Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 28 of 228
Found at i:8971085 original size:17 final size:17
Alignment explanation
Indices: 8971063--8971126 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
8971053 CATCAAAGGC
*
8971063 TACAATTAAAAGCTGTA
1 TACAATTAGAAGCTGTA
*
8971080 TACAATTAGAA-CTCTAA
1 TACAATTAGAAGCTGT-A
*
8971097 GACATAATTAGAAGCTGTA
1 TAC--AATTAGAAGCTGTA
8971116 TACAATTAGAA
1 TACAATTAGAA
8971127 CTCTAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
19 11 0.29
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:8971107 original size:19 final size:17
Alignment explanation
Indices: 8971081--8971134 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
8971071 AAAGCTGTAT
8971081 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
* *
8971098 ACATAATTAGAAGCTGT-AT
1 AC--AATTAGAA-CTCTAAG
8971117 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
8971134 A
1 A
8971135 TTAAATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 3 0.10
17 12 0.41
19 11 0.38
20 3 0.10
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (17 bp):
ACAATTAGAACTCTAAG
Found at i:8971113 original size:36 final size:36
Alignment explanation
Indices: 8971066--8971134 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
8971056 CAAAGGCTAC
8971066 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
*
8971102 AATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGA
8971135 TTAAATAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (36 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGACAT
Found at i:8975356 original size:13 final size:13
Alignment explanation
Indices: 8975338--8975362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8975328 TATTTTAATA
8975338 TTATTTTGTGTGT
1 TTATTTTGTGTGT
8975351 TTATTTTGTGTG
1 TTATTTTGTGTG
8975363 CATTCGATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:8977102 original size:41 final size:41
Alignment explanation
Indices: 8976895--8977091 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
8976885 TTTATCGTTA
* * * *
8976895 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
8976936 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
8976977 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
8977018 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
8977059 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
8977092 AAGAGCCGGT
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 143 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:8977360 original size:33 final size:32
Alignment explanation
Indices: 8977305--8977367 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
8977295 GATAGATATG
8977305 TATATATATATGTTGCATTCGGCATAGGTGGA
1 TATATATATATGTTGCATTCGGCATAGGTGGA
* *
8977337 TATATTTATGTGTATGCATTCGGCATAGGTG
1 TATATATATATGT-TGCATTCGGCATAGGTG
8977368 AAAATAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (32 bp):
TATATATATATGTTGCATTCGGCATAGGTGGA
Found at i:8977384 original size:33 final size:33
Alignment explanation
Indices: 8977311--8977384 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
8977301 TATGTATATA
* * **
8977311 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
8977343 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
8977376 TGTATGTAT
1 TATATGTAT
8977385 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:8983030 original size:13 final size:13
Alignment explanation
Indices: 8983012--8983036 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8983002 TATTTTAATA
8983012 TTATTTTGTGTGT
1 TTATTTTGTGTGT
8983025 TTATTTTGTGTG
1 TTATTTTGTGTG
8983037 CATTCGATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:8984775 original size:41 final size:41
Alignment explanation
Indices: 8984568--8984764 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
8984558 TTTATCGTTA
* * * *
8984568 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
8984609 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
8984650 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
8984691 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
8984732 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
8984765 AAGAGCCGGT
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 143 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:8985033 original size:33 final size:32
Alignment explanation
Indices: 8984978--8985040 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
8984968 GATAGATATG
8984978 TATATATATATGTTGCATTCGGCATAGGTGGA
1 TATATATATATGTTGCATTCGGCATAGGTGGA
* *
8985010 TATATTTATGTGTATGCATTCGGCATAGGTG
1 TATATATATATGT-TGCATTCGGCATAGGTG
8985041 AAAATAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (32 bp):
TATATATATATGTTGCATTCGGCATAGGTGGA
Found at i:8985057 original size:33 final size:33
Alignment explanation
Indices: 8984984--8985057 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
8984974 TATGTATATA
* * **
8984984 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
8985016 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
8985049 TGTATGTAT
1 TATATGTAT
8985058 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:8986742 original size:36 final size:36
Alignment explanation
Indices: 8986688--8986756 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
8986678 CAAAGGCTAC
8986688 AATTAAAAGCAGTATACAATTAGAACTCTAAGACAT
1 AATTAAAAGCAGTATACAATTAGAACTCTAAGACAT
* * *
8986724 AATTAGAAGCTGTTTACAATTAGAACTCTAAGA
1 AATTAAAAGCAGTATACAATTAGAACTCTAAGA
8986757 TTAAATAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (36 bp):
AATTAAAAGCAGTATACAATTAGAACTCTAAGACAT
Found at i:8987419 original size:18 final size:18
Alignment explanation
Indices: 8987396--8987430 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8987386 ATTTAACTCT
*
8987396 AATTTCTCCTTTTATTTC
1 AATTTCTCATTTTATTTC
*
8987414 AATTTCTTATTTTATTT
1 AATTTCTCATTTTATTT
8987431 ATATATAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.66
Consensus pattern (18 bp):
AATTTCTCATTTTATTTC
Found at i:8989836 original size:21 final size:22
Alignment explanation
Indices: 8989812--8989854 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8989802 AATGTCCAGC
*
8989812 AACAAAAAAT-CAAGAAAATAG
1 AACAAAAAATGAAAGAAAATAG
*
8989833 AACAAGAAATGAAAGAAAATAG
1 AACAAAAAATGAAAGAAAATAG
8989855 GCGATAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (22 bp):
AACAAAAAATGAAAGAAAATAG
Found at i:8990264 original size:42 final size:42
Alignment explanation
Indices: 8990217--8990365 Score: 120
Period size: 42 Copynumber: 3.5 Consensus size: 42
8990207 AGGTTTATAC
* ** * *
8990217 TTCGATTTATCCGACGATGCATTTGTGTGTCAGTATATTTGA
1 TTCGATTTATCCGATGATGCACCTATGTGTCAGTATAATTGA
* * *
8990259 TTCGATTCATCCAATGATGCACCTATGTGTCAGTATAATTGC
1 TTCGATTTATCCGATGATGCACCTATGTGTCAGTATAATTGA
* * * * ** **
8990301 TTCGACTTATTCGATGATGC-TCTATGTATGCTAGTATGTTTCC
1 TTCGATTTATCCGATGATGCACCTATGTGT-C-AGTATAATTGA
*
8990344 TTCGACTTATCCGATGATGCAC
1 TTCGATTTATCCGATGATGCAC
8990366 TACAAGTGCT
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
41 7 0.08
42 51 0.60
43 27 0.32
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (42 bp):
TTCGATTTATCCGATGATGCACCTATGTGTCAGTATAATTGA
Found at i:8990376 original size:43 final size:42
Alignment explanation
Indices: 8990300--8990412 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
8990290 AGTATAATTG
* * ** * *
8990300 CTTCGACTTATTCGATGATGCTCTATGTATGCTAGTATGTTTC
1 CTTCGACTTATCCGATGATGCACTA-CAATGCTAATATATTTC
8990343 CTTCGACTTATCCGATGATGCACTACAAGTGCTAATATATTTC
1 CTTCGACTTATCCGATGATGCACTACAA-TGCTAATATATTTC
* * *
8990386 CTTTGATTTATCCGGTGATGCACTACA
1 CTTCGACTTATCCGATGATGCACTACA
8990413 GTGTCAGATT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 1 0.02
43 59 0.98
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (42 bp):
CTTCGACTTATCCGATGATGCACTACAATGCTAATATATTTC
Found at i:8990997 original size:22 final size:21
Alignment explanation
Indices: 8990967--8991011 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
8990957 ACACTAAAAC
*
8990967 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCG-TTTTTT
8990989 AGGCCTTTAGCGGCGTTTTTT
1 AGGCCTTTAGCGGCGTTTTTT
8991010 AG
1 AG
8991012 CAACGCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.11, C:0.18, G:0.29, T:0.42
Consensus pattern (21 bp):
AGGCCTTTAGCGGCGTTTTTT
Found at i:8991196 original size:43 final size:43
Alignment explanation
Indices: 8991144--8991261 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
8991134 CGCTTCTAGC
* * *
8991144 ACAAACGCCGTTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGG
1 ACAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTT-TGGGG
* * * *
8991188 A-AAGCGCCGCTAAAGATCAGGGTTTTTAGCGGCGTTTTTGTG
1 ACAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTTTGGGG
* *
8991230 ACAGGCGCCGCTAAAGATTAAGGTCTTTAGCG
1 ACAAGCGCCGCTAAAGATCAAGGTCTTTAGCG
8991262 ACGCTTTTCC
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 4 0.06
43 58 0.92
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
ACAAGCGCCGCTAAAGATCAAGGTCTTTAGCGGCGTTTTGGGG
Found at i:8991302 original size:86 final size:85
Alignment explanation
Indices: 8991212--8991398 Score: 212
Period size: 86 Copynumber: 2.2 Consensus size: 85
8991202 GATCAGGGTT
** ** ** *
8991212 TTTAGCGGCGTTTTTGTGACAGGCGCCGCTAAAGATTAAGGTCTTTAGCGACGCTTTTCCCACAA
1 TTTAGCGGCGTTTTT-CCACAAACGCCGCTAAAGACCAAGATCTTTAGCGACGCTTTTCCCACAA
* *
8991277 ACTCCATTAAAGACCCTGATC
65 ACGCCACTAAAGACCCTGATC
* * * * *
8991298 TTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCATGATCTTTAGTGTCGCTTTTTCCACAA
1 TTTAGCGGCG-TTTTTCCACAAACGCCGCTAAAGACCAAGATCTTTAGCGACGCTTTTCCCACAA
* *
8991363 ACGCCGCTAAAGACCCTTATC
65 ACGCCACTAAAGACCCTGATC
8991384 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
8991399 TACCGAAAAT
Statistics
Matches: 83, Mismatches: 17, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
85 4 0.05
86 75 0.90
87 4 0.05
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (85 bp):
TTTAGCGGCGTTTTTCCACAAACGCCGCTAAAGACCAAGATCTTTAGCGACGCTTTTCCCACAAA
CGCCACTAAAGACCCTGATC
Found at i:8991399 original size:43 final size:43
Alignment explanation
Indices: 8991253--8991399 Score: 195
Period size: 43 Copynumber: 3.4 Consensus size: 43
8991243 AAGATTAAGG
* * * **
8991253 TCTTTAGCGACGCTTTTCCCACAAACTCCATTAAAGACCCTGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
* *
8991296 TCTTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCATGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
* * *
8991339 TCTTTAGTGTCGCTTTTTCCACAAACGCCGCTAAAGACCCTTA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
*
8991382 TCTTTAGCGGCGTTTTTT
1 TCTTTAGCGGCGCTTTTT
8991400 ACCGAAAATG
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
Found at i:8991874 original size:21 final size:21
Alignment explanation
Indices: 8991770--8991871 Score: 123
Period size: 21 Copynumber: 4.9 Consensus size: 21
8991760 TTTGACGCTG
*
8991770 CTCTGCTTCCCTCGCTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
**
8991791 CTCTACTTCCCTCGCTATAGC
1 CTCTACTTCCCTCGCTGCAGC
*
8991812 CTCTACTTCCCTCGCTGTAGC
1 CTCTACTTCCCTCGCTGCAGC
* * *
8991833 CTGTACTTCTCTCGCTGCCGC
1 CTCTACTTCCCTCGCTGCAGC
* *
8991854 CTCTACTTCTCTTGCTGC
1 CTCTACTTCCCTCGCTGC
8991872 CGCATTTGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 71 1.00
ACGTcount: A:0.08, C:0.43, G:0.15, T:0.34
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCAGC
Found at i:8992016 original size:66 final size:65
Alignment explanation
Indices: 8991879--8992023 Score: 175
Period size: 66 Copynumber: 2.2 Consensus size: 65
8991869 TGCCGCATTT
* * *
8991879 GCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTACTGTATC
1 GCTTTAAGTTG-TGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATACTGCATC
*
8991944 T
65 C
* * ** *
8991945 ACTTTAAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATGTTGCCT
1 GCTTTAAGTTGT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATACTGCAT
8992009 CC
64 CC
8992011 GCTTTAAGTTGTG
1 GCTTTAAGTTGTG
8992024 TAATTTGCTC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
65 2 0.03
66 61 0.91
67 4 0.06
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41
Consensus pattern (65 bp):
GCTTTAAGTTGTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATACTGCATCC
Found at i:8995038 original size:16 final size:16
Alignment explanation
Indices: 8995017--8995049 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8995007 TACTCAATTA
8995017 TATCTTCAAACTTATT
1 TATCTTCAAACTTATT
8995033 TATCTTCAAACTTATT
1 TATCTTCAAACTTATT
8995049 T
1 T
8995050 CTACAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (16 bp):
TATCTTCAAACTTATT
Found at i:8995984 original size:33 final size:32
Alignment explanation
Indices: 8995947--8996008 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
8995937 GAAAAATAAT
* *
8995947 AATTAAACTATACAACTAAAATATAACCAAAAA
1 AATTAAACTATACAA-AAAAAAATAACCAAAAA
8995980 AATTAAACTATACAAAAAAAAATAACCAA
1 AATTAAACTATACAAAAAAAAATAACCAA
8996009 CTTAAAGATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.66, C:0.15, G:0.00, T:0.19
Consensus pattern (32 bp):
AATTAAACTATACAAAAAAAAATAACCAAAAA
Found at i:8997464 original size:22 final size:22
Alignment explanation
Indices: 8997423--8997476 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
8997413 TTGTATTTTC
* *
8997423 ATTAAAATTTTTAGTAAATAATT
1 ATTAAAGTTTTAAGTAAAT-ATT
8997446 ATTAAAGTTTTAAGT-AATATT
1 ATTAAAGTTTTAAGTAAATATT
*
8997467 -TAAAAGTTTT
1 ATTAAAGTTTT
8997477 TGATAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.32
21 3 0.11
22 3 0.11
23 13 0.46
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
ATTAAAGTTTTAAGTAAATATT
Found at i:8997491 original size:21 final size:21
Alignment explanation
Indices: 8997425--8997492 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 21
8997415 GTATTTTCAT
*
8997425 TAAAA-TTTTTAGTAAATAATTA
1 TAAAAGTTTTAAGT-AA-AATTA
* *
8997447 TTAAAGTTTTAAGTAATATT-
1 TAAAAGTTTTAAGTAAAATTA
*
8997467 TAAAAGTTTT-TGATAAAATTA
1 TAAAAGTTTTAAG-TAAAATTA
8997488 TAAAA
1 TAAAA
8997493 TTTAGTTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.41
21 8 0.22
22 6 0.16
23 7 0.19
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (21 bp):
TAAAAGTTTTAAGTAAAATTA
Found at i:8997525 original size:11 final size:11
Alignment explanation
Indices: 8997498--8997543 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
8997488 TAAAATTTAG
8997498 TTTTTTTAT-T
1 TTTTTTTATAT
*
8997508 TCCTTTTTATAT
1 T-TTTTTTATAT
8997520 TTTTTTTATA-
1 TTTTTTTATAT
*
8997530 TTTTCTTATAT
1 TTTTTTTATAT
8997541 TTT
1 TTT
8997544 GGTCCTGTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 10 0.33
11 18 0.60
12 2 0.07
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTTTATAT
Found at i:8998320 original size:89 final size:89
Alignment explanation
Indices: 8998202--8998452 Score: 466
Period size: 89 Copynumber: 2.8 Consensus size: 89
8998192 CCAAACCCCT
* *
8998202 ACCCTTAAACCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
1 ACCCCTAACCCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
8998267 CCCTAACTCGACCCCGAATCACTA
66 CCCTAACTCGACCCCGAATCACTA
*
8998291 ACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
1 ACCCCTAACCCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
8998356 CCCTAACTCGACCCCGAATCACTA
66 CCCTAACTCGACCCCGAATCACTA
8998380 ACCCCTAACCCCTAAATATTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAATCCTAA
1 ACCCCTAACCCCTAAATATTATTTAATATATAAATT-AAAAAACACTAATTAATCTAAATCCTAA
8998445 ACCCTAAC
65 ACCCTAAC
8998453 CCTAAATCCC
Statistics
Matches: 157, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
89 121 0.77
90 36 0.23
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (89 bp):
ACCCCTAACCCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
CCCTAACTCGACCCCGAATCACTA
Found at i:8998457 original size:20 final size:21
Alignment explanation
Indices: 8998434--8998472 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8998424 ACTAATTAAT
8998434 CTAAAT-CCTAAACCCTAACC
1 CTAAATCCCTAAACCCTAACC
*
8998454 CTAAATCCCTAACCCCTAA
1 CTAAATCCCTAAACCCTAA
8998473 ACATTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (21 bp):
CTAAATCCCTAAACCCTAACC
Found at i:8998463 original size:14 final size:14
Alignment explanation
Indices: 8998440--8998474 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
8998430 TAATCTAAAT
8998440 CCTAAACCCTAA-C
1 CCTAAACCCTAACC
8998453 CCTAAATCCCTAACC
1 CCTAAA-CCCTAACC
8998468 CCTAAAC
1 CCTAAAC
8998475 ATTATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 7 0.35
15 7 0.35
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (14 bp):
CCTAAACCCTAACC
Found at i:8999108 original size:13 final size:13
Alignment explanation
Indices: 8999092--8999117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8999082 TTAAAAAACG
8999092 CCGCTAAAGACCT
1 CCGCTAAAGACCT
8999105 CCGCTAAAGACCT
1 CCGCTAAAGACCT
8999118 GAGAATTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (13 bp):
CCGCTAAAGACCT
Found at i:8999167 original size:41 final size:41
Alignment explanation
Indices: 8999105--8999239 Score: 184
Period size: 41 Copynumber: 3.3 Consensus size: 41
8999095 CTAAAGACCT
*
8999105 CCGCTAAAGACCTGAGA-ATTAGCGGTGCTTATTAAAAAACG
1 CCGCTAAAGACCTGA-ACATTAGCGGCGCTTATTAAAAAACG
* *
8999146 GCGCTAAAGACCTGAACATTAGCGGCGCTTATTCAAAAACG
1 CCGCTAAAGACCTGAACATTAGCGGCGCTTATTAAAAAACG
* * *
8999187 CCGCTAAAGACCTGAGCATTAGCGGCGCTT-TTCAGAAAATG
1 CCGCTAAAGACCTGAACATTAGCGGCGCTTATT-AAAAAACG
8999228 CCGCTAAAGACC
1 CCGCTAAAGACC
8999240 ACAAAAACTC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 3 0.04
41 81 0.96
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (41 bp):
CCGCTAAAGACCTGAACATTAGCGGCGCTTATTAAAAAACG
Found at i:8999400 original size:40 final size:40
Alignment explanation
Indices: 8999276--8999410 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
8999266 GGGCTTAGGC
*
8999276 TTTTT-GCGGCG-CTTTCCAAAAAACGCCGCTAATGCTT-A
1 TTTTTAGCGGCGTTTTTCC-AAAAACGCCGCTAATGCTTGA
* * *
8999314 TTTTTAGCGGCGTTTTT-TAAAAATCGCCGCTAATGATCGA
1 TTTTTAGCGGCGTTTTTCCAAAAA-CGCCGCTAATGCTTGA
** * *
8999354 CCTTTAGCGGCGTTTTTCCAAAAGCGCCGCTACTGCTTGA
1 TTTTTAGCGGCGTTTTTCCAAAAACGCCGCTAATGCTTGA
*
8999394 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
8999411 TGTCCAAACG
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
38 10 0.13
39 18 0.23
40 46 0.59
41 4 0.05
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTCCAAAAACGCCGCTAATGCTTGA
Found at i:9017233 original size:15 final size:14
Alignment explanation
Indices: 9017198--9017234 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
9017188 TAAGAGTATT
9017198 TATTTTATGGAAAA
1 TATTTTATGGAAAA
*
9017212 TAATTTATGGAAAA
1 TATTTTATGGAAAA
9017226 TACTTTTAT
1 TA-TTTTAT
9017235 ATTTTCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.46
Consensus pattern (14 bp):
TATTTTATGGAAAA
Found at i:9018072 original size:19 final size:19
Alignment explanation
Indices: 9018034--9018072 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9018024 TTTTTTATAT
*
9018034 AAAATATTAAAAATTCTTA
1 AAAATATAAAAAATTCTTA
9018053 AAAATATAAAATAATT-TTA
1 AAAATATAAAA-AATTCTTA
9018072 A
1 A
9018073 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATATAAAAAATTCTTA
Found at i:9022566 original size:21 final size:21
Alignment explanation
Indices: 9022533--9022572 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9022523 AAAAGAGATA
* * *
9022533 TTTGATTTGATGAGTGCAGTC
1 TTTGATGTAATGAATGCAGTC
9022554 TTTGATGTAATGAATGCAG
1 TTTGATGTAATGAATGCAG
9022573 CTAATAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.07, G:0.28, T:0.40
Consensus pattern (21 bp):
TTTGATGTAATGAATGCAGTC
Found at i:9026036 original size:25 final size:25
Alignment explanation
Indices: 9025979--9026048 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
9025969 TTGTAATTTT
* *
9025979 CCAAATGCATAGTTTGTTTTACATC
1 CCAAATGTATACTTTGTTTTACATC
*
9026004 TCAAATGTATACTTTGTTTTACATC
1 CCAAATGTATACTTTGTTTTACATC
* *
9026029 CCAAATGTACACTTTTTTTT
1 CCAAATGTATACTTTGTTTT
9026049 TCAATTTACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.19, G:0.09, T:0.46
Consensus pattern (25 bp):
CCAAATGTATACTTTGTTTTACATC
Found at i:9028768 original size:16 final size:16
Alignment explanation
Indices: 9028747--9028778 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9028737 TTAATTATTG
*
9028747 TCATATTATAATTTAA
1 TCATATTAAAATTTAA
9028763 TCATATTAAAATTTAA
1 TCATATTAAAATTTAA
9028779 AATTTAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TCATATTAAAATTTAA
Found at i:9032750 original size:24 final size:25
Alignment explanation
Indices: 9032718--9032774 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
9032708 GTAAATTGAA
* *
9032718 AAAAAAAAGTGTACATTTG-GATGT
1 AAAACAAAGTATACATTTGAGATGT
9032742 AAAACAAAGTATACATTTGAGATGT
1 AAAACAAAGTATACATTTGAGATGT
9032767 AAAACAAA
1 AAAACAAA
9032775 CTATGCAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 17 0.57
25 13 0.43
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.25
Consensus pattern (25 bp):
AAAACAAAGTATACATTTGAGATGT
Found at i:9032765 original size:25 final size:24
Alignment explanation
Indices: 9032718--9032788 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
9032708 GTAAATTGAA
* *
9032718 AAAAAAAAGTGTACATTTGGATGT
1 AAAACAAAGTATACATTTGGATGT
9032742 AAAACAAAGTATACATTTGAGATGT
1 AAAACAAAGTATACATTTG-GATGT
* *
9032767 AAAACAAACTATGCAATTTGGA
1 AAAACAAAGTATAC-ATTTGGA
9032789 AAAATTACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 17 0.41
25 19 0.46
26 5 0.12
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (24 bp):
AAAACAAAGTATACATTTGGATGT
Found at i:9036384 original size:21 final size:21
Alignment explanation
Indices: 9036360--9036399 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9036350 ATTTTATTAG
*
9036360 CTGCATTCATAAAATCAAAGA
1 CTGCACTCATAAAATCAAAGA
*
9036381 CTGCACTCATCAAATCAAA
1 CTGCACTCATAAAATCAAA
9036400 TATATCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.25, G:0.07, T:0.23
Consensus pattern (21 bp):
CTGCACTCATAAAATCAAAGA
Found at i:9041788 original size:14 final size:14
Alignment explanation
Indices: 9041765--9041798 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
9041755 ATATGAAAAT
*
9041765 ATAAAGTATTTTCC
1 ATAAATTATTTTCC
9041779 ATAAATTATTTTCC
1 ATAAATTATTTTCC
9041793 ATAAAT
1 ATAAAT
9041799 AAATACTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (14 bp):
ATAAATTATTTTCC
Found at i:9049104 original size:19 final size:20
Alignment explanation
Indices: 9049065--9049106 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
9049055 AATACTTGGT
9049065 AAAGGTATCGATACTTTTTGA
1 AAAGGTATCGATAC-TTTTGA
*
9049086 AAAGGTATTGATA-TTTTGA
1 AAAGGTATCGATACTTTTGA
9049105 AA
1 AA
9049107 CTACCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
21 12 0.60
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (20 bp):
AAAGGTATCGATACTTTTGA
Found at i:9055949 original size:15 final size:15
Alignment explanation
Indices: 9055928--9055970 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
9055918 CAATTTTTTG
9055928 AATTTTTTTATTTCT
1 AATTTTTTTATTTCT
*
9055943 CATTTTTTTATATTTCT
1 -AATTTTTT-TATTTCT
9055960 AATTTTTTTAT
1 AATTTTTTTAT
9055971 AATTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 14 0.58
17 7 0.29
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (15 bp):
AATTTTTTTATTTCT
Found at i:9055975 original size:18 final size:17
Alignment explanation
Indices: 9055930--9055971 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
9055920 ATTTTTTGAA
*
9055930 TTTTTT-TATTTCTCAT
1 TTTTTTATATTTCTAAT
9055946 TTTTTTATATTTCTAAT
1 TTTTTTATATTTCTAAT
9055963 TTTTTTATA
1 TTTTTTATA
9055972 ATTTTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTATATTTCTAAT
Found at i:9056115 original size:14 final size:15
Alignment explanation
Indices: 9056096--9056125 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
9056086 AAAATTAATA
9056096 AATTTTATTTT-TTG
1 AATTTTATTTTGTTG
9056110 AATTTTATTTTGTTG
1 AATTTTATTTTGTTG
9056125 A
1 A
9056126 TGGGGCGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (15 bp):
AATTTTATTTTGTTG
Found at i:9056729 original size:13 final size:13
Alignment explanation
Indices: 9056689--9056730 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
9056679 AATAACCGAC
*
9056689 ATATTTA-TTAAT
1 ATATTTATTTAAA
* *
9056701 ATATTTATATATA
1 ATATTTATTTAAA
9056714 ATATTTATTTAAA
1 ATATTTATTTAAA
9056727 ATAT
1 ATAT
9056731 ATGAGAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATTTATTTAAA
Found at i:9057945 original size:18 final size:17
Alignment explanation
Indices: 9057924--9057957 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9057914 TATATTAAAT
9057924 ATTTATTATTTATTCTTA
1 ATTTATT-TTTATTCTTA
*
9057942 ATTTATTTTTTTTCTT
1 ATTTATTTTTATTCTT
9057958 TGTTTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTTATTTTTATTCTTA
Found at i:9059278 original size:17 final size:17
Alignment explanation
Indices: 9059232--9059278 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
9059222 TAAATAAATT
*
9059232 ATTAATATAATTAAAAAT
1 ATTAAT-TAATTAAAAAA
*
9059250 ATAAAATT-ATTAAAAAA
1 AT-TAATTAATTAAAAAA
9059267 ATTAATTAATTA
1 ATTAATTAATTA
9059279 CTGATGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 4 0.17
17 14 0.58
18 3 0.12
19 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTAATTAATTAAAAAA
Found at i:9082495 original size:41 final size:41
Alignment explanation
Indices: 9082287--9082484 Score: 310
Period size: 41 Copynumber: 4.8 Consensus size: 41
9082277 TTTATCGTTA
* * * *
9082287 GTGACATAATTCAGACTTTACGTCTAGGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTA-GCAGGCTTAATGCCG
9082329 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
9082370 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
9082411 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
9082452 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
9082485 AAGAGCCGGT
Statistics
Matches: 148, Mismatches: 4, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
40 1 0.01
41 125 0.84
42 21 0.14
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:9082753 original size:33 final size:32
Alignment explanation
Indices: 9082698--9082760 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
9082688 GATAGATATG
9082698 TATATATATATGTTGCATTCGGCATAGGTGGA
1 TATATATATATGTTGCATTCGGCATAGGTGGA
* *
9082730 TATATTTATGTGTATGCATTCGGCATAGGTG
1 TATATATATATGT-TGCATTCGGCATAGGTG
9082761 AAAATAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (32 bp):
TATATATATATGTTGCATTCGGCATAGGTGGA
Found at i:9082777 original size:33 final size:33
Alignment explanation
Indices: 9082704--9082777 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
9082694 TATGTATATA
* * **
9082704 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
9082736 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
9082769 TGTATGTAT
1 TATATGTAT
9082778 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:9085057 original size:18 final size:18
Alignment explanation
Indices: 9085034--9085068 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9085024 ATTTAACTCT
*
9085034 AATTTCTCCTTTTATTTC
1 AATTTCTCATTTTATTTC
*
9085052 AATTTCTTATTTTATTT
1 AATTTCTCATTTTATTT
9085069 TATATATAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.14, G:0.00, T:0.66
Consensus pattern (18 bp):
AATTTCTCATTTTATTTC
Found at i:9087225 original size:20 final size:20
Alignment explanation
Indices: 9087196--9087235 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
9087186 AATGTCCAGC
*
9087196 AACAAAAAATCAAGAAAATA
1 AACAAAAAATCAAAAAAATA
* *
9087216 AACAAGAAATGAAAAAAATA
1 AACAAAAAATCAAAAAAATA
9087236 GGCGATAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.75, C:0.07, G:0.07, T:0.10
Consensus pattern (20 bp):
AACAAAAAATCAAAAAAATA
Found at i:9088337 original size:43 final size:43
Alignment explanation
Indices: 9088275--9088450 Score: 192
Period size: 43 Copynumber: 4.1 Consensus size: 43
9088265 AAACGCCATG
* * *
9088275 AAAGAACCTAATCTTTAGCGGCGCTTTCCCCTCAAACGCCGC-
1 AAAGACCCTGATCTTTAGCGGCGCTTTCCCCACAAACGCCGCT
* *
9088317 AATAGACCCTGATCTATAGCGGCGCTTTCCCCACAAATGCCGCT
1 AA-AGACCCTGATCTTTAGCGGCGCTTTCCCCACAAACGCCGCT
* * ** * *
9088361 AAAGACCTTGATCTTTAGTGGCGCTTTTTCCACAAACACTGCT
1 AAAGACCCTGATCTTTAGCGGCGCTTTCCCCACAAACGCCGCT
* ** * *
9088404 AAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACT
1 AAAGACCCTGATCTTTAGCGGCGCTTTCCCCACAAACGCCGCT
9088447 AAAG
1 AAAG
9088451 GCCAACACCT
Statistics
Matches: 110, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
42 2 0.02
43 106 0.96
44 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (43 bp):
AAAGACCCTGATCTTTAGCGGCGCTTTCCCCACAAACGCCGCT
Found at i:9088830 original size:21 final size:21
Alignment explanation
Indices: 9088804--9088881 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
9088794 GACGCTGCTC
9088804 TGCTTCCCTCGCTGTAGCCTT
1 TGCTTCCCTCGCTGTAGCCTT
*
9088825 TGCTTCCCTCGCTGTAGCCTG
1 TGCTTCCCTCGCTGTAGCCTT
* * **
9088846 TACTTCTCTCGCTGCCGCCTT
1 TGCTTCCCTCGCTGTAGCCTT
* *
9088867 TGCTTCTCTTGCTGT
1 TGCTTCCCTCGCTGT
9088882 CTCTTCTGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.04, C:0.37, G:0.19, T:0.40
Consensus pattern (21 bp):
TGCTTCCCTCGCTGTAGCCTT
Found at i:9088956 original size:66 final size:66
Alignment explanation
Indices: 9088868--9089028 Score: 166
Period size: 66 Copynumber: 2.4 Consensus size: 66
9088858 TGCCGCCTTT
* *
9088868 GCTTCTCTTGCTGTCT-CTTCTGCTTTAAGCTGCT-GCTGAAGTTCTTCATA-CTTTCGTTGAAC
1 GCTTCTCTCGCTG-CTGCATCTGCTTTAAGCTG-TAGCTGAAGTTCTTCATATCTTT-GTTGAAC
9088930 CTCA
63 CTCA
* * * * * *
9088934 GCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACTTT
1 GCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGAAGTTCTTCATATCTTTGTTGAACCTC
9088999 A
66 A
* * * *
9089000 GCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 GCTTCTCTCGCTGCTGCATCTGCTTTAAG
9089029 TTGTGTAATT
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
65 3 0.04
66 72 0.91
67 4 0.05
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.43
Consensus pattern (66 bp):
GCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGAAGTTCTTCATATCTTTGTTGAACCTC
A
Found at i:9092104 original size:9 final size:9
Alignment explanation
Indices: 9092090--9092235 Score: 54
Period size: 9 Copynumber: 15.7 Consensus size: 9
9092080 TAATGCAAGC
9092090 TATGTAATT
1 TATGTAATT
*
9092099 TATGT-ATAA
1 TATGTAAT-T
9092108 TAT-TAATT
1 TATGTAATT
* *
9092116 AAT-TAAGT
1 TATGTAATT
9092124 TATGTAATT
1 TATGTAATT
*
9092133 TATGT-ATAA
1 TATGTAAT-T
9092142 TAT-TAATT
1 TATGTAATT
*
9092150 AAT-TAATAT
1 TATGTAAT-T
9092159 TAATGTAATT
1 T-ATGTAATT
9092169 TATGTATAATAT
1 TATG--TAAT-T
*
9092181 TAATGTAAGT
1 T-ATGTAATT
9092191 TATGTAATT
1 TATGTAATT
*
9092200 CTGTGTTTTAATT
1 -TATG---TAATT
* *
9092213 AAT-TAAGT
1 TATGTAATT
9092221 TATGTAATT
1 TATGTAATT
9092230 TATGTA
1 TATGTA
9092236 TAATATTAAT
Statistics
Matches: 102, Mismatches: 18, Indels: 34
0.66 0.12 0.22
Matches are distributed among these distances:
8 26 0.25
9 45 0.44
10 9 0.09
11 11 0.11
12 3 0.03
13 8 0.08
ACGTcount: A:0.38, C:0.01, G:0.10, T:0.51
Consensus pattern (9 bp):
TATGTAATT
Found at i:9092131 original size:17 final size:16
Alignment explanation
Indices: 9092108--9092229 Score: 53
Period size: 17 Copynumber: 7.5 Consensus size: 16
9092098 TTATGTATAA
9092108 TATTAATTAATTAAGT
1 TATTAATTAATTAAGT
* *
9092124 TATGTAATTTATGTATA-A
1 TAT-TAATTAAT-TA-AGT
9092142 TATTAATTAATTAA--
1 TATTAATTAATTAAGT
*
9092156 TATTAATGTAATTTA-T
1 TATTAAT-TAATTAAGT
*
9092172 GTATAATATTAATGTAAGT
1 -TATTA-ATTAAT-TAAGT
*
9092191 TATGTAATT-CTGT--GT
1 TAT-TAATTAAT-TAAGT
9092206 T-TTAATTAATTAAGT
1 TATTAATTAATTAAGT
9092221 TATGTAATT
1 TAT-TAATT
9092230 TATGTATAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
13 6 0.07
14 9 0.11
15 13 0.16
16 6 0.07
17 30 0.37
18 15 0.18
19 3 0.04
ACGTcount: A:0.39, C:0.01, G:0.10, T:0.51
Consensus pattern (16 bp):
TATTAATTAATTAAGT
Found at i:9092158 original size:14 final size:14
Alignment explanation
Indices: 9092105--9092168 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 14
9092095 AATTTATGTA
9092105 TAATATTAATTAAT
1 TAATATTAATTAAT
*
9092119 TAAGTTATGTAATTTATGT
1 TAA--TAT-TAA-TTA-AT
9092138 ATAATATTAATTAAT
1 -TAATATTAATTAAT
9092153 TAATATTAATGTAAT
1 TAATATTAAT-TAAT
9092168 T
1 T
9092169 TATGTATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
14 13 0.32
15 6 0.15
16 6 0.15
17 6 0.15
18 6 0.15
19 1 0.02
20 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TAATATTAATTAAT
Found at i:9092181 original size:22 final size:22
Alignment explanation
Indices: 9092153--9092196 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
9092143 ATTAATTAAT
*
9092153 TAATATTAATGTAATTTATGTA
1 TAATATTAATGTAAGTTATGTA
9092175 TAATATTAATGTAAGTTATGTA
1 TAATATTAATGTAAGTTATGTA
9092197 ATTCTGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
TAATATTAATGTAAGTTATGTA
Found at i:9092269 original size:46 final size:46
Alignment explanation
Indices: 9092216--9092306 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
9092206 TTTAATTAAT
* *
9092216 TAAGTTATGTAATTTATGTATAATATTAATGT-AGTTATGTAAGTTG
1 TAAGTTATGTAAGTTATATATAATATTAAT-TAAGTTATGTAAGTTG
*
9092262 TAAGTTATGTAAGTTATATATATTATTAATTAAGTTATGTAAGTT
1 TAAGTTATGTAAGTTATATATAATATTAATTAAGTTATGTAAGTT
9092307 AACTATTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 1 0.02
46 40 0.98
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (46 bp):
TAAGTTATGTAAGTTATATATAATATTAATTAAGTTATGTAAGTTG
Found at i:9092272 original size:9 final size:9
Alignment explanation
Indices: 9092216--9092278 Score: 51
Period size: 9 Copynumber: 6.9 Consensus size: 9
9092206 TTTAATTAAT
9092216 TAAGTTATG
1 TAAGTTATG
*
9092225 TAATTTATG
1 TAAGTTATG
*
9092234 TATAATATTAATG
1 --TAA-GTT-ATG
9092247 T-AGTTATG
1 TAAGTTATG
9092255 TAAG-T-TG
1 TAAGTTATG
9092262 TAAGTTATG
1 TAAGTTATG
9092271 TAAGTTAT
1 TAAGTTAT
9092279 ATATATTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
7 6 0.14
8 6 0.14
9 22 0.50
10 1 0.02
11 4 0.09
12 2 0.05
13 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:9092391 original size:16 final size:16
Alignment explanation
Indices: 9092370--9092402 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9092360 AACTCAATTA
9092370 TATCTTCAAACTTATT
1 TATCTTCAAACTTATT
9092386 TATCTTCAAACTTATT
1 TATCTTCAAACTTATT
9092402 T
1 T
9092403 CTACAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (16 bp):
TATCTTCAAACTTATT
Found at i:9092455 original size:16 final size:16
Alignment explanation
Indices: 9092431--9092464 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
9092421 GGTATTTTCA
*
9092431 TTATTTTCAAACTTAT
1 TTATCTTCAAACTTAT
9092447 TTATCTTCAAACTTAT
1 TTATCTTCAAACTTAT
9092463 TT
1 TT
9092465 CTACATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.15, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATCTTCAAACTTAT
Found at i:9093298 original size:32 final size:32
Alignment explanation
Indices: 9093262--9093323 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
9093252 GAAAAATAAT
**
9093262 AATTAAACTATACAACTAAAATATAACCAAAA
1 AATTAAACTATACAAAAAAAATATAACCAAAA
9093294 AATTAAACTATACAAAAAAAATATAACCAA
1 AATTAAACTATACAAAAAAAATATAACCAA
9093324 CTTAAAGATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.21
Consensus pattern (32 bp):
AATTAAACTATACAAAAAAAATATAACCAAAA
Found at i:9093743 original size:24 final size:23
Alignment explanation
Indices: 9093707--9093751 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
9093697 ACCGATAAAT
9093707 GACAGAAGTGAATTA-TCAAACA
1 GACAGAAGTGAATTATTCAAACA
9093729 GACAGGAAGTTGAATTATTCAAA
1 GACA-GAAG-TGAATTATTCAAA
9093752 AAACCGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.20
23 4 0.20
24 7 0.35
25 5 0.25
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.22
Consensus pattern (23 bp):
GACAGAAGTGAATTATTCAAACA
Found at i:9093778 original size:57 final size:59
Alignment explanation
Indices: 9093674--9093783 Score: 181
Period size: 57 Copynumber: 1.9 Consensus size: 59
9093664 GTAATGAAAT
9093674 GGAAGTTGAAATTATTCAAACAAACCGATAAATGACAGAAGTGAATTATCAAACAGACA
1 GGAAGTTGAAATTATTCAAACAAACCGATAAATGACAGAAGTGAATTATCAAACAGACA
*
9093733 GGAAGTTG-AATTATTCAAA-AAACCGATAAAT-ACTGAAGTGAAATTATCAAA
1 GGAAGTTGAAATTATTCAAACAAACCGATAAATGACAGAAGTG-AATTATCAAA
9093784 AACAGATAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
56 8 0.16
57 22 0.45
58 11 0.22
59 8 0.16
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (59 bp):
GGAAGTTGAAATTATTCAAACAAACCGATAAATGACAGAAGTGAATTATCAAACAGACA
Found at i:9094884 original size:22 final size:22
Alignment explanation
Indices: 9094843--9094896 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
9094833 TTGTATTTTC
* *
9094843 ATTAAAATTTTTAGTAAATAATT
1 ATTAAAGTTTTAAGTAAAT-ATT
9094866 ATTAAAGTTTTAAGT-AATATT
1 ATTAAAGTTTTAAGTAAATATT
*
9094887 -TAAAAGTTTT
1 ATTAAAGTTTT
9094897 TGATAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.32
21 3 0.11
22 3 0.11
23 13 0.46
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
ATTAAAGTTTTAAGTAAATATT
Found at i:9094911 original size:21 final size:21
Alignment explanation
Indices: 9094845--9094912 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 21
9094835 GTATTTTCAT
*
9094845 TAAAA-TTTTTAGTAAATAATTA
1 TAAAAGTTTTAAGT-AA-AATTA
* *
9094867 TTAAAGTTTTAAGTAATATT-
1 TAAAAGTTTTAAGTAAAATTA
*
9094887 TAAAAGTTTT-TGATAAAATTA
1 TAAAAGTTTTAAG-TAAAATTA
9094908 TAAAA
1 TAAAA
9094913 TTTAGTTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.41
21 8 0.22
22 6 0.16
23 7 0.19
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (21 bp):
TAAAAGTTTTAAGTAAAATTA
Found at i:9094943 original size:10 final size:10
Alignment explanation
Indices: 9094930--9094961 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
9094920 TTTTATTTCC
9094930 TTTTTATATT
1 TTTTTATATT
9094940 TTTTTATATT
1 TTTTTATATT
*
9094950 TTCTTATATT
1 TTTTTATATT
9094960 TT
1 TT
9094962 GGTCCTGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTATATT
Found at i:9095815 original size:88 final size:88
Alignment explanation
Indices: 9095614--9095854 Score: 441
Period size: 89 Copynumber: 2.7 Consensus size: 88
9095604 CCTACCCTTA
9095614 AACCCTAAATATTATTTAATATAT-AATT-AAAAACACTAATTAATCTAAATCCTAAACCCTAAC
1 AACCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAACCCTAAC
9095677 TCGACCCCGAATCACTAACCCCT
66 TCGACCCCGAATCACTAACCCCT
*
9095700 AACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAACCCTAA
1 AA-CCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAACCCTAA
9095765 CTCGACCCCGAATCACTAACCCCT
65 CTCGACCCCGAATCACTAACCCCT
9095789 AACCCTAAATATTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAATCCTAAACCCTAA
1 AACCCTAAATATTATTTAATATATAAATT-AAAAAACACTAATTAATCTAAATCCTAAACCCTAA
9095854 C
65 C
9095855 CCTAAATCCC
Statistics
Matches: 149, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
86 2 0.01
87 21 0.14
88 30 0.20
89 96 0.64
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.28
Consensus pattern (88 bp):
AACCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAACCCTAAC
TCGACCCCGAATCACTAACCCCT
Found at i:9095859 original size:20 final size:21
Alignment explanation
Indices: 9095836--9095874 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9095826 ACTAATTAAT
9095836 CTAAAT-CCTAAACCCTAACC
1 CTAAATCCCTAAACCCTAACC
*
9095856 CTAAATCCCTAACCCCTAA
1 CTAAATCCCTAAACCCTAA
9095875 ACATTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (21 bp):
CTAAATCCCTAAACCCTAACC
Found at i:9095865 original size:14 final size:14
Alignment explanation
Indices: 9095842--9095876 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
9095832 TAATCTAAAT
9095842 CCTAAACCCTAA-C
1 CCTAAACCCTAACC
9095855 CCTAAATCCCTAACC
1 CCTAAA-CCCTAACC
9095870 CCTAAAC
1 CCTAAAC
9095877 ATTATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 7 0.35
15 7 0.35
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (14 bp):
CCTAAACCCTAACC
Found at i:9095928 original size:80 final size:77
Alignment explanation
Indices: 9095696--9095935 Score: 239
Period size: 89 Copynumber: 2.9 Consensus size: 77
9095686 AATCACTAAC
*
9095696 CCCTAACCCCTAAACATTATTTAATATATAAATT-AAAAAACACTAATTAATCTAAATCCTAAAC
1 CCCTAA-CCCTAAACATTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAAC
*
9095760 CCTAACTCGACCCCGAATCACTAAC
65 CCT-A----A-CCC---T-A--AAT
* *
9095785 CCCTAACCCTAAATATTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAATCCTAAACC
1 CCCTAACCCTAAACATTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACC
9095850 CTAACCCTAAAT
66 CTAACCCTAAAT
* * * * *
9095862 CCCTAACCCCTAAACATTATTTAATATTATATAATTTAAAATATATTAATTAGTCTAAACCCTAA
1 CCCTAA-CCCTAAACATTATTTAATA-TATA-AATTAAAAAAACACTAATTAATCTAAACCCTAA
*
9095927 ACTCTAACC
63 ACCCTAACC
9095936 TAACACCGAA
Statistics
Matches: 137, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
77 8 0.06
78 18 0.13
79 5 0.04
80 36 0.26
83 3 0.02
84 1 0.01
88 27 0.20
89 39 0.28
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (77 bp):
CCCTAACCCTAAACATTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACC
CTAACCCTAAAT
Found at i:9096511 original size:13 final size:13
Alignment explanation
Indices: 9096495--9096520 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9096485 TTAAAAAACG
9096495 CCGCTAAAGACCT
1 CCGCTAAAGACCT
9096508 CCGCTAAAGACCT
1 CCGCTAAAGACCT
9096521 GAGAATTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (13 bp):
CCGCTAAAGACCT
Found at i:9096570 original size:41 final size:41
Alignment explanation
Indices: 9096508--9096642 Score: 184
Period size: 41 Copynumber: 3.3 Consensus size: 41
9096498 CTAAAGACCT
*
9096508 CCGCTAAAGACCTGAGA-ATTAGCGGTGCTTATTAAAAAACG
1 CCGCTAAAGACCTGA-ACATTAGCGGCGCTTATTAAAAAACG
* *
9096549 GCGCTAAAGACCTGAACATTAGCGGCGCTTATTCAAAAACG
1 CCGCTAAAGACCTGAACATTAGCGGCGCTTATTAAAAAACG
* * *
9096590 CCGCTAAAGACCTGAGCATTAGCGGCGCTT-TTCAGAAAATG
1 CCGCTAAAGACCTGAACATTAGCGGCGCTTATT-AAAAAACG
9096631 CCGCTAAAGACC
1 CCGCTAAAGACC
9096643 ACAAAAACTC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 3 0.04
41 81 0.96
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (41 bp):
CCGCTAAAGACCTGAACATTAGCGGCGCTTATTAAAAAACG
Found at i:9096803 original size:40 final size:40
Alignment explanation
Indices: 9096679--9096813 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
9096669 GGGCTTAGGC
*
9096679 TTTTT-GCGGCG-CTTTCCAAAAAACGCCGCTAATGCTT-A
1 TTTTTAGCGGCGTTTTTCC-AAAAACGCCGCTAATGCTTGA
* * *
9096717 TTTTTAGCGGCGTTTTT-TAAAAATCGCCGCTAATGATCGA
1 TTTTTAGCGGCGTTTTTCCAAAAA-CGCCGCTAATGCTTGA
** * *
9096757 CCTTTAGCGGCGTTTTTCCAAAAGCGCCGCTACTGCTTGA
1 TTTTTAGCGGCGTTTTTCCAAAAACGCCGCTAATGCTTGA
*
9096797 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
9096814 TGTCCAAACG
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
38 10 0.13
39 18 0.23
40 46 0.59
41 4 0.05
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTCCAAAAACGCCGCTAATGCTTGA
Found at i:9103601 original size:40 final size:38
Alignment explanation
Indices: 9103546--9103625 Score: 133
Period size: 40 Copynumber: 2.1 Consensus size: 38
9103536 TTACTCTTTG
9103546 ATCTAACGTATAAAGACTAATTTATTAATTTTTTGAGTAA
1 ATCTAACGTATAAAGACTAATTTATTAA--TTTTGAGTAA
*
9103586 ATCTAACGTTTAAAGACTAATTTATTAATTTTGAGTAA
1 ATCTAACGTATAAAGACTAATTTATTAATTTTGAGTAA
9103624 AT
1 AT
9103626 AGAATAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 12 0.31
40 27 0.69
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (38 bp):
ATCTAACGTATAAAGACTAATTTATTAATTTTGAGTAA
Found at i:9109717 original size:8 final size:8
Alignment explanation
Indices: 9109669--9109701 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
9109659 TAAATGATAC
9109669 AAATTAAAA
1 AAATT-AAA
9109678 AAATTAAA
1 AAATTAAA
9109686 AAATTAAA
1 AAATTAAA
9109694 AAATTAAA
1 AAATTAAA
9109702 TAAAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 19 0.79
9 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:9111520 original size:68 final size:68
Alignment explanation
Indices: 9111436--9111610 Score: 219
Period size: 68 Copynumber: 2.6 Consensus size: 68
9111426 GAGGTTTAAT
* * * *
9111436 GTGTAAGACTAAAGCTC-AGCTATGAAAACCAATAGAGTCCGCCAAGACATTAAATATGGGGTTA
1 GTGTAAGACCATAGCTCGA-CTATGACAACCAATAGAGTCCGCCAAGACATTAAACATGGGGTTA
*
9111500 CGAG
65 CAAG
* *
9111504 GTGTAAGACCATAGCTCGACTAT-AGCAACCAATAGAGTCCGCCAGGACATTAAACATGGGGTTG
1 GTGTAAGACCATAGCTCGACTATGA-CAACCAATAGAGTCCGCCAAGACATTAAACATGGGGTTA
9111568 CAAG
65 CAAG
* * * *
9111572 ATGTAAGACCATATCTCGACTATGGCAACCAATACAGTC
1 GTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTC
9111611 TACTAGGATG
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
67 1 0.01
68 91 0.98
69 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (68 bp):
GTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCGCCAAGACATTAAACATGGGGTTAC
AAG
Found at i:9111645 original size:68 final size:68
Alignment explanation
Indices: 9111462--9111654 Score: 203
Period size: 68 Copynumber: 2.8 Consensus size: 68
9111452 CAGCTATGAA
* * * * * *
9111462 AACCAATAGAGTCCGCCAAGACATTAAATATGGGGTTACGAGGTGTAAGACCATAGCTCGACTAT
1 AACCAATACAGTCCACCAGGACATTAAACATGGGGTTGCAAGGTGTAAGACCATAGCTCGACTAT
9111527 AGC
66 AGC
* * * *
9111530 AACCAATAGAGTCCGCCAGGACATTAAACATGGGGTTGCAAGATGTAAGACCATATCTCGACTAT
1 AACCAATACAGTCCACCAGGACATTAAACATGGGGTTGCAAGGTGTAAGACCATAGCTCGACTAT
*
9111595 GGC
66 AGC
* * * *
9111598 AACCAATACAGTCTACTAGGATGA-TAAACAT-GGGTT-CAGGTTGTGTAAGACCATAGC
1 AACCAATACAGTCCACCAGGA-CATTAAACATGGGGTTGCAAG--GTGTAAGACCATAGC
9111655 GTCAGGTGAA
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
66 3 0.03
67 5 0.05
68 98 0.92
69 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (68 bp):
AACCAATACAGTCCACCAGGACATTAAACATGGGGTTGCAAGGTGTAAGACCATAGCTCGACTAT
AGC
Found at i:9112853 original size:10 final size:10
Alignment explanation
Indices: 9112838--9112869 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
9112828 CATTCAAAAA
9112838 ATATTTATAT
1 ATATTTATAT
9112848 ATATTTATAT
1 ATATTTATAT
*
9112858 ATATATATAT
1 ATATTTATAT
9112868 AT
1 AT
9112870 TCAAAAGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATATTTATAT
Found at i:9113438 original size:42 final size:43
Alignment explanation
Indices: 9113391--9113488 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
9113381 CCCGGTATCG
* *
9113391 CACACTTAGTGCCC-GTTATTCAACATC-TCCATTTTAATTTCA
1 CACACTTAGTGCCCTGTTATTCAACACCAT-CATTTTAATTCCA
* * * *
9113433 CACACTTAGTGCCCTTTTATTCAACCCCATCATTTTAGTTCCG
1 CACACTTAGTGCCCTGTTATTCAACACCATCATTTTAATTCCA
9113476 CACACTTAGTGCC
1 CACACTTAGTGCC
9113489 GTTTACATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 14 0.29
43 33 0.69
44 1 0.02
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (43 bp):
CACACTTAGTGCCCTGTTATTCAACACCATCATTTTAATTCCA
Found at i:9117524 original size:14 final size:14
Alignment explanation
Indices: 9117505--9117533 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9117495 GAGCCTGACA
9117505 AACTCAAGCTCCAT
1 AACTCAAGCTCCAT
9117519 AACTCAAGCTCCAT
1 AACTCAAGCTCCAT
9117533 A
1 A
9117534 TTGATCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.34, G:0.07, T:0.21
Consensus pattern (14 bp):
AACTCAAGCTCCAT
Found at i:9119277 original size:6 final size:6
Alignment explanation
Indices: 9119266--9119294 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
9119256 GCTCGTTTTT
9119266 AATTAA AATTAA AATTAA AATTAA AATTA
1 AATTAA AATTAA AATTAA AATTAA AATTA
9119295 GTTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATTAA
Found at i:9119348 original size:16 final size:16
Alignment explanation
Indices: 9119311--9119350 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
9119301 TTAATAAAAT
* *
9119311 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
9119327 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
9119343 TAAAATTA
1 TAAAATTA
9119351 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:9119429 original size:59 final size:59
Alignment explanation
Indices: 9119361--9119530 Score: 313
Period size: 59 Copynumber: 2.9 Consensus size: 59
9119351 TCAAATTATT
* *
9119361 AATTGTTAATTATATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
9119420 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
9119479 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAA
9119531 ACAAACTTGA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 108 1.00
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:9120817 original size:25 final size:25
Alignment explanation
Indices: 9120782--9120833 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
9120772 CTTCAAAGGC
*
9120782 TAGATACATATAAAAAGCTTATAAA
1 TAGATAAATATAAAAAGCTTATAAA
* * *
9120807 TAGATAAATATACAAGGTTTATAAA
1 TAGATAAATATAAAAAGCTTATAAA
9120832 TA
1 TA
9120834 ATCTAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.31
Consensus pattern (25 bp):
TAGATAAATATAAAAAGCTTATAAA
Found at i:9129343 original size:21 final size:20
Alignment explanation
Indices: 9129319--9129364 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9129309 GGTTAATGGT
9129319 GATTAAGGTAAAATAATTAAA
1 GATTAA-GTAAAATAATTAAA
* *
9129340 GATTAAGTTAATTAATTAAA
1 GATTAAGTAAAATAATTAAA
9129360 G-TTAA
1 GATTAA
9129365 TTAAGTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (20 bp):
GATTAAGTAAAATAATTAAA
Found at i:9129363 original size:14 final size:15
Alignment explanation
Indices: 9129344--9129374 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
9129334 ATTAAAGATT
9129344 AAGTTAATTAA-TTA
1 AAGTTAATTAAGTTA
9129358 AAGTTAATTAAGTTA
1 AAGTTAATTAAGTTA
9129373 AA
1 AA
9129375 CCATGGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (15 bp):
AAGTTAATTAAGTTA
Found at i:9136768 original size:9 final size:9
Alignment explanation
Indices: 9136754--9136797 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
9136744 TTAATCTCAA
9136754 TTTATTTAT
1 TTTATTTAT
9136763 TTTATTTAT
1 TTTATTTAT
* *
9136772 TTGATTAAAT
1 TTTATT-TAT
9136782 TTTATTTAT
1 TTTATTTAT
9136791 ATTTATT
1 -TTTATT
9136798 AAGAATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 16 0.55
10 13 0.45
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (9 bp):
TTTATTTAT
Found at i:9137588 original size:9 final size:9
Alignment explanation
Indices: 9137576--9137634 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
9137566 AAAATTAACT
9137576 GAATTACCC
1 GAATTACCC
*
9137585 GAATTAACC
1 GAATTACCC
*
9137594 GAATTAACC
1 GAATTACCC
9137603 GAATTACCC
1 GAATTACCC
*
9137612 AAATTACCC
1 GAATTACCC
9137621 GAATTACCC
1 GAATTACCC
9137630 GAATT
1 GAATT
9137635 GAATTACTAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (9 bp):
GAATTACCC
Found at i:9137591 original size:18 final size:18
Alignment explanation
Indices: 9137568--9137634 Score: 89
Period size: 18 Copynumber: 3.7 Consensus size: 18
9137558 TTTGGTTAAA
*
9137568 AATTAACTGAATTACCCG
1 AATTAACCGAATTACCCG
*
9137586 AATTAACCGAATTAACCG
1 AATTAACCGAATTACCCG
* *
9137604 AATTACCCAAATTACCCG
1 AATTAACCGAATTACCCG
*
9137622 AATTACCCGAATT
1 AATTAACCGAATT
9137635 GAATTACTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.40, C:0.25, G:0.09, T:0.25
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:9137599 original size:27 final size:27
Alignment explanation
Indices: 9137568--9137634 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
9137558 TTTGGTTAAA
* *
9137568 AATTAACTGAATTACCCGAATTAACCG
1 AATTAACCGAATTACCCAAATTAACCG
*
9137595 AATTAACCGAATTACCCAAATTACCCG
1 AATTAACCGAATTACCCAAATTAACCG
*
9137622 AATTACCCGAATT
1 AATTAACCGAATT
9137635 GAATTACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.40, C:0.25, G:0.09, T:0.25
Consensus pattern (27 bp):
AATTAACCGAATTACCCAAATTAACCG
Found at i:9137664 original size:17 final size:17
Alignment explanation
Indices: 9137642--9137704 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
9137632 ATTGAATTAC
9137642 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
** ** *
9137659 TACATAAGTCTTTGAACCAC
1 TACATAA---TTAAAAATAT
9137679 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
9137696 TACATAATT
1 TACATAATT
9137705 CTTGAAATTA
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
17 21 0.64
20 12 0.36
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:9138917 original size:21 final size:21
Alignment explanation
Indices: 9138885--9138931 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
9138875 ACTATTTGAA
9138885 ATATACTAAGTACTGATACCT
1 ATATACTAAGTACTGATACCT
*
9138906 ATAT-CTAGAGTATTGATACCT
1 ATATACTA-AGTACTGATACCT
9138927 A-ATAC
1 ATATAC
9138932 CAAATATGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (21 bp):
ATATACTAAGTACTGATACCT
Found at i:9158041 original size:15 final size:16
Alignment explanation
Indices: 9158017--9158056 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
9158007 ATTAAAAGTT
9158017 TTTATTAAATCTTTAA
1 TTTATTAAATCTTTAA
*
9158033 TTT-TTAAATTTTTAA
1 TTTATTAAATCTTTAA
9158048 TTTATTAAA
1 TTTATTAAA
9158057 AATATTGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATTAAATCTTTAA
Found at i:9159295 original size:14 final size:14
Alignment explanation
Indices: 9159276--9159315 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
9159266 TTGATTGCCA
9159276 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
9159290 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
9159304 GAAAAATGTTTT
1 GTAAAATGTTTT
9159316 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:9159328 original size:34 final size:35
Alignment explanation
Indices: 9159284--9159350 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
9159274 CAGTAAAATG
* *
9159284 TTTTCCGTAAAATGATTT-CTGAAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTACTGAAAAATATTTTAC
* *
9159318 TTTTCTGTAAAATAATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATAATTTACTGAAAAATATTTT
9159351 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.34, C:0.09, G:0.10, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTGAAAAATATTTTAC
Found at i:9159336 original size:20 final size:20
Alignment explanation
Indices: 9159299--9159338 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
9159289 CGTAAAATGA
**
9159299 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATAATTTACT
*
9159319 TTTCTGTAAAATAATTTACT
1 TTTCTGAAAAATAATTTACT
9159339 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATAATTTACT
Found at i:9159453 original size:20 final size:20
Alignment explanation
Indices: 9159421--9159479 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 20
9159411 ATTTTCCGAA
9159421 AAAATTATTTTTACATATATT
1 AAAA-TATTTTTACATATATT
*
9159442 AATAAT-TTTTT--ATATTTT
1 AA-AATATTTTTACATATATT
*
9159460 AAATTATTTTTACATATATT
1 AAAATATTTTTACATATATT
9159480 GCAATGATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
17 2 0.06
18 13 0.42
20 11 0.35
21 3 0.10
22 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (20 bp):
AAAATATTTTTACATATATT
Found at i:9160038 original size:12 final size:12
Alignment explanation
Indices: 9160021--9160046 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9160011 CAAAACAGGC
9160021 TTTTAGCGGCGT
1 TTTTAGCGGCGT
9160033 TTTTAGCGGCGT
1 TTTTAGCGGCGT
9160045 TT
1 TT
9160047 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:9160313 original size:114 final size:112
Alignment explanation
Indices: 9160114--9160481 Score: 529
Period size: 114 Copynumber: 3.2 Consensus size: 112
9160104 GAAATAAGAA
* ** * *
9160114 TTAGCGGTGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTACTGAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGTTTT
* * * ** *
9160179 CAGGGATTTTGTGGCATTTTTAAGAAAGCGCCGCTAATTTTCAAGGCT
66 C-GGGGTTTAGTGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
9160227 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACCGTTTTCTGAGTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGTTT
* *
9160292 TCGTGGGTTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCT
65 TCG-GGGTTTAGTGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
9160341 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG-TTT
* *
9160406 TCGGGTGTTTAGTGGCGTTTTTAAGAAAGCGTCTCTAATGCTCAGGGCT
65 TCGGG-GTTTAGTGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
9160455 TTAGCAGCGTTTTTGAGAAAGCGCCGC
1 TTAGCGGCGTTTTTGAGAAAGCGCCGC
9160482 TAATGCTCAT
Statistics
Matches: 230, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
113 59 0.26
114 171 0.74
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (112 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGTTTT
CGGGGTTTAGTGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:9160474 original size:41 final size:41
Alignment explanation
Indices: 9160420--9160522 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
9160410 GTGTTTAGTG
* * *
9160420 GCGTTTTTAAGAAAGCGTCTCTAATGCTCAGGGCTTTAGCA
1 GCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCA
* *
9160461 GCGTTTTTGAGAAAGCGCCGCTAATGCTCATGGCTTTAGCG
1 GCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCA
* * *
9160502 GCGGTTTTGGGGAAGCGCCGC
1 GCGTTTTTGAGAAAGCGCCGC
9160523 AAAAAAACCT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.28
Consensus pattern (41 bp):
GCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCA
Found at i:9160590 original size:155 final size:155
Alignment explanation
Indices: 9160299--9160582 Score: 423
Period size: 155 Copynumber: 1.8 Consensus size: 155
9160289 TTTTCGTGGG
* * *
9160299 TTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCG
1 TTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGGTTTTGAGAAAGCG
* *
9160364 CCGCAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTTCGGGTGTTTAGTGGCGTTTTTA
66 CCGCAAAAAACCTAAGCCCAACGACGCCGTTTCTTGAGCTTTTCGGGTGATTAGTGGCGTTTTTA
9160429 AGAAAGCGTCTCTAATGCTCAGGGC
131 AGAAAGCGTCTCTAATGCTCAGGGC
* * * *
9160454 TTTAGCAGCGTTTTTGAGAAAGCGCCGCTAATGCTCATGGCTTTAGCGGCGGTTTTGGGGAAGCG
1 TTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGGTTTTGAGAAAGCG
9160519 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTCCTT-AGC-TTTCGGG-GAATTAGCT-GCGTT
66 CCGC-AAAAAACCTAAGCCCAACGACGCCGTTT-CTTGAGCTTTTCGGGTG-ATTAG-TGGCGTT
9160580 TTT
127 TTT
9160583 GGGAAAGCAC
Statistics
Matches: 116, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
154 1 0.01
155 81 0.70
156 32 0.28
157 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (155 bp):
TTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGGTTTTGAGAAAGCG
CCGCAAAAAACCTAAGCCCAACGACGCCGTTTCTTGAGCTTTTCGGGTGATTAGTGGCGTTTTTA
AGAAAGCGTCTCTAATGCTCAGGGC
Found at i:9160620 original size:72 final size:73
Alignment explanation
Indices: 9160496--9160654 Score: 198
Period size: 72 Copynumber: 2.2 Consensus size: 73
9160486 GCTCATGGCT
* * *
9160496 TTAGCGGCGGTTTTGGGGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTCCT-TAGCT
1 TTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTCCTAT-GCT
9160560 TTCGGGGAA
65 TTCGGGGAA
* * * *
9160569 TTAGCTGCGTTTTTGGGAAAGCACCGCGAGAAAAA-CTAAG-CCAACGGCGCCGTTTTCTATGCT
1 TTAGCGGCGTTTTTGGGAAAGCACCGC-AAAAAAACCTAAGCCCAACGACGCCGTTTCCTATGCT
*
9160632 TTCGGGGAT
65 TTCGGGGAA
*
9160641 TTGGCGGCGTTTTT
1 TTAGCGGCGTTTTT
9160655 ATGAAAGCGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
72 39 0.53
73 29 0.39
74 6 0.08
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (73 bp):
TTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTCCTATGCTT
TCGGGGAA
Found at i:9160850 original size:24 final size:24
Alignment explanation
Indices: 9160819--9160868 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9160809 CGTAAAAGAG
9160819 ATAGTATTAATTTTAAAATATTGA
1 ATAGTATTAATTTTAAAATATTGA
9160843 ATAGTATTAATTTTAAAATATTGA
1 ATAGTATTAATTTTAAAATATTGA
9160867 AT
1 AT
9160869 TAATTATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (24 bp):
ATAGTATTAATTTTAAAATATTGA
Found at i:9160997 original size:15 final size:15
Alignment explanation
Indices: 9160977--9161014 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
9160967 TATTGTTAGT
9160977 GGGATTTAGGGGTTA
1 GGGATTTAGGGGTTA
9160992 GGGATTTAGGGGTTA
1 GGGATTTAGGGGTTA
*
9161007 GGGTTTTA
1 GGGATTTA
9161015 ATGGTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (15 bp):
GGGATTTAGGGGTTA
Found at i:9161020 original size:15 final size:15
Alignment explanation
Indices: 9160977--9161023 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
9160967 TATTGTTAGT
*
9160977 GGGATTTAGGGGTTA
1 GGGATTTAAGGGTTA
*
9160992 GGGATTTAGGGGTTA
1 GGGATTTAAGGGTTA
* *
9161007 GGGTTTTAATGGTTA
1 GGGATTTAAGGGTTA
9161022 GG
1 GG
9161024 TTAGAGTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.36
Consensus pattern (15 bp):
GGGATTTAAGGGTTA
Found at i:9161324 original size:20 final size:19
Alignment explanation
Indices: 9161285--9161385 Score: 86
Period size: 20 Copynumber: 5.3 Consensus size: 19
9161275 TGTGATTTAG
*
9161285 GGGTTATGCTTTAGGGGGTTT
1 GGGTTATG-TTTA-GGGGTTA
9161306 GGGTTATGTTTCAGGGGTTA
1 GGGTTATGTTT-AGGGGTTA
**
9161326 GGGGGA--TTTAGGGGTTA
1 GGGTTATGTTTAGGGGTTA
9161343 GGGTTATGTTTAAGGGGTTA
1 GGGTTATGTTT-AGGGGTTA
9161363 GGG--A-GATTTAGGGGTTA
1 GGGTTATG-TTTAGGGGTTA
9161380 TGGGTT
1 -GGGTT
9161386 TAGGGTTAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
17 21 0.31
18 10 0.15
19 3 0.04
20 24 0.36
21 9 0.13
ACGTcount: A:0.16, C:0.02, G:0.45, T:0.38
Consensus pattern (19 bp):
GGGTTATGTTTAGGGGTTA
Found at i:9161340 original size:37 final size:37
Alignment explanation
Indices: 9161294--9161385 Score: 139
Period size: 37 Copynumber: 2.4 Consensus size: 37
9161284 GGGGTTATGC
* *
9161294 TTTAGGGGGTTTGGGTTATGTTTCAGGGGTTAGGGGGA
1 TTTA-GGGGTTTGGGTTATGTTTAAGGGGTTAGGGAGA
*
9161332 TTTAGGGGTTAGGGTTATGTTTAAGGGGTTAGGGAGA
1 TTTAGGGGTTTGGGTTATGTTTAAGGGGTTAGGGAGA
9161369 TTTAGGGGTTATGGGTT
1 TTTAGGGGTT-TGGGTT
9161386 TAGGGTTAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 40 0.82
38 9 0.18
ACGTcount: A:0.16, C:0.01, G:0.45, T:0.38
Consensus pattern (37 bp):
TTTAGGGGTTTGGGTTATGTTTAAGGGGTTAGGGAGA
Found at i:9161381 original size:31 final size:30
Alignment explanation
Indices: 9161343--9161411 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 30
9161333 TTAGGGGTTA
9161343 GGGTTAT-GTTTAAGGGGTTAGGGAGATTTAG
1 GGGTTATGGTTT-A-GGGTTAGGGAGATTTAG
* *
9161374 GGGTTATGGGTTTAGGGTTAGGGGGATTTAT
1 GGGTTAT-GGTTTAGGGTTAGGGAGATTTAG
9161405 GGGTTAT
1 GGGTTAT
9161412 TAAATTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 29 0.85
32 1 0.03
33 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (30 bp):
GGGTTATGGTTTAGGGTTAGGGAGATTTAG
Found at i:9161934 original size:109 final size:109
Alignment explanation
Indices: 9161809--9162048 Score: 426
Period size: 109 Copynumber: 2.2 Consensus size: 109
9161799 TTACCTTTTC
* * * *
9161809 CGGCGTTTTTCATAAAAATGCCACAAAAAATCATTTCATTTTGAACAAAACGACTTCGTTTTGTT
1 CGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTAAACAAAACGACGTCGTTTTGTT
9161874 ATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTG
66 ATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTG
9161918 CGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTAAACAAAACGACGTCGTTTTGTT
1 CGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTAAACAAAACGACGTCGTTTTGTT
9161983 ATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTG
66 ATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTG
* *
9162027 TGGCTTTTTTCGTAAAAACGCC
1 CGGCGTTTTTCGTAAAAACGCC
9162049 GCTATTGCTT
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 125 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (109 bp):
CGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTAAACAAAACGACGTCGTTTTGTT
ATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTG
Found at i:9162185 original size:149 final size:153
Alignment explanation
Indices: 9161914--9162319 Score: 640
Period size: 160 Copynumber: 2.6 Consensus size: 153
9161904 AAATTATTAG
* *
9161914 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTAAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
9161979 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGTGGC-T---TTTTTCGT
66 TGTTATGCTAAAAATCATTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTCGGTTTTTCGT
9162040 AAAAACGCCGCTATTGCTTACCT
131 AAAAACGCCGCTATTGCTTACCT
9162063 TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
9162128 TGTTATGCTAAAAATCATTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTACGGTGT
66 TGTTATGCTAAAAATCATTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCG----T-C-G-GT
*
9162193 TTTTCGTAAAAACGCCGCTATTGCTTATCT
124 TTTTCGTAAAAACGCCGCTATTGCTTACCT
* * *
9162223 TTTGCGGCGTTTTTGATAAAAATGTCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
9162288 TGTTATGCTAAAAATCTTTTATTTTATCTGCT
66 TGTTATGCTAAAAATCATTTATTTTATCTGCT
9162320 TAAATGAAAT
Statistics
Matches: 237, Mismatches: 9, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
149 113 0.48
154 1 0.00
160 123 0.52
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (153 bp):
TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAATCATTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTCGGTTTTTCGT
AAAAACGCCGCTATTGCTTACCT
Found at i:9162816 original size:26 final size:27
Alignment explanation
Indices: 9162776--9162826 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
9162766 CTTATATTTT
9162776 AGCTAGAAATCGACGATG-CCAGAAGA
1 AGCTAGAAATCGACGATGACCAGAAGA
*
9162802 AGCTAGAAATTGACGATGACCAGAA
1 AGCTAGAAATCGACGATGACCAGAA
9162827 ACTGTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.14
Consensus pattern (27 bp):
AGCTAGAAATCGACGATGACCAGAAGA
Found at i:9165039 original size:13 final size:13
Alignment explanation
Indices: 9165021--9165046 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9165011 GAAAGTGCCG
9165021 TTTATAATAATTT
1 TTTATAATAATTT
9165034 TTTATAATAATTT
1 TTTATAATAATTT
9165047 GTGGTGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTATAATAATTT
Found at i:9165161 original size:43 final size:42
Alignment explanation
Indices: 9165103--9165301 Score: 247
Period size: 43 Copynumber: 4.6 Consensus size: 42
9165093 TCTCTAAACA
* *
9165103 CGCCGCTAAAGGTCTTGCTCTTTAGCGGCGTTTTCAGGTAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTAGG-AAAG
* * *
9165146 CGCCGTTAAAAGTCTTGTTCTTTAGTGGCGTTTTTAGGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTA-GGAAAG
*
9165189 CGCCACTAAAGGTCTTGTTCTTTAGCGGCGTTTTTATGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTA-GGAAAG
* * *
9165232 TGCCGTTAAAGTTCTTGTTCTTTAGCGGCGTTTTT-GGAAAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTAGG--AAAG
* *
9165275 CGCCGCTAAAGGTCATGATCTTTAGCG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCG
9165302 TCTCTTATTT
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.01
43 130 0.97
44 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTAGGAAAG
Found at i:9165237 original size:86 final size:86
Alignment explanation
Indices: 9165103--9165301 Score: 278
Period size: 86 Copynumber: 2.3 Consensus size: 86
9165093 TCTCTAAACA
*
9165103 CGCCGCTAAAGGTCTTGCTCTTTAGCGGCGTTTTCAGGTAAAGCGCCGTTAAAAG-TCTTGTTCT
1 CGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTTCAGGTAAAGCGCCGTT-AAAGTTCTTGTTCT
* *
9165167 TTAGTGGCGTTTTTAGG-GAAAG
65 TTAGCGGCGTTTTT-GGAAAAAG
* * * *
9165189 CGCCACTAAAGGTCTTGTTCTTTAGCGGCGTTTTTATGG-AAAGTGCCGTTAAAGTTCTTGTTCT
1 CGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTTCA-GGTAAAGCGCCGTTAAAGTTCTTGTTCT
9165253 TTAGCGGCGTTTTTGGAAAAAG
65 TTAGCGGCGTTTTTGGAAAAAG
*
9165275 CGCCGCTAAAGGTCATGATCTTTAGCG
1 CGCCGCTAAAGGTCTTGATCTTTAGCG
9165302 TCTCTTATTT
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
85 6 0.06
86 93 0.92
87 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.34
Consensus pattern (86 bp):
CGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTTCAGGTAAAGCGCCGTTAAAGTTCTTGTTCTT
TAGCGGCGTTTTTGGAAAAAG
Found at i:9166317 original size:21 final size:21
Alignment explanation
Indices: 9166292--9166334 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
9166282 TATAAACAAA
*
9166292 AAATGCTCGTAACAGCAGCAC
1 AAATGCTCGTAACAGCAACAC
*
9166313 AAATGCTTGTAACAGCAACAC
1 AAATGCTCGTAACAGCAACAC
9166334 A
1 A
9166335 TAACAATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (21 bp):
AAATGCTCGTAACAGCAACAC
Done.