Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 26 of 228
Found at i:8260522 original size:27 final size:27
Alignment explanation
Indices: 8260467--8260566 Score: 89
Period size: 27 Copynumber: 3.6 Consensus size: 27
8260457 AGTACATAAT
* *
8260467 AAAATAAAAT-AAAACATATAAGTC-TGA
1 AAAATAAAATAAAAACAAATAA--CAAGA
8260494 AAAATAAAATAAAAACAAATAACAAGA
1 AAAATAAAATAAAAACAAATAACAAGA
* * *
8260521 AAATTACAAATAGAAATAGAAATAAAAAGA
1 AAAATA-AAATA-AAA-ACAAATAACAAGA
8260551 AAAAT-AAATAAAAACA
1 AAAATAAAATAAAAACA
8260567 TAAAACTAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
26 3 0.05
27 20 0.33
28 20 0.33
29 3 0.05
30 15 0.25
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.16
Consensus pattern (27 bp):
AAAATAAAATAAAAACAAATAACAAGA
Found at i:8260685 original size:17 final size:15
Alignment explanation
Indices: 8260658--8260699 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 15
8260648 AAATGGAAAT
*
8260658 AATAATATAATAATA
1 AATAATTTAATAATA
8260673 ACACTAATTTAATAATA
1 A-A-TAATTTAATAATA
8260690 AATAATTTAA
1 AATAATTTAA
8260700 ACAACAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.38
16 2 0.08
17 13 0.54
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (15 bp):
AATAATTTAATAATA
Found at i:8268792 original size:17 final size:18
Alignment explanation
Indices: 8268761--8268794 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8268751 ATAATAATGA
8268761 AAATATAAATAAATAAAT
1 AAATATAAATAAATAAAT
*
8268779 AAATA-AAATGAATAAA
1 AAATATAAATAAATAAA
8268795 ATTATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
AAATATAAATAAATAAAT
Found at i:8271784 original size:12 final size:11
Alignment explanation
Indices: 8271762--8271791 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
8271752 TAAAATTAGT
8271762 TAAATAATAAA
1 TAAATAATAAA
8271773 TAAATGAATAAA
1 TAAAT-AATAAA
8271785 TAAATAA
1 TAAATAA
8271792 AAAGGATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
TAAATAATAAA
Found at i:8272190 original size:31 final size:31
Alignment explanation
Indices: 8272097--8272192 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
8272087 GGTAAATTAC
*
8272097 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
8272128 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
8272160 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
8272191 AA
1 AA
8272193 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:8276141 original size:15 final size:15
Alignment explanation
Indices: 8276121--8276151 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8276111 AAAACAACAT
8276121 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
8276136 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
8276151 A
1 A
8276152 CTTACATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:8280500 original size:15 final size:15
Alignment explanation
Indices: 8280480--8280510 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8280470 AAAACAACAT
8280480 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
8280495 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
8280510 A
1 A
8280511 CTTACATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:8280737 original size:16 final size:16
Alignment explanation
Indices: 8280716--8280747 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8280706 TTCCGAAAGC
8280716 GTGTTTGGTAATTTGT
1 GTGTTTGGTAATTTGT
8280732 GTGTTTGGTAATTTGT
1 GTGTTTGGTAATTTGT
8280748 CTCTACCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.31, T:0.56
Consensus pattern (16 bp):
GTGTTTGGTAATTTGT
Found at i:8285199 original size:18 final size:18
Alignment explanation
Indices: 8285174--8285217 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8285164 GCTTGTGGAC
*
8285174 GATGGTTGGTCTGTAGAT
1 GATGGTTGGCCTGTAGAT
* *
8285192 GGTGGTTGGCCTGTGGAT
1 GATGGTTGGCCTGTAGAT
8285210 GATGGTTG
1 GATGGTTG
8285218 TGGAAGTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.11, C:0.07, G:0.45, T:0.36
Consensus pattern (18 bp):
GATGGTTGGCCTGTAGAT
Found at i:8286867 original size:13 final size:13
Alignment explanation
Indices: 8286849--8286873 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8286839 CGACATGTAA
8286849 ATAAATATTAATT
1 ATAAATATTAATT
8286862 ATAAATATTAAT
1 ATAAATATTAAT
8286874 AACTCTCGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAATATTAATT
Found at i:8289187 original size:37 final size:37
Alignment explanation
Indices: 8289146--8289321 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
8289136 TTTGAGTACT
8289146 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
8289183 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
8289220 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
8289257 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
8289294 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
8289322 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:8289393 original size:45 final size:46
Alignment explanation
Indices: 8289284--8289407 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
8289274 GTGATAAGTG
* *
8289284 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
8289330 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
8289375 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
8289408 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:8300555 original size:18 final size:18
Alignment explanation
Indices: 8300532--8300568 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8300522 TCGTCTCACA
8300532 ATATAAAATGTCACATCC
1 ATATAAAATGTCACATCC
8300550 ATATAAAATGTCACATCC
1 ATATAAAATGTCACATCC
8300568 A
1 A
8300569 GTAAGTTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (18 bp):
ATATAAAATGTCACATCC
Found at i:8301029 original size:12 final size:12
Alignment explanation
Indices: 8301014--8301043 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8301004 ACAATAATAC
8301014 TATATATAAATG
1 TATATATAAATG
*
8301026 TATATATATATG
1 TATATATAAATG
8301038 TATATA
1 TATATA
8301044 ATAGAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (12 bp):
TATATATAAATG
Found at i:8301149 original size:19 final size:17
Alignment explanation
Indices: 8301125--8301171 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
8301115 AATTAAAGTA
*
8301125 ATAAAAAATAATACTATAT
1 ATAAAAAAT-ATA-TATAC
*
8301144 ATAAAATATATATATAC
1 ATAAAAAATATATATAC
8301161 AT-AAAAATATA
1 ATAAAAAATATA
8301172 CACTAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 8 0.32
17 6 0.24
18 3 0.12
19 8 0.32
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAAATATATATAC
Found at i:8301167 original size:18 final size:19
Alignment explanation
Indices: 8301128--8301176 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
8301118 TAAAGTAATA
*
8301128 AAAAATA-ATACTATATAT
1 AAAAATATATACTATACAT
8301146 -AAAATATATA-TATACAT
1 AAAAATATATACTATACAT
*
8301163 AAAAATATACACTA
1 AAAAATATATACTA
8301177 ATATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 12 0.46
18 12 0.46
19 2 0.08
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATATATACTATACAT
Found at i:8301403 original size:3 final size:3
Alignment explanation
Indices: 8301390--8301475 Score: 60
Period size: 3 Copynumber: 29.3 Consensus size: 3
8301380 GAGGGCATAT
8301390 ATA AT- ATA ATA ATA AT- ATA A-A A-A ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -AT-A -ATA ATA
* *
8301434 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8301476 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 13 0.19
3 46 0.68
4 7 0.10
5 2 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:8301416 original size:18 final size:18
Alignment explanation
Indices: 8301395--8301475 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
8301385 CATATATAAT
8301395 ATAATAATAATATAAAAA
1 ATAATAATAATATAAAAA
* *
8301413 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-ATAAAAA
*
8301434 ATAATAATAATATAAATA
1 ATAATAATAATATAAAAA
*
8301452 ATAGTAA-AA-ATAATAAA
1 ATAATAATAATATAA-AAA
8301469 ATAATAA
1 ATAATAA
8301476 AACAAAGCTC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
16 4 0.08
17 10 0.19
18 18 0.34
19 5 0.09
20 5 0.09
21 11 0.21
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (18 bp):
ATAATAATAATATAAAAA
Found at i:8301841 original size:23 final size:23
Alignment explanation
Indices: 8301806--8301878 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
8301796 CCTTTTTTAC
*
8301806 AAAAAAA-CACCTCCAAAAAACA
1 AAAAAAACCTCCTCCAAAAAACA
8301828 AAAAAAACCTCCTCC--AAAACA
1 AAAAAAACCTCCTCCAAAAAACA
* * *
8301849 AAGAACAATCCTTCTCCAAAAAACC
1 AA-AA-AAACCTCCTCCAAAAAACA
8301874 AAAAA
1 AAAAA
8301879 CCCACCCCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
21 8 0.19
22 9 0.21
23 16 0.38
24 2 0.05
25 7 0.17
ACGTcount: A:0.60, C:0.29, G:0.01, T:0.10
Consensus pattern (23 bp):
AAAAAAACCTCCTCCAAAAAACA
Found at i:8301846 original size:21 final size:21
Alignment explanation
Indices: 8301804--8301869 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
8301794 AACCTTTTTT
**
8301804 ACAAAAAAACACCTCC-AAAAA
1 ACAAAAAAA-ACCTCCTCCAAA
8301825 ACAAAAAAAACCTCCTCCAAA
1 ACAAAAAAAACCTCCTCCAAA
* *
8301846 ACAAAGAACAATCCTTCTCCAAA
1 ACAAA-AA-AAACCTCCTCCAAA
8301869 A
1 A
8301870 AACCAAAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.16
21 17 0.45
22 2 0.05
23 13 0.34
ACGTcount: A:0.58, C:0.30, G:0.02, T:0.11
Consensus pattern (21 bp):
ACAAAAAAAACCTCCTCCAAA
Found at i:8302016 original size:38 final size:38
Alignment explanation
Indices: 8301962--8302061 Score: 182
Period size: 38 Copynumber: 2.6 Consensus size: 38
8301952 GGTGGCCAAG
*
8301962 GGTGGTGGAGTTGGTGGCTAAGGTGGGTGGCCAACAAA
1 GGTGGTGGAGTAGGTGGCTAAGGTGGGTGGCCAACAAA
8302000 GGTGGTGGAGTAGGTGGCTAAGGTGGGTGGCCAACAAA
1 GGTGGTGGAGTAGGTGGCTAAGGTGGGTGGCCAACAAA
*
8302038 GGTGGTGGAGTAGGTGGCCAAGGT
1 GGTGGTGGAGTAGGTGGCTAAGGT
8302062 TTTTATTTAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.21, C:0.10, G:0.49, T:0.20
Consensus pattern (38 bp):
GGTGGTGGAGTAGGTGGCTAAGGTGGGTGGCCAACAAA
Found at i:8302955 original size:127 final size:126
Alignment explanation
Indices: 8302708--8302946 Score: 327
Period size: 127 Copynumber: 1.9 Consensus size: 126
8302698 AACTTTTGTT
* *
8302708 TTTTTCTACAATAGTTTCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGATAATGTAAAAA
1 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
* * * *
8302773 ACGCTTTAAGCAGGATGCACTGTCAACAAAATTACTGAAAAGAGCTCCTACGTGGATGCTC
66 ACGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGATGCTC
* * * * * *
8302834 TTTTTCTACAATAGTTCCTGAAAAAGTTAATTTTGAGAAGACGGTTCTGAACAGACAGTGTCAAA
1 TTTTTCTACAATAGTTCCTGAAAAA-ATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAA
**
8302899 AACGCTTCAAGCAGAATGCACTGTCAGTAAAATTGA-TGAAAAAAGATC
65 AACGCTTCAAGCAGAATGCACTGTCAACAAAATT-ACTGAAAAAAGATC
8302947 TCATGTGGAC
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
126 24 0.25
127 72 0.74
128 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (126 bp):
TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
ACGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGATGCTC
Found at i:8302966 original size:127 final size:126
Alignment explanation
Indices: 8302709--8302977 Score: 308
Period size: 127 Copynumber: 2.1 Consensus size: 126
8302699 ACTTTTGTTT
* *
8302709 TTTTCTACAATAGTTTCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGATAATGTAAAAAA
1 TTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAAA
* * * * *** *
8302774 CGCTTTAAGCAGGATGCACTGTCAACAAAATTACTGAAAAGAGCTCCTACGTGGATGCTCT
66 CGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGACAATCA
* * * * * *
8302835 TTTTCTACAATAGTTCCTGAAAAAGTTAATTTTGAGAAGACGGTTCTGAACAGACAGTGTCAAAA
1 TTTTCTACAATAGTTCCTGAAAAA-ATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAA
** *
8302900 ACGCTTCAAGCAGAATGCACTGTCAGTAAAATTGA-TGAAAAAAGAT-CTCATGTGGACAATCA
65 ACGCTTCAAGCAGAATGCACTGTCAACAAAATT-ACTGAAAAAAGATCCT-ACGTGGACAATCA
* *
8302962 TTTTCTATAGTAGTTC
1 TTTTCTACAATAGTTC
8302978 TTGTTTGGCC
Statistics
Matches: 119, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
126 25 0.21
127 93 0.78
128 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAAACGGTTCTAAAAAGACAATGTAAAAAA
CGCTTCAAGCAGAATGCACTGTCAACAAAATTACTGAAAAAAGATCCTACGTGGACAATCA
Found at i:8306121 original size:24 final size:24
Alignment explanation
Indices: 8306065--8306121 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
8306055 AAGAACTTTT
8306065 ATTTTATTAAAAATATAAAAATAA
1 ATTTTATTAAAAATATAAAAATAA
*
8306089 ATTACTATT-AAAATATTAAAAATAA
1 ATT-TTATTAAAAATA-TAAAAATAA
*
8306114 CTTTTATT
1 ATTTTATT
8306122 TTATTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTTTATTAAAAATATAAAAATAA
Found at i:8306170 original size:92 final size:92
Alignment explanation
Indices: 8306069--8306261 Score: 359
Period size: 92 Copynumber: 2.1 Consensus size: 92
8306059 ACTTTTATTT
*
8306069 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAATAACTTTTATTTTATTAAATGAA
1 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
8306134 ACAATATAAAAATAGTTTGTACAAATA
66 ACAATATAAAAATAGTTTGTACAAATA
8306161 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
1 TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
* *
8306226 ATAATATAAAAATAGTTTTTACAAATA
66 ACAATATAAAAATAGTTTGTACAAATA
8306253 TATTAAAAA
1 TATTAAAAA
8306262 AATCAATGTT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 98 1.00
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (92 bp):
TATTAAAAATATAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA
ACAATATAAAAATAGTTTGTACAAATA
Found at i:8308194 original size:25 final size:24
Alignment explanation
Indices: 8308157--8308208 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
8308147 ACTGTTATAA
* *
8308157 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAAAT-ATT
8308181 AAAATTACATAAATGAAAAAATATT
1 AAAATTACA-AAATGAAAAAATATT
8308206 AAA
1 AAA
8308209 TAATATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAATATT
Found at i:8311445 original size:21 final size:21
Alignment explanation
Indices: 8311373--8311449 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
8311363 TTCATTATAA
*
8311373 TCATCCTCGTCATCATCATCA
1 TCATCCTCGTCATCATCATCT
**
8311394 TCAT-CAAG-CAAGTCATCATCT
1 TCATCCTCGTC-A-TCATCATCT
*
8311415 TCGTCCTCGTCATCATCATCT
1 TCATCCTCGTCATCATCATCT
**
8311436 TCATTGTCGTCATC
1 TCATCCTCGTCATC
8311450 CATGCCTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 35 0.81
22 3 0.07
23 1 0.02
ACGTcount: A:0.22, C:0.34, G:0.09, T:0.35
Consensus pattern (21 bp):
TCATCCTCGTCATCATCATCT
Found at i:8317009 original size:19 final size:21
Alignment explanation
Indices: 8316959--8317014 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 21
8316949 AAAATGAAAA
*
8316959 AAAAATAGTAAAAGTTATTTT
1 AAAAATATTAAAAGTTATTTT
8316980 AAAAA-ATTTAAAA-TT-TTTT
1 AAAAATA-TTAAAAGTTATTTT
8316999 AAAAATATTAAAAGTT
1 AAAAATATTAAAAGTT
8317015 GAAAAAATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 15 0.48
20 6 0.19
21 10 0.32
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (21 bp):
AAAAATATTAAAAGTTATTTT
Found at i:8320418 original size:14 final size:16
Alignment explanation
Indices: 8320383--8320421 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
8320373 CTTTAATTTA
8320383 TATATATACATACTTT
1 TATATATACATACTTT
**
8320399 TATATATACATGTTTT
1 TATATATACATACTTT
8320415 TATATAT
1 TATATAT
8320422 TTCCATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (16 bp):
TATATATACATACTTT
Found at i:8322729 original size:27 final size:27
Alignment explanation
Indices: 8322691--8322763 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
8322681 AACACGTCAG
* *
8322691 GAAAGGAACGTCTTTGTGGC-AAATTAT
1 GAAAAGAACGTCTTTGTAGCGAAA-TAT
* *
8322718 GAAATGAACGTCTTTGTAGCGTAATAT
1 GAAAAGAACGTCTTTGTAGCGAAATAT
*
8322745 GAAAAGAACGCCTTTGTAG
1 GAAAAGAACGTCTTTGTAG
8322764 TGAATCATGA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 38 0.95
28 2 0.05
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (27 bp):
GAAAAGAACGTCTTTGTAGCGAAATAT
Found at i:8327921 original size:23 final size:23
Alignment explanation
Indices: 8327871--8327915 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8327861 TTCAACACTT
*
8327871 AATTTTCTATACTTATTTTTTAA
1 AATTTTCTATACTTAATTTTTAA
*
8327894 AATTTTTTAATACTTAATTTTT
1 AATTTTCT-ATACTTAATTTTT
8327916 CAATTTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (23 bp):
AATTTTCTATACTTAATTTTTAA
Found at i:8352675 original size:20 final size:20
Alignment explanation
Indices: 8352650--8352696 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8352640 ATGTTATCAT
8352650 TGTTCATAACTTGACTCCAC
1 TGTTCATAACTTGACTCCAC
* * *
8352670 TGTTCATGATTTGACTCTAC
1 TGTTCATAACTTGACTCCAC
*
8352690 TATTCAT
1 TGTTCAT
8352697 GGGACTGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (20 bp):
TGTTCATAACTTGACTCCAC
Found at i:8362340 original size:21 final size:23
Alignment explanation
Indices: 8362293--8362398 Score: 59
Period size: 21 Copynumber: 4.8 Consensus size: 23
8362283 CTTATTATTC
*
8362293 TTTATATTATTAAATTGATATAA
1 TTTATATTATTAAATTAATATAA
8362316 --TATATTATT-AATTAATA-AA
1 TTTATATTATTAAATTAATATAA
**
8362335 TTTATAAAATT--ATTAAATATAA
1 TTTATATTATTAAATT-AATATAA
* * *
8362357 -TTAGATAAATTAAAATTAATAAAA
1 TTTATAT-TATT-AAATTAATATAA
8362381 TTTA-ATTAATT-AATTAAT
1 TTTATATT-ATTAAATTAAT
8362399 TATGATTTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 21
0.70 0.07 0.22
Matches are distributed among these distances:
19 2 0.03
20 10 0.15
21 24 0.36
22 13 0.20
24 11 0.17
25 6 0.09
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TTTATATTATTAAATTAATATAA
Found at i:8362373 original size:28 final size:28
Alignment explanation
Indices: 8362324--8362397 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 28
8362314 AATATATTAT
*
8362324 TAATTAATAAATTTATAAAATT-ATTAAATA
1 TAATTAATAAA--T-TAAAATTAATAAAATA
*
8362354 TAATTAGATAAATTAAAATTAATAAAATT
1 TAATTA-ATAAATTAAAATTAATAAAATA
*
8362383 TAATTAATTAATTAA
1 TAATTAATAAATTAA
8362398 TTATGATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
28 15 0.38
29 13 0.33
30 6 0.15
31 5 0.13
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (28 bp):
TAATTAATAAATTAAAATTAATAAAATA
Found at i:8363223 original size:12 final size:12
Alignment explanation
Indices: 8363206--8363260 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
8363196 ATGAAGTTAA
8363206 TTTATTTAATAT
1 TTTATTTAATAT
8363218 TTTATTATAAT-T
1 TTTATT-TAATAT
* *
8363230 TATTTTTTAATTT
1 T-TTATTTAATAT
8363243 TTTATTTAA-AT
1 TTTATTTAATAT
*
8363254 ATTATTT
1 TTTATTT
8363261 TATTCTCTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
11 7 0.19
12 19 0.53
13 10 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATTTAATAT
Found at i:8363245 original size:25 final size:26
Alignment explanation
Indices: 8363205--8363261 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
8363195 AATGAAGTTA
8363205 ATTTATTTAATATTTTA-TTATAAT-TT
1 ATTT-TTTAATATTTTATTTA-AATATT
*
8363231 ATTTTTTAATTTTTTATTTAAATATT
1 ATTTTTTAATATTTTATTTAAATATT
8363257 ATTTT
1 ATTTT
8363262 ATTCTCTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
ATTTTTTAATATTTTATTTAAATATT
Found at i:8369300 original size:20 final size:20
Alignment explanation
Indices: 8369275--8369342 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 20
8369265 TTAACCATAC
*
8369275 AAAAATTAATAACTACAGTA
1 AAAAATTAATAACTACAATA
*
8369295 AAAAATCAATATAACTACAATA
1 AAAAAT-TA-ATAACTACAATA
* * *
8369317 ACAAATTAATATAATGCAATA
1 AAAAATTAATA-ACTACAATA
8369338 AAAAA
1 AAAAA
8369343 ATCAAAAATC
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 9 0.24
21 13 0.34
22 16 0.42
ACGTcount: A:0.63, C:0.10, G:0.03, T:0.24
Consensus pattern (20 bp):
AAAAATTAATAACTACAATA
Found at i:8369311 original size:22 final size:22
Alignment explanation
Indices: 8369283--8369347 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
8369273 ACAAAAATTA
*
8369283 ATAACTACAGTAAAAAATCAAT
1 ATAACTACAATAAAAAATCAAT
* *
8369305 ATAACTACAATAACAAATTAAT
1 ATAACTACAATAAAAAATCAAT
*
8369327 ATAA-TGCAATAAAAAAATCAA
1 ATAACTACAAT-AAAAAATCAA
8369348 AAATCCAATC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.14
22 31 0.86
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.23
Consensus pattern (22 bp):
ATAACTACAATAAAAAATCAAT
Found at i:8371505 original size:14 final size:14
Alignment explanation
Indices: 8371486--8371539 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
8371476 ACTCACTTGT
8371486 ATTATTTTTTTAAG
1 ATTATTTTTTTAAG
*
8371500 ATTATTTTTAAATT-TG
1 ATTATTTTT---TTAAG
8371516 TATTATTTTTTTAAG
1 -ATTATTTTTTTAAG
8371531 ATTATTTTT
1 ATTATTTTT
8371540 ACATAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 20 0.61
15 1 0.03
16 1 0.03
17 11 0.33
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (14 bp):
ATTATTTTTTTAAG
Found at i:8371520 original size:31 final size:31
Alignment explanation
Indices: 8371482--8371540 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
8371472 CCCGACTCAC
8371482 TTGTATTATTTTTTTAAGATTATTTTTAAAT
1 TTGTATTATTTTTTTAAGATTATTTTTAAAT
8371513 TTGTATTATTTTTTTAAGATTATTTTTA
1 TTGTATTATTTTTTTAAGATTATTTTTA
8371541 CATAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (31 bp):
TTGTATTATTTTTTTAAGATTATTTTTAAAT
Found at i:8371786 original size:22 final size:22
Alignment explanation
Indices: 8371761--8371805 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8371751 TAGTAGTAAT
*
8371761 ATAATAGCAAAATGACAACAAA
1 ATAATAGCAAAATAACAACAAA
*
8371783 ATAATAGCGAAATAACAACAAA
1 ATAATAGCAAAATAACAACAAA
8371805 A
1 A
8371806 CAACTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.64, C:0.13, G:0.09, T:0.13
Consensus pattern (22 bp):
ATAATAGCAAAATAACAACAAA
Found at i:8371805 original size:33 final size:33
Alignment explanation
Indices: 8371742--8371805 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
8371732 ACAAATGATA
* * * *
8371742 ACAACAAAATAGTAGTAATATAATAGCAAAATG
1 ACAACAAAATAATAGGAATATAACAACAAAATG
8371775 ACAACAAAATAATAGCGAA-ATAACAACAAAA
1 ACAACAAAATAATAG-GAATATAACAACAAAA
8371806 CAACTTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.62, C:0.12, G:0.09, T:0.16
Consensus pattern (33 bp):
ACAACAAAATAATAGGAATATAACAACAAAATG
Found at i:8377466 original size:21 final size:22
Alignment explanation
Indices: 8377426--8377466 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8377416 TTAATAAAAT
**
8377426 TAAAAAAATACAATTTAAAGAC
1 TAAAAAAATACAATAAAAAGAC
8377448 TAAAAAAATA-AATAAAAAG
1 TAAAAAAATACAATAAAAAG
8377467 TTAAAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.20
Consensus pattern (22 bp):
TAAAAAAATACAATAAAAAGAC
Found at i:8377471 original size:20 final size:21
Alignment explanation
Indices: 8377421--8377472 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
8377411 CAACGTTAAT
*
8377421 AAAA-TTAAAAAAATACAATT
1 AAAAGTTAAAAAAATACAATA
* *
8377441 TAAAGACTAAAAAAATA-AATA
1 AAAAG-TTAAAAAAATACAATA
8377462 AAAAGTTAAAA
1 AAAAGTTAAAA
8377473 TAATCTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
20 8 0.32
21 7 0.28
22 10 0.40
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (21 bp):
AAAAGTTAAAAAAATACAATA
Found at i:8385447 original size:16 final size:17
Alignment explanation
Indices: 8385410--8385447 Score: 53
Period size: 15 Copynumber: 2.3 Consensus size: 17
8385400 ATGAAAATTA
8385410 ATTTCTAATATTTTTATG
1 ATTT-TAATATTTTTATG
8385428 -TTTTAAT-TTTTTATG
1 ATTTTAATATTTTTATG
8385443 ATTTT
1 ATTTT
8385448 GTTAATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.42
16 8 0.42
17 3 0.16
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (17 bp):
ATTTTAATATTTTTATG
Found at i:8388238 original size:42 final size:44
Alignment explanation
Indices: 8388192--8388349 Score: 205
Period size: 44 Copynumber: 3.6 Consensus size: 44
8388182 TAGCTCTCAC
*
8388192 GAGCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTC-TTT-T
1 GAGCTTCTGTTTAACTCTTATGAGTTTCCGTTCAGCTCTTTTAT
*
8388234 GAGCTTCTGTTTAAC-CTTTATGAATTTCCGTTCAGCTCTTTTAT
1 GAGCTTCTGTTTAACTC-TTATGAGTTTCCGTTCAGCTCTTTTAT
* ** * *
8388278 AAGCTTCCATTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAT
1 GAGCTTCTGTTTAACTCTTATGAGTTTCCGTTCAGCTCTTTTAT
* *
8388322 GAGCTTCTGTTTAACTTTTATGGGTTTC
1 GAGCTTCTGTTTAACTCTTATGAGTTTC
8388350 TGTTGAGCAC
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.01
42 34 0.34
43 3 0.03
44 61 0.61
45 1 0.01
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (44 bp):
GAGCTTCTGTTTAACTCTTATGAGTTTCCGTTCAGCTCTTTTAT
Found at i:8388285 original size:23 final size:23
Alignment explanation
Indices: 8388210--8388328 Score: 79
Period size: 21 Copynumber: 5.4 Consensus size: 23
8388200 GTTTAACTCA
*
8388210 TATGAGTTTCCGTTCAGCTC-TT
1 TATGAGCTTCCGTTCAGCTCTTT
* * *
8388232 T-TGAGCTTCTGTTTAAC-C-TT
1 TATGAGCTTCCGTTCAGCTCTTT
**
8388252 TATGAATTTCCGTTCAGCTCTTT
1 TATGAGCTTCCGTTCAGCTCTTT
* * * * *
8388275 TATAAGCTTCCATTTAAC-C-CT
1 TATGAGCTTCCGTTCAGCTCTTT
* *
8388296 TATGGGTTTCCGTTCAGCTCTTT
1 TATGAGCTTCCGTTCAGCTCTTT
8388319 TATGAGCTTC
1 TATGAGCTTC
8388329 TGTTTAACTT
Statistics
Matches: 67, Mismatches: 25, Indels: 9
0.66 0.25 0.09
Matches are distributed among these distances:
20 4 0.06
21 36 0.54
22 4 0.06
23 23 0.34
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.45
Consensus pattern (23 bp):
TATGAGCTTCCGTTCAGCTCTTT
Found at i:8395180 original size:43 final size:43
Alignment explanation
Indices: 8395118--8395233 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
8395108 TATGCGTTAT
* *
8395118 CGTGTAAGACCAC-GTCTGGGACGTTGGCATCGACT-TGTGTTTGA
1 CGTGTAAGACC-CTGTCTGGGACGTTGGCATC-AATATGTGATT-A
**
8395162 -GTGTAAGACCCTGTCTGGGACAATGGCATCAATATGTGATTA
1 CGTGTAAGACCCTGTCTGGGACGTTGGCATCAATATGTGATTA
* * *
8395204 CATGTAAGACCATGTCTAGGACGTTGGCAT
1 CGTGTAAGACCCTGTCTGGGACGTTGGCAT
8395234 TGTACGAGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 4 0.07
43 56 0.93
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCCTGTCTGGGACGTTGGCATCAATATGTGATTA
Found at i:8401937 original size:34 final size:33
Alignment explanation
Indices: 8401828--8401937 Score: 150
Period size: 34 Copynumber: 3.2 Consensus size: 33
8401818 AATAAATCAT
8401828 GGTTTAGAGTTTTTCAAAAAAATTAATTAAATTAG
1 GGTTTAGAGTTTTT--AAAAAATTAATTAAATTAG
* *
8401863 GTTTTA-AGGGTTTTAAATAAATTAATTAAATTAG
1 GGTTTAGA-GTTTTTAAA-AAATTAATTAAATTAG
8401897 GGTTTAGAGTTTTTAAGAAAATTAATTAAATTAG
1 GGTTTAGAGTTTTTAA-AAAATTAATTAAATTAG
8401931 GGTTTAG
1 GGTTTAG
8401938 TTTAAAAAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
33 3 0.04
34 52 0.78
35 12 0.18
ACGTcount: A:0.40, C:0.01, G:0.17, T:0.42
Consensus pattern (33 bp):
GGTTTAGAGTTTTTAAAAAATTAATTAAATTAG
Found at i:8402127 original size:31 final size:31
Alignment explanation
Indices: 8402089--8402150 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8402079 TCCTAAAAAG
8402089 ATAATGTCAAAAACGCTTCAAGCAGCATGCA
1 ATAATGTCAAAAACGCTTCAAGCAGCATGCA
* * *
8402120 ATAATGTCAAAAACGTTTCATGCAGGATGCA
1 ATAATGTCAAAAACGCTTCAAGCAGCATGCA
8402151 TTGTCAGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (31 bp):
ATAATGTCAAAAACGCTTCAAGCAGCATGCA
Found at i:8407284 original size:18 final size:18
Alignment explanation
Indices: 8407257--8407296 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8407247 CAAGTGCGTT
* *
8407257 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
8407275 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
8407293 TCCT
1 TCCT
8407297 TTTTCGAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:8407908 original size:192 final size:192
Alignment explanation
Indices: 8407559--8407930 Score: 457
Period size: 192 Copynumber: 1.9 Consensus size: 192
8407549 ATCTATAATA
* * * ** *
8407559 GGTTTAAGTCATGGTTTTCATTTGGAGCTTTGTGATTAAAACACTATTATTAGTTGAATGGAAAT
1 GGTTCAAGTCATGGTTTTCATTTGGAACTTTGTGATTAAAACACAACAATTACTTGAATGGAAAT
* * * * * ** *
8407624 GCATTTGCATTTGTGTATCCTGCAATGCTTTTTAATTGAACTTTGGGGTTGGAATTGTTATTAGG
66 GCACTTGCATTTGTATATCCTGCAAAGCTTTTTAAGTCAACTTTGGAATTGAAATTGTTATTAGG
* *
8407689 AAGTAATTGATGTTTTTATGTTGATGTTAATGAATACAATAGACTAAGTTGAATTTTTTATG
131 AAGTAATTGATGTTTTTATGTTGATGTTAATGAACACAATAGACCAAGTTGAATTTTTTATG
* *
8407751 GGTTCAAGTTATGGTTTTCATTT-GAACTTTGTGATTACAACACAACAAGTTACTTGAATGGAAA
1 GGTTCAAGTCATGGTTTTCATTTGGAACTTTGTGATTAAAACACAACAA-TTACTTGAATGGAAA
** *
8407815 TGCACTTGTGTTT-TCATATCCTGCAAAGCTTCTTT-AGTCAATTTTGGAATTGAAATTGTTATT
65 TGCACTTGCATTTGT-ATATCCTGCAAAGCTT-TTTAAGTCAACTTTGGAATTGAAATTGTTATT
* *
8407878 AGGATGTAATTGATGATTTTT-T-TATGATGTTAATGAACATAATAGACCAAGTT
128 AGGAAGTAATTGATG-TTTTTATGT-TGATGTTAATGAACACAATAGACCAAGTT
8407931 TGGGACCTTT
Statistics
Matches: 152, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
191 22 0.14
192 122 0.80
193 8 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (192 bp):
GGTTCAAGTCATGGTTTTCATTTGGAACTTTGTGATTAAAACACAACAATTACTTGAATGGAAAT
GCACTTGCATTTGTATATCCTGCAAAGCTTTTTAAGTCAACTTTGGAATTGAAATTGTTATTAGG
AAGTAATTGATGTTTTTATGTTGATGTTAATGAACACAATAGACCAAGTTGAATTTTTTATG
Found at i:8408694 original size:21 final size:21
Alignment explanation
Indices: 8408670--8408724 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
8408660 AACTCTAACA
8408670 CTAACCCTAAACTTAAAAACC
1 CTAACCCTAAACTTAAAAACC
*
8408691 CTAACCCTTAAA-TTAAAAATC
1 CTAACCC-TAAACTTAAAAACC
8408712 CTAAACCCTAAAC
1 CT-AACCCTAAAC
8408725 ATTCACATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (21 bp):
CTAACCCTAAACTTAAAAACC
Found at i:8411972 original size:2 final size:2
Alignment explanation
Indices: 8411965--8412017 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
8411955 TTAGAGATGA
*
8411965 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8412007 TC TC TC TC TC T
1 TC TC TC TC TC T
8412018 TCTATTTTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:8413708 original size:44 final size:44
Alignment explanation
Indices: 8413645--8413738 Score: 179
Period size: 44 Copynumber: 2.1 Consensus size: 44
8413635 GTCTCGACTT
8413645 TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
*
8413689 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
8413733 TCATTT
1 TCATTT
8413739 ATTGAATACA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (44 bp):
TCATTTTCATATACTTATCAAATATAAGTATTGTATTAACCAAA
Found at i:8413732 original size:22 final size:22
Alignment explanation
Indices: 8413663--8413733 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
8413653 ATATACTTAT
8413663 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
** * *
8413685 CAAATCAT-TTTCATATG-CTT-AT
1 CAAAT-ATAAGT-AT-TGTATTAAC
8413707 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
8413729 CAAAT
1 CAAAT
8413734 CATTTATTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 6 0.17
22 19 0.54
23 6 0.17
24 2 0.06
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (22 bp):
CAAATATAAGTATTGTATTAAC
Found at i:8414371 original size:13 final size:13
Alignment explanation
Indices: 8414350--8414426 Score: 118
Period size: 13 Copynumber: 5.9 Consensus size: 13
8414340 ACACTCAAAT
*
8414350 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
8414363 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
* *
8414376 TTCTGAAAAGTAC
1 TTCTCAAAAGCAC
*
8414389 TTTTCAAAAGCAC
1 TTCTCAAAAGCAC
8414402 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
8414415 TTCTCAAAAGCA
1 TTCTCAAAAGCA
8414427 ATAAAGAACT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.10, T:0.26
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:8415968 original size:125 final size:127
Alignment explanation
Indices: 8415667--8415985 Score: 457
Period size: 125 Copynumber: 2.5 Consensus size: 127
8415657 CCCAAACATG
* *
8415667 CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGATTTCACAAATTCTTCTCA-AATAACATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * * *
8415731 CTTGTAGCATTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
65 CTTGAAGCAGTTTTTTAAACTATTTACTCAAAAACGTCAACTAGAAATTATTTCTTCCAGGAC
*
8415794 CTATTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
*
8415859 TTGAAGC-GTTTTTTATACTATTTACTCAAAAACGTCAACTAGAAATTATTT-TTCCAGGAC
66 TTGAAGCAGTTTTTTAAACTATTTACTCAAAAACGTCAACTAGAAATTATTTCTTCCAGGAC
* * * * * *
8415919 CTACTGTAGCAAAAGCGCGTACAC-ATGGGCGCGACTTCAGAAATCCTTCTGATAAAGCATCGTG
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
8415983 CTT
65 CTT
8415986 TGATTTTATT
Statistics
Matches: 174, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
124 1 0.01
125 67 0.39
126 39 0.22
127 65 0.37
128 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (127 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCAGTTTTTTAAACTATTTACTCAAAAACGTCAACTAGAAATTATTTCTTCCAGGAC
Found at i:8416117 original size:9 final size:9
Alignment explanation
Indices: 8416100--8416136 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
8416090 CTTTTTCTCT
8416100 AAAACCCTA
1 AAAACCCTA
*
8416109 AAAATCCTA
1 AAAACCCTA
8416118 AAAACCCT-
1 AAAACCCTA
8416126 -AAACCCTA
1 AAAACCCTA
8416134 AAA
1 AAA
8416137 TTCAAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 7 0.29
9 17 0.71
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.14
Consensus pattern (9 bp):
AAAACCCTA
Found at i:8420024 original size:27 final size:27
Alignment explanation
Indices: 8419994--8420048 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
8419984 TATGTTTATA
**
8419994 TATTAACCTTAATAATAAATTTAGTCT
1 TATTAACCACAATAATAAATTTAGTCT
* *
8420021 TATTCACCACAATGATAAATTTAGTCT
1 TATTAACCACAATAATAAATTTAGTCT
8420048 T
1 T
8420049 CAACGTTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (27 bp):
TATTAACCACAATAATAAATTTAGTCT
Found at i:8427892 original size:23 final size:23
Alignment explanation
Indices: 8427866--8427918 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
8427856 TCAGTTTTTT
8427866 TTATATTCCTCATTATTA-TGCTA
1 TTATATTCCT-ATTATTATTGCTA
* ** *
8427889 TTATCTTTGTATTATTATTGTTA
1 TTATATTCCTATTATTATTGCTA
8427912 TTATATT
1 TTATATT
8427919 TTGTTTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.60
Consensus pattern (23 bp):
TTATATTCCTATTATTATTGCTA
Found at i:8428025 original size:21 final size:21
Alignment explanation
Indices: 8427991--8428030 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8427981 TTTTAGATAA
* *
8427991 ATATATATAGATACTTTTTTT
1 ATATACATAGATACATTTTTT
*
8428012 ATATACATATATACATTTT
1 ATATACATAGATACATTTT
8428031 CATAATATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (21 bp):
ATATACATAGATACATTTTTT
Found at i:8430966 original size:19 final size:19
Alignment explanation
Indices: 8430942--8430986 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8430932 TCTCTTTCTT
8430942 TTTGCATT-CATTCCATGCA
1 TTTGCATTACATTCCAT-CA
*
8430961 TTTGCATTACATTGCATCA
1 TTTGCATTACATTCCATCA
*
8430980 TATGCAT
1 TTTGCAT
8430987 CAGATTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTGCATTACATTCCATCA
Found at i:8446717 original size:21 final size:21
Alignment explanation
Indices: 8446678--8446718 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8446668 TCAAAATGAC
*
8446678 ATAGTTTTGCATTTTAACTTA
1 ATAGTTTTGCATTTGAACTTA
8446699 ATAGTTTTG-ACTTTGAACTT
1 ATAGTTTTGCA-TTTGAACTT
8446719 TAGAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (21 bp):
ATAGTTTTGCATTTGAACTTA
Found at i:8453094 original size:16 final size:19
Alignment explanation
Indices: 8453075--8453111 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
8453065 AGTAAATAAG
8453075 TAATTTT-TTA-AA-ATAT
1 TAATTTTATTATAAGATAT
8453091 TAATTTTATTATAAGATAT
1 TAATTTTATTATAAGATAT
8453110 TA
1 TA
8453112 TCACATCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 2 0.11
19 6 0.33
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATTTTATTATAAGATAT
Found at i:8460882 original size:12 final size:12
Alignment explanation
Indices: 8460865--8460890 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8460855 TTTTTTATAT
8460865 ATATAAAAGGTA
1 ATATAAAAGGTA
8460877 ATATAAAAGGTA
1 ATATAAAAGGTA
8460889 AT
1 AT
8460891 TGAATAGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.15, T:0.27
Consensus pattern (12 bp):
ATATAAAAGGTA
Found at i:8463653 original size:24 final size:24
Alignment explanation
Indices: 8463607--8463654 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8463597 TTTCTAGAAG
* *
8463607 ATTTAGTATTTATGAGTACAATAT
1 ATTTAGCATTTATGAGCACAATAT
* *
8463631 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCACAATAT
8463655 CTTTGACTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCACAATAT
Found at i:8467917 original size:24 final size:24
Alignment explanation
Indices: 8467852--8467905 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8467842 TCTTTCTAGA
* * *
8467852 ATATTTAGTATTTATGAGTATAAT
1 ATATTTAGCATTTATTAGCATAAT
8467876 ATATTTAGCATTTATTAGCATAAT
1 ATATTTAGCATTTATTAGCATAAT
8467900 ATATTT
1 ATATTT
8467906 GGCTTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGCATAAT
Found at i:8472114 original size:22 final size:22
Alignment explanation
Indices: 8472072--8472114 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8472062 TCTCTTCATT
*
8472072 GGTATCACGATATCCTCTTCGA
1 GGTATCACGATATCCTATTCGA
*
8472094 GGTATCGCGATA-CCATATTCG
1 GGTATCACGATATCC-TATTCG
8472115 TCAAGAGGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (22 bp):
GGTATCACGATATCCTATTCGA
Found at i:8475840 original size:15 final size:15
Alignment explanation
Indices: 8475820--8475861 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8475810 ATCTGTTTCG
8475820 TTTGTTGTTTTCCTA
1 TTTGTTGTTTTCCTA
* *
8475835 TTTGTTTTTTTGCTA
1 TTTGTTGTTTTCCTA
*
8475850 TTTGTTGGTTTC
1 TTTGTTGTTTTC
8475862 TGTCTTATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.10, G:0.17, T:0.69
Consensus pattern (15 bp):
TTTGTTGTTTTCCTA
Found at i:8476516 original size:40 final size:40
Alignment explanation
Indices: 8476472--8476797 Score: 316
Period size: 40 Copynumber: 7.8 Consensus size: 40
8476462 TTTTCTTTCG
*
8476472 TCTGCTCCACTACTGCTTAGGAAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* *
8476512 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-G----ATGCGA
8476558 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
8476598 TTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-G----ATGCGA
* *
8476644 TCTGCTCCACTACTTCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
8476684 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-G----ATGCGA
*
8476728 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * *
8476768 TATGCTCCACTATTGTTTAGGGGGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
8476798 TCTGGTCTTC
Statistics
Matches: 238, Mismatches: 26, Indels: 44
0.77 0.08 0.14
Matches are distributed among these distances:
39 7 0.03
40 115 0.48
41 5 0.02
42 2 0.01
43 5 0.02
44 34 0.14
45 6 0.03
46 58 0.24
47 6 0.03
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:8476560 original size:86 final size:86
Alignment explanation
Indices: 8476463--8476801 Score: 583
Period size: 86 Copynumber: 4.0 Consensus size: 86
8476453 TAGGATTGGT
*
8476463 TTTCTTTCGTCTGCTCCACTACTGCTTAGGAAGATAAGACTTGATGCGATCTGCTCCACTACTGC
1 TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGC
8476528 TTAGGGAGATAAGATCTGTGG
66 TTAGGGAGATAAGATCTGTGG
*
8476549 TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATTTGCTCCACTACTGC
1 TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGC
8476614 TTAGGGAGATAAGATCTGTGG
66 TTAGGGAGATAAGATCTGTGG
* *
8476635 TTTCTTTCGTCTGCTCCACTACTTCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGC
1 TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGC
8476700 TTAGGGAGATAAGAT-T-TGG
66 TTAGGGAGATAAGATCTGTGG
* * * *
8476719 TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATATGCTCCACTATTGT
1 TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGC
*
8476784 TTAGGGGGATAAGATCTG
66 TTAGGGAGATAAGATCTG
8476802 GTCTTCGACC
Statistics
Matches: 241, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
84 78 0.32
85 2 0.01
86 161 0.67
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.35
Consensus pattern (86 bp):
TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGTGG
Found at i:8476983 original size:40 final size:40
Alignment explanation
Indices: 8476926--8477027 Score: 159
Period size: 40 Copynumber: 2.5 Consensus size: 40
8476916 GGGAGATAGA
** * *
8476926 ACTACTGCTTATAGAGATAAGACTTGATGCGATCTGCTCC
1 ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGCTCC
*
8476966 ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGTTCC
1 ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGCTCC
8477006 ACTACTGCTTAGGGAGATAAGA
1 ACTACTGCTTAGGGAGATAAGA
8477028 TCTGTGGTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (40 bp):
ACTACTGCTTAGGGAGATAAGACTTGATACAATCTGCTCC
Found at i:8477170 original size:44 final size:44
Alignment explanation
Indices: 8476957--8477448 Score: 144
Period size: 44 Copynumber: 11.3 Consensus size: 44
8476947 ACTTGATGCG
* * * *
8476957 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGA--TACA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
** * **
8476997 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * ** * ***
8477041 ATCTATTCCACTGCCAACC-AGGGAGAT-AGAAT-TATCGGCTTCA
1 ATCTACTCCACT-ACTGCCTAGGGAGATAAG-ATCTGTAATCTTCA
* * * * * ** *
8477084 ATGTACTCCACT-GTAGTCAC-AGTGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-G-C-CTAGGGAGATAAGATCTGTAATCTTCA
*
8477129 ATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * ** * * *
8477173 ATCTATTCCACTGTCAACC-AGTGAGAT-AGA-AT-TATTGGCTTCA
1 ATCTACTCCACT-ACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
8477216 ATGTACTCCACT-GTAGTCATAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-G-CCTAGGGAGATAAGATCTGTAATCTTCA
* * *
8477261 ATCTGCTCCACTACTGCTTAGGGAGAGAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * **
8477305 ATCTATTCCACTGCCAACC-AGGGAGATAGAAGTATC-G--A-CTTCA
1 ATCTACTCCACT-ACTGCCTAGGGAGAT--AAG-ATCTGTAATCTTCA
* * * * * ** *
8477348 ATGTACTCCACT-GTAGTCAC-AGGAAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-G-C-CTAGGGAGATAAGATCTGTAATCTTCA
* * *
8477393 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
*
8477437 ATCTATTCCACT
1 ATCTACTCCACT
8477449 GCCAACCAGG
Statistics
Matches: 322, Mismatches: 94, Indels: 68
0.67 0.19 0.14
Matches are distributed among these distances:
40 30 0.09
41 8 0.02
42 6 0.02
43 57 0.18
44 152 0.47
45 57 0.18
46 8 0.02
47 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:8477234 original size:132 final size:132
Alignment explanation
Indices: 8476997--8477531 Score: 917
Period size: 132 Copynumber: 4.1 Consensus size: 132
8476987 ACTTGATACA
* **
8476997 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTCTTCAATCTATTCCACTGCCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
*
8477062 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGTGAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
8477127 CG
131 CG
* *
8477129 ATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
* * *
8477194 TGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAGTCATAGGGAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
8477259 CG
131 CG
*
8477261 ATCTGCTCCACTACTGCTTAGGGAGAGAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
* * *
8477326 GGAGATAGAAGTATCGACTTCAATGTACTCCACTGTAGTCACAGGAAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
8477391 CG
131 CG
*
8477393 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCAGTAATCTTCAATCTATTCCACTGCCAACCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
* * *
8477458 GGAGATAGAATTATCGGCTTCAACGTACTCCACTGTAGTCTCAGGGAGGTAAAATCCGCCATCTT
66 GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
8477523 CG
131 CG
8477525 ATCTGCT
1 ATCTGCT
8477532 TCACGCTAAT
Statistics
Matches: 377, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 377 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (132 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAACCAG
GGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTT
CG
Found at i:8477698 original size:132 final size:131
Alignment explanation
Indices: 8477515--8477989 Score: 635
Period size: 132 Copynumber: 3.6 Consensus size: 131
8477505 GGTAAAATCC
* * * * * *
8477515 GCCATCTTCGATCTGCTTCACGCTAATACATGAAGACAATATCTGCTTTCTTTGATCTACTTCGC
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTC-C
* * * * * *
8477580 CACCAGTATGGGAAGACAATATCTGCATTTTTGATCCACTTCCTACCAATATAAGAAGGCATGAC
65 CACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGAC
8477645 AT
130 AT
* * * * * *
8477647 GCTATCTACGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGC
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTC-C
* * *
8477712 CACCAATATGGGAAGACAAAATATGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATAAC
65 CACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGAC
*
8477777 CT
130 AT
* *
8477779 ACCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCCT
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCCC
* * * * * *
8477844 ACCAATATAGGAAGACGAGACCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACT
66 ACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGACA
8477909 T
131 T
* * *
8477910 GCCATATTCGATCTAATTCACGCTAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCCT
1 GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCCC
8477975 ACCAATATAGGAAGA
66 ACCAATATAGGAAGA
8477990 TAGGACCTGC
Statistics
Matches: 309, Mismatches: 34, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
131 135 0.44
132 174 0.56
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (131 bp):
GCCATATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCCACTTCCC
ACCAATATAGGAAGACAAAATCTGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATGACA
T
Found at i:8477975 original size:219 final size:218
Alignment explanation
Indices: 8477591--8478177 Score: 705
Period size: 219 Copynumber: 2.7 Consensus size: 218
8477581 ACCAGTATGG
* * * * *
8477591 GAAGACAATATCTGCATTT-TT-GATCCACTTCCTACCAATATAAGAAGGCATGACATGCTATCT
1 GAAGACAAGATCTAC-TTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGC-ATCT
* * * * * * ** * * * * *
8477654 ACGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCACCAA
64 TCGATCCACTTC-CTACCAATATAAGAAGACAGGACCTGCAATATTCGATCTAATTC-ACGCCAA
*** * * * *
8477718 TATGGGAAGACAAAATATGCATTTTCGATCCACTTCCTACCAATATAGGAAGACATAACCTACCA
127 TACATGAAGACAAGATCTGCTTTTTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACCA
8477783 TATTCGATCTACTTCACGCCAATACAT
192 TATTCGATCTACTTCACGCCAATACAT
*
8477810 GAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACGA-GACCTGCATCTT
1 GAAGACAAGATCTACTTTCTTCGATCCACTTCCTACCAATATAGGAAGAC-ATGACCTGCATCTT
* * * *
8477874 CGATCCACTTCCTACCAATATAGGAAGACAGGACTTGCCATATTCGATCTAATTCACGCTAATAC
65 CGATCCACTTCCTACCAATATAAGAAGACAGGACCTGCAATATTCGATCTAATTCACGCCAATAC
* * * *
8477939 ATGAAGACAAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCCATC
130 ATGAAGACAAGATCTGCTTT-TTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACCATA
* **
8478004 TTCGATCTACTTCATGTTAATACAT
194 TTCGATCTACTTCACGCCAATACAT
* *
8478029 GAAGATAAGATCTACTTTCTTCGATCCACTTCCTACCAATATAGGAATACATGACCTGCATCTTC
1 GAAGACAAGATCTACTTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGCATCTTC
* * * *
8478094 GATCCACTTCCTACCAATATAAGAAGACATGACCTGTAATCTTCGATCTACTTCACGCCAATACA
66 GATCCACTTCCTACCAATATAAGAAGACAGGACCTGCAATATTCGATCTAATTCACGCCAATACA
8478159 TGAAGACAAGATCTGCTTT
131 TGAAGACAAGATCTGCTTT
8478178 AATGTCTTCA
Statistics
Matches: 318, Mismatches: 44, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
218 26 0.08
219 259 0.81
220 32 0.10
221 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (218 bp):
GAAGACAAGATCTACTTTCTTCGATCCACTTCCTACCAATATAGGAAGACATGACCTGCATCTTC
GATCCACTTCCTACCAATATAAGAAGACAGGACCTGCAATATTCGATCTAATTCACGCCAATACA
TGAAGACAAGATCTGCTTTTTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTACCATATT
CGATCTACTTCACGCCAATACAT
Found at i:8478006 original size:44 final size:44
Alignment explanation
Indices: 8477563--8478174 Score: 416
Period size: 44 Copynumber: 14.0 Consensus size: 44
8477553 ATATCTGCTT
* * * * * * *
8477563 TCTTTGATCTACTTCGCCACCAGTATGGGAAGACAATATCTG-CA
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGACCTGCCA
* * * * * * *
8477607 TTTTTGATCCACTTCCTACCAATATAAGAAGGCATGACATGCTA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* * * * * **
8477651 TCTACGATCTACTTCAC-ACCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGACCTGCCA
* * * * * **
8477695 TCTTTGATCTACTTCGCCACCAATATGGGAAGACAAAATATG-CA
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGACCTGCCA
* *
8477739 TTTTCGATCCACTTCCTACCAATATAGGAAGACATA-ACCTACCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACA-AGACCTGCCA
* * * * * * **
8477783 TATTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGACCTGCCA
*
8477827 TCTTCGATCCACTTCCTACCAATATAGGAAGACGAGACCTG-CA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* *
8477870 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACTTGCCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* * * * * * **
8477914 TATTCGATCTAATT-C-ACGCTAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCCACTTCCTAC-C-AATATAGGAAGACAAGACCTGCCA
* *
8477958 TCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGCCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* * *** * * * * * **
8478002 TCTTCGATCTACTTCATGTTAATACATGAAGATAAGATCTACTT
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* *
8478046 TCTTCGATCCACTTCCTACCAATATAGGAATACATGACCTG-CA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* * **
8478089 TCTTCGATCCACTTCCTACCAATATAAGAAGACATGACCTGTAA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
* * * * *
8478133 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGC
1 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGACCTGC
8478175 TTTAATGTCT
Statistics
Matches: 435, Mismatches: 118, Indels: 30
0.75 0.20 0.05
Matches are distributed among these distances:
42 2 0.00
43 117 0.27
44 290 0.67
45 24 0.06
46 2 0.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (44 bp):
TCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACCTGCCA
Found at i:8484737 original size:13 final size:14
Alignment explanation
Indices: 8484719--8484753 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
8484709 TGGGCCTTTC
8484719 ATTTTGGACTG-TA
1 ATTTTGGACTGTTA
8484732 ATTTTGGACTGTTTA
1 ATTTTGGACTG-TTA
8484747 ATTTTGG
1 ATTTTGG
8484754 GTTTTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 11 0.55
15 9 0.45
ACGTcount: A:0.20, C:0.06, G:0.23, T:0.51
Consensus pattern (14 bp):
ATTTTGGACTGTTA
Found at i:8486384 original size:16 final size:16
Alignment explanation
Indices: 8486365--8486397 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8486355 ATAAGATTTA
8486365 ATATTAAATTT-ATATT
1 ATATT-AATTTAATATT
8486381 ATATTAATTTAATATT
1 ATATTAATTTAATATT
8486397 A
1 A
8486398 AAGTGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATATTAATTTAATATT
Found at i:8488496 original size:2 final size:2
Alignment explanation
Indices: 8488489--8488518 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8488479 GCAAGCTGAA
*
8488489 AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8488519 TGCAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8504363 original size:13 final size:14
Alignment explanation
Indices: 8504332--8504365 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8504322 ATGTAAAAGG
* *
8504332 AAAAAAATTAAACT
1 AAAAAAATAAAAAT
8504346 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
8504360 AAAAAA
1 AAAAAA
8504366 GCATAGTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:8504980 original size:41 final size:41
Alignment explanation
Indices: 8504923--8505005 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
8504913 AAGGGTTACT
8504923 ATGTTTTTTAAGCCATATTATAGGAGGTTAACAATAGTCCA
1 ATGTTTTTTAAGCCATATTATAGGAGGTTAACAATAGTCCA
8504964 ATGTTTTTTAAGCCATATTATAGGAGGTTAACAATAGTCCA
1 ATGTTTTTTAAGCCATATTATAGGAGGTTAACAATAGTCCA
8505005 A
1 A
8505006 CAAAGAGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (41 bp):
ATGTTTTTTAAGCCATATTATAGGAGGTTAACAATAGTCCA
Found at i:8534175 original size:21 final size:21
Alignment explanation
Indices: 8534128--8534179 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
8534118 GCGGTGGTGG
* **
8534128 TGAGATTAGTTACTGTAGCGG
1 TGAGATTAGATACTGTAGCAA
* *
8534149 TAAGATTGGATACTGTAGCAA
1 TGAGATTAGATACTGTAGCAA
8534170 TGAGATTAGA
1 TGAGATTAGA
8534180 AACAATGGTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (21 bp):
TGAGATTAGATACTGTAGCAA
Found at i:8536476 original size:22 final size:22
Alignment explanation
Indices: 8536451--8536510 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
8536441 GAAATAAAAT
8536451 AAAATCTGGAAAATGACATGCC
1 AAAATCTGGAAAATGACATGCC
8536473 AAAATCTGGAAAATGACATGCC
1 AAAATCTGGAAAATGACATGCC
*
8536495 AAAGTCTGGAAAATGA
1 AAAATCTGGAAAATGA
8536511 ATTACCTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (22 bp):
AAAATCTGGAAAATGACATGCC
Found at i:8548338 original size:19 final size:20
Alignment explanation
Indices: 8548314--8548352 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8548304 AATGTTCTTT
*
8548314 CATTCTTT-ACATTTTTTTC
1 CATTCTTTCAAATTTTTTTC
8548333 CATTCTTTCAAATTTTTTTC
1 CATTCTTTCAAATTTTTTTC
8548353 TGCCAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.62
Consensus pattern (20 bp):
CATTCTTTCAAATTTTTTTC
Found at i:8551826 original size:44 final size:44
Alignment explanation
Indices: 8551630--8551827 Score: 132
Period size: 44 Copynumber: 4.5 Consensus size: 44
8551620 CCAACAATTC
** * *
8551630 TATCTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCT
1 TATCTCCCTAAGCAGCAGTGGAATAGATTGAAGATTACAGATCT
** * ** * ** * *
8551674 TCCCTCCCTAAGCAGTAGTGGAGCAGATTGAGGATGGCGGATTT
1 TATCTCCCTAAGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * ** * * * *
8551718 TACCTCTCTGAAGTTGCAGTGGAGTACATTGAAGCCAATA-A-TTC-
1 TATCTCCCT-AAGCAGCAGTGGAATAGATTGAAG--ATTACAGATCT
*
8551762 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAAGCAGCAGTGGAATAGATTGAAGATTACAGATCT
*
8551806 TATCTCCCTAAGCAGTAGTGGA
1 TATCTCCCTAAGCAGCAGTGGA
8551828 GCAGATCAAA
Statistics
Matches: 110, Mismatches: 38, Indels: 12
0.69 0.24 0.08
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 21 0.19
44 65 0.59
45 19 0.17
47 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (44 bp):
TATCTCCCTAAGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:8552080 original size:132 final size:132
Alignment explanation
Indices: 8550600--8552020 Score: 1869
Period size: 132 Copynumber: 10.8 Consensus size: 132
8550590 GTGGAGCAAG
*
8550600 TTGAAGATTTCAGATCTTGTCT-CCTCAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTAC
1 TTGAAGATTTCAGATCTTGTCTCCCT-AAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTAC
* * * * *
8550664 CTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGTAATTCTACTTCCTTGGGCAGCAGCGAAAT
65 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
8550729 AGA
130 AGA
* * * ** * * * * *
8550732 TTGAAGATTACAGATCTTATCTTCCTGCGTAGACAGTGAAGCAGATCGAAGATGGTGAATTTTAC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAG-TAGTGGAGCAGATCAAAGATGGTGGATTTTAC
* *
8550797 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
65 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
8550862 AGA
130 AGA
* * * * *
8550865 TTGAAGATTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCAAGGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
*
8550930 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
*
8550995 CA
131 GA
* *
8550997 TTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * * *
8551062 TCCCTGTGGTTACAGTAGAGTACATTGAA-CCTAGTAATTCTACTTCCCTGTGCAGTAGTGGAAT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCC-AGTAATTCTACTTCCCTGGGCAGCAGTGGAAT
8551126 AGA
130 AGA
* * * * *
8551129 TTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGCGCAGCAAATCAAAGATGGTGAATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * * * * *
8551194 TCACTGTGGTTACAGTAGAGTATATTGAAGCCAGTAATTCTACTTCTCTGGGCAGCAGCGGAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
8551259 GA
131 GA
* * * **
8551261 TTAAAGATTTCAGATCTTGCCTCCCTAAGCAGTACTGGAGCAGATCGGAGATGGTGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * * * *
8551326 TCCCTGAAGTTGCAGTGGAGTACATTGAAGCCATTAATTCTACTTCCCTGGGCAGCAGCGAAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
8551391 GA
131 GA
* * * * * **
8551393 TTGAAGATTTTAGATCTTGCCTCCCTAAGCAATAGTGGAGCAGATCGAATATGGCAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * ** * **
8551458 TACCTGAAGTTGTAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTGGGCAGCAACGGAATA
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
8551523 GA
131 GA
* * * *
8551525 TTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCGAGGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * * * ** *
8551590 TCTCGGAAGTTGCAGTGGAGTACATTGAAGCCAACAATTCTA-TCTCCCTGGGCAGCAGTAGAAT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAAT
8551654 AGA
130 AGA
** ** * *
8551657 TTGAAGATTTCAGATCTTCCCTCCCTAAGCAGTAGTGGAGCAGATTGAGGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * * * *
8551722 TCTCTGAAGTTGCAGTGGAGTACATTGAAGCCAATAATTCTA-TCTCCCTAGGCAGCAGTGGAAT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGGAAT
8551786 AGA
130 AGA
* * *
8551789 TTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* * *
8551854 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATTTCCCTGGGCAACAGTGGAATT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
8551919 GA
131 GA
* * * *
8551921 TTGAAGATTTCAGATCTTGTCTCTCTAAGCAGTGGTGGAGCAGATCAAAGATAGTAGATTTTACC
1 TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
* *
8551986 TCCATGTGGTTACAGTGGAGTACATTGAAGCCAGT
66 TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
8552021 TACCTTATTT
Statistics
Matches: 1160, Mismatches: 123, Indels: 12
0.90 0.09 0.01
Matches are distributed among these distances:
131 3 0.00
132 1032 0.89
133 125 0.11
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
TTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACC
TCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATA
GA
Found at i:8567627 original size:34 final size:34
Alignment explanation
Indices: 8567582--8567646 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 34
8567572 TATCAATTGA
8567582 AAATTAAAAAAATAT-AAAAATTTTAAATTATAT
1 AAATTAAAAAAATATAAAAAATTTTAAATTATAT
*
8567615 AAATTAATAAAAATATAAAAAATTTTACATTA
1 AAATTAA-AAAAATATAAAAAATTTTAAATTA
8567647 AGAATGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 7 0.24
34 8 0.28
35 14 0.48
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (34 bp):
AAATTAAAAAAATATAAAAAATTTTAAATTATAT
Found at i:8567631 original size:18 final size:18
Alignment explanation
Indices: 8567581--8567635 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 18
8567571 TTATCAATTG
8567581 AAAATTAA-AAAAATATA
1 AAAATTAATAAAAATATA
* *
8567598 AAAATT--TTAAATTATA
1 AAAATTAATAAAAATATA
*
8567614 TAAATTAATAAAAATATA
1 AAAATTAATAAAAATATA
8567632 AAAA
1 AAAA
8567636 ATTTTACATT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
16 12 0.41
17 6 0.21
18 11 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATTAATAAAAATATA
Found at i:8567767 original size:7 final size:7
Alignment explanation
Indices: 8567733--8567782 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
8567723 CTTTTTAGTA
8567733 TATATAT
1 TATATAT
8567740 T-TATAAT
1 TATAT-AT
*
8567747 T-TTTAT
1 TATATAT
8567753 TA-AT-T
1 TATATAT
8567758 TATATAT
1 TATATAT
8567765 TATATAT
1 TATATAT
8567772 TATATAT
1 TATATAT
8567779 TATA
1 TATA
8567783 AATTTTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 3 0.08
6 9 0.24
7 25 0.68
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATATAT
Found at i:8567855 original size:16 final size:17
Alignment explanation
Indices: 8567836--8567868 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8567826 TTTAATGGTA
*
8567836 CATAATTTTAT-ATTTT
1 CATAAATTTATAATTTT
8567852 CATAAATTTATAATTTT
1 CATAAATTTATAATTTT
8567869 ATATTGTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
CATAAATTTATAATTTT
Found at i:8568193 original size:2 final size:2
Alignment explanation
Indices: 8568176--8568215 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
8568166 AGATGATAAA
*
8568176 AT AT -T AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8568216 AGAAATGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:8569763 original size:20 final size:20
Alignment explanation
Indices: 8569731--8569769 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8569721 ATTTAATGGT
8569731 TATATTTAAATATT-TAAAA
1 TATATTTAAATATTCTAAAA
*
8569750 TATAGTTTATATATTCTAAA
1 TATA-TTTAAATATTCTAAA
8569770 TAAATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TATATTTAAATATTCTAAAA
Found at i:8596666 original size:29 final size:29
Alignment explanation
Indices: 8596591--8596666 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 29
8596581 ACTTTGTTAC
* ***
8596591 TTTATTTACATTATGACTTTTGGTGATTT
1 TTTATTTATATTATGACTTTTGGTGACGA
8596620 TTAATATTTATATTATGACTTTTGGTGACGA
1 TT--TATTTATATTATGACTTTTGGTGACGA
8596651 TTTATTTATATTATGA
1 TTTATTTATATTATGA
8596667 GTTTGTGCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
29 16 0.39
31 25 0.61
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.55
Consensus pattern (29 bp):
TTTATTTATATTATGACTTTTGGTGACGA
Found at i:8597625 original size:9 final size:9
Alignment explanation
Indices: 8597544--8597632 Score: 54
Period size: 9 Copynumber: 9.2 Consensus size: 9
8597534 AGTGGTTTCT
8597544 TAAATAATTA
1 TAAA-AATTA
*
8597554 TAAAAATATT
1 TAAAAAT-TA
8597564 TAAAAATTA
1 TAAAAATTA
**
8597573 TTATGAATTA
1 -TAAAAATTA
8597583 TAAGAAAATT-
1 T-A-AAAATTA
*
8597593 TAAATAACTTT
1 TAAA-AA-TTA
* *
8597604 TAAAAGTTT
1 TAAAAATTA
8597613 TAAAAATTA
1 TAAAAATTA
8597622 TAAAAATTA
1 TAAAAATTA
8597631 TA
1 TA
8597633 TATACACACG
Statistics
Matches: 63, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
8 2 0.03
9 29 0.46
10 24 0.38
11 8 0.13
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.39
Consensus pattern (9 bp):
TAAAAATTA
Found at i:8600747 original size:17 final size:17
Alignment explanation
Indices: 8600710--8600751 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
8600700 TTGGATGTAC
*
8600710 TTTTTAATTTTTCAGAT
1 TTTTTAATTTTTCAAAT
*
8600727 TTTTTAATTTTTAAATAT
1 TTTTTAATTTTTCAA-AT
8600745 TTTTTAA
1 TTTTTAA
8600752 GATGGCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTTAATTTTTCAAAT
Found at i:8601015 original size:21 final size:20
Alignment explanation
Indices: 8600970--8601015 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
8600960 ACATAAAAAA
*
8600970 TTTTACCTAATCCATGGTAC
1 TTTTACCTAATCCATCGTAC
8600990 TTTTACCTAATCCTACTCGT-C
1 TTTTACCTAATCC-A-TCGTAC
8601011 TTTTA
1 TTTTA
8601016 ATTCCATGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 13 0.57
21 7 0.30
22 3 0.13
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.46
Consensus pattern (20 bp):
TTTTACCTAATCCATCGTAC
Found at i:8601721 original size:12 final size:13
Alignment explanation
Indices: 8601688--8601726 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
8601678 CCTACTCCCA
8601688 ATTATAATAATA-
1 ATTATAATAATAT
*
8601700 ATAATAATAATAT
1 ATTATAATAATAT
8601713 ATTAT-ATAATAT
1 ATTATAATAATAT
8601725 AT
1 AT
8601727 CTTGAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTATAATAATAT
Found at i:8601954 original size:15 final size:16
Alignment explanation
Indices: 8601936--8601972 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
8601926 ATAATTAAAG
8601936 AATAAATATAAAT-AT
1 AATAAATATAAATGAT
8601951 AATAAA-ATAAATGAT
1 AATAAATATAAATGAT
8601966 AA-AAATA
1 AATAAATA
8601973 CAAAACAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AATAAATATAAATGAT
Found at i:8601977 original size:20 final size:20
Alignment explanation
Indices: 8601936--8601977 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
8601926 ATAATTAAAG
* *
8601936 AATAAATATAAATATAATAA
1 AATAAATATAAAAATAACAA
8601956 AATAAATGATAAAAAT-ACAA
1 AATAAAT-ATAAAAATAACAA
8601976 AA
1 AA
8601978 CAAGAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AATAAATATAAAAATAACAA
Found at i:8603131 original size:15 final size:15
Alignment explanation
Indices: 8603111--8603141 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8603101 ATAATAATAT
8603111 TTATTAAATATTTAA
1 TTATTAAATATTTAA
*
8603126 TTATTAATTATTTAA
1 TTATTAAATATTTAA
8603141 T
1 T
8603142 ATTTTTTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATTAAATATTTAA
Found at i:8606703 original size:13 final size:13
Alignment explanation
Indices: 8606685--8606709 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8606675 GATATAGAAA
8606685 AATATTTTAAAAT
1 AATATTTTAAAAT
8606698 AATATTTTAAAA
1 AATATTTTAAAA
8606710 AAAAGGGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATATTTTAAAAT
Found at i:8612684 original size:20 final size:20
Alignment explanation
Indices: 8612659--8612701 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8612649 GAGTGAATTT
* *
8612659 TAATATGAAATATTCATCAA
1 TAATATAAAATACTCATCAA
*
8612679 TAATATAAAATACTCATTAA
1 TAATATAAAATACTCATCAA
8612699 TAA
1 TAA
8612702 ACTCCACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.35
Consensus pattern (20 bp):
TAATATAAAATACTCATCAA
Found at i:8615554 original size:17 final size:19
Alignment explanation
Indices: 8615520--8615556 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
8615510 TTATTTAAGT
8615520 ATAAATTATTATAAAATCA
1 ATAAATTATTATAAAATCA
8615539 ATAAATTA-TA-AAAATCA
1 ATAAATTATTATAAAATCA
8615556 A
1 A
8615557 CTGATCTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAATTATTATAAAATCA
Found at i:8625300 original size:22 final size:20
Alignment explanation
Indices: 8625254--8625308 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
8625244 TATTGTTAAT
8625254 TATAAATTTAAATATAATTA
1 TATAAATTTAAATATAATTA
*
8625274 TATAATATTTAAA-ATATATTT
1 TATAA-ATTTAAATATA-ATTA
8625295 TCATAAA-TTAAATA
1 T-ATAAATTTAAATA
8625309 GTTATCATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 13 0.43
21 13 0.43
22 4 0.13
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TATAAATTTAAATATAATTA
Found at i:8633624 original size:18 final size:19
Alignment explanation
Indices: 8633586--8633682 Score: 78
Period size: 19 Copynumber: 5.3 Consensus size: 19
8633576 TTTATCATAC
8633586 AAATTATAAAAAATCAT-AA
1 AAATTATAAAAAAT-ATAAA
*
8633605 AAATTAT-TAAAATATAAA
1 AAATTATAAAAAATATAAA
* * * *
8633623 AAATAATCAAAAATTTTAA
1 AAATTATAAAAAATATAAA
* *
8633642 AAATTAT--TAAATTTAAA
1 AAATTATAAAAAATATAAA
8633659 AAATT-TAAAAAATATATAA
1 AAATTATAAAAAATATA-AA
8633678 AAATT
1 AAATT
8633683 GATATAAATT
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
16 1 0.02
17 15 0.24
18 19 0.30
19 28 0.44
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATTATAAAAAATATAAA
Found at i:8633625 original size:9 final size:9
Alignment explanation
Indices: 8633590--8633681 Score: 62
Period size: 9 Copynumber: 10.1 Consensus size: 9
8633580 TCATACAAAT
8633590 TATAAAAAA
1 TATAAAAAA
*
8633599 TCATAAAAAT
1 T-ATAAAAAA
*
8633609 TAT-TAAAA
1 TATAAAAAA
8633617 TATAAAAAA
1 TATAAAAAA
*
8633626 TAATCAAAAA
1 T-ATAAAAAA
* *
8633636 TTTTAAAAA
1 TATAAAAAA
**
8633645 T-TATTAAA
1 TATAAAAAA
*
8633653 TTTAAAAAA
1 TATAAAAAA
*
8633662 TTTAAAAAA
1 TATAAAAAA
8633671 TATATAAAAA
1 TATA-AAAAA
8633681 T
1 T
8633682 TGATATAAAT
Statistics
Matches: 65, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
8 11 0.17
9 32 0.49
10 22 0.34
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
TATAAAAAA
Found at i:8633625 original size:27 final size:27
Alignment explanation
Indices: 8633590--8633643 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8633580 TCATACAAAT
*
8633590 TATAAAAAATCAT-AAAAATTATTAAAA
1 TATAAAAAATAATCAAAAATT-TTAAAA
8633617 TATAAAAAATAATCAAAAATTTTAAAA
1 TATAAAAAATAATCAAAAATTTTAAAA
8633644 ATTATTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (27 bp):
TATAAAAAATAATCAAAAATTTTAAAA
Found at i:8633744 original size:21 final size:20
Alignment explanation
Indices: 8633720--8633765 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
8633710 ATAAAAATAT
**
8633720 AAAATAATCTAATAAATTATA
1 AAAATAATAAAATAAATT-TA
*
8633741 AAAATAATAAAATATATTTA
1 AAAATAATAAAATAAATTTA
8633761 AAAAT
1 AAAAT
8633766 TTATAAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATAATAAAATAAATTTA
Found at i:8633750 original size:9 final size:9
Alignment explanation
Indices: 8633586--8633854 Score: 129
Period size: 10 Copynumber: 28.3 Consensus size: 9
8633576 TTTATCATAC
8633586 AAATTATAAA
1 AAATTAT-AA
*
8633596 AAATCATAA
1 AAATTATAA
*
8633605 AAATTATTA
1 AAATTATAA
8633614 AAA-TATAAA
1 AAATTAT-AA
*
8633623 AAATAATCAA
1 AAATTAT-AA
*
8633633 AAATTTTAA
1 AAATTATAA
*
8633642 AAATTATTA
1 AAATTATAA
*
8633651 AATTTA-AA
1 AAATTATAA
8633659 AAATT-TAAA
1 AAATTAT-AA
8633668 AAATATATAA
1 AAAT-TATAA
*
8633678 AAATTGATAT
1 AAATT-ATAA
*
8633688 AAATT-TAT
1 AAATTATAA
8633696 AAA-TATTAA
1 AAATTA-TAA
*
8633705 ATATTATAA
1 AAATTATAA
8633714 AAA-TATAA
1 AAATTATAA
* *
8633722 AATAATCTAA
1 AA-ATTATAA
8633732 TAAATTATAA
1 -AAATTATAA
*
8633742 AAATAATAA
1 AAATTATAA
*
8633751 AATATATTTAA
1 AA-AT-TATAA
8633762 AAATTTATAA
1 AAA-TTATAA
*
8633772 AAACGTATTAA
1 AAA-TTA-TAA
*
8633783 AATTCTATAA
1 AAAT-TATAA
*
8633793 AAATCT-TTA
1 AAAT-TATAA
8633802 AAATTATAA
1 AAATTATAA
*
8633811 ATATATATCTAA
1 A-A-AT-TATAA
*
8633823 AATTTATATA
1 AAATTATA-A
*
8633833 AACTTATAA
1 AAATTATAA
8633842 AAATTACTAA
1 AAATTA-TAA
8633852 AAA
1 AAA
8633855 AACATAATAA
Statistics
Matches: 199, Mismatches: 36, Indels: 48
0.70 0.13 0.17
Matches are distributed among these distances:
7 1 0.01
8 22 0.11
9 75 0.38
10 77 0.39
11 19 0.10
12 5 0.03
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (9 bp):
AAATTATAA
Found at i:8633772 original size:37 final size:35
Alignment explanation
Indices: 8633666--8633772 Score: 83
Period size: 37 Copynumber: 2.9 Consensus size: 35
8633656 AAAAAATTTA
*
8633666 AAAAATATATAAAAAT-TGATATAAATTTATAAATATT
1 AAAAATA-ATAAAAATAT-A-AAAAATTTATAAATATT
* * *
8633703 AAATATTATAAAAATATAAAATAATCTAATAAAT-TAT
1 AAAAATAATAAAAATATAAAA-AAT-TTATAAATAT-T
*
8633740 AAAAATAATAAAATATATTTAAAAATTTATAAA
1 AAAAATAATAAAA-ATA-TAAAAAATTTATAAA
8633773 AACGTATTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
35 2 0.04
36 13 0.23
37 31 0.55
38 6 0.11
39 4 0.07
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.36
Consensus pattern (35 bp):
AAAAATAATAAAAATATAAAAAATTTATAAATATT
Found at i:8633845 original size:60 final size:61
Alignment explanation
Indices: 8633741--8633856 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 61
8633731 ATAAATTATA
* * *
8633741 AAAATAATAAAATATATTTAAAAATTTATAAAAACGTATTAAAATT-CTATAAAAATCTTT
1 AAAATAATAAAATATATCTAAAAATTTATAAAAACGTATAAAAATTACTAAAAAAATCTTT
* * *
8633801 AAAATTATAAATATATATCT-AAAATTTATATAAACTTATAAAAATTACTAAAAAAA
1 AAAATAATAAA-ATATATCTAAAAATTTATAAAAACGTATAAAAATTACTAAAAAAA
8633857 CATAATAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 33 0.69
61 15 0.31
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (61 bp):
AAAATAATAAAATATATCTAAAAATTTATAAAAACGTATAAAAATTACTAAAAAAATCTTT
Found at i:8634398 original size:18 final size:17
Alignment explanation
Indices: 8634357--8634422 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 17
8634347 ATTTTAAATA
*
8634357 AATTTTATTAAT-TTTTT
1 AATTTT-TTAATATTTAT
*
8634374 ATATTTTATAATATTTAT
1 A-ATTTTTTAATATTTAT
8634392 AAGTTTTTTTATATATTTAT
1 AA--TTTTTTA-ATATTTAT
8634412 AA-TTTTTAATA
1 AATTTTTTAATA
8634423 AGTTTATATC
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
16 3 0.07
17 12 0.29
18 10 0.24
19 6 0.15
20 10 0.24
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
AATTTTTTAATATTTAT
Found at i:8634400 original size:29 final size:30
Alignment explanation
Indices: 8634368--8634427 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 30
8634358 ATTTTATTAA
8634368 TTTTTTATAT-TTTATAATATTT-ATAAGT
1 TTTTTTATATATTTATAATATTTAATAAGT
*
8634396 TTTTTTATATATTTATAATTTTTAATAAGT
1 TTTTTTATATATTTATAATATTTAATAAGT
8634426 TT
1 TT
8634428 ATATCAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 10 0.34
29 11 0.38
30 8 0.28
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (30 bp):
TTTTTTATATATTTATAATATTTAATAAGT
Found at i:8634407 original size:20 final size:20
Alignment explanation
Indices: 8634377--8634418 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8634367 ATTTTTTATA
8634377 TTTTATAATATTTATAAGTTT
1 TTTTATAATATTTATAA-TTT
8634398 TTTTAT-ATATTTATAATTT
1 TTTTATAATATTTATAATTT
8634417 TT
1 TT
8634419 AATAAGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
20 10 0.48
21 6 0.29
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTATAATATTTATAATTT
Found at i:8634439 original size:29 final size:29
Alignment explanation
Indices: 8634374--8634451 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
8634364 TTAATTTTTT
* * *
8634374 ATATTTTATAATATTT-ATAAGTTTTTTT
1 ATATTTTATAATTTTTAATAAGTTTTATC
8634402 ATATATTTATAATTTTTAATAAGTTTATATC
1 ATAT-TTTATAATTTTTAATAAGTTT-TATC
8634433 A-ATTTTA-ATATTTTTAATA
1 ATATTTTATA-ATTTTTAATA
8634452 TTTAATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
28 5 0.12
29 25 0.58
30 10 0.23
31 3 0.07
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (29 bp):
ATATTTTATAATTTTTAATAAGTTTTATC
Found at i:8634463 original size:15 final size:16
Alignment explanation
Indices: 8634436--8634466 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8634426 TTATATCAAT
8634436 TTTAATATTTTTAATA
1 TTTAATATTTTTAATA
8634452 TTTAAT-TTTTTAATA
1 TTTAATATTTTTAATA
8634467 ATGTTTTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTAATATTTTTAATA
Found at i:8634485 original size:12 final size:12
Alignment explanation
Indices: 8634470--8634508 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8634460 TTTAATAATG
*
8634470 TTTTCTGATTTT
1 TTTTCTAATTTT
*
8634482 TTTTATAATTTT
1 TTTTCTAATTTT
8634494 TTTATCTAATTTT
1 TTT-TCTAATTTT
8634507 TT
1 TT
8634509 ATAATTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTCTAATTTT
Found at i:8634493 original size:11 final size:11
Alignment explanation
Indices: 8634479--8634517 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
8634469 GTTTTCTGAT
8634479 TTTTTTTATAA
1 TTTTTTTATAA
8634490 TTTTTTTATCTAA
1 TTTTTTTA--TAA
8634503 -TTTTTTATAA
1 TTTTTTTATAA
8634513 TTTTT
1 TTTTT
8634518 ATGAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.12
11 12 0.48
12 7 0.28
13 3 0.12
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTTTATAA
Done.