Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 32 of 228
Found at i:9955964 original size:7 final size:7
Alignment explanation
Indices: 9955951--9956021 Score: 63
Period size: 7 Copynumber: 9.4 Consensus size: 7
9955941 TGTTTTTCCC
9955951 CTTTTTT
1 CTTTTTT
9955958 -TTCTTTT
1 CTT-TTTT
9955965 CTTTTTT
1 CTTTTTT
*
9955972 CTTTTTCC
1 CTTTTT-T
9955980 CTTTTTT
1 CTTTTTT
9955987 CTTTTTCT
1 CTTTTT-T
9955995 CCTTCTTTTT
1 -C-T-TTTTT
*
9956005 CTTCTTT
1 CTTTTTT
9956012 CTTTTTT
1 CTTTTTT
9956019 CTT
1 CTT
9956022 CTTCTTCGGC
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
6 2 0.04
7 33 0.62
8 10 0.19
9 2 0.04
10 2 0.04
11 4 0.08
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (7 bp):
CTTTTTT
Found at i:9955970 original size:6 final size:6
Alignment explanation
Indices: 9955955--9956027 Score: 58
Period size: 6 Copynumber: 11.3 Consensus size: 6
9955945 TTTCCCCTTT
**
9955955 TTTTTC -TTTTC TTTTTTC TTTTTCCC TTTTTTC TTTTTC TCCTTC TTTTTC
1 TTTTTC TTTTTC -TTTTTC TTTTT--C -TTTTTC TTTTTC TTTTTC TTTTTC
*
9956006 TTCTTTC TTTTTTC TTCTTC TT
1 TT-TTTC -TTTTTC TTTTTC TT
9956028 CGGCAGCACC
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.09
6 28 0.51
7 14 0.25
8 3 0.05
9 5 0.09
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:9956003 original size:26 final size:26
Alignment explanation
Indices: 9955974--9956027 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
9955964 TCTTTTTTCT
*
9955974 TTTTCCCTTTTTTC-TTTTTCTCCTTC
1 TTTT-CCTTCTTTCTTTTTTCTCCTTC
* *
9956000 TTTTTCTTCTTTCTTTTTTCTTCTTC
1 TTTTCCTTCTTTCTTTTTTCTCCTTC
9956026 TT
1 TT
9956028 CGGCAGCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (26 bp):
TTTTCCTTCTTTCTTTTTTCTCCTTC
Found at i:9956180 original size:20 final size:20
Alignment explanation
Indices: 9956156--9956200 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
9956146 TGCTCTTTCT
9956156 CTTTTTTCTCT-TTTGCTTG
1 CTTTTTTCTCTCTTTGCTTG
* *
9956175 CTTTTTTCTTTCTTTGTTTG
1 CTTTTTTCTCTCTTTGCTTG
9956195 CTTTTT
1 CTTTTT
9956201 ATGTTTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.00, C:0.18, G:0.09, T:0.73
Consensus pattern (20 bp):
CTTTTTTCTCTCTTTGCTTG
Found at i:9956244 original size:17 final size:17
Alignment explanation
Indices: 9956224--9956257 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9956214 GACGGTGGAA
*
9956224 CGACGATGGTGGTGGCG
1 CGACGATCGTGGTGGCG
*
9956241 CGACGGTCGTGGTGGCG
1 CGACGATCGTGGTGGCG
9956258 GTGGGGGCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.21, G:0.53, T:0.18
Consensus pattern (17 bp):
CGACGATCGTGGTGGCG
Found at i:9956553 original size:30 final size:29
Alignment explanation
Indices: 9956506--9956740 Score: 260
Period size: 30 Copynumber: 8.0 Consensus size: 29
9956496 TAAACTCAGT
* *
9956506 AAAATTTTTGGGGTTAAAATGTAATTTTG
1 AAAAGTTTAGGGGTTAAAATGTAATTTTG
*
9956535 ATAAAGTTTAGAGGTTAAAATGTAATTTAT-
1 A-AAAGTTTAGGGGTTAAAATGTAATTT-TG
*
9956565 AAAAGTTTA-GGGTTGAAATGTAATTTTG
1 AAAAGTTTAGGGGTTAAAATGTAATTTTG
* **
9956593 AAAAATTTAGGGGTTGGAATGTAATTTT-
1 AAAAGTTTAGGGGTTAAAATGTAATTTTG
* * *
9956621 AAAATGGTTTAGGGATTGAATTGTAATTTTG
1 AAAA--GTTTAGGGGTTAAAATGTAATTTTG
* *
9956652 AAAAATTTAGGGGTTGAAATGTAATTTTG
1 AAAAGTTTAGGGGTTAAAATGTAATTTTG
*
9956681 AAAAAGTTTAGGGGTTAAAATGTAATTTTAA
1 -AAAAGTTTAGGGGTTAAAATGTAATTTT-G
*
9956712 AAAAGTTTAGGGGTCAAAATGTAAATTTT
1 AAAAGTTTAGGGGTTAAAATGT-AATTTT
9956741 TTTAATTAAT
Statistics
Matches: 178, Mismatches: 18, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
27 1 0.01
28 27 0.15
29 48 0.27
30 91 0.51
31 11 0.06
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.39
Consensus pattern (29 bp):
AAAAGTTTAGGGGTTAAAATGTAATTTTG
Found at i:9956597 original size:29 final size:29
Alignment explanation
Indices: 9956516--9956723 Score: 246
Period size: 29 Copynumber: 7.1 Consensus size: 29
9956506 AAAATTTTTG
* *
9956516 GGGTTAAAATGTAATTTTGATAAAGTTTA
1 GGGTTGAAATGTAATTTTGAAAAAGTTTA
*
9956545 GAGGTTAAAATGTAA-TTT-ATAAAAGTTTA
1 G-GGTTGAAATGTAATTTTGA-AAAAGTTTA
9956574 GGGTTGAAATGTAATTTTGAAAAA-TTTA
1 GGGTTGAAATGTAATTTTGAAAAAGTTTA
* *
9956602 GGGGTTGGAATGTAATTTT-AAAATGGTTTA
1 -GGGTTGAAATGTAATTTTGAAAA-AGTTTA
*
9956632 GGGATTGAATTGTAATTTTGAAAAA-TTTA
1 GGG-TTGAAATGTAATTTTGAAAAAGTTTA
9956661 GGGGTTGAAATGTAATTTTGAAAAAGTTTA
1 -GGGTTGAAATGTAATTTTGAAAAAGTTTA
* *
9956691 GGGGTTAAAATGTAATTTTAAAAAAGTTTA
1 -GGGTTGAAATGTAATTTTGAAAAAGTTTA
9956721 GGG
1 GGG
9956724 GTCAAAATGT
Statistics
Matches: 158, Mismatches: 10, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
28 21 0.13
29 67 0.42
30 66 0.42
31 4 0.03
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (29 bp):
GGGTTGAAATGTAATTTTGAAAAAGTTTA
Found at i:9956651 original size:59 final size:56
Alignment explanation
Indices: 9956516--9956740 Score: 270
Period size: 59 Copynumber: 3.8 Consensus size: 56
9956506 AAAATTTTTG
* * * *
9956516 GGGTTAAAATGTAATTTTGATAAAGTTTAGAGGTTAAAATGTAATTTATAAAAGTTTA
1 GGGTTGAAATGTAATTTTGA-AAAATTTAGGGGTTGAAATGTAATTT-TAAAAGTTTA
*
9956574 GGGTTGAAATGTAATTTTGAAAAATTTAGGGGTTGGAATGTAATTTTAAAATGGTTTA
1 GGGTTGAAATGTAATTTTGAAAAATTTAGGGGTTGAAATGTAATTTTAAAA--GTTTA
*
9956632 GGGATTGAATTGTAATTTTGAAAAATTTAGGGGTTGAAATGTAATTTTGAAAAAGTTTA
1 GGG-TTGAAATGTAATTTTGAAAAATTTAGGGGTTGAAATGTAATTTT--AAAAGTTTA
* * **
9956691 GGGGTTAAAATGTAATTTTAAAAAAGTTTAGGGGTCAAAATGTAAATTTT
1 -GGGTTGAAATGTAATTTTGAAAAA-TTTAGGGGTTGAAATGT-AATTTT
9956741 TTTAATTAAT
Statistics
Matches: 147, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
56 5 0.03
57 22 0.15
58 27 0.18
59 65 0.44
60 18 0.12
61 10 0.07
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.39
Consensus pattern (56 bp):
GGGTTGAAATGTAATTTTGAAAAATTTAGGGGTTGAAATGTAATTTTAAAAGTTTA
Found at i:9957722 original size:42 final size:41
Alignment explanation
Indices: 9957673--9957816 Score: 166
Period size: 42 Copynumber: 3.4 Consensus size: 41
9957663 AAAGCCAGCT
*
9957673 ATGGTCTTACACGAATCTCATATCGATACCAATGTCTCAAAC
1 ATGGTCTTACACGAATCTCATA-CGATGCCAATGTCTCAAAC
* * * *
9957715 ATAGTCTTACACTAATCTTATACAGATGCCAATGT-TCTAGAC
1 ATGGTCTTACACGAATCTCATAC-GATGCCAATGTCTC-AAAC
*
9957757 ATGGTCTTACACGAATCTCATAACGATGCCAATGTC-CAAGGC
1 ATGGTCTTACACGAATCTCAT-ACGATGCCAATGTCTCAA-AC
9957799 ATGGTCTTACACGTAATC
1 ATGGTCTTACACG-AATC
9957817 ACATCTCAGT
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
41 4 0.05
42 76 0.88
43 6 0.07
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (41 bp):
ATGGTCTTACACGAATCTCATACGATGCCAATGTCTCAAAC
Found at i:9969075 original size:27 final size:26
Alignment explanation
Indices: 9969044--9969104 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
9969034 AAATTAGAAC
*
9969044 AAAATATATTTA-TAAACATATTTTATA
1 AAAATATATTAATTAAA-ATATTTTA-A
9969071 AAAAT-TAATTAATTAAAATATTTTAA
1 AAAATAT-ATTAATTAAAATATTTTAA
*
9969097 ATAATATA
1 AAAATATA
9969105 ACTCAAAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
26 7 0.24
27 18 0.62
28 4 0.14
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
AAAATATATTAATTAAAATATTTTAA
Found at i:9972282 original size:29 final size:31
Alignment explanation
Indices: 9972250--9972310 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
9972240 TCCCCTATTT
*
9972250 ACTTTT-CCCTAAAATTTTTACTCC-CTCCC
1 ACTTTTCCCCTAAAACTTTTACTCCTCTCCC
9972279 ACTTTTCCCCTAAAACTTTTACTCCTCTCCC
1 ACTTTTCCCCTAAAACTTTTACTCCTCTCCC
9972310 A
1 A
9972311 TCCCAACCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 6 0.21
30 17 0.59
31 6 0.21
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (31 bp):
ACTTTTCCCCTAAAACTTTTACTCCTCTCCC
Found at i:9972316 original size:127 final size:126
Alignment explanation
Indices: 9972058--9972306 Score: 353
Period size: 127 Copynumber: 2.0 Consensus size: 126
9972048 CCCTTCTATA
* * *
9972058 CCCCAAACCAATTTTCTCCCAATTTTTTTTTGAATATTTTCTTCCCAAAATTTACTTCCCTATTT
1 CCCCAAACCAATTTTCTCCCAATTTTTTTTTGAATATTTTCTCCCCAAAAGTTACTCCCCTATTT
* * **
9972123 ACTTTTCCTCCAATATTTTTACTCCCTCTCACTTTCCTCACAAATTTTTTTACTCCTCTAC
66 ACTTTTCCTCCAAAATTTTTACTCCCTCCCACTTTCCTCACAAATACTTTTACTCCTCTAC
* *
9972184 CCCCAAACCCATTTTCTCCCTATCTTTTTTTTGAATATTTTCTCCCCAAAAGTTACTCCCCTATT
1 CCCCAAACCAATTTTCTCCCAAT-TTTTTTTTGAATATTTTCTCCCCAAAAGTTACTCCCCTATT
*
9972249 TACTTTTCC-CTAAAATTTTTACTCCCTCCCACTTTTCC-C-CTAAA-ACTTTTACTCCTCT
65 TACTTTTCCTCCAAAATTTTTACTCCCTCCCAC-TTTCCTCAC-AAATACTTTTACTCCTCT
9972307 CCCATCCCAA
Statistics
Matches: 110, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
125 13 0.12
126 45 0.41
127 52 0.47
ACGTcount: A:0.22, C:0.33, G:0.01, T:0.44
Consensus pattern (126 bp):
CCCCAAACCAATTTTCTCCCAATTTTTTTTTGAATATTTTCTCCCCAAAAGTTACTCCCCTATTT
ACTTTTCCTCCAAAATTTTTACTCCCTCCCACTTTCCTCACAAATACTTTTACTCCTCTAC
Found at i:9974254 original size:27 final size:27
Alignment explanation
Indices: 9974224--9974293 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
9974214 AATAATCAAT
*
9974224 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
9974251 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAAC-AATTCAAAACATATA
*
9974279 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
9974294 CTAAAATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:9976203 original size:59 final size:57
Alignment explanation
Indices: 9976135--9976299 Score: 174
Period size: 57 Copynumber: 2.9 Consensus size: 57
9976125 TCAAGTGTGT
9976135 TTTCT-TTTTTTAT-TTCAATATAAACAAAAAAATTTGACAATGTTATAAATTTTTTTTA
1 TTTCTATTTTTTATATT--ATATAAA-AAAAAAATTTGACAATGTTATAAATTTTTTTTA
* * ** *
9976193 TTTCTATTTTTTATAATTTTTTAAATTATAAATTTGACAATGTTATAAATTTTTTTTA
1 TTTCTATTTTTTAT-ATTATATAAAAAAAAAATTTGACAATGTTATAAATTTTTTTTA
* * ** *
9976251 TTTCTA-TTTTTATAATTTTTTAAATTATAAATTTGACAATGTTATAAAT
1 TTTCTATTTTTTAT-ATTATATAAAAAAAAAATTTGACAATGTTATAAAT
9976300 AATGTTTAAC
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
57 43 0.43
58 41 0.41
59 13 0.13
61 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.56
Consensus pattern (57 bp):
TTTCTATTTTTTATATTATATAAAAAAAAAATTTGACAATGTTATAAATTTTTTTTA
Found at i:9976273 original size:57 final size:58
Alignment explanation
Indices: 9976164--9976299 Score: 265
Period size: 57 Copynumber: 2.4 Consensus size: 58
9976154 ATAAACAAAA
9976164 AAATTTGACAATGTTATAAATTTTTTTTATTTCTATTTTTTATAATTTTTTAAATTAT
1 AAATTTGACAATGTTATAAATTTTTTTTATTTCTATTTTTTATAATTTTTTAAATTAT
9976222 AAATTTGACAATGTTATAAATTTTTTTTATTTCTA-TTTTTATAATTTTTTAAATTAT
1 AAATTTGACAATGTTATAAATTTTTTTTATTTCTATTTTTTATAATTTTTTAAATTAT
9976279 AAATTTGACAATGTTATAAAT
1 AAATTTGACAATGTTATAAAT
9976300 AATGTTTAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
57 43 0.55
58 35 0.45
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (58 bp):
AAATTTGACAATGTTATAAATTTTTTTTATTTCTATTTTTTATAATTTTTTAAATTAT
Found at i:9977074 original size:14 final size:14
Alignment explanation
Indices: 9977055--9977082 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9977045 TCTTTAAAAA
9977055 GAATTAACTTATTT
1 GAATTAACTTATTT
9977069 GAATTAACTTATTT
1 GAATTAACTTATTT
9977083 TTAAAGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
GAATTAACTTATTT
Found at i:9981045 original size:18 final size:17
Alignment explanation
Indices: 9981024--9981058 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
9981014 TAAAAAATTA
*
9981024 TATAAAATTATTTAAAAT
1 TATAAAA-TATTAAAAAT
9981042 TATAAAATATTAAAAAT
1 TATAAAATATTAAAAAT
9981059 AATTAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAAAATATTAAAAAT
Found at i:9981414 original size:17 final size:17
Alignment explanation
Indices: 9981394--9981456 Score: 65
Period size: 16 Copynumber: 3.6 Consensus size: 17
9981384 TATTTTCTAT
*
9981394 AAAATATTATTAAAATAA
1 AAAAAATTA-TAAAATAA
9981412 AAAAAATTATAAAAT-A
1 AAAAAATTATAAAATAA
* *
9981428 AAAGAATTATCAAATAA
1 AAAAAATTATAAAATAA
9981445 TATAAAAATTAT
1 -A-AAAAATTAT
9981457 TAATGTTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
16 14 0.37
17 7 0.18
18 9 0.24
19 8 0.21
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
AAAAAATTATAAAATAA
Found at i:9981605 original size:20 final size:18
Alignment explanation
Indices: 9981563--9981644 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 18
9981553 TTATAAAGTA
9981563 ATAAAACATTTAAAATTT
1 ATAAAACATTTAAAATTT
*
9981581 ATAAAACATATTAAGATTCT
1 ATAAAACAT-TTAAAATT-T
**
9981601 ATAAAAATCATAAAAAATTT
1 AT-AAAA-CATTTAAAATTT
*
9981621 AAAAATACA-TTAAAATTAT
1 ATAAA-ACATTTAAAATT-T
9981640 ATAAA
1 ATAAA
9981645 CTTATAAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
18 15 0.30
19 17 0.34
20 6 0.12
21 9 0.18
22 3 0.06
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (18 bp):
ATAAAACATTTAAAATTT
Found at i:9982184 original size:18 final size:18
Alignment explanation
Indices: 9982109--9982246 Score: 79
Period size: 20 Copynumber: 7.4 Consensus size: 18
9982099 AGTTTACATG
*
9982109 AATTTTATTTATTTT-AT
1 AATTTTATTAATTTTAAT
*
9982126 AATTTTGTTTACATTTTAAT
1 AATTTT-ATTA-ATTTTAAT
* *
9982146 TATTTT-TTAAGAATTCTAAT
1 AATTTTATT---AATTTTAAT
9982166 AATTTT-TTAATTTTAA-
1 AATTTTATTAATTTTAAT
* *
9982182 ATATTTTAAATAAGTTTTATT
1 A-ATTTT-ATTAA-TTTTAAT
*
9982203 AATTTTATTAATTTTTAT
1 AATTTTATTAATTTTAAT
*
9982221 AA-TTTATTAGATTTTATT
1 AATTTTATTA-ATTTTAAT
*
9982239 TATTTTAT
1 AATTTTAT
9982247 AATATTTACA
Statistics
Matches: 94, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
16 1 0.01
17 25 0.27
18 18 0.19
19 17 0.18
20 31 0.33
21 2 0.02
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (18 bp):
AATTTTATTAATTTTAAT
Found at i:9982236 original size:10 final size:9
Alignment explanation
Indices: 9982109--9982246 Score: 70
Period size: 9 Copynumber: 14.9 Consensus size: 9
9982099 AGTTTACATG
9982109 AATTTTATT
1 AATTTTATT
*
9982118 TATTTTA-T
1 AATTTTATT
*
9982126 AATTTTGTTT
1 AATTTT-ATT
9982136 ACATTTTAATT
1 A-ATTTT-ATT
* **
9982147 ATTTTTTAAG
1 A-ATTTTATT
* *
9982157 AATTCTAAT
1 AATTTTATT
9982166 AATTTT-TT
1 AATTTTATT
*
9982174 AATTTTA-A
1 AATTTTATT
*
9982182 ATATTTTAAAT
1 A-ATTTT-ATT
9982193 AAGTTTTATT
1 AA-TTTTATT
9982203 AATTTTATT
1 AATTTTATT
9982212 AATTTT-TAT
1 AATTTTAT-T
9982221 AA-TTTATT
1 AATTTTATT
9982229 AGATTTTATT
1 A-ATTTTATT
*
9982239 TATTTTAT
1 AATTTTAT
9982247 AATATTTACA
Statistics
Matches: 99, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
8 20 0.20
9 46 0.46
10 16 0.16
11 17 0.17
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (9 bp):
AATTTTATT
Found at i:9982244 original size:26 final size:26
Alignment explanation
Indices: 9982197--9982249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
9982187 TTAAATAAGT
9982197 TTTATTAATTTTATTAATTTTTATAA
1 TTTATTAATTTTATTAATTTTTATAA
*
9982223 TTTATTAGATTTTATTTA-TTTTATAA
1 TTTATTA-ATTTTATTAATTTTTATAA
9982249 T
1 T
9982250 ATTTACAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTATTAATTTTATTAATTTTTATAA
Found at i:9982253 original size:19 final size:19
Alignment explanation
Indices: 9982183--9982253 Score: 51
Period size: 19 Copynumber: 3.8 Consensus size: 19
9982173 TAATTTTAAA
9982183 TATTTTA-AATAAGTTTTATT
1 TATTTTATAAT-A-TTTTATT
*
9982203 AATTTTATTAAT-TTTTA--
1 TATTTTA-TAATATTTTATT
* * *
9982220 TAATTTATTAGATTTTATT
1 TATTTTATAATATTTTATT
9982239 TATTTTATAATATTT
1 TATTTTATAATATTT
9982254 ACAAGTTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 11
0.67 0.14 0.19
Matches are distributed among these distances:
16 2 0.05
17 10 0.26
19 17 0.45
20 6 0.16
22 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
TATTTTATAATATTTTATT
Found at i:9982275 original size:10 final size:10
Alignment explanation
Indices: 9982196--9982293 Score: 61
Period size: 9 Copynumber: 10.5 Consensus size: 10
9982186 TTTAAATAAG
9982196 TTTTATTA-A
1 TTTTATTATA
9982205 TTTTATTA-A
1 TTTTATTATA
9982214 -TTT-TTATA
1 TTTTATTATA
* *
9982222 ATTTATTAGA
1 TTTTATTATA
9982232 TTTTATT-TA
1 TTTTATTATA
*
9982241 TTTTATAATA
1 TTTTATTATA
*
9982251 -TTTA-CA-A
1 TTTTATTATA
*
9982258 GTTT-TTATA
1 TTTTATTATA
9982267 TTTTATTATA
1 TTTTATTATA
9982277 GTTTTTATTATA
1 --TTTTATTATA
*
9982289 ATTTA
1 TTTTA
9982294 ATAAGTTTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
7 4 0.06
8 9 0.13
9 27 0.38
10 21 0.30
12 10 0.14
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTATTATA
Found at i:9982774 original size:84 final size:84
Alignment explanation
Indices: 9982667--9982893 Score: 296
Period size: 84 Copynumber: 2.7 Consensus size: 84
9982657 AAGATCAGGG
* *** * *
9982667 TCTTTAGCGGTGCTTTTTTCTC-AACCCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCAC
1 TCTTTAGCGGCGCTTTACCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTAACCAC
9982731 AAACGCCACGAAGAACCTAA
66 AAACGCCACGAAGAA-CTAA
* *
9982751 TCTTTAGCGGCGCTTTCCCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTCAACCAC
1 TCTTTAGCGGCGCTTTACCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTAACCAC
**
9982816 AAACGCCATTAAGAACTAA
66 AAACGCCACGAAGAACTAA
* * * *
9982835 TCTTTAGCGGCGCTTTACCCACAAACGCCGCTAA-AGACCATGATCTTTAGTGGCGCTTT
1 TCTTTAGCGGCGCTTTACCCTCAAACGCCGC-AATAGACCCTGATCTATAGCGGCGCTTT
9982894 TCACAACGCC
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
84 72 0.57
85 54 0.43
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (84 bp):
TCTTTAGCGGCGCTTTACCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTAACCAC
AAACGCCACGAAGAACTAA
Found at i:9982808 original size:43 final size:42
Alignment explanation
Indices: 9982693--9982928 Score: 207
Period size: 43 Copynumber: 5.6 Consensus size: 42
9982683 TTTCTCAACC
* *
9982693 CCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCACAAACG
1 CCGCAA-AGACCCTGATCTTTAGCGGCGCTTTCACCACAAACG
* * * * * *
9982736 CCACGAAGAACCTAATCTTTAGCGGCGCTTTCCCCTCAAACG
1 CCGCAAAGACCCTGATCTTTAGCGGCGCTTTCACCACAAACG
*
9982778 CCGCAATAGACCCTGATCTATAGCGGCGC-TTCAACCACAAACG
1 CCGCAA-AGACCCTGATCTTTAGCGGCGCTTTC-ACCACAAACG
*** * *
9982821 CCATTAAGA-ACTAATCTTTAGCGGCGCTTT-ACCCACAAACG
1 CCGCAAAGACCCTGATCTTTAGCGGCGCTTTCA-CCACAAACG
* * *
9982862 CCGCTAAAGACCATGATCTTTAGTGGCGCTTT--TCAC-AACG
1 CCGC-AAAGACCCTGATCTTTAGCGGCGCTTTCACCACAAACG
*
9982902 CCGCTAAAGACCCTTATC-TTAGCGGCG
1 CCGC-AAAGACCCTGATCTTTAGCGGCG
9982929 TTTTTTTAAA
Statistics
Matches: 155, Mismatches: 32, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
39 8 0.05
40 21 0.14
41 29 0.19
42 46 0.30
43 51 0.33
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.22
Consensus pattern (42 bp):
CCGCAAAGACCCTGATCTTTAGCGGCGCTTTCACCACAAACG
Found at i:9982857 original size:41 final size:41
Alignment explanation
Indices: 9982708--9982863 Score: 154
Period size: 41 Copynumber: 3.7 Consensus size: 41
9982698 ATAGACCCTG
**
9982708 ATCTATAGCGGCGCTTTGA-CCACAAACGCCACGAAGAACCTA
1 ATCTATAGCGGCGCTTT-ACCCACAAACGCCAATAAGAA-CTA
* * * * *
9982750 ATCTTTAGCGGCGCTTTCCCCTCAAACGCCGCAAT-AGACCCTG
1 ATCTATAGCGGCGCTTTACCCACAAACG-C-CAATAAGA-ACTA
* * *
9982793 ATCTATAGCGGCGCTTCAACCACAAACGCCATTAAGAACTA
1 ATCTATAGCGGCGCTTTACCCACAAACGCCAATAAGAACTA
*
9982834 ATCTTTAGCGGCGCTTTACCCACAAACGCC
1 ATCTATAGCGGCGCTTTACCCACAAACGCC
9982864 GCTAAAGACC
Statistics
Matches: 91, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 32 0.35
42 28 0.31
43 29 0.32
44 2 0.02
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (41 bp):
ATCTATAGCGGCGCTTTACCCACAAACGCCAATAAGAACTA
Found at i:9982913 original size:40 final size:42
Alignment explanation
Indices: 9982586--9982928 Score: 202
Period size: 42 Copynumber: 8.2 Consensus size: 42
9982576 TGTTGGTCTA
* * * * *
9982586 TAGCGGCGCTTCTAGCACAAACGCCGCTGAAGACTAAGACCTT
1 TAGCGGCGCTT-TACCACAAACGCCGCTAAAGACCATGATCTT
**** ** * * *
9982629 TAGCGGCGCTTTAGTGGAAGTGCCGCTAAAGATCAGGGTCTT
1 TAGCGGCGCTTTACCACAAACGCCGCTAAAGACCATGATCTT
* ** * * * *
9982671 TAGCGGTGCTTTTTTCTC-AACCCCGC-AATAGACCCTGATCTA
1 TAGCGGCGC-TTTACCACAAACGCCGCTAA-AGACCATGATCTT
* * *
9982713 TAGCGGCGCTTTGACCACAAACGCCAC-GAAGAACC-TAATCTT
1 TAGCGGCGCTTT-ACCACAAACGCCGCTAAAG-ACCATGATCTT
* * * *
9982755 TAGCGGCGCTTTCCCCTCAAACGCCGC-AATAGACCCTGATCTA
1 TAGCGGCGCTTT-ACCACAAACGCCGCTAA-AGACCATGATCTT
* * * * *
9982798 TAGCGGCGCTTCAACCACAAACGCC-ATTAAGAAC-TAATCTT
1 TAGCGGCGCTT-TACCACAAACGCCGCTAAAGACCATGATCTT
9982839 TAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCATGATCTT
1 TAGCGGCGCTTTA-CCACAAACGCCGCTAAAGACCATGATCTT
* * * *
9982882 TAGTGGCGCTTT-TCAC-AACGCCGCTAAAGACCCTTATC-T
1 TAGCGGCGCTTTACCACAAACGCCGCTAAAGACCATGATCTT
9982921 TAGCGGCG
1 TAGCGGCG
9982929 TTTTTTTAAA
Statistics
Matches: 229, Mismatches: 59, Indels: 28
0.72 0.19 0.09
Matches are distributed among these distances:
39 8 0.03
40 21 0.09
41 35 0.15
42 95 0.41
43 70 0.31
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (42 bp):
TAGCGGCGCTTTACCACAAACGCCGCTAAAGACCATGATCTT
Found at i:9983245 original size:21 final size:21
Alignment explanation
Indices: 9983219--9983314 Score: 102
Period size: 21 Copynumber: 4.6 Consensus size: 21
9983209 TTTAACGCTA
* *
9983219 CTCTGCTTCCCTTGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * **
9983240 CTCTGCTTCCCTCGTTTTAGC
1 CTCTGCTTCTCTCGCTGCAGC
*
9983261 CTCTGCTTCTCTCGCTGTAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * *
9983282 CTGTACTTCTCTCGCTGCTGC
1 CTCTGCTTCTCTCGCTGCAGC
9983303 CTCTGCTTCTCT
1 CTCTGCTTCTCT
9983315 TGTTGCCGCA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.04, C:0.40, G:0.17, T:0.40
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCAGC
Found at i:9983396 original size:66 final size:66
Alignment explanation
Indices: 9983302--9983467 Score: 192
Period size: 66 Copynumber: 2.5 Consensus size: 66
9983292 CTCGCTGCTG
* * * * *
9983302 CCTCTGCTTCTCTTGTTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAGCTG-TAACTGGAGTTCTTCATATCTTT-GTT
9983365 GAA
64 GAA
* * * *
9983368 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAACTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAGCTGTAACTGGAGTTCTTCATATCTTTGTTGA
9983433 A
66 A
* * *
9983434 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAG
9983468 TTGTGTAATT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 1 0.01
66 80 0.94
67 4 0.05
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAGCTGTAACTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:9988611 original size:17 final size:16
Alignment explanation
Indices: 9988589--9988623 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9988579 AAGTTATGTA
9988589 TTGTGTAGCTATGTAAG
1 TTGTGTA-CTATGTAAG
*
9988606 TTGTGTATTATGTAAG
1 TTGTGTACTATGTAAG
9988622 TT
1 TT
9988624 ATTATTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.23, C:0.03, G:0.26, T:0.49
Consensus pattern (16 bp):
TTGTGTACTATGTAAG
Found at i:9988619 original size:16 final size:16
Alignment explanation
Indices: 9988598--9988871 Score: 100
Period size: 16 Copynumber: 17.8 Consensus size: 16
9988588 ATTGTGTAGC
*
9988598 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
9988614 TATGTAAGTTAT-TAT
1 TATGTAAGTTATGTAT
* *
9988629 TATG---CTTAAG--T
1 TATGTAAGTTATGTAT
*
9988640 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
*
9988656 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * **
9988672 AATGTTAGTTATCAAAGT
1 TATGTAAGTTAT-GTA-T
9988690 TATGT-A-TTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
9988706 TATTTAAGTTATGTA-
1 TATGTAAGTTATGTAT
*
9988721 CATGTAA-TTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
9988738 TGTGT-A-TAATGTTAGT
1 TATGTAAGTTATG-TA-T
** *
9988754 TATCAAAGTAATGTAT
1 TATGTAAGTTATGTAT
*
9988770 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * **
9988786 AATGTTAGTTATCAAGT
1 TATGTAAGTTATGTA-T
*
9988803 TATGT-A-TTATGTGT
1 TATGTAAGTTATGTAT
* *
9988817 T-TCT-A-TTAAG--T
1 TATGTAAGTTATGTAT
*
9988828 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
*
9988844 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
9988860 TATGTAAGTTAT
1 TATGTAAGTTAT
9988872 TAAAAATTGA
Statistics
Matches: 191, Mismatches: 44, Indels: 46
0.68 0.16 0.16
Matches are distributed among these distances:
11 7 0.04
12 5 0.03
13 8 0.04
14 14 0.07
15 17 0.09
16 108 0.57
17 16 0.08
18 16 0.08
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:9988683 original size:25 final size:25
Alignment explanation
Indices: 9988635--9988784 Score: 119
Period size: 25 Copynumber: 6.1 Consensus size: 25
9988625 TTATTATGCT
9988635 TAAGTTATGTAAGTAATG-TA-TTATG
1 TAAGTTATGT-A-TAATGTTAGTTATG
* *
9988660 TAAGTTGTGTATAATGTTAGTTATC
1 TAAGTTATGTATAATGTTAGTTATG
* * * *
9988685 AAAGTTATGTATTATGTAAGTTATT
1 TAAGTTATGTATAATGTTAGTTATG
* *
9988710 TAAGTTATGTA-CATG-TAATTATG
1 TAAGTTATGTATAATGTTAGTTATG
* *
9988733 TAAGTTGTGTATAATGTTAGTTATC
1 TAAGTTATGTATAATGTTAGTTATG
* * * * *
9988758 AAAGTAATGTATTATGTAAGTTGTG
1 TAAGTTATGTATAATGTTAGTTATG
9988783 TA
1 TA
9988785 TAATGTTAGT
Statistics
Matches: 97, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
23 20 0.21
24 9 0.09
25 68 0.70
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.45
Consensus pattern (25 bp):
TAAGTTATGTATAATGTTAGTTATG
Found at i:9988695 original size:41 final size:40
Alignment explanation
Indices: 9988603--9988871 Score: 239
Period size: 41 Copynumber: 7.0 Consensus size: 40
9988593 GTAGCTATGT
* * * *
9988603 AAGTTGTGTATTATGTAAGTTAT-TATTATGCTTAAGTTATGT
1 AAGTTATGTATTATGTAAGTTGTGTATAATG-TT-AGTTAT-C
*
9988645 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATC
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATC
*
9988685 AAAGTTATGTATTATGTAAGTTAT-T-TAA-GTTA-TGTA-C
1 -AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGT-TATC
*
9988722 ATG-TA---ATTATGTAAGTTGTGTATAATGTTAGTTATC
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATC
*
9988758 AAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATC
1 -AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATC
* *
9988799 AAGTTATGTATTATGT--GTT-TCTATTAA-GTTA--TGT-
1 AAGTTATGTATTATGTAAGTTGTGTA-TAATGTTAGTTATC
* * *
9988833 AAGTTGTGTATTATGTAAGTTGTGTATTATGTAAGTTAT
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTAT
9988872 TAAAAATTGA
Statistics
Matches: 188, Mismatches: 19, Indels: 43
0.75 0.08 0.17
Matches are distributed among these distances:
32 13 0.07
33 1 0.01
34 18 0.10
35 10 0.05
36 9 0.05
37 17 0.09
38 13 0.07
39 5 0.03
40 16 0.09
41 58 0.31
42 22 0.12
43 6 0.03
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (40 bp):
AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATC
Found at i:9988797 original size:25 final size:23
Alignment explanation
Indices: 9988762--9988874 Score: 68
Period size: 25 Copynumber: 4.7 Consensus size: 23
9988752 GTTATCAAAG
*
9988762 TAATG-TATTATGTAAGTTGTGTA
1 TAATGTTATTAT-TAAGTTATGTA
*
9988785 TAATGTTAGTTATCAAGTTATGTA
1 TAATGTTA-TTATTAAGTTATGTA
* *
9988809 TTATGTGTTTCTATTAAGTTATGTA
1 TAATGT-TAT-TATTAAGTTATGTA
* *
9988834 -AGTTGTGTATTATGTAAGTTGTGTA
1 TA-ATGT-TATTAT-TAAGTTATGTA
* *
9988859 TTATGTAAGTTATTAA
1 TAATGTTA-TTATTAA
9988875 AAATTGAAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 15
0.72 0.12 0.15
Matches are distributed among these distances:
23 5 0.07
24 24 0.34
25 41 0.59
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (23 bp):
TAATGTTATTATTAAGTTATGTA
Found at i:9989020 original size:119 final size:118
Alignment explanation
Indices: 9988874--9989146 Score: 469
Period size: 120 Copynumber: 2.3 Consensus size: 118
9988864 TAAGTTATTA
* *
9988874 AAAATTGAAATGTAGGATATATATCCATACCATATAT-GGGTGATATATTAAAATATAGGTTTTA
1 AAAATTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAATATAGGTTTTA
9988938 ATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTGTA-AT
66 ATATTTAAAAATAACATTTACAATTATTTTT-AAATTATAAAATTCA-TTG-ACAT
*
9988993 AAATTTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAATATAGGTTTTA
1 AAAATTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAATATAGGTTTTA
*
9989058 ATATTTAAAAATAACATTTACAATTATTTTTAAATTATAAAATTTATTGACAT
66 ATATTTAAAAATAACATTTACAATTATTTTTAAATTATAAAATTCATTGACAT
9989111 AAAATTGAAATATAGGTTATATATCCATACCATATA
1 AAAATTGAAATATAGGTTATATATCCATACCATATA
9989147 GCTAAATTTT
Statistics
Matches: 147, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
117 1 0.01
118 40 0.27
119 48 0.33
120 58 0.39
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (118 bp):
AAAATTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAATATAGGTTTTA
ATATTTAAAAATAACATTTACAATTATTTTTAAATTATAAAATTCATTGACAT
Found at i:9989201 original size:18 final size:18
Alignment explanation
Indices: 9989178--9989264 Score: 108
Period size: 18 Copynumber: 4.8 Consensus size: 18
9989168 TATATAAAAG
9989178 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
9989196 TTTAAGTAATGTAAGTTATAA
1 TTTAAGTAATGTAA--TAT-A
**
9989217 TTTTTGTAA-GTAATATA
1 TTTAAGTAATGTAATATA
9989234 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
9989252 TTT-AGTAA-GTAAT
1 TTTAAGTAATGTAAT
9989265 GTAAGTAATG
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
16 5 0.08
17 13 0.21
18 28 0.46
20 7 0.11
21 8 0.13
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:9989230 original size:38 final size:38
Alignment explanation
Indices: 9989182--9989409 Score: 177
Period size: 38 Copynumber: 6.0 Consensus size: 38
9989172 TAAAAGTTTA
*
9989182 AGTAATGTAATATATTTAAGTAATGTAAGTTATAATTTT
1 AGTAA-GTAATATATTTAAGTAATATAAGTTATAATTTT
* *
9989221 TGTAAGTAATATATTTAAGTAATGTAA--TAT-A-TTT
1 AGTAAGTAATATATTTAAGTAATATAAGTTATAATTTT
* ** *
9989255 AGTAAGTAATGTAAGTAATGTAATATATACTT-TAATTTT
1 AGTAAGTAATATATTTAA-GTAATATA-AGTTATAATTTT
* * * *
9989294 AGTAAGTCATGTATTTAAGTAATAT-ATTTAATCCAATTCT
1 AGTAAGTAATATATTTAAGTAATATAAGTT-AT--AATTTT
* * *
9989334 AGT-AGTAATGTATTTAAGTAATAT-ATTTAGTAAATTT
1 AGTAAGTAATATATTTAAGTAATATAAGTTA-TAATTTT
* *
9989371 AGTAATTAATATATTTAAGT-ATGTAAGTTATAAATTTT
1 AGTAAGTAATATATTTAAGTAATATAAGTTAT-AATTTT
9989409 A
1 A
9989410 AAATATATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 29
0.76 0.09 0.14
Matches are distributed among these distances:
34 17 0.11
35 8 0.05
36 7 0.04
37 12 0.08
38 57 0.37
39 47 0.30
40 8 0.05
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (38 bp):
AGTAAGTAATATATTTAAGTAATATAAGTTATAATTTT
Found at i:9989259 original size:30 final size:30
Alignment explanation
Indices: 9989180--9989282 Score: 103
Period size: 30 Copynumber: 3.6 Consensus size: 30
9989170 TATAAAAGTT
9989180 TAAGTAATGTAATATA-TT--TAAGTAATG
1 TAAGTAATGTAATATATTTAGTAAGTAATG
* * *
9989207 TAAGT--TATAAT-TTTTGTAAGTAA-TATATT
1 TAAGTAATGTAATATATT-T-AGTAAGTA-ATG
9989236 TAAGTAATGTAATATATTTAGTAAGTAATG
1 TAAGTAATGTAATATATTTAGTAAGTAATG
9989266 TAAGTAATGTAATATAT
1 TAAGTAATGTAATATAT
9989283 ACTTTAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 17
0.72 0.07 0.20
Matches are distributed among these distances:
24 1 0.02
25 6 0.10
26 1 0.02
27 5 0.08
28 2 0.03
29 10 0.17
30 24 0.40
31 8 0.13
32 3 0.05
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.44
Consensus pattern (30 bp):
TAAGTAATGTAATATATTTAGTAAGTAATG
Found at i:9992922 original size:8 final size:7
Alignment explanation
Indices: 9992902--9992970 Score: 74
Period size: 7 Copynumber: 10.3 Consensus size: 7
9992892 TTAATTGACG
9992902 CCCTAAA
1 CCCTAAA
9992909 CCCTAAA
1 CCCTAAA
9992916 TCCCT-AA
1 -CCCTAAA
*
9992923 CCCTAAC
1 CCCTAAA
9992930 CCCTAAA
1 CCCTAAA
*
9992937 CTCT-AA
1 CCCTAAA
9992943 CCCTAAA
1 CCCTAAA
*
9992950 TCCT-AA
1 CCCTAAA
9992956 CCCT-AA
1 CCCTAAA
9992962 CCCTAAA
1 CCCTAAA
9992969 CC
1 CC
9992971 TTATATCCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
6 20 0.38
7 28 0.54
8 4 0.08
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:9992928 original size:6 final size:6
Alignment explanation
Indices: 9992902--9992967 Score: 60
Period size: 6 Copynumber: 10.0 Consensus size: 6
9992892 TTAATTGACG
*
9992902 CCCTAAA CCCTAAA TCCCTAA CCCTAA CCCCTAAA CTCTAA CCCTAAA
1 CCCT-AA CCCT-AA -CCCTAA CCCTAA -CCCT-AA CCCTAA CCCT-AA
*
9992950 TCCTAA CCCTAA CCCTAA
1 CCCTAA CCCTAA CCCTAA
9992968 ACCTTATATC
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
6 24 0.47
7 21 0.41
8 6 0.12
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.20
Consensus pattern (6 bp):
CCCTAA
Found at i:9992935 original size:13 final size:13
Alignment explanation
Indices: 9992902--9992967 Score: 73
Period size: 13 Copynumber: 5.0 Consensus size: 13
9992892 TTAATTGACG
9992902 CCCTAAACCCTAAA
1 CCCTAAACCCT-AA
9992916 TCCCT-AACCCTAA
1 -CCCTAAACCCTAA
*
9992929 CCCCTAAACTCTAA
1 -CCCTAAACCCTAA
*
9992943 CCCTAAATCCTAA
1 CCCTAAACCCTAA
9992956 CCCT-AACCCTAA
1 CCCTAAACCCTAA
9992968 ACCTTATATC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
12 7 0.16
13 21 0.47
14 13 0.29
15 4 0.09
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.20
Consensus pattern (13 bp):
CCCTAAACCCTAA
Found at i:9993670 original size:17 final size:17
Alignment explanation
Indices: 9993650--9993684 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9993640 ATAATTTTTA
9993650 TTTTTT-TATTTCATTT
1 TTTTTTGTATTTCATTT
*
9993666 TTTTTTGTATTTTATTT
1 TTTTTTGTATTTCATTT
9993683 TT
1 TT
9993685 CTTATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.11, C:0.03, G:0.03, T:0.83
Consensus pattern (17 bp):
TTTTTTGTATTTCATTT
Found at i:9995100 original size:41 final size:40
Alignment explanation
Indices: 9994989--9995209 Score: 245
Period size: 40 Copynumber: 5.5 Consensus size: 40
9994979 TTATTATTAC
* * * *
9994989 TAGCGGCGCTT-TTTAAAAACGCCGCTAAAGGCCACAGCAA
1 TAGC-GCGCTTATTCAAAAACGCCGCTAAAGACCAGAGCAT
* * * * *
9995029 TACCGCGCTTCTTTAAAAACGCCGCTAAAGATCTGAGCAT
1 TAGCGCGCTTATTCAAAAACGCCGCTAAAGACCAGAGCAT
*
9995069 TAGCGGCGCTTATTCAAAAAC-CCGCTAAAAGA-CAAAGCAT
1 TAGC-GCGCTTATTCAAAAACGCCGCT-AAAGACCAGAGCAT
*
9995109 TAGCGCGCTT-TTCAAAAACGCCGCTAAAGGCCAGAGCAT
1 TAGCGCGCTTATTCAAAAACGCCGCTAAAGACCAGAGCAT
* *
9995148 TAGCAGCGCTTACTCAAAAACGCCGCTAAAGGCCAGAGCAT
1 TAGC-GCGCTTATTCAAAAACGCCGCTAAAGACCAGAGCAT
*
9995189 TAGCG-GTTTATTCAAAAACGC
1 TAGCGCGCTTATTCAAAAACGC
9995210 GCAAAGCCCA
Statistics
Matches: 158, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
38 13 0.08
39 42 0.27
40 52 0.33
41 51 0.32
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.19
Consensus pattern (40 bp):
TAGCGCGCTTATTCAAAAACGCCGCTAAAGACCAGAGCAT
Found at i:9995523 original size:18 final size:18
Alignment explanation
Indices: 9995486--9995536 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
9995476 CATGATTAAG
9995486 AATATAAGAGCTTA-TAAAT
1 AATATAA-AG-TTATTAAAT
9995505 AATTATAAA-TTATTAAAT
1 AA-TATAAAGTTATTAAAT
9995523 AATATAAAGTTATT
1 AATATAAAGTTATT
9995537 GTGAAGGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.31
18 12 0.41
19 3 0.10
20 5 0.17
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (18 bp):
AATATAAAGTTATTAAAT
Found at i:9996626 original size:22 final size:21
Alignment explanation
Indices: 9996593--9996642 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 21
9996583 TAAAAAAAAC
9996593 AAATAAACTAATAATGG-AATA
1 AAATAAACTAATAATGGCAA-A
9996614 AAATAACACTAATAATGGCAAA
1 AAATAA-ACTAATAATGGCAAA
9996636 AAATAAA
1 AAATAAA
9996643 AATAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.26
22 18 0.67
23 2 0.07
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (21 bp):
AAATAAACTAATAATGGCAAA
Found at i:9996649 original size:13 final size:13
Alignment explanation
Indices: 9996633--9996657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9996623 TAATAATGGC
9996633 AAAAAATAAAAAT
1 AAAAAATAAAAAT
9996646 AAAAAATAAAAA
1 AAAAAATAAAAA
9996658 AAACAAGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:10000255 original size:5 final size:5
Alignment explanation
Indices: 10000242--10000271 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
10000232 TTTAATACAG
10000242 TTCATA TTCAA TTCAA TTCAA TTCAA TTCA
1 TTCA-A TTCAA TTCAA TTCAA TTCAA TTCA
10000272 CATCCTAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (5 bp):
TTCAA
Found at i:10004795 original size:19 final size:19
Alignment explanation
Indices: 10004771--10004814 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
10004761 TAAAAGCAAC
10004771 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
10004790 ACAACATGATTCCAAATAA
1 ACAACATCAACCCAAATAA
10004809 ACAACA
1 ACAACA
10004815 AAAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:10007644 original size:185 final size:186
Alignment explanation
Indices: 10007366--10007755 Score: 655
Period size: 185 Copynumber: 2.1 Consensus size: 186
10007356 AATTAAATTA
10007366 AAATTAAT-TAATA-TA-ATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACA
1 AAATTAATATAATAGTACA-AGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACA
*
10007428 TTTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAA
65 GTTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAA
* * *
10007493 AC-AAAAAAAGTCTGTTAAGCTATC-GTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
130 ACAAAAAAAAGTATGTTAAACCA-CAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
* *
10007549 AAATTAATATAATAGTACAAGTACGACATCATAAATTAAACAAAAAAAAGTATGTTAAACTACAG
1 AAATTAATATAATAGTACAAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACAG
*
10007614 TTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAGCATAAATTAAA
66 TTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAAA
10007679 CAAAAAAAAAGTATGTTAAACCACAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
131 C-AAAAAAAAGTATGTTAAACCACAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
10007736 AAATTAATATAATAGTACAA
1 AAATTAATATAATAGTACAA
10007756 CAGCATAAAT
Statistics
Matches: 194, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
183 8 0.04
184 5 0.03
185 110 0.57
186 2 0.01
187 69 0.36
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (186 bp):
AAATTAATATAATAGTACAAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACAG
TTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAAA
CAAAAAAAAGTATGTTAAACCACAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
Found at i:10007713 original size:91 final size:90
Alignment explanation
Indices: 10007371--10007768 Score: 638
Period size: 91 Copynumber: 4.4 Consensus size: 90
10007361 AATTAAAATT
* * *
10007371 AATTAATATAATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACATTTTAAAC
1 AATTAATATAATAGTACAATAGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTTTAAAC
10007436 TTTAAAGTTAGTTAATTGAAGCCTA
66 TTTAAAGTTAGTTAATTGAAGCCTA
* * *
10007461 AATTAATATAATAGTACAATAACATAAATTAAAC-AAAAAAAGTCTGTTAAGCTATC-GTTTAAA
1 AATTAATATAATAGTACAATAGCATAAATTAAACAAAAAAAAGTATGTTAAACTA-CAGTTTAAA
10007524 CTTTAAAGTTAGTTAATTGAAGCCTA
65 CTTTAAAGTTAGTTAATTGAAGCCTA
10007550 AATTAATATAATAGTACAAGTACGACATCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGT
1 AATTAATATAATAGTACAA-TA-G----CATAAATTAAACAAAAAAAAGTATGTTAAACTACAGT
10007615 TTAAACTTTAAAGTTAGTTAATTGAAGCCTA
60 TTAAACTTTAAAGTTAGTTAATTGAAGCCTA
*
10007646 AATTAATATAATAGTACAATAGCATAAATTAAACAAAAAAAAAGTATGTTAAACCACAGTTTAAA
1 AATTAATATAATAGTACAATAGCATAAATTAAAC-AAAAAAAAGTATGTTAAACTACAGTTTAAA
10007711 CTTTAAAGTTAGTTAATTGAAGCCTA
65 CTTTAAAGTTAGTTAATTGAAGCCTA
*
10007737 AATTAATATAATAGTACAACAGCATAAATTAA
1 AATTAATATAATAGTACAATAGCATAAATTAA
10007769 TTAATTGAAG
Statistics
Matches: 289, Mismatches: 9, Indels: 19
0.91 0.03 0.06
Matches are distributed among these distances:
89 69 0.24
90 48 0.17
91 86 0.30
94 1 0.00
95 15 0.05
96 70 0.24
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (90 bp):
AATTAATATAATAGTACAATAGCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTTTAAAC
TTTAAAGTTAGTTAATTGAAGCCTA
Found at i:10008094 original size:17 final size:17
Alignment explanation
Indices: 10008072--10008123 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
10008062 TTTTATCTAT
*
10008072 TAATATTATGTTATTAC
1 TAATATTATATTATTAC
10008089 TAATATTATATTATTAC
1 TAATATTATATTATTAC
*
10008106 TAATATTACATTATTAC
1 TAATATTATATTATTAC
10008123 T
1 T
10008124 TTGGGAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (17 bp):
TAATATTATATTATTAC
Found at i:10008691 original size:3 final size:3
Alignment explanation
Indices: 10008683--10008712 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10008673 GGTTTATTTT
10008683 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
10008713 GGTTTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10009517 original size:44 final size:44
Alignment explanation
Indices: 10009453--10009543 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
10009443 ATTGCTAAGA
*
10009453 TAATATTAAAATAATATACACTAATCAGAGTTTAAGTAAAAAAT
1 TAATATTAAAATAATATACACTAATCAAAGTTTAAGTAAAAAAT
* * * *
10009497 TAATATTAAAATAATCTACACTAATTAAAGTTTAAGTGAGAAAT
1 TAATATTAAAATAATATACACTAATCAAAGTTTAAGTAAAAAAT
10009541 TAA
1 TAA
10009544 AAACAAAAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.33
Consensus pattern (44 bp):
TAATATTAAAATAATATACACTAATCAAAGTTTAAGTAAAAAAT
Found at i:10017106 original size:14 final size:15
Alignment explanation
Indices: 10017084--10017160 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
10017074 CAATCAAACA
10017084 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
10017098 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
10017113 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
10017133 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
10017147 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
10017161 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:10017125 original size:20 final size:20
Alignment explanation
Indices: 10017100--10017139 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10017090 AATATTTTCC
*
10017100 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
10017120 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
10017140 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:10017145 original size:34 final size:35
Alignment explanation
Indices: 10017088--10017154 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
10017078 CAAACACCAG
*
10017088 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
10017123 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
10017155 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:10018627 original size:40 final size:40
Alignment explanation
Indices: 10018567--10018706 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
10018557 AACACACCAG
* * *
10018567 TTTGGCACCCAGTGCCTCATCGGATAATTCAAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * *
10018607 TTTGACACCCAGTGTCTCATCGGCTAAACCGAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
* * * *
10018645 -TTGGCACCTAGTACCTCATCGAATTAATCCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGA-TAATCCGAAGTAATAA
* *
10018685 ATTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
10018707 ACTCAAAGTC
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
37 17 0.22
38 12 0.15
39 2 0.03
40 31 0.39
41 17 0.22
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAATAA
Found at i:10019675 original size:3 final size:3
Alignment explanation
Indices: 10019667--10019706 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
10019657 TTATTAGTTT
10019667 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10019707 TATATTTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10021020 original size:26 final size:26
Alignment explanation
Indices: 10020990--10021043 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
10020980 ATAAGCCACC
10020990 ACGTCCGGGTGTATTCAAAGCTTGAA
1 ACGTCCGGGTGTATTCAAAGCTTGAA
10021016 ACGTCCGGGTGTATTCAAAGCTTGAA
1 ACGTCCGGGTGTATTCAAAGCTTGAA
10021042 AC
1 AC
10021044 CTCTATCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
ACGTCCGGGTGTATTCAAAGCTTGAA
Found at i:10028238 original size:14 final size:14
Alignment explanation
Indices: 10028204--10028238 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10028194 CTACCATTTC
*
10028204 ACTATTATATTGTT
1 ACTATTTTATTGTT
10028218 ACTATTTTATTGTT
1 ACTATTTTATTGTT
*
10028232 ATTATTT
1 ACTATTT
10028239 GGATATTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63
Consensus pattern (14 bp):
ACTATTTTATTGTT
Found at i:10029788 original size:40 final size:40
Alignment explanation
Indices: 10029739--10029820 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
10029729 CTGGAATAAG
10029739 TATGTTTCCTCTCCGTTGACTGCAGAGGCCTAGGCTGGAT
1 TATGTTTCCTCTCCGTTGACTGCAGAGGCCTAGGCTGGAT
10029779 TATGTTTCCTCTCCGTTGACTGCAGAGGCCTAGGCTGGAT
1 TATGTTTCCTCTCCGTTGACTGCAGAGGCCTAGGCTGGAT
10029819 TA
1 TA
10029821 CAGAAGATTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.33
Consensus pattern (40 bp):
TATGTTTCCTCTCCGTTGACTGCAGAGGCCTAGGCTGGAT
Found at i:10030732 original size:60 final size:60
Alignment explanation
Indices: 10030629--10030769 Score: 180
Period size: 60 Copynumber: 2.4 Consensus size: 60
10030619 CACCTAAATT
* *
10030629 TGACATTTTTTCCTAATTTGGTATCTAAACTTTGTTTTGGCCCAATTCAGTACTTGAACG
1 TGACATTTTTTCCTAATTTGGTACCTAAACTTTGTTTTGGCCCAATTCAGTACCTGAACG
** *
10030689 TGACATATTTTT-CTAATTTGGTACCTAAA-TGTT-TTTTGAGCCCAATTTGGTACCTGAACT
1 TGACAT-TTTTTCCTAATTTGGTACCTAAACT-TTGTTTTG-GCCCAATTCAGTACCTGAACG
*
10030749 TGACATTTTTTCCTAGTTTGG
1 TGACATTTTTTCCTAATTTGG
10030770 CACGTAAGCT
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
59 11 0.15
60 55 0.77
61 5 0.07
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.45
Consensus pattern (60 bp):
TGACATTTTTTCCTAATTTGGTACCTAAACTTTGTTTTGGCCCAATTCAGTACCTGAACG
Found at i:10031261 original size:31 final size:31
Alignment explanation
Indices: 10031224--10031302 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
10031214 TGGACCCAAA
* *
10031224 AAATTTAAGTACCAACTTAAGAAAAAGTTTC
1 AAATTTAAGTACCAAATTAAGAAAAAGTGTC
*
10031255 AAATTTAGGTACCAAATTAAGAAAAAGTGTC
1 AAATTTAAGTACCAAATTAAGAAAAAGTGTC
* * *
10031286 AAGTTCAAATACCAAAT
1 AAATTTAAGTACCAAAT
10031303 ATTATATTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (31 bp):
AAATTTAAGTACCAAATTAAGAAAAAGTGTC
Found at i:10032156 original size:6 final size:6
Alignment explanation
Indices: 10032145--10032171 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10032135 ATATTTATCA
10032145 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
10032172 GATTAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:10034683 original size:21 final size:20
Alignment explanation
Indices: 10034659--10034807 Score: 113
Period size: 18 Copynumber: 7.7 Consensus size: 20
10034649 CATCTTGAAG
10034659 GAGAAGGAGGAGGAGAAGATA
1 GAGAAGGAGGAGGAGAAGA-A
* *
10034680 GAGAAGGAGAAGAAGAAGAA
1 GAGAAGGAGGAGGAGAAGAA
10034700 GA-AA-GAGGA-G-G-AG--
1 GAGAAGGAGGAGGAGAAGAA
*
10034713 GAGAAGGAGGAGAAGAAGAA
1 GAGAAGGAGGAGGAGAAGAA
10034733 -AG-AGGAGGAGGAGAAGAA
1 GAGAAGGAGGAGGAGAAGAA
*
10034751 GGAGGAGGAGGAGGAGGAGGAGAA
1 -GA-GA--AGGAGGAGGAGAAGAA
* *
10034775 CGAGGAGGAGGAGGGGAAG--
1 -GAGAAGGAGGAGGAGAAGAA
10034794 GAGAAGGAGGAGGA
1 GAGAAGGAGGAGGA
10034808 AGGAAAGGAG
Statistics
Matches: 102, Mismatches: 13, Indels: 29
0.71 0.09 0.20
Matches are distributed among these distances:
13 2 0.02
14 2 0.02
15 7 0.07
16 1 0.01
17 1 0.01
18 33 0.32
19 4 0.04
20 4 0.04
21 30 0.29
23 1 0.01
24 17 0.17
ACGTcount: A:0.46, C:0.01, G:0.52, T:0.01
Consensus pattern (20 bp):
GAGAAGGAGGAGGAGAAGAA
Found at i:10034710 original size:3 final size:3
Alignment explanation
Indices: 10034704--10034860 Score: 111
Period size: 3 Copynumber: 52.3 Consensus size: 3
10034694 GAAGAAGAAA
* * * * * * *
10034704 GAG GAG GAG GAG AAG GAG GAG AAG AAG AAA GAG GAG GAG GAG AAG AAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
* *
10034752 GAG GAG GAG GAG GAG GAG GAG AAC GAG GAG GAG GAG G-G GAAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG G-AG GAG
* * * * * * *
10034797 AAG GAG GAG GAAG GA- AAG GAG GAG AAG AAA GAG GAG GAA AAG GAG
1 GAG GAG GAG G-AG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
* * *
10034842 GAG AAG GAA AAG GAG GAG G
1 GAG GAG GAG GAG GAG GAG G
10034861 TTGAAGATGA
Statistics
Matches: 120, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
2 3 0.03
3 112 0.93
4 5 0.04
ACGTcount: A:0.45, C:0.01, G:0.54, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:10034755 original size:15 final size:15
Alignment explanation
Indices: 10034660--10034860 Score: 141
Period size: 15 Copynumber: 13.6 Consensus size: 15
10034650 ATCTTGAAGG
10034660 AGAAGGAGGAGGAGA
1 AGAAGGAGGAGGAGA
*
10034675 AGATA-GAGAAGGAGA
1 AGA-AGGAGGAGGAGA
* *
10034690 AGAA-GAAGAAGA-A
1 AGAAGGAGGAGGAGA
10034703 AG-AGGAGGAGGAGA
1 AGAAGGAGGAGGAGA
* * *
10034717 AGGAGGAGAAGAAGA
1 AGAAGGAGGAGGAGA
10034732 A-AGAGGAGGAGGAGA
1 AGA-AGGAGGAGGAGA
10034747 AGAAGGAGGAGGAG-
1 AGAAGGAGGAGGAGA
10034761 -G-AGGAGGAGGAGA
1 AGAAGGAGGAGGAGA
*
10034774 ACG-AGGAGGAGGAGG
1 A-GAAGGAGGAGGAGA
* *
10034789 GGAAGGAGAAGGAGGA
1 AGAAGGAGGAGGA-GA
*
10034805 GGAAGGAAAGGAGGAGA
1 AGAAGG--AGGAGGAGA
* *
10034822 AGAAAGAGGAGGAAA
1 AGAAGGAGGAGGAGA
* * *
10034837 AGGAGGAGAAGGAAA
1 AGAAGGAGGAGGAGA
*
10034852 AGGAGGAGG
1 AGAAGGAGG
10034861 TTGAAGATGA
Statistics
Matches: 150, Mismatches: 23, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
12 12 0.08
13 10 0.07
14 10 0.07
15 97 0.65
16 9 0.06
17 6 0.04
18 6 0.04
ACGTcount: A:0.48, C:0.00, G:0.51, T:0.00
Consensus pattern (15 bp):
AGAAGGAGGAGGAGA
Found at i:10034761 original size:24 final size:24
Alignment explanation
Indices: 10034657--10034860 Score: 171
Period size: 24 Copynumber: 8.4 Consensus size: 24
10034647 ACCATCTTGA
*
10034657 AGGAGAAGGAGGAGGAGAAGATA-G
1 AGGAGGAGGAGGAGGAGAAGA-AGG
* * * * *
10034681 AGAAGGAGAAGAAGAAGAAGAAAG
1 AGGAGGAGGAGGAGGAGAAGAAGG
* * *
10034705 AGGAGGAGGAGAAGGAGGAGAAGA
1 AGGAGGAGGAGGAGGAGAAGAAGG
* *
10034729 AGAAAGAGGAGGAGGAGAAGAAGG
1 AGGAGGAGGAGGAGGAGAAGAAGG
* *
10034753 AGGAGGAGGAGGAGGAGGAGAACG
1 AGGAGGAGGAGGAGGAGAAGAAGG
*
10034777 AGGAGGAGGAGG-GGAAGGAGAAGG
1 AGGAGGAGGAGGAGG-AGAAGAAGG
*
10034801 AGGAGGAAGGAAAGGAGGAGAAGAAAG
1 AGGAGG-AGG--AGGAGGAGAAGAAGG
** *
10034828 AGGAGGAAAAGGAGGAGAAGGAA-A
1 AGGAGGAGGAGGAGGAGAA-GAAGG
10034852 AGGAGGAGG
1 AGGAGGAGG
10034861 TTGAAGATGA
Statistics
Matches: 145, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
23 3 0.02
24 117 0.81
25 6 0.04
26 1 0.01
27 16 0.11
28 2 0.01
ACGTcount: A:0.48, C:0.00, G:0.51, T:0.00
Consensus pattern (24 bp):
AGGAGGAGGAGGAGGAGAAGAAGG
Found at i:10034815 original size:21 final size:20
Alignment explanation
Indices: 10034655--10034817 Score: 91
Period size: 21 Copynumber: 8.3 Consensus size: 20
10034645 CCACCATCTT
*
10034655 GAAGGAGAAGGAGGAGGAGAA
1 GAAGGAGAAGGAGGAGGA-AG
*
10034676 GATA-GAGAAGGA-GAAGAA-
1 GA-AGGAGAAGGAGGAGGAAG
*
10034694 GAAGAAGAA--A-GAGG-AG
1 GAAGGAGAAGGAGGAGGAAG
10034710 G-AGGAGAAGGAGGA-GAA-
1 GAAGGAGAAGGAGGAGGAAG
* *
10034727 GAA-GAAAGAGGAGGAGGAGAA
1 GAAGGAGA-AGGAGGAGGA-AG
*
10034748 GAAGGAGGAGGAGGAGG-AG
1 GAAGGAGAAGGAGGAGGAAG
*
10034767 G-AGGAGAACGAGGAGGAGGAGGG
1 GAAGGAG-A--AGGAGGAGGA-AG
10034790 GAAGGAGAAGGAGGAGGAAG
1 GAAGGAGAAGGAGGAGGAAG
10034810 GAAAGGAG
1 G-AAGGAG
10034818 GAGAAGAAAG
Statistics
Matches: 111, Mismatches: 11, Indels: 40
0.69 0.07 0.25
Matches are distributed among these distances:
15 7 0.06
16 5 0.05
17 7 0.06
18 22 0.20
19 5 0.05
20 7 0.06
21 47 0.42
22 3 0.03
23 3 0.03
24 5 0.05
ACGTcount: A:0.47, C:0.01, G:0.52, T:0.01
Consensus pattern (20 bp):
GAAGGAGAAGGAGGAGGAAG
Found at i:10038774 original size:94 final size:97
Alignment explanation
Indices: 10038669--10038853 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 97
10038659 TCAAAAGTCA
** * *
10038669 TTTTTGATGCATTTTGGCAGATC-AAGTACCTAATTGAGTG-GAAAAA-AAAAAGCAGA-GGCTT
1 TTTTTGATGCATTTTGAAAG-TCTAAGTACCCAATTGAGTGCAAAAAATAAAAAGCA-ATGGCTT
*
10038730 AATTGC-TTTTTTTTGAAAAAGTTTGAGGGCTTT
64 AATTACTTTTTTTTTGAAAAAGTTTGAGGGCTTT
*
10038763 TTTTTTATGCATTTTGAAAGTCTAAGTACCCAATTGAGTGCAAAAAATAAAAAGCAATGGCTTAA
1 TTTTTGATGCATTTTGAAAGTCTAAGTACCCAATTGAGTGCAAAAAATAAAAAGCAATGGCTTAA
10038828 TTACTTTTTTTTTTTGAAAAAGTTTG
66 TTAC--TTTTTTTTTGAAAAAGTTTG
10038854 TAGGTTTTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
93 2 0.03
94 33 0.42
95 6 0.08
96 18 0.23
99 19 0.24
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (97 bp):
TTTTTGATGCATTTTGAAAGTCTAAGTACCCAATTGAGTGCAAAAAATAAAAAGCAATGGCTTAA
TTACTTTTTTTTTGAAAAAGTTTGAGGGCTTT
Found at i:10039450 original size:29 final size:29
Alignment explanation
Indices: 10039418--10039473 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
10039408 TACCTAAATA
10039418 ATATA-AAAAAATAATTAATTACGAAAAAG
1 ATATAGAAAAAA-AATTAATTACGAAAAAG
* *
10039447 ATATAGAAAACAAGTTAATTACGAAAA
1 ATATAGAAAAAAAATTAATTACGAAAA
10039474 TAGGCATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.62, C:0.05, G:0.09, T:0.23
Consensus pattern (29 bp):
ATATAGAAAAAAAATTAATTACGAAAAAG
Found at i:10039693 original size:27 final size:28
Alignment explanation
Indices: 10039638--10039701 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
10039628 AATGGATAAA
*
10039638 TTCTTCATAAGCCCCCTTATTTATTATT
1 TTCTTCATAAGACCCCTTATTTATTATT
* *
10039666 TTCTTCATAA-ACCCTTTTTTTATTATT
1 TTCTTCATAAGACCCCTTATTTATTATT
*
10039693 TGCTTCATA
1 TTCTTCATA
10039702 TATAATTCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.69
28 10 0.31
ACGTcount: A:0.22, C:0.22, G:0.03, T:0.53
Consensus pattern (28 bp):
TTCTTCATAAGACCCCTTATTTATTATT
Found at i:10056070 original size:15 final size:15
Alignment explanation
Indices: 10056052--10056080 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10056042 TTGATGTTTG
10056052 GTATCATTTTGTTCA
1 GTATCATTTTGTTCA
10056067 GTATCATTTTGTTC
1 GTATCATTTTGTTC
10056081 GTGATATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.55
Consensus pattern (15 bp):
GTATCATTTTGTTCA
Found at i:10069666 original size:14 final size:12
Alignment explanation
Indices: 10069648--10069704 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 12
10069638 TTTGCTTTCA
10069648 AAATAAAAGAAAT
1 AAATAAAA-AAAT
*
10069661 AAAATAAGAAAAT
1 -AAATAAAAAAAT
10069674 AAATAAATAAAAAT
1 AAAT-AA-AAAAAT
* *
10069688 AAATAAATAAAC
1 AAATAAAAAAAT
10069700 AAATA
1 AAATA
10069705 GGCCGAGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
12 13 0.35
13 8 0.22
14 16 0.43
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.18
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:10069703 original size:22 final size:22
Alignment explanation
Indices: 10069647--10069704 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
10069637 GTTTGCTTTC
*
10069647 AAAATAAAAGAAAT-AAAATAAG
1 AAAAT-AAACAAATAAAAATAAG
*
10069669 AAAATAAATAAATAAAAATAA-
1 AAAATAAACAAATAAAAATAAG
10069690 ATAAATAAACAAATA
1 A-AAATAAACAAATA
10069705 GGCCGAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAATAAACAAATAAAAATAAG
Found at i:10070137 original size:17 final size:17
Alignment explanation
Indices: 10070115--10070165 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
10070105 TTTGTAATTG
*
10070115 TTATTTGGACTTTTATT
1 TTATTTGGATTTTTATT
**
10070132 TTATTTTTATTTTTATT
1 TTATTTGGATTTTTATT
*
10070149 TT-TTTGGGTTTTTATT
1 TTATTTGGATTTTTATT
10070165 T
1 T
10070166 GGTTTATTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.14, C:0.02, G:0.10, T:0.75
Consensus pattern (17 bp):
TTATTTGGATTTTTATT
Found at i:10075780 original size:43 final size:43
Alignment explanation
Indices: 10075719--10076029 Score: 304
Period size: 43 Copynumber: 7.3 Consensus size: 43
10075709 TTTTAAAAAT
* *
10075719 AAACGCCGCTATAGACCATGACCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCCCAC
* * *
10075762 AAACGCCGCAATAGACCATGACCTTTAGCGGCGC-TTCCCCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCCCAC
* **
10075804 AAATGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCCCAC
**
10075847 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCCCAC
* * * * *
10075890 AAACACCACTAAAGACCATTACCTTTAGCGGCGCTTCTCCCAT
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCCCAC
* * ** * * * ** **
10075933 AAATGCCGTTATAGGTCATGACTTTTAACAACGCTTTTTCGTAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGC-TTTTCCCAC
** * * *
10075977 AAACGCCATTATAGA--ATTGGCCTTTAGCAGCGCTTTTCACAC
1 AAACGCCGCTATAGACCATT-ACCTTTAGCGGCGCTTTTCCCAC
10076019 AAACGCCGCTA
1 AAACGCCGCTA
10076030 AAAACATATC
Statistics
Matches: 220, Mismatches: 45, Indels: 7
0.81 0.17 0.03
Matches are distributed among these distances:
42 56 0.25
43 147 0.67
44 17 0.08
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCCCAC
Found at i:10075871 original size:85 final size:86
Alignment explanation
Indices: 10075719--10075925 Score: 290
Period size: 85 Copynumber: 2.4 Consensus size: 86
10075709 TTTTAAAAAT
* * *
10075719 AAACGCCGCTATAGACCATGACCTTTAGTGGCGCTTTTCCCACAAACGCCGCAATAGACCATGAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTACCACAAACGCCGCAATAGACCATGAC
*
10075784 CTTTAGCGGCGC-TTCCCCAC
66 CTTTAGCGGCGCTTTCACCAC
* * * *
10075804 AAATGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGACCATTAC
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTACCACAAACGCCGCAATAGACCATGAC
* *
10075869 CTTTAGCGGCGCTTTTATCAC
66 CTTTAGCGGCGCTTTCACCAC
* * *
10075890 AAACACCACTAAAGACCATTACCTTTAGCGGCGCTT
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTT
10075926 CTCCCATAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 70 0.65
86 37 0.35
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (86 bp):
AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTACCACAAACGCCGCAATAGACCATGAC
CTTTAGCGGCGCTTTCACCAC
Found at i:10075881 original size:128 final size:129
Alignment explanation
Indices: 10075719--10076031 Score: 368
Period size: 128 Copynumber: 2.4 Consensus size: 129
10075709 TTTTAAAAAT
* * *
10075719 AAACGCCGCTATAGACCATGACCTTTAGTGGCGCTTTTCCCACAAACGCCGC-AATAGACCATGA
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAA-AGACCATGA
* * **
10075783 CCTTTAGCGGCGCTTC-CCCACAAATGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTATC-A
65 CCTTTAGCGGCGCTTCTCCCACAAATGCCGCTATAGACCATGACCTTTAACAACGCTTTT-TCGA
10075846 C
129 C
* * *
10075847 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTT-ATCACAAACACCACTAAAGACCATTA
1 AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCA-CACAAACGCCGCTAAAGACCATGA
* * ** *
10075911 CCTTTAGCGGCGCTTCTCCCATAAATGCCGTTATAGGTCATGACTTTTAACAACGCTTTTTCGTA
65 CCTTTAGCGGCGCTTCTCCCACAAATGCCGCTATAGACCATGACCTTTAACAACGCTTTTTCG-A
10075976 C
129 C
** * *
10075977 AAACGCCATTATAGA--ATTGGCCTTTAGCAGCGCTTTTCACACAAACGCCGCTAAA
1 AAACGCCGCTATAGACCATT-ACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAAA
10076032 AACATATCTT
Statistics
Matches: 157, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
128 75 0.48
129 66 0.42
130 16 0.10
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (129 bp):
AAACGCCGCTATAGACCATTACCTTTAGCGGCGCTTTTCACACAAACGCCGCTAAAGACCATGAC
CTTTAGCGGCGCTTCTCCCACAAATGCCGCTATAGACCATGACCTTTAACAACGCTTTTTCGAC
Found at i:10076353 original size:43 final size:43
Alignment explanation
Indices: 10076305--10076395 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
10076295 ACATATGCAA
** * * *
10076305 GGTAATAAATTATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
10076348 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
10076391 -GTAAT
1 GGTAAT
10076396 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:10078329 original size:91 final size:91
Alignment explanation
Indices: 10078174--10078356 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
10078164 TAACTTGCAA
10078174 AAATATGAACTTCAATTAAATTCTTTGCTTTTAAGAGATTAGTGTGTCGTTAAGCTAGTTATGAA
1 AAATATGAACTTCAATTAAATTCTTTGCTTTTAAGAGATTAGTGTGTCGTTAAGCTAGTTATGAA
10078239 GCTTGCTAAGGAATGTGATTTTGAGG
66 GCTTGCTAAGGAATGTGATTTTGAGG
10078265 AAATATGAACTTCAATTAAATTCTTTGCTTTTAAGAGATTAGTGTGTCGTTAAGCTAGTTATGAA
1 AAATATGAACTTCAATTAAATTCTTTGCTTTTAAGAGATTAGTGTGTCGTTAAGCTAGTTATGAA
10078330 GCTTGCTAAGGAATGTGATTTTGAGG
66 GCTTGCTAAGGAATGTGATTTTGAGG
10078356 A
1 A
10078357 GATTAAGGTT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (91 bp):
AAATATGAACTTCAATTAAATTCTTTGCTTTTAAGAGATTAGTGTGTCGTTAAGCTAGTTATGAA
GCTTGCTAAGGAATGTGATTTTGAGG
Found at i:10081011 original size:83 final size:83
Alignment explanation
Indices: 10080892--10081154 Score: 311
Period size: 83 Copynumber: 3.2 Consensus size: 83
10080882 CGTTTACACA
* ** *
10080892 AAAACGCCACTAAT-TTT-A--CAACAATGAAATAACGCCGTTTTGTTAAATTTTTAATTTATTT
1 AAAACGCCACTAATATTTAATTCATCAATGAAATGGCGCCGTTTTGTTAAATTTTTAATATATTT
* *
10080953 TTTGTGGCATTTTTATAG
66 TTTGCGGCATTTTTATAC
* *
10080971 AAAACGCCACTAATATTTAATTCATCAATGAAATGGCGCCGTTTTATTAAATTCTTAATATATTT
1 AAAACGCCACTAATATTTAATTCATCAATGAAATGGCGCCGTTTTGTTAAATTTTTAATATATTT
* * *
10081036 TTTGCAGCGTTTGTATAC
66 TTTGCGGCATTTTTATAC
* * * * * *
10081054 AAAACGCCACTAATATTTAATTCGTCAATGAAACGGTGCCGTTTGGTTAAATTTTAAATGTATTT
1 AAAACGCCACTAATATTTAATTCATCAATGAAATGGCGCCGTTTTGTTAAATTTTTAATATATTT
10081119 TTTGCGGCATTTTT-TAC
66 TTTGCGGCATTTTTATAC
* *
10081136 CAAACGCCGCTAATGATTT
1 AAAACGCCACTAAT-ATTT
10081155 CACTTTTAAA
Statistics
Matches: 155, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
79 14 0.09
80 3 0.02
81 1 0.01
82 15 0.10
83 122 0.79
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (83 bp):
AAAACGCCACTAATATTTAATTCATCAATGAAATGGCGCCGTTTTGTTAAATTTTTAATATATTT
TTTGCGGCATTTTTATAC
Found at i:10081296 original size:14 final size:14
Alignment explanation
Indices: 10081277--10081304 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10081267 ACATCATTAT
10081277 TAATATTATTTAAA
1 TAATATTATTTAAA
10081291 TAATATTATTTAAA
1 TAATATTATTTAAA
10081305 ATTTTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATTATTTAAA
Found at i:10081419 original size:17 final size:17
Alignment explanation
Indices: 10081374--10081420 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
10081364 CTTTTACAAT
*
10081374 TATATAATATATATCCA
1 TATAAAATATATATCCA
*
10081391 TATAAAAAATATATCCA
1 TATAAAATATATATCCA
* *
10081408 TATCAATTATATA
1 TATAAAATATATA
10081421 AATCTTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAAAATATATATCCA
Found at i:10082092 original size:7 final size:7
Alignment explanation
Indices: 10082080--10082219 Score: 61
Period size: 7 Copynumber: 19.7 Consensus size: 7
10082070 CTAGTTAATC
10082080 TAAACCA
1 TAAACCA
10082087 TAAACCA
1 TAAACCA
*
10082094 TAAACCC
1 TAAACCA
*
10082101 TTAACACA
1 TAAAC-CA
*
10082109 T-AACCTC
1 TAAACC-A
*
10082116 TAAACCT
1 TAAACCA
*
10082123 TAAACCC
1 TAAACCA
* **
10082130 CAAACTT
1 TAAACCA
*
10082137 TTAACCA
1 TAAACCA
*
10082144 TAAATCA
1 TAAACCA
* *
10082151 TAACCCC
1 TAAACCA
10082158 TAAACCCA
1 TAAA-CCA
*
10082166 TAATCCA
1 TAAACCA
*
10082173 TAAACCT
1 TAAACCA
10082180 TAAACTC-
1 TAAAC-CA
10082187 TAAACCA
1 TAAACCA
* *
10082194 TATACCC
1 TAAACCA
10082201 TAAACCCA
1 TAAA-CCA
*
10082209 AAAACC-
1 TAAACCA
10082215 TAAAC
1 TAAAC
10082220 TATAGTGATA
Statistics
Matches: 97, Mismatches: 29, Indels: 15
0.69 0.21 0.11
Matches are distributed among these distances:
6 6 0.06
7 74 0.76
8 17 0.18
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:10082099 original size:14 final size:14
Alignment explanation
Indices: 10082080--10082219 Score: 86
Period size: 14 Copynumber: 9.9 Consensus size: 14
10082070 CTAGTTAATC
*
10082080 TAAACCATAAACCA
1 TAAACCCTAAACCA
*
10082094 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
*
10082109 T-AACCTCTAAACCT
1 TAAACC-CTAAACCA
* **
10082123 TAAACCCCAAACTT
1 TAAACCCTAAACCA
* * *
10082137 TTAACCATAAATCA
1 TAAACCCTAAACCA
*
10082151 TAACCCCTAAACCCA
1 TAAACCCTAAA-CCA
* * *
10082166 TAATCCATAAACCT
1 TAAACCCTAAACCA
*
10082180 TAAACTCTAAACCA
1 TAAACCCTAAACCA
*
10082194 TATACCCTAAACCCA
1 TAAACCCTAAA-CCA
*
10082209 -AAAACCTAAAC
1 TAAACCCTAAAC
10082220 TATAGTGATA
Statistics
Matches: 94, Mismatches: 27, Indels: 11
0.71 0.20 0.08
Matches are distributed among these distances:
13 1 0.01
14 67 0.71
15 26 0.28
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:10082141 original size:36 final size:35
Alignment explanation
Indices: 10082078--10082146 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
10082068 TACTAGTTAA
*
10082078 TCTAAACCATAAACCATAAACCCTTAACACATAACC
1 TCTAAACCATAAACCACAAACCCTTAAC-CATAACC
* * **
10082114 TCTAAACCTTAAACCCCAAACTTTTAACCATAA
1 TCTAAACCATAAACCACAAACCCTTAACCATAA
10082147 ATCATAACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
35 5 0.18
36 23 0.82
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (35 bp):
TCTAAACCATAAACCACAAACCCTTAACCATAACC
Found at i:10082446 original size:41 final size:41
Alignment explanation
Indices: 10082400--10082683 Score: 451
Period size: 41 Copynumber: 6.9 Consensus size: 41
10082390 ATTTTAAATT
* *
10082400 CCTGAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
*
10082441 CCTGAGCATTAGCGGCGCTTCCACAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
* * *
10082482 CATGAGCATTAGCGGCGCTTCCTTACAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
**
10082523 CCTGAGCATTAGCGGCGCTTTATCAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
*
10082564 CATGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
* **
10082605 CTTGAGCATTAGCGGCGCTTTATCAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
*
10082646 CCTAAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAA
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAA
10082684 TGCCCCGAAA
Statistics
Matches: 221, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 221 1.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.19
Consensus pattern (41 bp):
CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
Found at i:10086312 original size:5 final size:5
Alignment explanation
Indices: 10086304--10086354 Score: 75
Period size: 5 Copynumber: 9.8 Consensus size: 5
10086294 TAGAGTGTGC
*
10086304 AGGAG AGGAG AGGAG AGGAG AGGAG AGGAG AGGAG AGCGAC AGGAG TAGGA
1 AGGAG AGGAG AGGAG AGGAG AGGAG AGGAG AGGAG AG-GAG AGGAG -AGGA
10086355 AGCGGCTAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
5 34 0.81
6 8 0.19
ACGTcount: A:0.39, C:0.04, G:0.55, T:0.02
Consensus pattern (5 bp):
AGGAG
Found at i:10093650 original size:67 final size:67
Alignment explanation
Indices: 10093542--10093676 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
10093532 AGAAATTTTC
*
10093542 AACTGATTCTATAGTGCTTGTTGCATTATTAATAGGATTGAGCTCATAAGCTCACGACAATGGAA
1 AACTGATTCTATAGTACTTGTTGCATTATTAATAGGATTGAGCTCATAAGCTCACGACAATGGAA
10093607 GG
66 GG
*
10093609 AACTGATTCTATAGTACTTGTTGCATTATTAGTAGGATTGAGCTCATAAGCTCACGACAATGGAA
1 AACTGATTCTATAGTACTTGTTGCATTATTAATAGGATTGAGCTCATAAGCTCACGACAATGGAA
10093674 GG
66 GG
10093676 A
1 A
10093677 TGAGTCAGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (67 bp):
AACTGATTCTATAGTACTTGTTGCATTATTAATAGGATTGAGCTCATAAGCTCACGACAATGGAA
GG
Found at i:10093977 original size:3 final size:3
Alignment explanation
Indices: 10093969--10094031 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
10093959 TCTAGTCAAG
10093969 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10094017 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
10094032 GCAAAGTCAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10101757 original size:15 final size:14
Alignment explanation
Indices: 10101736--10101771 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
10101726 ATAATCCTTA
*
10101736 ATAATTATCTTAAT
1 ATAATTATCCTAAT
10101750 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
10101765 ATAATTA
1 ATAATTA
10101772 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:10104034 original size:17 final size:17
Alignment explanation
Indices: 10103978--10104035 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 17
10103968 ATACGGGGTC
10103978 ATACCAATCGGTCCCTT
1 ATACCAATCGGTCCCTT
* *
10103995 ATACGCAGTCCGATAGGCCCTT
1 ATAC-CAAT-CG---GTCCCTT
10104017 ATACCAATCGGTCCCTT
1 ATACCAATCGGTCCCTT
10104034 AT
1 AT
10104036 CCTTTCAGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
17 12 0.38
18 3 0.09
19 2 0.06
20 2 0.06
21 3 0.09
22 10 0.31
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (17 bp):
ATACCAATCGGTCCCTT
Found at i:10109901 original size:15 final size:14
Alignment explanation
Indices: 10109880--10109915 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
10109870 ATAATCCTTA
*
10109880 ATAATTATCTTAAT
1 ATAATTATCCTAAT
10109894 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
10109909 ATAATTA
1 ATAATTA
10109916 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:10112823 original size:13 final size:13
Alignment explanation
Indices: 10112805--10112848 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
10112795 ATTATTATAT
10112805 TTACCATCATAAC
1 TTACCATCATAAC
10112818 TTACCATCATAAC
1 TTACCATCATAAC
10112831 TTACCATACA-AAC
1 TTACCAT-CATAAC
10112844 TTACC
1 TTACC
10112849 TGACCAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 28 0.93
14 2 0.07
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.30
Consensus pattern (13 bp):
TTACCATCATAAC
Found at i:10113545 original size:48 final size:48
Alignment explanation
Indices: 10113490--10113587 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
10113480 AAACTCTCGC
10113490 TTTCTTTCCACTTTTGTTTCTTTTAATTAATGTTTTGATTTCATTATT
1 TTTCTTTCCACTTTTGTTTCTTTTAATTAATGTTTTGATTTCATTATT
10113538 TTTCTTTCCACTTTTGTTTCTTTTAATTAATGTTTTGATTTCATTATT
1 TTTCTTTCCACTTTTGTTTCTTTTAATTAATGTTTTGATTTCATTATT
10113586 TT
1 TT
10113588 AACTTTAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.65
Consensus pattern (48 bp):
TTTCTTTCCACTTTTGTTTCTTTTAATTAATGTTTTGATTTCATTATT
Found at i:10122853 original size:21 final size:21
Alignment explanation
Indices: 10122827--10122867 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10122817 AGACGAGCAA
* *
10122827 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
10122848 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
10122868 TTGAACAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:10137769 original size:27 final size:27
Alignment explanation
Indices: 10137739--10137808 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
10137729 AATAATCAAT
*
10137739 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
10137766 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAAC-AATTCAAAACATATA
*
10137794 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
10137809 CTAAAATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:10139793 original size:57 final size:58
Alignment explanation
Indices: 10139680--10139817 Score: 217
Period size: 57 Copynumber: 2.4 Consensus size: 58
10139670 ATAAACAAAA
****
10139680 AAATTTGACAATGTTATAAATTTTTTTTATTTCTATTTTTATAATTTTTTTAAATTAT
1 AAATTTGACAATGTTATAAATAAAATTTATTTCTATTTTTATAATTTTTTTAAATTAT
10139738 AAATTTGACAATGTTATAAA-AAAATTTATTTCTATTTTTTATAA-TTTTTTAAATTAT
1 AAATTTGACAATGTTATAAATAAAATTTATTTCTA-TTTTTATAATTTTTTTAAATTAT
10139795 AAATTTGACAATGTTATAAATAA
1 AAATTTGACAATGTTATAAATAA
10139818 TGTTTAACTG
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
57 43 0.58
58 31 0.42
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (58 bp):
AAATTTGACAATGTTATAAATAAAATTTATTTCTATTTTTATAATTTTTTTAAATTAT
Found at i:10140591 original size:14 final size:14
Alignment explanation
Indices: 10140572--10140599 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10140562 TCTTTAAAAA
10140572 GAATTAACTTATTT
1 GAATTAACTTATTT
10140586 GAATTAACTTATTT
1 GAATTAACTTATTT
10140600 TTAAAGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
GAATTAACTTATTT
Found at i:10144560 original size:29 final size:28
Alignment explanation
Indices: 10144515--10144580 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
10144505 GGCGTGGTTT
* *
10144515 TTTAAATAATTAAAAAATTATATAAAATTA
1 TTTAAA-AATTAAAAAAATAT-TAAAAATA
*
10144545 TTTAAAAATTATAAAAATATTAAAAATA
1 TTTAAAAATTAAAAAAATATTAAAAATA
*
10144573 ATTAAAAA
1 TTTAAAAA
10144581 CAACATCAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 14 0.44
29 12 0.38
30 6 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (28 bp):
TTTAAAAATTAAAAAAATATTAAAAATA
Found at i:10144576 original size:21 final size:19
Alignment explanation
Indices: 10144518--10144570 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 19
10144508 GTGGTTTTTT
10144518 AAATAATTAAAAAATTATATA
1 AAAT-ATTAAAAAATTATA-A
*
10144539 AAATTATTTAAAAATTATAA
1 AAA-TATTAAAAAATTATAA
10144559 AAATATTAAAAA
1 AAATATTAAAAA
10144571 TAATTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 8 0.28
20 4 0.14
21 16 0.55
22 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATATTAAAAAATTATAA
Found at i:10144578 original size:19 final size:20
Alignment explanation
Indices: 10144527--10144580 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
10144517 TAAATAATTA
*
10144527 AAAAATTATATAAAATTATTT
1 AAAAATTAT-TAAAAATATTT
10144548 AAAAATTA-TAAAAATA-TT
1 AAAAATTATTAAAAATATTT
*
10144566 AAAAATAATTAAAAA
1 AAAAATTATTAAAAA
10144581 CAACATCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 9 0.30
19 13 0.43
21 8 0.27
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTATTAAAAATATTT
Found at i:10144580 original size:11 final size:11
Alignment explanation
Indices: 10144518--10144580 Score: 55
Period size: 11 Copynumber: 6.2 Consensus size: 11
10144508 GTGGTTTTTT
*
10144518 AAATAATTAAA
1 AAATTATTAAA
*
10144529 AAATTA-TATA
1 AAATTATTAAA
*
10144539 AAATTATTTAA
1 AAATTATTAAA
10144550 AAATTA-T-AA
1 AAATTATTAAA
10144559 AAA-TATT-AA
1 AAATTATTAAA
*
10144568 AAATAATTAAA
1 AAATTATTAAA
10144579 AA
1 AA
10144581 CAACATCAGA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.05
9 11 0.26
10 13 0.30
11 17 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATTATTAAA
Found at i:10144939 original size:19 final size:18
Alignment explanation
Indices: 10144912--10144980 Score: 77
Period size: 19 Copynumber: 3.8 Consensus size: 18
10144902 ATTTTTCTAT
*
10144912 AAAATATTATTAAAAATAA
1 AAAAAATTATTAAAAAT-A
10144931 AAAAAATTA-TAAAAATA
1 AAAAAATTATTAAAAATA
* *
10144948 AAAGAATTATCAAATAATA
1 AAAAAATTATTAAA-AATA
*
10144967 TAAAAATTATTAAA
1 AAAAAATTATTAAA
10144981 TGTTAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.21
18 10 0.24
19 23 0.55
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (18 bp):
AAAAAATTATTAAAAATA
Found at i:10145084 original size:10 final size:10
Alignment explanation
Indices: 10145036--10145184 Score: 58
Period size: 10 Copynumber: 15.1 Consensus size: 10
10145026 TTTTATAAAT
10145036 ATTATAAAAA
1 ATTATAAAAA
* *
10145046 A-TCTAATAA
1 ATTATAAAAA
* *
10145055 ATTCTAATAA
1 ATTATAAAAA
10145065 ATTATAAAAAA
1 ATTAT-AAAAA
10145076 ATTAT-AAAA
1 ATTATAAAAA
* * *
10145085 GTAATAAAAC
1 ATTATAAAAA
*
10145095 ATT-TAAAAT
1 ATTATAAAAA
*
10145104 TTTATAAAAA
1 ATTATAAAAA
* *
10145114 CA-TAT-TAAG
1 -ATTATAAAAA
*
10145123 ATTCTATAAAA
1 ATTATA-AAAA
*
10145134 ATCATAAAAA
1 ATTATAAAAA
*
10145144 ATTTTAAAAA
1 ATTATAAAAA
* *
10145154 A-TACATTAAA
1 ATTATA-AAAA
*
10145164 ATTATATAAA
1 ATTATAAAAA
*
10145174 CTTATAAAAA
1 ATTATAAAAA
10145184 A
1 A
10145185 ATCATAAAAC
Statistics
Matches: 100, Mismatches: 29, Indels: 20
0.67 0.19 0.13
Matches are distributed among these distances:
8 1 0.01
9 27 0.27
10 54 0.54
11 18 0.18
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.33
Consensus pattern (10 bp):
ATTATAAAAA
Found at i:10145130 original size:21 final size:21
Alignment explanation
Indices: 10145090--10145173 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 21
10145080 TAAAAGTAAT
*
10145090 AAAACAT-TTAAAATTTTATA
1 AAAACATATTAAAATTCTATA
*
10145110 AAAACATATTAAGATTCTATA
1 AAAACATATTAAAATTCTATA
* *
10145131 AAAATCATA-AAAAATTTTA-A
1 AAAA-CATATTAAAATTCTATA
* * *
10145151 AAAATACATTAAAATTATATA
1 AAAACATATTAAAATTCTATA
10145172 AA
1 AA
10145174 CTTATAAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
19 2 0.04
20 20 0.39
21 25 0.49
22 4 0.08
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (21 bp):
AAAACATATTAAAATTCTATA
Found at i:10145645 original size:18 final size:18
Alignment explanation
Indices: 10145589--10145645 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 18
10145579 GGTTTTTATG
10145589 GTTTTTTTAAGTTTTATAA
1 GTTTTTTTAAG-TTTATAA
****
10145608 GTTTTTTTGCCATTAT--
1 GTTTTTTTAAGTTTATAA
10145624 GTTTTTTTAAGTTTATAA
1 GTTTTTTTAAGTTTATAA
10145642 GTTT
1 GTTT
10145646 ACATGAATTT
Statistics
Matches: 28, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
16 12 0.43
18 8 0.29
19 8 0.29
ACGTcount: A:0.21, C:0.04, G:0.12, T:0.63
Consensus pattern (18 bp):
GTTTTTTTAAGTTTATAA
Found at i:10145752 original size:9 final size:9
Alignment explanation
Indices: 10145740--10145788 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
10145730 TTAAATAAGT
10145740 TTTTATTAA
1 TTTTATTAA
10145749 TTTTATTAA
1 TTTTATTAA
10145758 TTTT-TATAA
1 TTTTAT-TAA
10145767 -TTTATTAGA
1 TTTTATTA-A
*
10145776 TTTTATTTA
1 TTTTATTAA
10145785 TTTT
1 TTTT
10145789 TATAATATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 6 0.17
9 23 0.66
10 6 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (9 bp):
TTTTATTAA
Found at i:10145780 original size:17 final size:18
Alignment explanation
Indices: 10145707--10145818 Score: 63
Period size: 17 Copynumber: 6.1 Consensus size: 18
10145697 AAGAATTCTA
10145707 ATAATTTT-TTAA-TTTT
1 ATAATTTTATTAATTTTT
* *
10145723 AAATATTTTAAATAAGTTTTT
1 ATA-ATTTT-ATTAA-TTTTT
10145744 ATTAATTTTATTAATTTTT
1 A-TAATTTTATTAATTTTT
10145763 ATAA-TTTATTAGATTTTAT
1 ATAATTTTATTA-ATTTT-T
* * *
10145782 TTATTTTTA-TAATATTT
1 ATAATTTTATTAATTTTT
* *
10145799 ACAAGTTT-TTATATTTTT
1 ATAATTTTATTA-ATTTTT
10145817 AT
1 AT
10145819 TATAGTTTTT
Statistics
Matches: 72, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
16 2 0.03
17 19 0.26
18 18 0.25
19 14 0.19
20 8 0.11
21 10 0.14
22 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (18 bp):
ATAATTTTATTAATTTTT
Found at i:10145787 original size:27 final size:26
Alignment explanation
Indices: 10145741--10145794 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
10145731 TAAATAAGTT
10145741 TTTATTAATTTTATTAATTTTTATAA
1 TTTATTAATTTTATTAATTTTTATAA
*
10145767 TTTATTAGATTTTATTTATTTTTATAA
1 TTTATTA-ATTTTATTAATTTTTATAA
10145794 T
1 T
10145795 ATTTACAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (26 bp):
TTTATTAATTTTATTAATTTTTATAA
Found at i:10145815 original size:36 final size:37
Alignment explanation
Indices: 10145739--10145830 Score: 91
Period size: 36 Copynumber: 2.5 Consensus size: 37
10145729 TTTAAATAAG
* * *
10145739 TTTTTA-TTAATTTTATTAATTTTTATAATTTATTAGA
1 TTTTTATTTATTTTTA-TAATATTTACAATTTATTAGA
*
10145776 -TTTTATTTATTTTTATAATATTTACAAGTTT-TTATA
1 TTTTTATTTATTTTTATAATATTTACAA-TTTATTAGA
10145812 TTTTTATTATAGTTTTTAT
1 TTTTTATT-TA-TTTTTAT
10145831 TATAATTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
36 19 0.41
37 18 0.39
38 2 0.04
39 7 0.15
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (37 bp):
TTTTTATTTATTTTTATAATATTTACAATTTATTAGA
Found at i:10145829 original size:12 final size:11
Alignment explanation
Indices: 10145807--10145840 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
10145797 TTACAAGTTT
10145807 TTATATTTTTA
1 TTATATTTTTA
10145818 TTATAGTTTTTA
1 TTATA-TTTTTA
*
10145830 TTATAATTTTA
1 TTATATTTTTA
10145841 ATAAGTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (11 bp):
TTATATTTTTA
Found at i:10145849 original size:20 final size:20
Alignment explanation
Indices: 10145755--10145863 Score: 52
Period size: 18 Copynumber: 5.5 Consensus size: 20
10145745 TTAATTTTAT
*
10145755 TAATTTTTATAA-TTTATTA
1 TAATTTTAATAAGTTTATTA
* * *
10145774 -GATTTTATTTA-TTT-TTA
1 TAATTTTAATAAGTTTATTA
*
10145791 TAATATTT-ACAAGTTT-TTA
1 TAAT-TTTAATAAGTTTATTA
* *
10145810 TATTTTTATTATAGTTTTTATTA
1 TAATTTTAATA-AG--TTTATTA
10145833 TAATTTTAATAAGTTTA-TA
1 TAATTTTAATAAGTTTATTA
*
10145852 TCATTTTTAATA
1 T-AATTTTAATA
10145864 TTTAATATTT
Statistics
Matches: 67, Mismatches: 14, Indels: 17
0.68 0.14 0.17
Matches are distributed among these distances:
17 3 0.04
18 16 0.24
19 16 0.24
20 15 0.22
22 5 0.07
23 12 0.18
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (20 bp):
TAATTTTAATAAGTTTATTA
Found at i:10145902 original size:10 final size:10
Alignment explanation
Indices: 10145734--10145904 Score: 52
Period size: 10 Copynumber: 16.9 Consensus size: 10
10145724 AATATTTTAA
*
10145734 ATAAGTTTTT
1 ATAATTTTTT
*
10145744 ATTAATTTTAT
1 A-TAATTTTTT
10145755 -TAA-TTTTT
1 ATAATTTTTT
*
10145763 ATAATTTATT
1 ATAATTTTTT
*
10145773 A-GATTTTATT
1 ATAATTTT-TT
10145783 -T-A-TTTTT
1 ATAATTTTTT
*
10145790 ATAA-TATTT
1 ATAATTTTTT
* *
10145799 ACAAGTTTTT
1 ATAATTTTTT
*
10145809 ATATTTTTATT
1 ATAATTTT-TT
*
10145820 ATAGTTTTTATT
1 ATA-ATTTT-TT
*
10145832 ATAA-TTTTA
1 ATAATTTTTT
* *
10145841 ATAAGTTTAT
1 ATAATTTTTT
*
10145851 ATCATTTTTAAT
1 ATAATTTTT--T
10145863 ATTTAATATTTTT
1 A--TAAT-TTTTT
*
10145876 GTAATTTTTT
1 ATAATTTTTT
* *
10145886 CTTATTTTTT
1 ATAATTTTTT
10145896 ATAATTTTT
1 ATAATTTTT
10145905 AAGTTTTTTA
Statistics
Matches: 120, Mismatches: 25, Indels: 32
0.68 0.14 0.18
Matches are distributed among these distances:
7 2 0.02
8 8 0.07
9 24 0.20
10 49 0.41
11 16 0.13
12 13 0.11
13 1 0.01
14 3 0.03
15 4 0.03
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:10146326 original size:86 final size:86
Alignment explanation
Indices: 10146225--10146499 Score: 354
Period size: 86 Copynumber: 3.2 Consensus size: 86
10146215 AAGATCAGGG
* ** * *
10146225 TCTTTAGCGGTGCTTTTTTCTCAAACCCCGCAATAGACCCTGATCTATAGCGGCGCTTTGACCAC
1 TCTTTAGCGGCGCTTTTCCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTAACCAC
*
10146290 AAACGCCACGAAAGAACCTAA
66 AAACGCCACTAAAGAACCTAA
* *
10146311 TCTTTAGCGGCGCTTTCCCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTCAACCAC
1 TCTTTAGCGGCGCTTTTCCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTAACCAC
*
10146376 AAACGCCATTAAAGAACCTAA
66 AAACGCCACTAAAGAACCTAA
* * * * * **
10146397 TCTTTAGCGGCGCTTTACCCACAAACGCCGCTAA-AGACCATGATCTTTAGTGGCGCTTTTTCCA
1 TCTTTAGCGGCGCTTTTCCCTCAAACGCCGC-AATAGACCCTGATCTATAGCGGCGCTTTAACCA
* * *
10146461 CAAACGCCGCTAAAGACCCTTA
65 CAAACGCCACTAAAGAACCTAA
*
10146483 TCTTTAGCGGCGTTTTT
1 TCTTTAGCGGCGCTTTT
10146500 TTAAAAAAAC
Statistics
Matches: 165, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
86 163 0.99
87 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (86 bp):
TCTTTAGCGGCGCTTTTCCCTCAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTTAACCAC
AAACGCCACTAAAGAACCTAA
Found at i:10146500 original size:43 final size:43
Alignment explanation
Indices: 10146225--10146500 Score: 268
Period size: 43 Copynumber: 6.4 Consensus size: 43
10146215 AAGATCAGGG
* * * *
10146225 TCTTTAGCGGTGCTTTTTTCTCAAACCCCGC-AATAGACCCTGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAA-AGACCCTGA
* ** * * * *
10146268 TCTATAGCGGCGCTTTGACCACAAACGCCACGAAAGAACCTAA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
** *
10146311 TCTTTAGCGGCGCTTTCCCCTCAAACGCCGC-AATAGACCCTGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAA-AGACCCTGA
* *** ** * *
10146354 TCTATAGCGGCGCTTCAACCACAAACGCCATTAAAGAACCTAA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
** *
10146397 TCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCATGA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
* *
10146440 TCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTA
1 TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
*
10146483 TCTTTAGCGGCGTTTTTT
1 TCTTTAGCGGCGCTTTTT
10146501 TAAAAAAACG
Statistics
Matches: 189, Mismatches: 41, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
42 2 0.01
43 183 0.97
44 4 0.02
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTGA
Found at i:10146518 original size:44 final size:43
Alignment explanation
Indices: 10146396--10146518 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 43
10146386 AAAGAACCTA
**** *
10146396 ATCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGACCATG
1 ATCTTTAGCGGCGCTTTTTAAAAAAACGCCGCTAAAGACCATG
* ** * * *
10146439 ATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTT
1 ATCTTTAGCGGCGCTTTTTAAAAAAACGCCGCTAAAGACCATG
* *
10146482 ATCTTTAGCGGCGTTTTTTTAAAAAAACGCCACTAAA
1 ATCTTTAGCGGCG-CTTTTTAAAAAAACGCCGCTAAA
10146519 TTTGGCAGAT
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
43 50 0.74
44 18 0.26
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (43 bp):
ATCTTTAGCGGCGCTTTTTAAAAAAACGCCGCTAAAGACCATG
Found at i:10146819 original size:21 final size:21
Alignment explanation
Indices: 10146793--10146888 Score: 102
Period size: 21 Copynumber: 4.6 Consensus size: 21
10146783 TTTAACGCTA
* *
10146793 CTCTGCTTCCCTTGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * **
10146814 CTCTGCTTCCCTCGTTTTAGC
1 CTCTGCTTCTCTCGCTGCAGC
*
10146835 CTCTGCTTCTCTCGCTGTAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * *
10146856 CTGTACTTCTCTCGCTGCTGC
1 CTCTGCTTCTCTCGCTGCAGC
10146877 CTCTGCTTCTCT
1 CTCTGCTTCTCT
10146889 TGTTGCCGCA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.04, C:0.40, G:0.17, T:0.40
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCAGC
Done.