
11 6 0.09
12 27 0.39
13 22 0.32
15 11 0.16
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (12 bp):
AAAAACTTAATG
Found at i:8087298 original size:12 final size:12
Alignment explanation
Indices: 8087277--8087349 Score: 69
Period size: 12 Copynumber: 6.1 Consensus size: 12
8087267 AAAAACTTAA
*
8087277 TGATTAAAAACT
1 TGATGAAAAACT
*
8087289 TGATGGAAAACT
1 TGATGAAAAACT
*
8087301 TTATGAAAAGACT
1 TGATGAAAA-ACT
8087314 TGATGAAAAACT
1 TGATGAAAAACT
*
8087326 T-A-AAAAGAACT
1 TGATGAAA-AACT
*
8087337 TGATGCAAAACT
1 TGATGAAAAACT
8087349 T
1 T
8087350 AATAACAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
10 3 0.06
11 6 0.12
12 27 0.55
13 13 0.27
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.27
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:8087323 original size:25 final size:25
Alignment explanation
Indices: 8087265--8087349 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
8087255 AAAGCTTAAT
* *
8087265 TGAAAAACTTAATGATTAAAAACTTGA
1 TGAAAAACTTTATGA--AAAGACTTGA
*
8087292 TGGAAAACTTTATGAAAAGACTTGA
1 TGAAAAACTTTATGAAAAGACTTGA
8087317 TGAAAAAC-TTA--AAAAGAACTTGA
1 TGAAAAACTTTATGAAAAG-ACTTGA
*
8087340 TGCAAAACTT
1 TGAAAAACTT
8087350 AATAACAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
22 5 0.10
23 13 0.25
24 4 0.08
25 16 0.31
27 13 0.25
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.27
Consensus pattern (25 bp):
TGAAAAACTTTATGAAAAGACTTGA
Found at i:8087350 original size:23 final size:23
Alignment explanation
Indices: 8087285--8087351 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 23
8087275 AATGATTAAA
*
8087285 AACTTGATGGAAAACTTTATGAAAAG
1 AACTTGATGAAAAAC-TTA--AAAAG
8087311 -ACTTGATGAAAAACTTAAAAAG
1 AACTTGATGAAAAACTTAAAAAG
*
8087333 AACTTGATGCAAAACTTAA
1 AACTTGATGAAAAACTTAA
8087352 TAACAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 3 0.08
25 13 0.34
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.25
Consensus pattern (23 bp):
AACTTGATGAAAAACTTAAAAAG
Found at i:8087409 original size:14 final size:13
Alignment explanation
Indices: 8087375--8087416 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
8087365 CTTGGTAATT
8087375 AAAAACTTGAT-A
1 AAAAACTTGATGA
8087387 AAAGAACTTGATGA
1 AAA-AACTTGATGA
*
8087401 AAAACACTTGAAGA
1 AAAA-ACTTGATGA
8087415 AA
1 AA
8087417 GAAAACACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 3 0.12
13 9 0.35
14 14 0.54
ACGTcount: A:0.57, C:0.10, G:0.14, T:0.19
Consensus pattern (13 bp):
AAAAACTTGATGA
Found at i:8088826 original size:16 final size:16
Alignment explanation
Indices: 8088805--8088845 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
8088795 GTTTAACTGC
* *
8088805 AAAATAAGATAAGATA
1 AAAATAAAATAAAATA
8088821 AAAATAAAATAAAAT-
1 AAAATAAAATAAAATA
8088836 AAAATAAAAT
1 AAAATAAAAT
8088846 GTGCGTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:8088829 original size:5 final size:5
Alignment explanation
Indices: 8088805--8088845 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
8088795 GTTTAACTGC
* *
8088805 AAAAT AAGAT AAGAT AAAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
8088846 GTGCGTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:8088831 original size:21 final size:21
Alignment explanation
Indices: 8088805--8088844 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8088795 GTTTAACTGC
* *
8088805 AAAATAAGATAAGATAAAAAT
1 AAAATAAAATAAAATAAAAAT
8088826 AAAATAAAATAAAATAAAA
1 AAAATAAAATAAAATAAAA
8088845 TGTGCGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (21 bp):
AAAATAAAATAAAATAAAAAT
Found at i:8095624 original size:13 final size:12
Alignment explanation
Indices: 8095603--8095701 Score: 67
Period size: 12 Copynumber: 7.9 Consensus size: 12
8095593 TGCAAGAGAT
*
8095603 AAAAGCTTAATTG
1 AAAAACTTAA-TG
8095616 AAAAACTTAATG
1 AAAAACTTAATG
*
8095628 ATTAAAAACTTGATG
1 ---AAAAACTTAATG
* *
8095643 GAAAACTTTATG
1 AAAAACTTAATG
*
8095655 AAAAGACTTGATG
1 AAAA-ACTTAATG
8095668 AAAAACTTAA--
1 AAAAACTTAATG
*
8095678 AAAGAACTTGATG
1 AAA-AACTTAATG
*
8095691 CAAAACTTAAT
1 AAAAACTTAAT
8095702 AACAAAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
10 3 0.04
11 6 0.09
12 27 0.39
13 22 0.32
15 11 0.16
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (12 bp):
AAAAACTTAATG
Found at i:8095647 original size:12 final size:12
Alignment explanation
Indices: 8095626--8095698 Score: 69
Period size: 12 Copynumber: 6.1 Consensus size: 12
8095616 AAAAACTTAA
*
8095626 TGATTAAAAACT
1 TGATGAAAAACT
*
8095638 TGATGGAAAACT
1 TGATGAAAAACT
*
8095650 TTATGAAAAGACT
1 TGATGAAAA-ACT
8095663 TGATGAAAAACT
1 TGATGAAAAACT
*
8095675 T-A-AAAAGAACT
1 TGATGAAA-AACT
*
8095686 TGATGCAAAACT
1 TGATGAAAAACT
8095698 T
1 T
8095699 AATAACAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
10 3 0.06
11 6 0.12
12 27 0.55
13 13 0.27
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.27
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:8095672 original size:25 final size:25
Alignment explanation
Indices: 8095614--8095698 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
8095604 AAAGCTTAAT
* *
8095614 TGAAAAACTTAATGATTAAAAACTTGA
1 TGAAAAACTTTATGA--AAAGACTTGA
*
8095641 TGGAAAACTTTATGAAAAGACTTGA
1 TGAAAAACTTTATGAAAAGACTTGA
8095666 TGAAAAAC-TTA--AAAAGAACTTGA
1 TGAAAAACTTTATGAAAAG-ACTTGA
*
8095689 TGCAAAACTT
1 TGAAAAACTT
8095699 AATAACAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
22 5 0.10
23 13 0.25
24 4 0.08
25 16 0.31
27 13 0.25
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.27
Consensus pattern (25 bp):
TGAAAAACTTTATGAAAAGACTTGA
Found at i:8095699 original size:23 final size:23
Alignment explanation
Indices: 8095634--8095700 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 23
8095624 AATGATTAAA
*
8095634 AACTTGATGGAAAACTTTATGAAAAG
1 AACTTGATGAAAAAC-TTA--AAAAG
8095660 -ACTTGATGAAAAACTTAAAAAG
1 AACTTGATGAAAAACTTAAAAAG
*
8095682 AACTTGATGCAAAACTTAA
1 AACTTGATGAAAAACTTAA
8095701 TAACAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 3 0.08
25 13 0.34
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.25
Consensus pattern (23 bp):
AACTTGATGAAAAACTTAAAAAG
Found at i:8102020 original size:11 final size:11
Alignment explanation
Indices: 8102006--8102035 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8101996 ATTGTTTGAT
8102006 TTTTACATAAA
1 TTTTACATAAA
*
8102017 TTTTACAGAAA
1 TTTTACATAAA
8102028 TTTTACAT
1 TTTTACAT
8102036 TCTTCTATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (11 bp):
TTTTACATAAA
Found at i:8102597 original size:150 final size:150
Alignment explanation
Indices: 8102326--8102624 Score: 571
Period size: 150 Copynumber: 2.0 Consensus size: 150
8102316 AAGCCCATTA
8102326 CCCTAACCCACTAGCTAGAGGTGATCATGAGCCGGGCCGGGTTCGGGCCGAGCCCATAAAAAAAT
1 CCCTAACCCACTAGCTAGAGGTGATCATGAGCCGGGCCGGGTTCGGGCCGAGCCCATAAAAAAAT
8102391 TCCGGCCCGACTCGAAATGTGGGCCTAAGATTTTGCCCAGGCCCGGCCCGGGAAAAAATCATAAG
66 TCCGGCCCGACTCGAAATGTGGGCCTAAGATTTTGCCCAGGCCCGGCCCGGGAAAAAATCATAAG
* *
8102456 CCCGGCCCGGTCCGGCCCGG
131 CCCGGCCCGGCCCAGCCCGG
8102476 CCCTAACCCACTAGCTAGAGGTGATCATGAGCCGGGCCGGGTTCGGGCCGAGCCCATAAAAAAAT
1 CCCTAACCCACTAGCTAGAGGTGATCATGAGCCGGGCCGGGTTCGGGCCGAGCCCATAAAAAAAT
*
8102541 TTCGGCCCGACTCGAAATGTGGGCCTAAGATTTTGCCCAGGCCCGGCCCGGGAAAAAATCATAAG
66 TCCGGCCCGACTCGAAATGTGGGCCTAAGATTTTGCCCAGGCCCGGCCCGGGAAAAAATCATAAG
8102606 CCCGGCCCGGCCCAGCCCG
131 CCCGGCCCGGCCCAGCCCG
8102625 ACCCGGCCCA
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 146 1.00
ACGTcount: A:0.24, C:0.33, G:0.29, T:0.15
Consensus pattern (150 bp):
CCCTAACCCACTAGCTAGAGGTGATCATGAGCCGGGCCGGGTTCGGGCCGAGCCCATAAAAAAAT
TCCGGCCCGACTCGAAATGTGGGCCTAAGATTTTGCCCAGGCCCGGCCCGGGAAAAAATCATAAG
CCCGGCCCGGCCCAGCCCGG
Found at i:8102624 original size:15 final size:15
Alignment explanation
Indices: 8102604--8102634 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8102594 AAAAATCATA
*
8102604 AGCCCGGCCCGGCCC
1 AGCCCGACCCGGCCC
8102619 AGCCCGACCCGGCCC
1 AGCCCGACCCGGCCC
8102634 A
1 A
8102635 TTTTTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.58, G:0.29, T:0.00
Consensus pattern (15 bp):
AGCCCGACCCGGCCC
Found at i:8102680 original size:12 final size:11
Alignment explanation
Indices: 8102639--8102770 Score: 60
Period size: 11 Copynumber: 12.9 Consensus size: 11
8102629 GGCCCATTTT
8102639 TATTTT-AAAA
1 TATTTTAAAAA
8102649 -ATTTTAAAAA
1 TATTTTAAAAA
**
8102659 -ATTAAAAAAAA
1 TATT-TTAAAAA
8102670 GTATTTTAAAAA
1 -TATTTTAAAAA
8102682 TATTTT--AAA
1 TATTTTAAAAA
8102691 -A--TTAAAAA
1 TATTTTAAAAA
* *
8102699 -AATTAAAAAA
1 TATTTTAAAAA
8102709 GTATTTTAAAAA
1 -TATTTTAAAAA
8102721 TATTTT--AAA
1 TATTTTAAAAA
8102730 -A--TTAAAAA
1 TATTTTAAAAA
**
8102738 -ATTAAAAACAA
1 TATTTTAAA-AA
8102749 GTATTTTAAAAA
1 -TATTTTAAAAA
8102761 TATTTTAAAA
1 TATTTTAAAA
8102771 TTAAAAAAAT
Statistics
Matches: 94, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
6 4 0.04
8 10 0.11
9 11 0.12
10 16 0.17
11 29 0.31
12 15 0.16
13 9 0.10
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:8102680 original size:32 final size:32
Alignment explanation
Indices: 8102639--8102700 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
8102629 GGCCCATTTT
8102639 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAAG
*
8102671 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
8102701 TTAAAAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 25 0.89
33 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (32 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAAG
Found at i:8102707 original size:40 final size:40
Alignment explanation
Indices: 8102639--8102821 Score: 262
Period size: 41 Copynumber: 4.5 Consensus size: 40
8102629 GGCCCATTTT
*
8102639 TATTTTAAAAATTTTAAAAAATTAAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAA-TTAAAAAAATT-AAAAAAAGTATTTTAAAAA
8102682 TATTTTAAAATTAAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
8102721 TATTTTAAAATT-AAAAAATTAAAAACAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAA-AAGTATTTTAAAAA
* * *
8102761 TATTTTAAAATTAAAAAAATATTAAAAAAGTATGTAAAAAA
1 TATTTTAAAATTAAAAAAAT-TAAAAAAAGTATTTTAAAAA
*
8102802 TATTTTAAAATTTAAAAAAT
1 TATTTTAAAATTAAAAAAAT
8102822 AAATATATTT
Statistics
Matches: 131, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
38 8 0.06
39 34 0.26
40 26 0.20
41 48 0.37
42 9 0.07
43 6 0.05
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:8102740 original size:79 final size:82
Alignment explanation
Indices: 8102639--8102821 Score: 300
Period size: 79 Copynumber: 2.2 Consensus size: 82
8102629 GGCCCATTTT
8102639 TATTTTAAAAATTTTAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAATT-AAAAAA-AT
1 TATTTT-AAAA-TTTAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATAT
* *
8102702 TAAAAAAGTATTTTAAAAA
64 TAAAAAAGTATGTAAAAAA
*
8102721 TATTTTAAAA-TTAAAAAATTAAAAACAAGTATTTTAAAAATATTTTAAAATTAAAAAAATATTA
1 TATTTTAAAATTTAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATATTA
8102785 AAAAAGTATGTAAAAAA
66 AAAAAGTATGTAAAAAA
8102802 TATTTTAAAATTTAAAAAAT
1 TATTTTAAAATTTAAAAAAT
8102822 AAATATATTT
Statistics
Matches: 95, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
79 41 0.43
80 6 0.06
81 33 0.35
82 15 0.16
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (82 bp):
TATTTTAAAATTTAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATATTA
AAAAAGTATGTAAAAAA
Found at i:8102776 original size:17 final size:17
Alignment explanation
Indices: 8102754--8102787 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8102744 AACAAGTATT
* *
8102754 TTAAAAATATTTTAAAA
1 TTAAAAAAATATTAAAA
8102771 TTAAAAAAATATTAAAA
1 TTAAAAAAATATTAAAA
8102788 AAGTATGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATATTAAAA
Found at i:8102780 original size:19 final size:19
Alignment explanation
Indices: 8102751--8102822 Score: 81
Period size: 19 Copynumber: 3.6 Consensus size: 19
8102741 AAAAACAAGT
*
8102751 ATTTTAAAAATATTTTAAA
1 ATTTAAAAAATATTTTAAA
* **
8102770 ATTAAAAAAATATTAAAAA
1 ATTTAAAAAATATTTTAAA
8102789 AGTATGTAAAAAATATTTTAAA
1 A-T-T-TAAAAAATATTTTAAA
8102811 ATTTAAAAAATA
1 ATTTAAAAAATA
8102823 AATATATTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 25 0.58
20 2 0.05
21 2 0.05
22 14 0.33
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
ATTTAAAAAATATTTTAAA
Found at i:8102822 original size:41 final size:41
Alignment explanation
Indices: 8102639--8102822 Score: 252
Period size: 39 Copynumber: 4.5 Consensus size: 41
8102629 GGCCCATTTT
8102639 TATTTTAAAAATTTTAAAAAAT-TAAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAA-TTTAAAAAATAT-AAAAAAAGTATTTTAAAAA
*
8102682 TATTTTAAAA-TTAAAAAA-ATTAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAAATATAAAAAAAGTATTTTAAAAA
8102721 TATTTTAAAA-TTAAAAAAT-TAAAAACAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAAATATAAAAA-AAGTATTTTAAAAA
* * * *
8102761 TATTTTAAAATTAAAAAAATATTAAAAAAGTATGTAAAAAA
1 TATTTTAAAATTTAAAAAATATAAAAAAAGTATTTTAAAAA
8102802 TATTTTAAAATTTAAAAAATA
1 TATTTTAAAATTTAAAAAATA
8102823 AATATATTTA
Statistics
Matches: 129, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
39 41 0.32
40 33 0.26
41 40 0.31
42 9 0.07
43 6 0.05
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (41 bp):
TATTTTAAAATTTAAAAAATATAAAAAAAGTATTTTAAAAA
Found at i:8104234 original size:23 final size:25
Alignment explanation
Indices: 8104203--8104261 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 25
8104193 CTAATGCTAG
*
8104203 TTAATATTTAATC-TTAACATTGTT
1 TTAATATTTAATCATTAACATTATT
**
8104227 TTAA-ATTT-ATCATTAGTATTATT
1 TTAATATTTAATCATTAACATTATT
8104250 TTAATATTTAAT
1 TTAATATTTAAT
8104262 ATACTATCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 3 0.10
23 16 0.55
24 8 0.28
25 2 0.07
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (25 bp):
TTAATATTTAATCATTAACATTATT
Found at i:8104286 original size:23 final size:24
Alignment explanation
Indices: 8104225--8104349 Score: 100
Period size: 24 Copynumber: 5.3 Consensus size: 24
8104215 CTTAACATTG
* *
8104225 TTTTAAATTTATCAT-TAGTATTA
1 TTTTAAATTTATCATATACTATAA
*
8104248 TTTTAATATTTA--ATATACTATCA
1 TTTTAA-ATTTATCATATACTATAA
8104271 TTTTAAA-TTATCATATA-TCATAA
1 TTTTAAATTTATCATATACT-ATAA
* *
8104294 TTTAAAATTTATCGTATACTATAA
1 TTTTAAATTTATCATATACTATAA
* * * *
8104318 TTTAAAACTTATCCA-ATATTATTA
1 TTTTAAATTTAT-CATATACTATAA
8104342 TTTTAAAT
1 TTTTAAAT
8104350 GTATTATGTA
Statistics
Matches: 83, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
21 3 0.04
22 4 0.05
23 32 0.39
24 42 0.51
25 2 0.02
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTTAAATTTATCATATACTATAA
Found at i:8104311 original size:24 final size:23
Alignment explanation
Indices: 8104226--8104330 Score: 81
Period size: 23 Copynumber: 4.5 Consensus size: 23
8104216 TTAACATTGT
* * *
8104226 TTTAAATTTATCAT-TAGTATTAT
1 TTTAAAATTATCATATACTA-TAA
* * *
8104249 TTTAATATT-TAATATACTATCA
1 TTTAAAATTATCATATACTATAA
*
8104271 TTTTAAATTATCATATA-TCATAA
1 TTTAAAATTATCATATACT-ATAA
*
8104294 TTTAAAATTTATCGTATACTATAA
1 TTTAAAA-TTATCATATACTATAA
8104318 TTTAAAACTTATC
1 TTTAAAA-TTATC
8104331 CAATATTATT
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
22 12 0.19
23 26 0.41
24 25 0.39
25 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTAAAATTATCATATACTATAA
Found at i:8104361 original size:24 final size:24
Alignment explanation
Indices: 8104334--8104414 Score: 76
Period size: 24 Copynumber: 3.2 Consensus size: 24
8104324 ACTTATCCAA
8104334 TATTATTATTTTAAATGTATTATG
1 TATTATTATTTTAAATGTATTATG
* *
8104358 TATTCA-TATTTAAAAAAAAGATATTATG
1 TATT-ATTATTT---TAAATG-TATTATG
8104386 TATTATTATTTTAAAAT-TATTATG
1 TATTATTATTTT-AAATGTATTATG
8104410 TATTA
1 TATTA
8104415 AATATATCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
24 21 0.46
25 1 0.02
26 3 0.07
27 5 0.11
28 16 0.35
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (24 bp):
TATTATTATTTTAAATGTATTATG
Found at i:8114391 original size:44 final size:44
Alignment explanation
Indices: 8114277--8114375 Score: 130
Period size: 44 Copynumber: 2.2 Consensus size: 44
8114267 CAACTTTAGA
* *
8114277 GAGATAAGATCTATT-ACTTTAATCCT-CTCCACTAAAACCTCAGG
1 GAGATAAGAT-TATTGACTTCAAT-CTGCTCCACTGAAACCTCAGG
* *
8114321 GAGATAGGATTATTGACTTCAATCTGCTCCACTGCAACCTCAGG
1 GAGATAAGATTATTGACTTCAATCTGCTCCACTGAAACCTCAGG
8114365 GAGATAAGATT
1 GAGATAAGATT
8114376 TGCTTCTTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 6 0.12
44 42 0.88
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (44 bp):
GAGATAAGATTATTGACTTCAATCTGCTCCACTGAAACCTCAGG
Found at i:8114398 original size:44 final size:44
Alignment explanation
Indices: 8114263--8114375 Score: 113
Period size: 44 Copynumber: 2.6 Consensus size: 44
8114253 GATATGCTCT
* * * * *
8114263 ACTGCAACTTTAGAGAGATAAGATCTATT-ACTTTAATCCT-CTCC
1 ACTGCAACCTCAGGGAGATAAGAT-TATTGACTTCAAT-CTGCCCC
** * *
8114307 ACTAAAACCTCAGGGAGATAGGATTATTGACTTCAATCTGCTCC
1 ACTGCAACCTCAGGGAGATAAGATTATTGACTTCAATCTGCCCC
8114351 ACTGCAACCTCAGGGAGATAAGATT
1 ACTGCAACCTCAGGGAGATAAGATT
8114376 TGCTTCTTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 6 0.11
44 51 0.89
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (44 bp):
ACTGCAACCTCAGGGAGATAAGATTATTGACTTCAATCTGCCCC
Found at i:8119001 original size:113 final size:114
Alignment explanation
Indices: 8118631--8119100 Score: 561
Period size: 114 Copynumber: 4.1 Consensus size: 114
8118621 TAAAGAAAGT
** * * * * * **
8118631 ATTAGTGGCGCTTATTTAAAATCACCGCTAAAGCATAGAATTAGGGGCGAGTCGCAAAAAGCGCC
1 ATTAGTGGCGCTTATACAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
* *
8118696 GCAATACATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTAGC
66 GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGC
*
8118745 ATTAGTGGCGCTTATACAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
1 ATTAGTGGCGCTTATACAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
* * *
8118810 GCAATATTTCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGG
66 GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGC
* * * ** * *
8118859 ATTAGTGGCGCTTAT-CGGAAAATGCCGCTAAAGCATAGTATTAGCAGCGCTTATTGTAAAGCGC
1 ATTAGTGGCGCTTATAC-AAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGC
* * * *
8118923 CGCAA-A-ATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTACC
65 CGCAATATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGC
* ** * * *
8118972 AGTAGTGGCGCTTATATTAAAACGTCGCTAAATCATAGTATTAGCGGTGAGTAGTGAAAAGCGCC
1 ATTAGTGGCGCTTATACAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
* * * *
8119037 GCAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGC
66 GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTA-GC
8119087 -TTAGTGGCGCTTAT
1 ATTAGTGGCGCTTAT
8119101 TGGAAAATGC
Statistics
Matches: 300, Mismatches: 50, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
112 17 0.06
113 76 0.25
114 189 0.63
115 18 0.06
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (114 bp):
ATTAGTGGCGCTTATACAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGC
Found at i:8119027 original size:227 final size:228
Alignment explanation
Indices: 8118688--8119118 Score: 686
Period size: 227 Copynumber: 1.9 Consensus size: 228
8118678 CGAGTCGCAA
* * *
8118688 AAAGCGCCGCAATACATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTAGCATTAGTGG
1 AAAGCGCCGCAATACATATTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTACCAGTAGTGG
*
8118753 CGCTTATACAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAATATT
66 CGCTTATACAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAAGATT
8118818 TCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTATCGGAAAATG
131 TCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTATCGGAAAATG
*
8118883 CCGCTAAAGCATAGTATTAGCAGCGCTTATTGT
196 CCGCAAAAGCATAGTATTAGCAGCGCTTATTGT
* * *
8118916 AAAGCGCCGCAA-A-ATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTACCAGTAGTG
1 AAAGCGCCGCAATACATATTAACCAAAACGCAGAG-TTTGGTCTTGAGGTACACTACCAGTAGTG
** * ** *
8118979 GCGCTTATATTAAAACGTCGCTAAATCATAGTATTAGCGGTGAGTAGTGAAAAGCGCCGCAAGAT
65 GCGCTTATACAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAAGAT
* * *
8119044 TTCTTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGCTTAGTGGCGCTTATTGGAAAAT
130 TTCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTATCGGAAAAT
8119109 GCCGCAAAAG
195 GCCGCAAAAG
8119119 ATTAACCAAA
Statistics
Matches: 185, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
226 18 0.10
227 155 0.84
228 12 0.06
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (228 bp):
AAAGCGCCGCAATACATATTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTACCAGTAGTGG
CGCTTATACAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAAGATT
TCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTATCGGAAAATG
CCGCAAAAGCATAGTATTAGCAGCGCTTATTGT
Found at i:8119187 original size:74 final size:73
Alignment explanation
Indices: 8119047--8119192 Score: 179
Period size: 74 Copynumber: 2.0 Consensus size: 73
8119037 GCAAGATTTC
** * *
8119047 TTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGCTTAGTGGCGCTTATTGGAAAATGCC
1 TTAACCAAAACGCAGAGTTTGGTCTTAAGGTATAGTAGGCTTAGTGGCGCTTATTGGAAAACGCC
8119112 GCAAAAGA
66 GCAAAAGA
* * *
8119120 TTAACCAAAACGCAGTGCTTTGGTCTTAATGTATAGTA-GCATTAGTGGCGCTTATAT-TAAAAC
1 TTAACCAAAACGCAGAG-TTTGGTCTTAAGGTATAGTAGGC-TTAGTGGCGCTTAT-TGGAAAAC
*
8119183 GCCGCTAAAG
63 GCCGCAAAAG
8119193 TATAGTATTA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
73 18 0.29
74 43 0.69
75 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (73 bp):
TTAACCAAAACGCAGAGTTTGGTCTTAAGGTATAGTAGGCTTAGTGGCGCTTATTGGAAAACGCC
GCAAAAGA
Found at i:8119222 original size:188 final size:188
Alignment explanation
Indices: 8118905--8119306 Score: 590
Period size: 188 Copynumber: 2.1 Consensus size: 188
8118895 AGTATTAGCA
* * * *
8118905 GCGCTTATTGTAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTA
1 GCGCTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGCAGCGCTTTGGTCTTAATGTATACTA
* * *
8118970 CCAGTAGTGGCGCTTATATTAAAACGTCGCTAAATCATAGTATTAGCGGTGAGTAGTGAAAAGCG
66 CCAGTAGTGGCGCTTATATTAAAACGCCGCTAAATCATAGTATTAGCGGCGAGTACTGAAAAGCG
* * * * *
8119035 CCGCAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGCTTAGTG
131 CCCCAAGATTTCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTG
* * *
8119093 GCGCTTATTGGAAAATGCCGCAAAAGATTAACCAAAACGCAGTGCTTTGGTCTTAATGTATAGTA
1 GCGCTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGCAGCGCTTTGGTCTTAATGTATACTA
* *
8119158 GCATTAGTGGCGCTTATATTAAAACGCCGCTAAAGT-ATAGTATTAGCGGCGAGTACTGAAAAGC
66 CCAGTAGTGGCGCTTATATTAAAACGCCGCTAAA-TCATAGTATTAGCGGCGAGTACTGAAAAGC
* *
8119222 GCCCCAATATTTCTTAACAAAAATGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTG
130 GCCCCAAGATTTCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTG
* * *
8119281 GCGTTTATTTGAAAACGCCGCTAAAG
1 GCGCTTATTGGAAAACGCCGCAAAAG
8119307 CAAAGTATTA
Statistics
Matches: 190, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
188 189 0.99
189 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (188 bp):
GCGCTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGCAGCGCTTTGGTCTTAATGTATACTA
CCAGTAGTGGCGCTTATATTAAAACGCCGCTAAATCATAGTATTAGCGGCGAGTACTGAAAAGCG
CCCCAAGATTTCTTAACAAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTG
Found at i:8119414 original size:113 final size:112
Alignment explanation
Indices: 8119087--8119436 Score: 382
Period size: 114 Copynumber: 3.1 Consensus size: 112
8119077 TATATTAGGC
* * * * *
8119087 TTAGTGGCGCTTATTGGAAAA-TGCCGCAAAAGATTAACCAAAACGCAGTGCTTTGGTCTTAATG
1 TTAGCGGCGCTTATT-GAAAAGCGCCGCAAAATATTAACCAAAACGCAGAGCTTTGGTCTTGATG
* *
8119151 TATAGTAGCATTAGTGGCGCTTATATTAAAACGCCGCTAAAGTATAGTA
65 TATACTAGCATTAGTGGCGCTTAT-TTAAAACGCCGCTAAAGCATAGTA
** * * * * * * *
8119200 TTAGCGGCGAGTACTGAAAAGCGCCCCAATATTTCTTAACAAAAATGCAGAG-TTTGGTCTTGAG
1 TTAGCGGCGCTTATTGAAAAGCGCCGCAA-A-ATATTAACCAAAACGCAGAGCTTTGGTCTTGAT
* * * * *
8119264 GTACATTAGGATTAGTGGCGTTTATTTGAAAACGCCGCTAAAGCAAAGTA
64 GTATACTAGCATTAGTGGCGCTTATTT-AAAACGCCGCTAAAGCATAGTA
* *
8119314 TTAGCGGCGCTTATTGTAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGT
1 TTAGCGGCGCTTATTGAAAAGCGCCGCAAAATATTAACCAAAACGCAGAGCTTTGGTCTTGATGT
* * *
8119379 ATACTAGCAGTT-GTGGCGCTTATTGTTAAACGCCGCTAAAACATATTA
66 ATACTAGCA-TTAGTGGCGCTTATT-TAAAACGCCGCTAAAGCATAGTA
8119427 TTAGCGGCGC
1 TTAGCGGCGC
8119437 GTTGTGGGAA
Statistics
Matches: 191, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
112 20 0.10
113 78 0.41
114 79 0.41
115 14 0.07
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (112 bp):
TTAGCGGCGCTTATTGAAAAGCGCCGCAAAATATTAACCAAAACGCAGAGCTTTGGTCTTGATGT
ATACTAGCATTAGTGGCGCTTATTTAAAACGCCGCTAAAGCATAGTA
Found at i:8119475 original size:17 final size:18
Alignment explanation
Indices: 8119453--8119520 Score: 70
Period size: 17 Copynumber: 3.7 Consensus size: 18
8119443 GGAAATATGA
8119453 TATTATATAATGTT-TAT
1 TATTATATAATGTTATAT
8119470 TATTATATAAT-TTATGTAGTT
1 TATTATATAATGTTA--TA--T
*
8119491 TATTATATAAT-TTATGT
1 TATTATATAATGTTATAT
8119508 TATTATATAATGT
1 TATTATATAATGT
8119521 AGGAAATATT
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
16 2 0.05
17 23 0.52
18 1 0.02
19 3 0.07
21 15 0.34
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (18 bp):
TATTATATAATGTTATAT
Found at i:8119486 original size:21 final size:21
Alignment explanation
Indices: 8119462--8119513 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
8119452 ATATTATATA
8119462 ATGTTTATTATTATATAATTT
1 ATGTTTATTATTATATAATTT
*
8119483 ATGTAGT-TTATTATATAATTT
1 ATGT-TTATTATTATATAATTT
8119504 ATG-TTATTAT
1 ATGTTTATTAT
8119514 ATAATGTAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 4 0.15
21 21 0.78
22 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (21 bp):
ATGTTTATTATTATATAATTT
Found at i:8119496 original size:38 final size:39
Alignment explanation
Indices: 8119447--8119552 Score: 119
Period size: 38 Copynumber: 2.7 Consensus size: 39
8119437 GTTGTGGGAA
* * *
8119447 ATATGATATTATATAATGTTTATTATTATATAATTTATG
1 ATATTATATTATATAATGTTTATTATTATATAATGTAGG
*
8119486 -TAGTT-TATTATATAAT-TTATGTTATTATATAATGTAGG
1 ATA-TTATATTATATAATGTT-TATTATTATATAATGTAGG
8119524 AAATATTATATTATATAATGTTTATTATT
1 --ATATTATATTATATAATGTTTATTATT
8119553 TTTGAATTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
37 2 0.04
38 29 0.53
39 1 0.02
40 2 0.04
41 19 0.35
42 2 0.04
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (39 bp):
ATATTATATTATATAATGTTTATTATTATATAATGTAGG
Found at i:8120217 original size:7 final size:8
Alignment explanation
Indices: 8120200--8120230 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
8120190 TATGTTTATT
8120200 AAAAATAA
1 AAAAATAA
8120208 AAAAATAA
1 AAAAATAA
8120216 AAAAATAA
1 AAAAATAA
8120224 AAAAATA
1 AAAAATA
8120231 TTGATACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:8135922 original size:21 final size:21
Alignment explanation
Indices: 8135897--8135940 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8135887 TTTTGTTACA
8135897 ATGGCTTCTACAGATTCATCC
1 ATGGCTTCTACAGATTCATCC
8135918 ATGGCTTCTACAGATTCATCC
1 ATGGCTTCTACAGATTCATCC
8135939 AT
1 AT
8135941 TCTTTGGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (21 bp):
ATGGCTTCTACAGATTCATCC
Found at i:8138997 original size:26 final size:26
Alignment explanation
Indices: 8138956--8139008 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8138946 AGTTCTTCAT
8138956 TGCTTTTGAAAAGTGCTGTGGAAAAG
1 TGCTTTTGAAAAGTGCTGTGGAAAAG
* * * *
8138982 TGCTTTTGAGATGTGCTTTTGAAAAG
1 TGCTTTTGAAAAGTGCTGTGGAAAAG
8139008 T
1 T
8139009 TTAGTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.08, G:0.28, T:0.38
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTGTGGAAAAG
Found at i:8139671 original size:20 final size:21
Alignment explanation
Indices: 8139625--8139673 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
8139615 CAAATACATG
*
8139625 TAATATTTTACTTTGTTAGGT
1 TAATATTTTACTATGTTAGGT
* *
8139646 TTATATTTT-CTATGTTATGT
1 TAATATTTTACTATGTTAGGT
8139666 TAATATTT
1 TAATATTT
8139674 AATATGGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.24, C:0.04, G:0.10, T:0.61
Consensus pattern (21 bp):
TAATATTTTACTATGTTAGGT
Found at i:8149072 original size:18 final size:18
Alignment explanation
Indices: 8149046--8149080 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8149036 ATATGGGTCG
*
8149046 GGCTTGAGCTTGAAAATA
1 GGCTCGAGCTTGAAAATA
8149064 GGCTCGAGCTTGAAAAT
1 GGCTCGAGCTTGAAAAT
8149081 TCAAGCCTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (18 bp):
GGCTCGAGCTTGAAAATA
Found at i:8156458 original size:30 final size:30
Alignment explanation
Indices: 8156425--8156531 Score: 130
Period size: 29 Copynumber: 3.6 Consensus size: 30
8156415 AATATAAAAT
8156425 TTAAAATTTACATTTTGACCACCT-AACTTT-
1 TTAAAA-TTACATTTTGA-CACCTAAACTTTC
* * *
8156455 TTAAAATTATATTTTGACATCTCAACTTTC
1 TTAAAATTACATTTTGACACCTAAACTTTC
* *
8156485 TTAAAATTATATTTTGAC-CCTAAATTTTC
1 TTAAAATTACATTTTGACACCTAAACTTTC
8156514 TTAAAATTACATTTTGAC
1 TTAAAATTACATTTTGAC
8156532 CTCAAAAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
28 4 0.06
29 41 0.59
30 24 0.35
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.46
Consensus pattern (30 bp):
TTAAAATTACATTTTGACACCTAAACTTTC
Found at i:8157163 original size:6 final size:6
Alignment explanation
Indices: 8157148--8157225 Score: 54
Period size: 6 Copynumber: 12.5 Consensus size: 6
8157138 GCTAGGGTTT
* *
8157148 GAAAAA -AAAAA GAAAAA GAAAAA GGAAGAA GAAAGAGA GAGAAAA -CAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA -GAAAAA GAAA-A-A GA-AAAA GAAAAA
*
8157198 GAAAGAA -AGAAAA TAAAAA GAAAAA GAA
1 GAAA-AA GA-AAAA GAAAAA GAAAAA GAA
8157226 GAGCAAAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
5 9 0.16
6 31 0.53
7 12 0.21
8 4 0.07
9 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.21, T:0.01
Consensus pattern (6 bp):
GAAAAA
Found at i:8157179 original size:13 final size:13
Alignment explanation
Indices: 8157149--8157225 Score: 50
Period size: 13 Copynumber: 5.5 Consensus size: 13
8157139 CTAGGGTTTG
8157149 AAAA-AAAAAAGA
1 AAAAGAAAAAAGA
*
8157161 AAAAGAAAAAGGA
1 AAAAGAAAAAAGA
*
8157174 AGAAGAAAGAGAGAGA
1 AAAAGAAA-A-A-AGA
8157190 AAACA-AAAGAAAGA
1 AAA-AGAAA-AAAGA
*
8157204 AAGAAAATAAAAAGA
1 AA-AAGA-AAAAAGA
8157219 AAAAGAA
1 AAAAGAA
8157226 GAGCAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
12 4 0.08
13 15 0.29
14 10 0.19
15 11 0.21
16 11 0.21
17 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.19, T:0.01
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:8157201 original size:20 final size:19
Alignment explanation
Indices: 8157176--8157220 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
8157166 AAAAAGGAAG
*
8157176 AAGAAAGAGAGAGAAAA-CAA
1 AAGAAAGA-A-AGAAAATAAA
8157196 AAGAAAGAAAGAAAATAAA
1 AAGAAAGAAAGAAAATAAA
8157215 AAGAAA
1 AAGAAA
8157221 AAGAAGAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.26
19 9 0.39
20 8 0.35
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (19 bp):
AAGAAAGAAAGAAAATAAA
Found at i:8157216 original size:24 final size:25
Alignment explanation
Indices: 8157152--8157241 Score: 76
Period size: 25 Copynumber: 3.5 Consensus size: 25
8157142 GGGTTTGAAA
*
8157152 AAAAAAAGAAAAAGAAAAAGGAAGAAG
1 AAAAAAATAAAAAGAAAAA-GAAG-AG
* * * *
8157179 AAAGAGAGAGAAAA-CAAAAGAA-AG
1 AAAAAAATA-AAAAGAAAAAGAAGAG
8157203 AAAGAAAATAAAAAGAAAAAGAAGAG
1 AAA-AAAATAAAAAGAAAAAGAAGAG
*
8157229 CAAAAAATAAAAA
1 AAAAAAATAAAAA
8157242 TATACAGTCG
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
24 9 0.18
25 20 0.39
26 7 0.14
27 11 0.22
28 4 0.08
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.02
Consensus pattern (25 bp):
AAAAAAATAAAAAGAAAAAGAAGAG
Found at i:8157235 original size:20 final size:20
Alignment explanation
Indices: 8157149--8157235 Score: 63
Period size: 23 Copynumber: 4.2 Consensus size: 20
8157139 CTAGGGTTTG
*
8157149 AAAAA-AAAAAGAAAAAGAAA
1 AAAAAGAAAAAG-AAGAGAAA
*
8157169 AAGGAAGAAGAAAGAGAGAGAAA
1 AA-AAAGAA-AAAGA-AGAGAAA
*
8157192 ACAAAAGAAAGA-AAGA-AAA
1 A-AAAAGAAAAAGAAGAGAAA
8157211 TAAAAAGAAAAAGAAGAGCAAA
1 -AAAAAGAAAAAGAAGAG-AAA
8157233 AAA
1 AAA
8157236 TAAAAATATA
Statistics
Matches: 53, Mismatches: 5, Indels: 17
0.71 0.07 0.23
Matches are distributed among these distances:
19 12 0.23
20 10 0.19
21 6 0.11
22 8 0.15
23 16 0.30
24 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.01
Consensus pattern (20 bp):
AAAAAGAAAAAGAAGAGAAA
Found at i:8157410 original size:19 final size:21
Alignment explanation
Indices: 8157383--8157422 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
8157373 AGTCCTTAAC
*
8157383 AGCATGCCAG-CA-CCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
8157402 AGCAGGCCAGACAGCCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
8157423 GTAGGCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (21 bp):
AGCAGGCCAGACAGCCCAGCA
Found at i:8157472 original size:13 final size:13
Alignment explanation
Indices: 8157454--8157478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8157444 TGTCAGCAGA
8157454 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
8157467 AAAAGAAAAAAA
1 AAAAGAAAAAAA
8157479 ACAACAGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:8157639 original size:15 final size:14
Alignment explanation
Indices: 8157598--8157648 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
8157588 AACAGTAGAA
8157598 AAAAAAAGAAAAA-
1 AAAAAAAGAAAAAG
* *
8157611 AGAAAAAGGGAAAAG
1 A-AAAAAAGAAAAAG
8157626 AAAGAAAAGAAAAAG
1 AAA-AAAAGAAAAAG
8157641 AAAAAAAG
1 AAAAAAAG
8157649 CTCAAGTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 1 0.03
14 17 0.55
15 13 0.42
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:8163512 original size:17 final size:17
Alignment explanation
Indices: 8163492--8163525 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8163482 ATTATTAAGA
8163492 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
8163509 ATTTTAATTAAATATAT
1 ATTTTAATTAAATATAT
8163526 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:8165387 original size:54 final size:54
Alignment explanation
Indices: 8165300--8165407 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
8165290 TTCGTCACTA
* * * *
8165300 ATTTAAGATTGAAATCCCTGTTTCTAATCAAATTCGATTTAAGATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
* *
8165354 ATTTAAGATTAAAATACCT-TTTTTAAATAAAATTTGATTTAAAATTATTAAGTG
1 ATTTAAGATTAAAATACCTGTTTCT-AATAAAATTCGATTTAAAATTATTAAGTG
8165408 TATAAATCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 4 0.09
54 43 0.91
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (54 bp):
ATTTAAGATTAAAATACCTGTTTCTAATAAAATTCGATTTAAAATTATTAAGTG
Found at i:8174412 original size:24 final size:22
Alignment explanation
Indices: 8174385--8174428 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
8174375 AAAATTCAAA
8174385 ATTTTTCTTTCCATTTATTAAAAG
1 ATTTTTC--TCCATTTATTAAAAG
*
8174409 ATTTTTCTGCATTTATTAAA
1 ATTTTTCTCCATTTATTAAA
8174429 TCTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
24 7 0.37
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.55
Consensus pattern (22 bp):
ATTTTTCTCCATTTATTAAAAG
Found at i:8176955 original size:34 final size:32
Alignment explanation
Indices: 8176915--8176996 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 32
8176905 GATCCAAAGT
*
8176915 TTTATGTAAGTTATGATATGATATAT-ATTTATGTA
1 TTTATGTAAGTTATGATAAG-T-TATGA--TATGTA
8176950 -TTATGTAAGTTATG-TAAGTTATGATATGTA
1 TTTATGTAAGTTATGATAAGTTATGATATGTA
8176980 TTTATGTAAGTTATGAT
1 TTTATGTAAGTTATGAT
8176997 CTAAAGTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
30 6 0.14
31 17 0.40
32 3 0.07
33 3 0.07
34 14 0.33
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (32 bp):
TTTATGTAAGTTATGATAAGTTATGATATGTA
Found at i:8186101 original size:54 final size:54
Alignment explanation
Indices: 8185999--8186106 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
8185989 TGGATTTATA
* * * *
8185999 CACTTAATAATTTTAAATCAAATTTTATTTAAAAAAGGTATTTTAATCTTAAAT
1 CACTTAATAATCTTAAATCAAATTTGATTTAAAAAAGGGATTTCAATCTTAAAT
* *
8186053 CACTTAATAATCTTAAATCGAATTTGA-TTAGAAACAGGGATTTCAATCTTAAAT
1 CACTTAATAATCTTAAATCAAATTTGATTTA-AAAAAGGGATTTCAATCTTAAAT
8186107 TAGTGACGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.06
54 44 0.94
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (54 bp):
CACTTAATAATCTTAAATCAAATTTGATTTAAAAAAGGGATTTCAATCTTAAAT
Found at i:8187857 original size:17 final size:17
Alignment explanation
Indices: 8187836--8187869 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8187826 TTATTATTAA
8187836 ATAT-ATTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8187853 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8187870 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8193608 original size:14 final size:15
Alignment explanation
Indices: 8193591--8193627 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
8193581 CTACTTGAGC
8193591 TCTTTTTTTC-TTTT
1 TCTTTTTTTCTTTTT
8193605 TC-TTTTTTCTTTTT
1 TCTTTTTTTCTTTTT
8193619 TCTTTTTTT
1 TCTTTTTTT
8193628 TTCTACTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.33
14 8 0.38
15 6 0.29
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TCTTTTTTTCTTTTT
Found at i:8193611 original size:7 final size:7
Alignment explanation
Indices: 8193594--8193626 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
8193584 CTTGAGCTCT
8193594 TTTTTTC
1 TTTTTTC
8193601 -TTTTTC
1 TTTTTTC
8193607 TTTTTTC
1 TTTTTTC
8193614 TTTTTTC
1 TTTTTTC
8193621 TTTTTT
1 TTTTTT
8193627 TTTCTACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:8193765 original size:13 final size:13
Alignment explanation
Indices: 8193747--8193771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8193737 CTGCTGTTGT
8193747 TTTTTTTCTTTTC
1 TTTTTTTCTTTTC
8193760 TTTTTTTCTTTT
1 TTTTTTTCTTTT
8193772 TTCTGCTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTCTTTTC
Found at i:8193844 original size:19 final size:21
Alignment explanation
Indices: 8193805--8193844 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
8193795 GGATGCCTAC
*
8193805 TGCTGGGCTGTCTGGCCTGCT
1 TGCTGGGCTGTCTGGCATGCT
8193826 TGCTGGG-TG-CTGGCATGCT
1 TGCTGGGCTGTCTGGCATGCT
8193845 GTTAAGGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.03, C:0.25, G:0.40, T:0.33
Consensus pattern (21 bp):
TGCTGGGCTGTCTGGCATGCT
Found at i:8194015 original size:6 final size:6
Alignment explanation
Indices: 8194006--8194079 Score: 53
Period size: 6 Copynumber: 11.7 Consensus size: 6
8193996 TTGCTCTTCT
* * *
8194006 TTTTTC TTTTTA TTTTTC TTTCTTTC TTTTGT- TTTCTCTC TCTTTC TTCTTCC
1 TTTTTC TTTTTC TTTTTC -TT-TTTC TTTT-TC TTT-T-TC TTTTTC TT-TTTC
8194059 TTTTTC TTTTTC TTTTT- TTTT
1 TTTTTC TTTTTC TTTTTC TTTT
8194080 CAAACCCTAG
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
5 4 0.07
6 32 0.58
7 13 0.24
8 6 0.11
ACGTcount: A:0.01, C:0.19, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:8194015 original size:19 final size:20
Alignment explanation
Indices: 8193993--8194035 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
8193983 ATATTTTTAT
*
8193993 TTTTTGCTCTTCTTT-TTTC
1 TTTTTACTCTTCTTTCTTTC
* *
8194012 TTTTTATTTTTCTTTCTTTC
1 TTTTTACTCTTCTTTCTTTC
8194032 TTTT
1 TTTT
8194036 GTTTTCTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTACTCTTCTTTCTTTC
Found at i:8194735 original size:29 final size:30
Alignment explanation
Indices: 8194682--8194800 Score: 118
Period size: 29 Copynumber: 4.0 Consensus size: 30
8194672 TAGAGGACAC
* *
8194682 AAAACTTTTGAGGTCAAAATGTAATTTTAAG
1 AAAA-TTTAGAGGTCAAAATATAATTTTAAG
8194713 AAAATTTAG-GGTCAAAATATAATTTTAAG
1 AAAATTTAGAGGTCAAAATATAATTTTAAG
* * *
8194742 AAAGTTGAGATGTCAAAATATAATTTT-A-
1 AAAATTTAGAGGTCAAAATATAATTTTAAG
* * *
8194770 AAAAGTTAGGTGGTCAAAATGTAAATTTTAA
1 AAAATTTA-GAGGTCAAAATAT-AATTTTAA
8194801 ATTTTATATT
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 5 0.07
29 37 0.51
30 26 0.36
31 5 0.07
ACGTcount: A:0.45, C:0.04, G:0.16, T:0.34
Consensus pattern (30 bp):
AAAATTTAGAGGTCAAAATATAATTTTAAG
Found at i:8196791 original size:14 final size:15
Alignment explanation
Indices: 8196774--8196810 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
8196764 CTACTTGAGC
8196774 TCTTTTTTTC-TTTT
1 TCTTTTTTTCTTTTT
8196788 TC-TTTTTTCTTTTT
1 TCTTTTTTTCTTTTT
8196802 TCTTTTTTT
1 TCTTTTTTT
8196811 TTCTACTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.33
14 8 0.38
15 6 0.29
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TCTTTTTTTCTTTTT
Found at i:8196794 original size:7 final size:7
Alignment explanation
Indices: 8196777--8196809 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
8196767 CTTGAGCTCT
8196777 TTTTTTC
1 TTTTTTC
8196784 -TTTTTC
1 TTTTTTC
8196790 TTTTTTC
1 TTTTTTC
8196797 TTTTTTC
1 TTTTTTC
8196804 TTTTTT
1 TTTTTT
8196810 TTTCTACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:8196948 original size:13 final size:13
Alignment explanation
Indices: 8196930--8196954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8196920 CTGCTGTTGT
8196930 TTTTTTTCTTTTC
1 TTTTTTTCTTTTC
8196943 TTTTTTTCTTTT
1 TTTTTTTCTTTT
8196955 TTCTGCTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTCTTTTC
Found at i:8197027 original size:19 final size:21
Alignment explanation
Indices: 8196988--8197027 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
8196978 GGATGCCTAC
*
8196988 TGCTGGGCTGTCTGGCCTGCT
1 TGCTGGGCTGTCTGGCATGCT
8197009 TGCTGGG-TG-CTGGCATGCT
1 TGCTGGGCTGTCTGGCATGCT
8197028 GTTAAGGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.03, C:0.25, G:0.40, T:0.33
Consensus pattern (21 bp):
TGCTGGGCTGTCTGGCATGCT
Found at i:8197198 original size:6 final size:6
Alignment explanation
Indices: 8197189--8197264 Score: 57
Period size: 6 Copynumber: 12.0 Consensus size: 6
8197179 TTGCTCTTCT
* * *
8197189 TTTTTC TTTTTA TTTTTC TTTCTTTC TTTTGT- TTTCTCTC TCTTTC TTCTTCC
1 TTTTTC TTTTTC TTTTTC -TT-TTTC TTTT-TC TTT-T-TC TTTTTC TT-TTTC
8197242 TTTTTC TTTTTC TTTTT- TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC
8197265 AAACCCTAGC
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.09
6 32 0.57
7 13 0.23
8 6 0.11
ACGTcount: A:0.01, C:0.20, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:8197198 original size:19 final size:20
Alignment explanation
Indices: 8197176--8197218 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
8197166 ATATTTTTAT
*
8197176 TTTTTGCTCTTCTTT-TTTC
1 TTTTTACTCTTCTTTCTTTC
* *
8197195 TTTTTATTTTTCTTTCTTTC
1 TTTTTACTCTTCTTTCTTTC
8197215 TTTT
1 TTTT
8197219 GTTTTCTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTACTCTTCTTTCTTTC
Found at i:8197920 original size:29 final size:30
Alignment explanation
Indices: 8197867--8197985 Score: 109
Period size: 29 Copynumber: 4.0 Consensus size: 30
8197857 TAGAGGACAC
* *
8197867 AAAACTTTTGAGGTCAAAATGTAATTTTAAG
1 AAAA-TTTAGAGGTCAAAATATAATTTTAAG
8197898 AAAATTTAG-GGTCAAAATATAATTTTAAG
1 AAAATTTAGAGGTCAAAATATAATTTTAAG
* * **
8197927 AAAGTTGAGATATCAAAATATAATTTT-A-
1 AAAATTTAGAGGTCAAAATATAATTTTAAG
* * *
8197955 AAAAGTTAGGTGGTCAAAATGTAAATTTTAA
1 AAAATTTA-GAGGTCAAAATAT-AATTTTAA
8197986 ATTTTATATT
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
28 5 0.07
29 36 0.51
30 25 0.35
31 5 0.07
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.34
Consensus pattern (30 bp):
AAAATTTAGAGGTCAAAATATAATTTTAAG
Found at i:8200488 original size:30 final size:29
Alignment explanation
Indices: 8200419--8200529 Score: 127
Period size: 29 Copynumber: 3.8 Consensus size: 29
8200409 AAATACAAAA
* *
8200419 TTTAAAATTTACATTTCGACCAC-CTAACTT
1 TTTAAAA-TTACATTTTGACCTCTC-AACTT
8200449 TTTAAAATTACATTTTGACCTCTCAACTT
1 TTTAAAATTACATTTTGACCTCTCAACTT
* * *
8200478 TCTTAAAATTATATTTTGA-CTCTAAATTTT
1 T-TTAAAATTACATTTTGACCTCTCAA-CTT
8200508 TTTAAAATTACATTTTGACCTC
1 TTTAAAATTACATTTTGACCTC
8200530 AAAAGTTTTG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
29 41 0.58
30 30 0.42
ACGTcount: A:0.32, C:0.18, G:0.04, T:0.46
Consensus pattern (29 bp):
TTTAAAATTACATTTTGACCTCTCAACTT
Found at i:8201163 original size:6 final size:6
Alignment explanation
Indices: 8201148--8201220 Score: 53
Period size: 6 Copynumber: 11.8 Consensus size: 6
8201138 GGTTTGAGAA
* *
8201148 AAAAAG -AAAAG AAAAAGG AAGAAG AAAGAGAG AGAAAA- CAAAAG AAAGAA-
1 AAAAAG AAAAAG AAAAA-G AAAAAG AAA-A-AG A-AAAAG AAAAAG AAA-AAG
*
8201198 AGAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAA
8201221 AGAAGAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
5 11 0.21
6 27 0.51
7 9 0.17
8 4 0.08
9 2 0.04
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:8201169 original size:10 final size:11
Alignment explanation
Indices: 8201143--8201231 Score: 55
Period size: 10 Copynumber: 8.0 Consensus size: 11
8201133 GCTAGGGTTT
8201143 GAGAA-AAAAA
1 GAGAAGAAAAA
*
8201153 GAAAAGAAAAA
1 GAGAAGAAAAA
8201164 G-GAAGAAGAAA
1 GAGAAGAA-AAA
8201175 GAGAGAGAAAACA
1 GAGA-AGAAAA-A
8201188 -A-AAGAAAGAA
1 GAGAAGAAA-AA
8201198 -AGAAAGAAAAA
1 GAG-AAGAAAAA
*
8201209 GAAAAAGAAAAA
1 G-AGAAGAAAAA
8201221 -AGAAGAGAAAA
1 GAGAAGA-AAAA
8201232 AAATAAAAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 21
0.72 0.04 0.24
Matches are distributed among these distances:
10 21 0.33
11 18 0.28
12 19 0.30
13 6 0.09
ACGTcount: A:0.75, C:0.01, G:0.24, T:0.00
Consensus pattern (11 bp):
GAGAAGAAAAA
Found at i:8201183 original size:28 final size:28
Alignment explanation
Indices: 8201148--8201234 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
8201138 GGTTTGAGAA
8201148 AAAAAGAAAAGAAAAAGGAAGAAGAAAG
1 AAAAAGAAAAGAAAAAGGAAGAAGAAAG
* * * *
8201176 AGAGAGAAAA-CAAAAGAAAGAAAGAAAG
1 AAAAAGAAAAGAAAAAGGAAG-AAGAAAG
*
8201204 AAAAAGAAAAAGAAAAAAGAAG-AGAAA-
1 AAAAAG-AAAAGAAAAAGGAAGAAGAAAG
8201231 AAAA
1 AAAA
8201235 TAAAAATATA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
27 12 0.26
28 24 0.51
29 4 0.09
30 7 0.15
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (28 bp):
AAAAAGAAAAGAAAAAGGAAGAAGAAAG
Found at i:8201205 original size:12 final size:11
Alignment explanation
Indices: 8201147--8201233 Score: 70
Period size: 12 Copynumber: 7.5 Consensus size: 11
8201137 GGGTTTGAGA
8201147 AAAAAAGAAA-
1 AAAAAAGAAAG
*
8201157 AGAAAAAGGAAG
1 A-AAAAAGAAAG
*
8201169 AAGAAAGAGAGAG
1 AA-AAA-AGAAAG
*
8201182 AAAACA-AAAG
1 AAAAAAGAAAG
8201192 AAAGAAAGAAAG
1 AAA-AAAGAAAG
*
8201204 AAAAAGAAAAAG
1 AAAAA-AGAAAG
8201216 AAAAAAGAAGAG
1 AAAAAAGAA-AG
8201228 AAAAAA
1 AAAAAA
8201234 ATAAAAATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
10 7 0.11
11 17 0.28
12 31 0.51
13 6 0.10
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:8201214 original size:24 final size:24
Alignment explanation
Indices: 8201144--8201232 Score: 85
Period size: 24 Copynumber: 3.6 Consensus size: 24
8201134 CTAGGGTTTG
* *
8201144 AGAAAAAAAG-AAAAGAAAAAGGA
1 AGAAAGAAAGAAAAAGAAAAAGAA
*
8201167 AG-AAGAAAGAGAGAGAAAACAAAAGAA
1 AGAAAGAAAGA-A-A-AAGA-AAAAGAA
8201194 AGAAAGAAAGAAAAAGAAAAAGAA
1 AGAAAGAAAGAAAAAGAAAAAGAA
8201218 A-AAAGAAGAGAAAAA
1 AGAAAGAA-AGAAAAA
8201233 AATAAAAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
22 6 0.11
23 8 0.15
24 16 0.29
25 4 0.07
26 4 0.07
27 9 0.16
28 8 0.15
ACGTcount: A:0.76, C:0.01, G:0.22, T:0.00
Consensus pattern (24 bp):
AGAAAGAAAGAAAAAGAAAAAGAA
Found at i:8201228 original size:46 final size:46
Alignment explanation
Indices: 8201144--8201231 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
8201134 CTAGGGTTTG
* *
8201144 AGAAAAAAAGAAAAGAAAAAGGAAGAAGAAAGAGAGAGAAAACAAA
1 AGAAAAAAAGAAAAGAAAAAGAAAGAAAAAAGAGAGAGAAAACAAA
*
8201190 AGAAAGAAAG-AAAGAAAAAGAAAAAGAAAAAAGA-AGAGAAAA
1 AGAAAAAAAGAAAAGAAAAAG--AAAGAAAAAAGAGAGAGAAAA
8201232 AAATAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 10 0.27
46 17 0.46
47 10 0.27
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (46 bp):
AGAAAAAAAGAAAAGAAAAAGAAAGAAAAAAGAGAGAGAAAACAAA
Found at i:8201404 original size:19 final size:21
Alignment explanation
Indices: 8201382--8201421 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
8201372 AGTCCTTAAT
*
8201382 AGCATGCCAG-CA-CCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
8201401 AGCAGGCCAGACAGCCCAGCA
1 AGCAGGCCAGACAGCCCAGCA
8201422 GTAGGCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (21 bp):
AGCAGGCCAGACAGCCCAGCA
Found at i:8201472 original size:13 final size:13
Alignment explanation
Indices: 8201454--8201478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8201444 TGTCAGCAGA
8201454 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
8201467 AAAAGAAAAAAA
1 AAAAGAAAAAAA
8201479 ACAACAGCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:8201624 original size:16 final size:16
Alignment explanation
Indices: 8201594--8201648 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
8201584 GTCCAACAGT
*
8201594 AGAAAAAAAA-AGAAA
1 AGAAAAAAAAGGGAAA
8201609 A-AAAGAAAAAGGGAAA
1 AGAAA-AAAAAGGGAAA
*
8201625 AGAAAAAAAA-GAAAA
1 AGAAAAAAAAGGGAAA
8201640 AGAAAAAAA
1 AGAAAAAAA
8201649 GCTCAAGTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 3 0.09
15 19 0.54
16 10 0.29
17 3 0.09
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AGAAAAAAAAGGGAAA
Found at i:8201627 original size:21 final size:22
Alignment explanation
Indices: 8201601--8201641 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
8201591 AGTAGAAAAA
8201601 AAAAG-AAAAAAAGAAAAAGGG
1 AAAAGAAAAAAAAGAAAAAGGG
8201622 AAAAGAAAAAAAAGAAAAAG
1 AAAAGAAAAAAAAGAAAAAG
8201642 AAAAAAAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (22 bp):
AAAAGAAAAAAAAGAAAAAGGG
Found at i:8201647 original size:22 final size:21
Alignment explanation
Indices: 8201599--8201647 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
8201589 ACAGTAGAAA
8201599 AAAAAAGAAAAAAAGAAAAAG
1 AAAAAAGAAAAAAAGAAAAAG
**
8201620 GGAAAAGAAAAAAAAGAAAAAG
1 AAAAAAG-AAAAAAAGAAAAAG
8201642 AAAAAA
1 AAAAAA
8201648 AGCTCAAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAAAAAGAAAAAG
Found at i:8208100 original size:44 final size:45
Alignment explanation
Indices: 8208037--8208134 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
8208027 CTATTACACC
*
8208037 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * **
8208081 TCCATTACATTCAACCAAACAATTGATTTGTTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
8208126 TCCATTACA
1 TCCATTACA
8208135 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:8239571 original size:18 final size:18
Alignment explanation
Indices: 8239548--8239582 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8239538 CGAGGCTTGA
*
8239548 ATTTTCAAGCTCGAGCCT
1 ATTTTCAAGCTCAAGCCT
8239566 ATTTTCAAGCTCAAGCC
1 ATTTTCAAGCTCAAGCC
8239583 CGACCCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (18 bp):
ATTTTCAAGCTCAAGCCT
Found at i:8246484 original size:31 final size:31
Alignment explanation
Indices: 8246449--8246515 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
8246439 AGGCGTATGG
* *
8246449 GCCCACACAGGCAGACCACATTGGCATGTGA
1 GCCCACACAAGCAGACCACATAGGCATGTGA
* *
8246480 GCCCACACAAGCAGATCACATAGGCGTGTGA
1 GCCCACACAAGCAGACCACATAGGCATGTGA
8246511 GCCCA
1 GCCCA
8246516 TTATCACTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.12
Consensus pattern (31 bp):
GCCCACACAAGCAGACCACATAGGCATGTGA
Found at i:8255875 original size:15 final size:16
Alignment explanation
Indices: 8255855--8255887 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
8255845 TTTAACATAG
8255855 ATAATAATATATA-AA
1 ATAATAATATATATAA
8255870 ATAATAATATATATAA
1 ATAATAATATATATAA
8255886 AT
1 AT
8255888 TTAAACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAATAATATATATAA
Found at i:8258250 original size:46 final size:46
Alignment explanation
Indices: 8258194--8258369 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
8258184 TGATTGAGCA
* *
8258194 TCCGAACTCGTTGAGTTGATTCCGAGTTAACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8258240 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8258285 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
8258333 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8258370 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 59 0.54
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8258350 original size:93 final size:93
Alignment explanation
Indices: 8258191--8258362 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
8258181 GGATGATTGA
* *
8258191 GCATCCGAACTCGTTGAGTTGATTCCGAGTTAACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGTCCGAACTCGTTGAGT
8258256 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
8258284 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGTCC-GAACTCGTTGAG
8258348 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
8258363 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.