Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 33 of 228
Found at i:10146970 original size:66 final size:66
Alignment explanation
Indices: 10146876--10147041 Score: 192
Period size: 66 Copynumber: 2.5 Consensus size: 66
10146866 CTCGCTGCTG
* * * * *
10146876 CCTCTGCTTCTCTTGTTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAGCTG-TAACTGGAGTTCTTCATATCTTT-GTT
10146939 GAA
64 GAA
* * * *
10146942 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAACTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAGCTGTAACTGGAGTTCTTCATATCTTTGTTGA
10147007 A
66 A
* * *
10147008 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAG
1 CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAG
10147042 TTGTGTAATT
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
65 1 0.01
66 80 0.94
67 4 0.05
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGATGCTGCATCTGCTTTAAGCTGTAACTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:10152276 original size:9 final size:9
Alignment explanation
Indices: 10152240--10152540 Score: 116
Period size: 9 Copynumber: 36.0 Consensus size: 9
10152230 AATTGCACGG
10152240 GTAAGTTAT
1 GTAAGTTAT
*
10152249 GT-A-TTGT
1 GTAAGTTAT
*
10152256 GTAAGCTAT
1 GTAAGTTAT
*
10152265 GTAAGTTGT
1 GTAAGTTAT
10152274 GT-A-TTAT
1 GTAAGTTAT
10152281 GTAAGTTAT
1 GTAAGTTAT
10152290 -T-A-TTAT
1 GTAAGTTAT
10152296 GCTTTAAGTTAT
1 G---TAAGTTAT
*
10152308 GTAAGTAAT
1 GTAAGTTAT
10152317 GT-A-TTAT
1 GTAAGTTAT
*
10152324 GTAAGTTGT
1 GTAAGTTAT
*
10152333 GT-A-TAAT
1 GTAAGTTAT
*
10152340 GTTAGTTAT
1 GTAAGTTAT
**
10152349 CAAAGTTAT
1 GTAAGTTAT
10152358 GT-A-TTAT
1 GTAAGTTAT
10152365 GTAAGTTAT
1 GTAAGTTAT
*
10152374 TTAAGTTAT
1 GTAAGTTAT
*
10152383 GTAA--CAT
1 GTAAGTTAT
*
10152390 GTAAATTAT
1 GTAAGTTAT
*
10152399 GTAAGTTGT
1 GTAAGTTAT
*
10152408 GT-A-TAAT
1 GTAAGTTAT
*
10152415 GTTAGTTAT
1 GTAAGTTAT
** *
10152424 CAAAGTAAT
1 GTAAGTTAT
10152433 GT-A-TTAT
1 GTAAGTTAT
*
10152440 GTAAGTTGT
1 GTAAGTTAT
*
10152449 GT-A-TAAT
1 GTAAGTTAT
*
10152456 GTTAGTTAT
1 GTAAGTTAT
**
10152465 CAAAGTTAT
1 GTAAGTTAT
10152474 GT-A-TTAT
1 GTAAGTTAT
***
10152481 GTGTTTCTAT
1 GTAAGT-TAT
*
10152491 TTAAGTTAT
1 GTAAGTTAT
*
10152500 GTAAGTTGT
1 GTAAGTTAT
10152509 GT-A-TTAT
1 GTAAGTTAT
*
10152516 GTAAGTTGT
1 GTAAGTTAT
10152525 GT-A-TTAT
1 GTAAGTTAT
10152532 GTAAGTTAT
1 GTAAGTTAT
10152541 TAAAAATTGA
Statistics
Matches: 209, Mismatches: 52, Indels: 62
0.65 0.16 0.19
Matches are distributed among these distances:
6 4 0.02
7 61 0.29
8 22 0.11
9 110 0.53
10 6 0.03
11 1 0.00
12 5 0.02
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:10152281 original size:16 final size:16
Alignment explanation
Indices: 10152262--10152540 Score: 95
Period size: 16 Copynumber: 17.8 Consensus size: 16
10152252 TTGTGTAAGC
*
10152262 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
10152278 TATGTAAGTTAT-TAT
1 TATGTAAGTTATGTAT
*
10152293 TATGCT---TTAAG--T
1 TATG-TAAGTTATGTAT
*
10152305 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
*
10152321 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * **
10152337 AATGTTAGTTATCAAAGT
1 TATGTAAGTTAT-GTA-T
10152355 TATGT-A-TTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
10152371 TATTTAAGTTATGTAA
1 TATGTAAGTTATGTAT
* *
10152387 CATGTAAATTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
10152405 TGTGT-A-TAATGTTAGT
1 TATGTAAGTTATG-TA-T
** *
10152421 TATCAAAGTAATGTAT
1 TATGTAAGTTATGTAT
*
10152437 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
* * **
10152453 AATGTTAGTTATCAAAGT
1 TATGTAAGTTAT-GTA-T
*
10152471 TATGT-A-TTATGTGT
1 TATGTAAGTTATGTAT
* * *
10152485 T-TCT-ATTTAAG--T
1 TATGTAAGTTATGTAT
*
10152497 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
*
10152513 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
10152529 TATGTAAGTTAT
1 TATGTAAGTTAT
10152541 TAAAAATTGA
Statistics
Matches: 193, Mismatches: 46, Indels: 48
0.67 0.16 0.17
Matches are distributed among these distances:
11 1 0.01
12 7 0.04
13 8 0.04
14 13 0.07
15 7 0.04
16 121 0.63
17 12 0.06
18 24 0.12
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:10152348 original size:25 final size:25
Alignment explanation
Indices: 10152300--10152451 Score: 121
Period size: 25 Copynumber: 6.1 Consensus size: 25
10152290 TATTATGCTT
10152300 TAAGTTATGTAAGTAATG-TA-TTATG
1 TAAGTTATGT-A-TAATGTTAGTTATG
* *
10152325 TAAGTTGTGTATAATGTTAGTTATC
1 TAAGTTATGTATAATGTTAGTTATG
* * * *
10152350 AAAGTTATGTATTATGTAAGTTATT
1 TAAGTTATGTATAATGTTAGTTATG
* *
10152375 TAAGTTATGTA-ACATGTAAATTATG
1 TAAGTTATGTATA-ATGTTAGTTATG
* *
10152400 TAAGTTGTGTATAATGTTAGTTATC
1 TAAGTTATGTATAATGTTAGTTATG
* * * * *
10152425 AAAGTAATGTATTATGTAAGTTGTG
1 TAAGTTATGTATAATGTTAGTTATG
10152450 TA
1 TA
10152452 TAATGTTAGT
Statistics
Matches: 100, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
23 5 0.05
24 3 0.03
25 91 0.91
26 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (25 bp):
TAAGTTATGTATAATGTTAGTTATG
Found at i:10152360 original size:41 final size:41
Alignment explanation
Indices: 10152267--10152540 Score: 245
Period size: 41 Copynumber: 7.0 Consensus size: 41
10152257 TAAGCTATGT
* * * **
10152267 AAGTTGTGTATTATGTAAGTTAT-TATTATGCTTTAAGTTATGT
1 AAGTTATGTATTATGTAAGTTGTGTATAATG--TT-AGTTATCA
*
10152310 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
* *
10152351 AAGTTATGTATTATGTAAGTTAT-T-TAA-GTTA-TGTAAC-
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGT-TATCA
* *
10152388 ATG-TA--AATTATGTAAGTTGTGTATAATGTTAGTTATCA
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
*
10152426 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
* * **
10152467 AAGTTATGTATTATGT--GTT-TCTAT--T-TAAGTTATGT
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
* * *
10152502 AAGTTGTGTATTATGTAAGTTGTGTATTATGTAAGTTAT
1 AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTAT
10152541 TAAAAATTGA
Statistics
Matches: 192, Mismatches: 23, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
34 13 0.07
35 23 0.12
36 6 0.03
37 13 0.07
38 18 0.09
39 7 0.04
40 2 0.01
41 82 0.43
42 2 0.01
43 20 0.10
44 6 0.03
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.47
Consensus pattern (41 bp):
AAGTTATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
Found at i:10152379 original size:75 final size:74
Alignment explanation
Indices: 10152298--10152446 Score: 246
Period size: 75 Copynumber: 2.0 Consensus size: 74
10152288 ATTATTATGC
*
10152298 TTTAAGTTATGTAAGTAATGT-ATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTAT
1 TTTAAGTTATGTAA--AATGTAATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTAATGTAT
10152362 TATGTAAGTTA
64 TATGTAAGTTA
*
10152373 TTTAAGTTATGTAACATGTAAATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTAATGTATT
1 TTTAAGTTATGTAAAATGT-AATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTAATGTATT
10152438 ATGTAAGTT
65 ATGTAAGTT
10152447 GTGTATAATG
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
73 4 0.06
75 66 0.94
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (74 bp):
TTTAAGTTATGTAAAATGTAATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTAATGTATTA
TGTAAGTTA
Found at i:10152685 original size:121 final size:121
Alignment explanation
Indices: 10152543--10152820 Score: 495
Period size: 121 Copynumber: 2.3 Consensus size: 121
10152533 TAAGTTATTA
* *
10152543 AAAATTGAAATGTAGGATATATATCCATACCATATATGGGGTGATATATTAAAAATATAGGTTTT
1 AAAATTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAAATATAGGTTTT
*
10152608 AATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTTG-TAAT
66 AATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCA-TTGACAAT
*
10152664 AAATTTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAAATATAGGTTTT
1 AAAATTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAAATATAGGTTTT
*
10152729 AATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTTATTGACAAT
66 AATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTGACAAT
10152785 AAAATTGAAATATAGGTTATATATCCATACCATATA
1 AAAATTGAAATATAGGTTATATATCCATACCATATA
10152821 GCTAAATTTT
Statistics
Matches: 150, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 3 0.02
121 147 0.98
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (121 bp):
AAAATTGAAATATAGGTTATATATCCATACCATATATGGGGTGATATATTAAAAATATAGGTTTT
AATATTTAAAAATAACATTTACAATTATTTTTAAAATTATAAAATTCATTGACAAT
Found at i:10152878 original size:18 final size:18
Alignment explanation
Indices: 10152855--10152943 Score: 101
Period size: 18 Copynumber: 4.8 Consensus size: 18
10152845 ATATAAAAAG
10152855 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
10152873 TTTAAGTAATGTAAGTTATAAA
1 TTTAAGTAATGTAA--TAT--A
**
10152895 TTTTTGTAA-GTAATATA
1 TTTAAGTAATGTAATATA
10152912 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
*
10152930 TTTTAGTAA-GTAAT
1 TTTAAGTAATGTAAT
10152944 GTAAGTAATG
Statistics
Matches: 61, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
17 13 0.21
18 30 0.49
19 3 0.05
20 3 0.05
21 4 0.07
22 8 0.13
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:10152938 original size:31 final size:31
Alignment explanation
Indices: 10152857--10152961 Score: 100
Period size: 31 Copynumber: 3.5 Consensus size: 31
10152847 ATAAAAAGTT
10152857 TAAGTAATGTAATATA--TT--TAAGTAATG
1 TAAGTAATGTAATATATTTTAGTAAGTAATG
* * *
10152884 TAAGT--TATAA-ATTTTTGTAAGTAA-TATATT
1 TAAGTAATGTAATATATTT-T-AGTAAGTA-ATG
10152914 TAAGTAATGTAATATATTTTAGTAAGTAATG
1 TAAGTAATGTAATATATTTTAGTAAGTAATG
10152945 TAAGTAATGTAATATAT
1 TAAGTAATGTAATATAT
10152962 ACTTTAATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
24 2 0.03
25 4 0.07
26 1 0.02
27 6 0.10
29 2 0.03
30 10 0.16
31 24 0.39
32 7 0.11
33 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.44
Consensus pattern (31 bp):
TAAGTAATGTAATATATTTTAGTAAGTAATG
Found at i:10153000 original size:13 final size:13
Alignment explanation
Indices: 10152984--10153075 Score: 73
Period size: 13 Copynumber: 6.9 Consensus size: 13
10152974 GTAAGTCATG
10152984 TATTTAAGTAATA
1 TATTTAAGTAATA
10152997 TATTTAA-TCCAAT-
1 TATTTAAGT--AATA
* * *
10153010 TCTAGTAAGTAATG
1 TAT-TTAAGTAATA
10153024 TATTTAAGTAATA
1 TATTTAAGTAATA
10153037 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
10153049 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
10153064 TATTTAAGTAAT
1 TATTTAAGTAAT
10153076 GTAAGTTATA
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
12 5 0.08
13 38 0.61
14 14 0.23
15 5 0.08
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:10153025 original size:40 final size:39
Alignment explanation
Indices: 10152969--10153092 Score: 151
Period size: 40 Copynumber: 3.1 Consensus size: 39
10152959 TATACTTTAA
* *
10152969 TTTTAGTAAGTCATGTATTTAAGTAATATATTTAATCCAA
1 TTTTAGTAAGTAATGTATTTAAGTAATATATTTAAT-AAA
*
10153009 TTCTAGTAAGTAATGTATTTAAGTAATATATTTAAGTAAA
1 TTTTAGTAAGTAATGTATTTAAGTAATATATTTAA-TAAA
* * * *
10153049 TTTTAGTAATTAATATATTTAAGTAATGTAAGTT-ATAAA
1 TTTTAGTAAGTAATGTATTTAAGTAATAT-ATTTAATAAA
10153088 TTTTA
1 TTTTA
10153093 AAAATATATA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 9 0.12
40 61 0.82
41 4 0.05
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.46
Consensus pattern (39 bp):
TTTTAGTAAGTAATGTATTTAAGTAATATATTTAATAAA
Found at i:10156669 original size:7 final size:7
Alignment explanation
Indices: 10156657--10156749 Score: 80
Period size: 7 Copynumber: 12.9 Consensus size: 7
10156647 TTAATTGACG
10156657 CCCTAAA
1 CCCTAAA
10156664 CCCTAAA
1 CCCTAAA
*
10156671 TCCCTAAC
1 -CCCTAAA
*
10156679 CCCTAAC
1 CCCTAAA
10156686 CCCTAAA
1 CCCTAAA
*
10156693 CTCCTAAC
1 C-CCTAAA
10156701 CCCTAAA
1 CCCTAAA
*
10156708 TCCCTAAC
1 -CCCTAAA
*
10156716 CCCTAAC
1 CCCTAAA
10156723 CCCTAAA
1 CCCTAAA
* *
10156730 CCTTATAT
1 CCCTA-AA
10156738 CCC-AAA
1 CCCTAAA
10156744 CCCTAA
1 CCCTAA
10156750 TAATCATATA
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
6 4 0.06
7 46 0.65
8 21 0.30
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.19
Consensus pattern (7 bp):
CCCTAAA
Found at i:10156677 original size:15 final size:14
Alignment explanation
Indices: 10156657--10156749 Score: 80
Period size: 15 Copynumber: 6.4 Consensus size: 14
10156647 TTAATTGACG
10156657 CCCTAAACCCTAAA
1 CCCTAAACCCTAAA
* *
10156671 TCCCTAACCCCTAAC
1 -CCCTAAACCCTAAA
*
10156686 CCCTAAACTCCTAAC
1 CCCTAAAC-CCTAAA
*
10156701 CCCTAAATCCCTAAC
1 CCCTAAA-CCCTAAA
*
10156716 CCCTAACCCCTAAA
1 CCCTAAACCCTAAA
* *
10156730 CCTTATATCCC-AAA
1 CCCTA-AACCCTAAA
10156744 CCCTAA
1 CCCTAA
10156750 TAATCATATA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
13 1 0.01
14 24 0.36
15 41 0.61
16 1 0.01
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.19
Consensus pattern (14 bp):
CCCTAAACCCTAAA
Found at i:10156745 original size:22 final size:21
Alignment explanation
Indices: 10156657--10156746 Score: 99
Period size: 22 Copynumber: 4.1 Consensus size: 21
10156647 TTAATTGACG
10156657 CCCTAAACCCTAAATCCCTAAC
1 CCCTAAACCCT-AATCCCTAAC
* *
10156679 CCCTAACCCCTAAACTCCTAAC
1 CCCTAAACCCTAATC-CCTAAC
*
10156701 CCCTAAATCCCTAACCCCTAAC
1 CCCTAAA-CCCTAATCCCTAAC
* *
10156723 CCCTAAACCTTATATCCCAAAC
1 CCCTAAACCCTA-ATCCCTAAC
10156745 CC
1 CC
10156747 TAATAATCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
21 7 0.12
22 44 0.76
23 7 0.12
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (21 bp):
CCCTAAACCCTAATCCCTAAC
Found at i:10157467 original size:20 final size:20
Alignment explanation
Indices: 10157422--10157466 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
10157412 AAAAATTATA
*
10157422 ATTTTTATTTTTTTTATTTC
1 ATTTTTATTTTTTGTATTTC
*
10157442 ATTTTTA-TTTTTGTATTTT
1 ATTTTTATTTTTTGTATTTC
10157461 ATTTTT
1 ATTTTT
10157467 TCTTATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (20 bp):
ATTTTTATTTTTTGTATTTC
Found at i:10157879 original size:21 final size:20
Alignment explanation
Indices: 10157849--10157889 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
10157839 CCTAACTCCT
*
10157849 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
10157870 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
10157890 TAAATCCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:10158899 original size:41 final size:41
Alignment explanation
Indices: 10158797--10159034 Score: 316
Period size: 41 Copynumber: 5.8 Consensus size: 41
10158787 TTATTATTAC
* * * *
10158797 TAGCGGCGCTTTTTTAAAAACGCCGCTAAAGGCCACAGCAA
1 TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCAGAGCAT
* * * ** *
10158838 TA-CCGCGCTTCTTTAAAAACGCCGCTAAAGATCTGAGCAT
1 TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCAGAGCAT
* * *
10158878 TAGCGGCGCTTATTCAAAAACGCCGCTAAAAGACAAAGCAT
1 TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCAGAGCAT
*
10158919 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGCAT
1 TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCAGAGCAT
* *
10158960 TAGCAGCGCTTACTCAAAAACGCCGCTAAAGGCCAGAGCAT
1 TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCAGAGCAT
*
10159001 TAGCGGCGTTTATTCAAAAACGCCGCTAAAGGCC
1 TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCC
10159035 CCAAAAACCC
Statistics
Matches: 171, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 33 0.19
41 138 0.81
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.19
Consensus pattern (41 bp):
TAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCAGAGCAT
Found at i:10159015 original size:123 final size:122
Alignment explanation
Indices: 10158797--10159030 Score: 362
Period size: 123 Copynumber: 1.9 Consensus size: 122
10158787 TTATTATTAC
* * *
10158797 TAGCGGCGCTTTTTTAAAAACGCCGCTAAAGGCCACAGCAATACCGCGCTTCTTTAAAAACGCCG
1 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCACAGCAATACAGCGCTTCTTCAAAAACGCCG
* *
10158862 CTAAAGATCTGAGCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAAGACAAAGCAT
66 CTAAAGACCAGAGCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAAGACAAAGCAT
* *
10158919 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCAGAGCATTAGCAGCGCTTAC-TCAAAAACGC
1 TAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCACAGCAATA-CAGCGCTT-CTTCAAAAACGC
* *
10158983 CGCTAAAGGCCAGAGCATTAGCGGCGTTTATTCAAAAACGCCGCTAAA
64 CGCTAAAGACCAGAGCATTAGCGGCGCTTATTCAAAAACGCCGCTAAA
10159031 GGCCCCAAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
122 40 0.40
123 60 0.59
124 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (122 bp):
TAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCACAGCAATACAGCGCTTCTTCAAAAACGCCG
CTAAAGACCAGAGCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAAGACAAAGCAT
Found at i:10159179 original size:41 final size:39
Alignment explanation
Indices: 10159090--10159183 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 39
10159080 CGCTTTTCAG
*
10159090 AAAACGCCGCTAATGCTCTACCTTTAGCGGCGTTTTTTT
1 AAAACGCCGCTAATGCTCGACCTTTAGCGGCGTTTTTTT
** *
10159129 AAAAGCGCCGCTAATGCTCGATTTTTAGTGGCGTTTTTTGT
1 AAAA-CGCCGCTAATGCTCGACCTTTAGCGGCGTTTTTT-T
*
10159170 CCAAACGCCGCTAA
1 -AAAACGCCGCTAA
10159184 AAGCCTGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.09
40 30 0.64
41 10 0.21
42 3 0.06
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (39 bp):
AAAACGCCGCTAATGCTCGACCTTTAGCGGCGTTTTTTT
Found at i:10159375 original size:19 final size:19
Alignment explanation
Indices: 10159338--10159376 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10159328 TAAGAGCTTA
*
10159338 TAAATAATTATTAAATTAT
1 TAAATAATTAATAAATTAT
10159357 TAAATAA-TAATAAAGTTAT
1 TAAATAATTAATAAA-TTAT
10159376 T
1 T
10159377 GTGAAAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
TAAATAATTAATAAATTAT
Found at i:10160478 original size:22 final size:22
Alignment explanation
Indices: 10160440--10160495 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
10160430 GTATTTAAAA
10160440 AAAACAAATAAACTAATAATGG-
1 AAAA-AAATAAACTAATAATGGC
*
10160462 AATAAAATAACACTAATAATGGC
1 AAAAAAATAA-ACTAATAATGGC
10160485 AAAAAAATAAA
1 AAAAAAATAAA
10160496 AATAAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 6 0.20
22 15 0.50
23 9 0.30
ACGTcount: A:0.66, C:0.09, G:0.07, T:0.18
Consensus pattern (22 bp):
AAAAAAATAAACTAATAATGGC
Found at i:10160504 original size:13 final size:13
Alignment explanation
Indices: 10160486--10160510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10160476 AATAATGGCA
10160486 AAAAAATAAAAAT
1 AAAAAATAAAAAT
10160499 AAAAAATAAAAA
1 AAAAAATAAAAA
10160511 AACAAGCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:10164133 original size:5 final size:5
Alignment explanation
Indices: 10164120--10164149 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
10164110 TTTAATACAG
10164120 TTCATA TTCAA TTCAA TTCAA TTCAA TTCA
1 TTCA-A TTCAA TTCAA TTCAA TTCAA TTCA
10164150 CATCCTAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (5 bp):
TTCAA
Found at i:10168691 original size:19 final size:19
Alignment explanation
Indices: 10168667--10168710 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
10168657 TAAAAGCAAC
10168667 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
10168686 ACAACATGATTCCAAATAA
1 ACAACATCAACCCAAATAA
10168705 ACAACA
1 ACAACA
10168711 AAAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:10171385 original size:90 final size:90
Alignment explanation
Indices: 10171281--10171680 Score: 640
Period size: 90 Copynumber: 4.4 Consensus size: 90
10171271 ATTAAAAATT
*
10171281 AATTAATATAATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACATTTTAAAC
1 AATTAATATAATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTTTAAAC
10171346 TTTAAAGTTAGTTAATTGAAGCCTA
66 TTTAAAGTTAGTTAATTGAAGCCTA
* * *
10171371 AATTAATATAATAGTACAATAACATAAATTAAACAAAAAAAAGTCTGTTAAGCTATC-GTTTAAA
1 AATTAATATAATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTA-CAGTTTAAA
10171435 CTTTAAAGTTAGTTAATTGAAGCCTA
65 CTTTAAAGTTAGTTAATTGAAGCCTA
10171461 AATTAATATAATAGTACAAGTACGACATCATAAATTAAACAAAAAAAAGTATGTTAAACTACAGT
1 AATTAATATAATAGTAC-A--AC-A-A-CATAAATTAAACAAAAAAAAGTATGTTAAACTACAGT
10171526 TTAAACTTTAAAGTTAGTTAATTGAAGCCTA
60 TTAAACTTTAAAGTTAGTTAATTGAAGCCTA
* * *
10171557 AATTAATATAATAGTACAATAGCATAAATTAAACAAAAAAAAAAGTATGTTAAACCACAGTTTAA
1 AATTAATATAATAGTACAACAACATAAATTAAAC--AAAAAAAAGTATGTTAAACTACAGTTTAA
10171622 ACTTTAAAGTTAGTTAATTGAAGCCTA
64 ACTTTAAAGTTAGTTAATTGAAGCCTA
*
10171649 AATTAATATAATAGTACAACAGCATAAATTAA
1 AATTAATATAATAGTACAACAACATAAATTAA
10171681 TTAATTGAAG
Statistics
Matches: 289, Mismatches: 11, Indels: 18
0.91 0.03 0.06
Matches are distributed among these distances:
90 113 0.39
91 2 0.01
92 87 0.30
93 2 0.01
94 1 0.00
95 3 0.01
96 81 0.28
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.30
Consensus pattern (90 bp):
AATTAATATAATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACAGTTTAAAC
TTTAAAGTTAGTTAATTGAAGCCTA
Found at i:10171589 original size:186 final size:187
Alignment explanation
Indices: 10171276--10171667 Score: 659
Period size: 186 Copynumber: 2.1 Consensus size: 187
10171266 ATTAAATTAA
10171276 AAATTAAT-TAATA-TA-ATAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACA
1 AAATTAATATAATAGTACA-AGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACA
*
10171338 TTTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAA
65 GTTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAA
* * *
10171403 AC-AAAAAAAAGTCTGTTAAGCTATC-GTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
130 ACAAAAAAAAAGTATGTTAAACCA-CAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
* *
10171460 AAATTAATATAATAGTACAAGTACGACATCATAAATTAAACAAAAAAAAGTATGTTAAACTACAG
1 AAATTAATATAATAGTACAAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACAG
*
10171525 TTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAGCATAAATTAAA
66 TTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAAA
10171590 CAAAAAAAAAAGTATGTTAAACCACAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
131 C-AAAAAAAAAGTATGTTAAACCACAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
10171648 AAATTAATATAATAGTACAA
1 AAATTAATATAATAGTACAA
10171668 CAGCATAAAT
Statistics
Matches: 195, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
184 8 0.04
185 5 0.03
186 110 0.56
187 2 0.01
188 70 0.36
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (187 bp):
AAATTAATATAATAGTACAAGTACAACAACATAAATTAAACAAAAAAAAGTATGTTAAACTACAG
TTTAAACTTTAAAGTTAGTTAATTGAAGCCTAAATTAATATAATAGTACAATAACATAAATTAAA
CAAAAAAAAAGTATGTTAAACCACAGTTTAAACTTTAAAGTTAGTTAATTGAAGCCT
Found at i:10172006 original size:17 final size:17
Alignment explanation
Indices: 10171984--10172035 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
10171974 TTTTATCTAT
*
10171984 TAATATTATGTTATTAC
1 TAATATTATATTATTAC
10172001 TAATATTATATTATTAC
1 TAATATTATATTATTAC
*
10172018 TAATATTACATTATTAC
1 TAATATTATATTATTAC
10172035 T
1 T
10172036 TTGGGAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (17 bp):
TAATATTATATTATTAC
Found at i:10172607 original size:3 final size:3
Alignment explanation
Indices: 10172599--10172628 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10172589 GGTTTATTTT
10172599 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
10172629 GGTTTATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10173435 original size:44 final size:44
Alignment explanation
Indices: 10173371--10173461 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
10173361 ATTGCTAAGA
*
10173371 TAATATTAAAATAATATACACTAATCAGAGTTTAAGTAAAAAAT
1 TAATATTAAAATAATATACACTAATCAAAGTTTAAGTAAAAAAT
* * * *
10173415 TAATATTAAAATAATCTACACTAATTAAAGTTTAAGTGAGAAAT
1 TAATATTAAAATAATATACACTAATCAAAGTTTAAGTAAAAAAT
10173459 TAA
1 TAA
10173462 AAACAAAAGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.33
Consensus pattern (44 bp):
TAATATTAAAATAATATACACTAATCAAAGTTTAAGTAAAAAAT
Found at i:10188002 original size:12 final size:12
Alignment explanation
Indices: 10187985--10188010 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10187975 CATTCCGAAG
10187985 TATATATATACA
1 TATATATATACA
10187997 TATATATATACA
1 TATATATATACA
10188009 TA
1 TA
10188011 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:10188516 original size:27 final size:27
Alignment explanation
Indices: 10188485--10188662 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
10188475 TAAATTGTAC
10188485 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
10188512 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10188538 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
10188566 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
10188594 AGCACTAAGTGTGCGGTTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10188621 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10188648 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10188663 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10188626 original size:82 final size:81
Alignment explanation
Indices: 10188486--10188641 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
10188476 AAATTGTACA
* *
10188486 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
10188551 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
*** *
10188567 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGGTTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
10188631 GTGCGAGTTGA
64 GTGCGAATTGA
10188642 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:10188653 original size:82 final size:81
Alignment explanation
Indices: 10188482--10188662 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
10188472 GATTAAATTG
* *
10188482 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
10188547 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
10188563 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGGTTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10188627 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10188645 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10188663 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10196687 original size:27 final size:27
Alignment explanation
Indices: 10196657--10196830 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
10196647 TTGTACAGCG
*
10196657 CTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
** *
10196684 CTAAGTGTGCGAAATGAATATG-ATGCA
1 CTAAGTGTGCGATTTGACTATGTA-GCA
* * * **
10196711 CTAAGTGTGTGAATTGACCATGCGGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
10196738 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGA-TTTGACTATGTAGCA
* *
10196766 CTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
* * *
10196793 CTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
*
10196820 CTGAGTGTGCG
1 CTAAGTGTGCG
10196831 GACTCAATAT
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
CTAAGTGTGCGATTTGACTATGTAGCA
Found at i:10196821 original size:82 final size:81
Alignment explanation
Indices: 10196650--10196830 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
10196640 GATTAAATTG
* * *
10196650 TACAGCGCTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
10196715 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
10196731 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
10196795 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
10196813 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
10196831 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:10216429 original size:21 final size:20
Alignment explanation
Indices: 10216405--10216451 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
10216395 TGTGGCTGTG
10216405 TCTGATTCTGGTGTGGATGCA
1 TCTGATT-TGGTGTGGATGCA
* *
10216426 TCTGGCTTTGTTGTGGATGCA
1 TCT-GATTTGGTGTGGATGCA
10216447 TCTGA
1 TCTGA
10216452 GTATGCTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 18 0.82
22 3 0.14
ACGTcount: A:0.13, C:0.15, G:0.32, T:0.40
Consensus pattern (20 bp):
TCTGATTTGGTGTGGATGCA
Found at i:10229353 original size:26 final size:26
Alignment explanation
Indices: 10229322--10229408 Score: 95
Period size: 26 Copynumber: 3.3 Consensus size: 26
10229312 CTAATTTCGT
10229322 AACAAAGCTACCAGTAATAGTAACGC
1 AACAAAGCTACCAGTAATAGTAACGC
* * * *
10229348 AGCAAAGCTGCCAGTAACAGTAATGC
1 AACAAAGCTACCAGTAATAGTAACGC
* *
10229374 AACAGAGCTACCAGT-ATCAATAACGC
1 AACAAAGCTACCAGTAAT-AGTAACGC
*
10229400 ATCAAAGCT
1 AACAAAGCT
10229409 GCCAATAACA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.16
Consensus pattern (26 bp):
AACAAAGCTACCAGTAATAGTAACGC
Found at i:10229406 original size:52 final size:52
Alignment explanation
Indices: 10229322--10229421 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 52
10229312 CTAATTTCGT
* *
10229322 AACAAAGCTACCAGTAATAGTAACGCAGCAAAGCTGCCAGTAACAGTAATGC
1 AACAAAGCTACCAGTAATAATAACGCAGCAAAGCTGCCAATAACAGTAATGC
* *
10229374 AACAGAGCTACCAGT-ATCAATAACGCATCAAAGCTGCCAATAACAGTA
1 AACAAAGCTACCAGTAAT-AATAACGCAGCAAAGCTGCCAATAACAGTA
10229422 TTTGTGGCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.05
52 41 0.95
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.16
Consensus pattern (52 bp):
AACAAAGCTACCAGTAATAATAACGCAGCAAAGCTGCCAATAACAGTAATGC
Found at i:10229659 original size:27 final size:27
Alignment explanation
Indices: 10229626--10229889 Score: 184
Period size: 27 Copynumber: 9.8 Consensus size: 27
10229616 TACACTATAG
*
10229626 GGGTATTTCTGAAATTTTACCCATCAA
1 GGGTATTTCTGAAATTTTACCCATCGA
* * * *
10229653 GGTTATTTC-AATAATTTTAACCATCGG
1 GGGTATTTCTGA-AATTTTACCCATCGA
**
10229680 GGGTATTT-TGGTCATTTTACCCATCGA
1 GGGTATTTCT-GAAATTTTACCCATCGA
* * *
10229707 GGGTATTT-TGGTAGTTTTACCAATC-A
1 GGGTATTTCT-GAAATTTTACCCATCGA
*
10229733 GGGGTATTTC-GATAATTTTACCTATCGA
1 -GGGTATTTCTGA-AATTTTACCCATCGA
*
10229761 GGGTATTT-TGGTAATTTTACCCATCGA
1 GGGTATTTCT-GAAATTTTACCCATCGA
* *
10229788 GAGTATTTC-GATAGTTTTACCCATCGA
1 GGGTATTTCTGA-AATTTTACCCATCGA
* ** *
10229815 GGGTGTTT-TGGTCATTTTACCTATCGA
1 GGGTATTTCT-GAAATTTTACCCATCGA
* * * *
10229842 GGGCAGTTCAGTAATTTTACCCATCGA
1 GGGTATTTCTGAAATTTTACCCATCGA
* *
10229869 GGGTATTTCGGTAATTTTACC
1 GGGTATTTCTGAAATTTTACC
10229890 ATTCGGGGCT
Statistics
Matches: 186, Mismatches: 37, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
26 4 0.02
27 179 0.96
28 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCTGAAATTTTACCCATCGA
Found at i:10229725 original size:54 final size:53
Alignment explanation
Indices: 10229625--10229897 Score: 289
Period size: 54 Copynumber: 5.1 Consensus size: 53
10229615 TTACACTATA
* * ***
10229625 GGGGTATTTCTGA-AATTTTACCCATCAAGGTTATTTCAATAATTTTAACCATCG
1 GGGGTATTTC-GATAATTTTACCCATCGAGGGTATTTTGGTAATTTT-ACCATCG
* * * * *
10229679 GGGGTATTTTGGTCATTTTACCCATCGAGGGTATTTTGGTAGTTTTACCAATCA
1 GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACC-ATCG
*
10229733 GGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGGTAATTTTACCCATCG
1 GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTA-CCATCG
* * * * *
10229787 AGAGTATTTCGATAGTTTTACCCATCGAGGGTGTTTTGGTCATTTTACCTATCG
1 GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACC-ATCG
* * * *
10229841 AGGGCAGTTC-AGTAATTTTACCCATCGAGGGTATTTCGGTAATTTTACCATTCG
1 GGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCA-TCG
10229895 GGG
1 GGG
10229898 CTAATTTAGT
Statistics
Matches: 183, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
53 8 0.04
54 173 0.95
55 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (53 bp):
GGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCATCG
Found at i:10229748 original size:81 final size:81
Alignment explanation
Indices: 10229626--10229890 Score: 302
Period size: 81 Copynumber: 3.3 Consensus size: 81
10229616 TACACTATAG
* * * * * * * *
10229626 GGGTATTTCTGAAATTTTACCCATCAAGGTTATTTCAATAATTTTAACC-ATCGGGGGTATTTTG
1 GGGTATTTCGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTT-ACCTATCGAGGGTATTTTG
*
10229690 GTCATTTTACCCATCGA
65 GTAATTTTACCCATCGA
*
10229707 GGGTATTTTGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
1 GGGTATTTCGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
10229772 TAATTTTACCCATCGA
66 TAATTTTACCCATCGA
* * * * * * * *
10229788 GAGTATTTCGATAGTTTTACCCATCGAGGGTGT-TTT-GGTCATTTTACCTATCGAGGGCAGTTC
1 GGGTATTTCGGTAGTTTTACCAATC-AGGG-GTATTTCGATAATTTTACCTATCGAGGGTATTTT
*
10229851 AGTAATTTTACCCATCGA
64 GGTAATTTTACCCATCGA
*
10229869 GGGTATTTCGGTAATTTTACCA
1 GGGTATTTCGGTAGTTTTACCA
10229891 TTCGGGGCTA
Statistics
Matches: 157, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 3 0.02
81 145 0.92
82 7 0.04
83 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTCGGTAGTTTTACCAATCAGGGGTATTTCGATAATTTTACCTATCGAGGGTATTTTGG
TAATTTTACCCATCGA
Found at i:10229939 original size:27 final size:27
Alignment explanation
Indices: 10229855--10229965 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
10229845 CAGTTCAGTA
* * * * *
10229855 ATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGGGGGTAATTCGATC
* * *
10229882 ATTTTACCATTCGGGGCTAATT-TAGT-
1 ATTTTACCCTTCGGGGGTAATTCGA-TC
* *
10229908 TTTTTATCCTTCGGGGGTAATTCGATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
** *
10229935 ATTTTACCCTTTTGGGGTAATTCGGTC
1 ATTTTACCCTTCGGGGGTAATTCGATC
10229962 ATTT
1 ATTT
10229966 GTGGCCCATT
Statistics
Matches: 64, Mismatches: 17, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
26 19 0.30
27 45 0.70
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGGGGGTAATTCGATC
Found at i:10232731 original size:50 final size:50
Alignment explanation
Indices: 10232615--10232807 Score: 244
Period size: 50 Copynumber: 3.9 Consensus size: 50
10232605 TGATAATAAC
* * ** *
10232615 ATGCCAAAGCCATGTCCCAGACCTGGTCTTACATGGGATGTTCTCATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCG
* * *
10232666 CTGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* *
10232716 ATGCCAATGCCATGTCCTAGACATGGTCTTGCATGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * **
10232766 GTGTCAACACCATGTCCCAGACATGGTCTTACAT-GGACCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10232808 TTACCCAAAT
Statistics
Matches: 123, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 8 0.07
50 81 0.66
51 34 0.28
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:10236686 original size:50 final size:50
Alignment explanation
Indices: 10236562--10236804 Score: 317
Period size: 50 Copynumber: 4.8 Consensus size: 50
10236552 GATAATAACA
* ** *
10236562 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * ** * *
10236613 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCCCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
10236663 TGCCTACGCCATGACTCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
10236713 TGCCAACGCCATGTCCCAGACATTGTCTTACAT-GGATCCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
*
10236763 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10236805 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 3 0.02
50 126 0.76
51 36 0.22
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:10237176 original size:30 final size:29
Alignment explanation
Indices: 10237142--10237198 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
10237132 CCTCGACTCT
*
10237142 AACTTTGGCAAAATTATGATTTTGCCCCTA
1 AACTTTGAC-AAATTATGATTTTGCCCCTA
* *
10237172 AACTTTTACAAATTATGCTTTTGCCCC
1 AACTTTGACAAATTATGATTTTGCCCC
10237199 AAAGTTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.39
Consensus pattern (29 bp):
AACTTTGACAAATTATGATTTTGCCCCTA
Found at i:10239012 original size:27 final size:27
Alignment explanation
Indices: 10238971--10239327 Score: 301
Period size: 27 Copynumber: 13.2 Consensus size: 27
10238961 GGCTTGGGCC
* *
10238971 GTAAAATTACCGAAATACTCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* *
10238998 GTAAAATTATAGAAATACCCCCGGAT-G
1 GTAAAATTATCGAAATACCCTC-GATGG
** * *
10239025 GTAAAATTA-CTGAAATATACTCGACGA
1 GTAAAATTATC-GAAATACCCTCGATGG
* * * *
10239052 GTAAATTTACCGAAATACCCTCGACGA
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
10239079 GTAAATTTACCAAAATACCCTCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* *
10239106 GTAAAATTATCGAAATACCCCCAGA-GC
1 GTAAAATTATCGAAATACCCTC-GATGG
* * * *
10239133 GTAAAATAACCGAAATACCCTCCATAG
1 GTAAAATTATCGAAATACCCTCGATGG
* *
10239160 GTAAATTTA-CTGAAATACCCTCGATAG
1 GTAAAATTATC-GAAATACCCTCGATGG
* *
10239187 GTAAAATTATTGAAATACCCTCAATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* ** *
10239214 GTAAATTTATCGAAATACTGTTGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
10239241 GAAAAATTA-CTAAAATACCCCCGATGG
1 GTAAAATTATC-GAAATACCCTCGATGG
*
10239268 GTAAAATTATCGAAATACCCCCGATGG
1 GTAAAATTATCGAAATACCCTCGATGG
* * *
10239295 GTAAAATTACCGTAATACCCTCGTTAGG
1 GTAAAATTATCGAAATACCCTCGAT-GG
10239323 GTAAA
1 GTAAA
10239328 TGACTGCTAG
Statistics
Matches: 266, Mismatches: 53, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.02
27 247 0.93
28 14 0.05
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGATGG
Found at i:10239109 original size:81 final size:81
Alignment explanation
Indices: 10238971--10239317 Score: 344
Period size: 81 Copynumber: 4.3 Consensus size: 81
10238961 GGCTTGGGCC
* *
10238971 GTAAAATTACCGAAATACTCTCGATGGGTAAAATTA-TAGAAATACCCCCGGAT-GGTAAAATTA
1 GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTA-AAATACCCCC-GATGGGTAAAATTA
** * * *
10239034 -CTGAAATATACTCGACGA
64 TC-GAAATACCCCCGATGG
* * * * *
10239052 GTAAATTTACCGAAATACCCTCGACGAGTAAATTTACCAAAATACCCTCGATGGGTAAAATTATC
1 GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
*
10239117 GAAATACCCCCAGA-GC
66 GAAATACCCCC-GATGG
* * * * * *
10239133 GTAAAATAACCGAAATACCCTCCAT-AGGTAAATTTACTGAAATACCCTCGATAGGTAAAATTAT
1 GTAAAATTACCGAAATACCCTCGATGA-GTAAAATTACTAAAATACCCCCGATGGGTAAAATTAT
* * *
10239197 TGAAATACCCTCAATGG
65 CGAAATACCCCCGATGG
* * ** * * *
10239214 GTAAATTTATCGAAATACTGTTGATGGGAAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
1 GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
10239279 GAAATACCCCCGATGG
66 GAAATACCCCCGATGG
*
10239295 GTAAAATTACCGTAATACCCTCG
1 GTAAAATTACCGAAATACCCTCG
10239318 TTAGGGTAAA
Statistics
Matches: 215, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
80 5 0.02
81 206 0.96
82 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCTCGATGAGTAAAATTACTAAAATACCCCCGATGGGTAAAATTATC
GAAATACCCCCGATGG
Found at i:10239312 original size:54 final size:54
Alignment explanation
Indices: 10238971--10239327 Score: 342
Period size: 54 Copynumber: 6.6 Consensus size: 54
10238961 GGCTTGGGCC
* *
10238971 GTAAAATTACCGAAATACTCTCGATGGGTAAAATTATAGAAATACCCCCGGAT-G
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCC-GATGG
* ** * * * * * * *
10239025 GTAAAATTACTGAAATATACTCGACGAGTAAATTTACCGAAATACCCTCGACGA
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
* * *
10239079 GTAAATTTACCAAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCAGA-GC
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCC-GATGG
* * * * * *
10239133 GTAAAATAACCGAAATACCCTCCATAGGTAAATTTA-CTGAAATACCCTCGATAG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATC-GAAATACCCCCGATGG
** * * ****
10239187 GTAAAATTATTGAAATACCCTCAATGGGTAAATTTATCGAAATACTGTTGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
* ** *
10239241 GAAAAATTACTAAAATACCCCCGATGGGTAAAATTATCGAAATACCCCCGATGG
1 GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
* *
10239295 GTAAAATTACCGTAATACCCTCGTTAGGGTAAA
1 GTAAAATTACCGAAATACCCTCGAT-GGGTAAA
10239328 TGACTGCTAG
Statistics
Matches: 241, Mismatches: 56, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
53 5 0.02
54 226 0.94
55 10 0.04
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (54 bp):
GTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGAAATACCCCCGATGG
Found at i:10239484 original size:27 final size:26
Alignment explanation
Indices: 10239454--10239511 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
10239444 GAAGTACTAA
10239454 TACTGGTGGCTCTGCCACA-ACTACTG
1 TACTGGTGGCTCTGCCACATA-TACTG
*
10239480 TTACTGGTGGCTTTGCCACATATACTG
1 -TACTGGTGGCTCTGCCACATATACTG
10239507 TACTG
1 TACTG
10239512 TAGCTTTGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 5 0.17
27 23 0.79
28 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (26 bp):
TACTGGTGGCTCTGCCACATATACTG
Found at i:10245000 original size:623 final size:623
Alignment explanation
Indices: 10243814--10245062 Score: 2498
Period size: 623 Copynumber: 2.0 Consensus size: 623
10243804 TGTTCAACAG
10243814 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
1 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
10243879 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
66 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
10243944 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
131 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
10244009 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
196 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
10244074 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
261 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
10244139 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
326 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
10244204 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
391 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
10244269 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
456 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
10244334 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
521 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
10244399 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
586 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
10244437 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
1 GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
10244502 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
66 TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
10244567 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
131 CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
10244632 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
196 GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
10244697 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
261 TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
10244762 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
326 AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
10244827 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
391 AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
10244892 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
456 AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
10244957 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
521 GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
10245022 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
586 CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
10245060 GGT
1 GGT
10245063 GCACAACAAT
Statistics
Matches: 626, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
623 626 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (623 bp):
GGTCAAGCATCATCTTCTACCTCCATTGAAGCCTTGTTGAAGGAATATATGGCCAAGAATGATGC
TCTAATTCAAATTCAGGCTGCGTCCCTTAGAGCTCTTGAGAATCAAGTGGGGCAGATAATGAATT
CTTTAAATTTGAGGCCACAAGGAGCATTGCCAAGCGATACCAAGAATTCAAGAACACAAGGGAAG
GAAAAGTGCAAGGCCATCACTTTCAAAAGTGGGACACAGTTGGATGATGTTTTTCAAGACACCAA
TGTAGAAGATGACAAACTCAACCATGGAAATAATTCAGAACAATTTAAAACAATAACTGCATCTG
AAAAAGGGTAAACAGAAGAATGTTACAGCATAATTAGATCATGTTGGCAGCAAAAATATCAGAGC
AAAATAATATCAACAACCTAAAGGACGATCACCTTTACCTTTTCCTCAGTGATTCCATAACTCTA
AAAAAGATGTCTAGATCAAAAGGCTTTTGGATGTTTTGAAGCAACTCCACATTAACATACCACTA
GTACAAGCTTTGGAGCATATGCCCAATTATGTGAAGTTTATGAACGATATATTGTCAAAAAAGCA
CTGATTAGGAGAATTTGAGACAGTTACTCTCACTGAAT
Found at i:10259695 original size:27 final size:27
Alignment explanation
Indices: 10259640--10259748 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 27
10259630 TAGCAGTCAA
* *
10259640 TTTACCCTATTG-GGGTATTTTGGTCAT
1 TTTACCCT-TTGAGGGTATTTCGGTAAT
*
10259667 TTTACCCTTTGAGGGTACTTCGGTAAT
1 TTTACCCTTTGAGGGTATTTCGGTAAT
* * *
10259694 TTTACTC-TTCAGGGTATTTCGATAAT
1 TTTACCCTTTGAGGGTATTTCGGTAAT
* * **
10259720 TTTATCCTTTGGGGGTATTTTAGTAAT
1 TTTACCCTTTGAGGGTATTTCGGTAAT
10259747 TT
1 TT
10259749 AACAACCTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
26 24 0.36
27 42 0.64
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.48
Consensus pattern (27 bp):
TTTACCCTTTGAGGGTATTTCGGTAAT
Found at i:10264735 original size:19 final size:19
Alignment explanation
Indices: 10264676--10264735 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
10264666 GTACATTCTC
* *
10264676 TTTTC-TTTACATGTTTAT
1 TTTTCGTTTTCATTTTTAT
* *
10264694 TTCTT-GTTTTCAATTTTAG
1 TT-TTCGTTTTCATTTTTAT
10264713 TTTTCGTTTTCATTTTTAT
1 TTTTCGTTTTCATTTTTAT
10264732 TTTT
1 TTTT
10264736 TTTGTTTGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
18 4 0.12
19 29 0.88
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTCGTTTTCATTTTTAT
Found at i:10265990 original size:18 final size:18
Alignment explanation
Indices: 10265960--10266002 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
10265950 ATTTTAAGTC
*
10265960 ATTTGTTTATTTTTC-TT
1 ATTTATTTATTTTTCGTT
10265977 ATTTATTTATTTTTCGTT
1 ATTTATTTATTTTTCGTT
10265995 ATTTATTT
1 ATTTATTT
10266003 TTATGTCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTATTTATTTTTCGTT
Found at i:10269236 original size:41 final size:41
Alignment explanation
Indices: 10269191--10269268 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
10269181 ACTAATTGCA
* *
10269191 TCGATGCATTGACTTGGGTATCGATACCTCA-GCCAATGGTG
1 TCGATACATTAACTTGGGTATCGATACC-CATGCCAATGGTG
10269232 TCGATACATTAACTTGGGTATCGATACCCATGCCAAT
1 TCGATACATTAACTTGGGTATCGATACCCATGCCAAT
10269269 TATTGATACC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (41 bp):
TCGATACATTAACTTGGGTATCGATACCCATGCCAATGGTG
Found at i:10270958 original size:43 final size:43
Alignment explanation
Indices: 10270910--10271206 Score: 382
Period size: 43 Copynumber: 6.9 Consensus size: 43
10270900 GTTTTTAGAA
*
10270910 AAAAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* *
10270953 AAAAACGCCGCTATAGATCAAGAGCTTTAGCGGCGCTTTTTCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * * *
10270996 ACAAACGCCGCTATAGATCACA-AGCTTTAGCGGTGCTTTTTCC
1 AAAAACGCCGCTATAGATCA-AGACCTTTAGCGGCGCTTTTCCC
* *
10271039 ACAAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * * *
10271082 ACAAACGCTGCTATAGATCAAGACCTTTAGCAGTGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * * *
10271125 AAAAACGTCACTATAGCTCAGGACCTTTAGCGGCGCTTTT-CC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
* * *
10271167 AACAAACACCGCTATAGCTCAAGACCTTTAGCGACGCTTT
1 AA-AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT
10271207 GATTACAAAC
Statistics
Matches: 225, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.02
43 220 0.98
44 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCC
Found at i:10271314 original size:16 final size:16
Alignment explanation
Indices: 10271295--10271328 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10271285 AAATATTAAA
10271295 TATTAAAATAAAAAAT
1 TATTAAAATAAAAAAT
*
10271311 TATTAATATAAAAAAT
1 TATTAAAATAAAAAAT
10271327 TA
1 TA
10271329 ATTAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATAAAAAAT
Found at i:10271326 original size:23 final size:22
Alignment explanation
Indices: 10271283--10271324 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10271273 AAAAACATTT
*
10271283 AAAAATATTAAATATTAAAATA
1 AAAAATATTAAATATAAAAATA
10271305 AAAAATTATT-AATATAAAAA
1 AAAAA-TATTAAATATAAAAA
10271325 ATTAATTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAATATTAAATATAAAAATA
Found at i:10272724 original size:40 final size:41
Alignment explanation
Indices: 10272680--10272792 Score: 106
Period size: 40 Copynumber: 2.8 Consensus size: 41
10272670 GCGTTTGGAT
10272680 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGC-ACTTTAG
1 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCGACTTTAG
* * * * * ** *
10272720 AAAAAACGCCACTAAAGATCCAGTATTAGCGGCGTTTTTTG
1 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCGACTTTAG
* * *
10272761 -GAAAATGCCGCTAAAAAT-GAGCATTAGTGGCG
1 AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCG
10272793 TTTTCCAAAA
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
39 11 0.19
40 42 0.74
41 4 0.07
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (41 bp):
AAAAAATGCCGCTAAAAATCAAGCATTAGCGGCGACTTTAG
Found at i:10272919 original size:41 final size:41
Alignment explanation
Indices: 10272852--10273128 Score: 324
Period size: 41 Copynumber: 6.8 Consensus size: 41
10272842 GAGTTTTCAA
*
10272852 GGCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* *
10272893 GGCTTTAGCGGTGTTTTTGAAGAAGTGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* * * * *
10272934 TGCTTTAGCGACGTTTCTGAAAAGGCGCCGCTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* * * *
10272975 GGCTTTAGCGGCGTTTTTGAAGAAGCGTCGTTAATGCTCTG
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
* * *
10273016 GGCTTTAGCGGCATTTTTTTAAAAAGTGTCGCTAATGCTC-G
1 GGCTTTAGCGGC-GTTTTTGAAAAAGTGCCGCTAATGCTCTG
** * *
10273057 GGTCTTTAGCGATGTTTTTGAAAAAGCGCCGCTATTGCTCT-
1 GG-CTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
***
10273098 ATTTTTAGCGGCGTTTTTGAAAAAGTGCCGC
1 GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGC
10273129 AAAAATTATT
Statistics
Matches: 198, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
40 25 0.13
41 143 0.72
42 30 0.15
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (41 bp):
GGCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCTG
Found at i:10272991 original size:82 final size:82
Alignment explanation
Indices: 10272853--10273128 Score: 358
Period size: 82 Copynumber: 3.4 Consensus size: 82
10272843 AGTTTTCAAG
10272853 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
1 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
*
10272918 TGCCGCTAATGCTCTGT
66 CGCCGCTAATGCTCTGT
* * * *
10272935 GCTTTAGCGACGTTTCTGAAAAGGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAAGAAG
1 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
* * *
10273000 CGTCGTTAATGCTCTGG
66 CGCCGCTAATGCTCTGT
* * * * * *
10273017 GCTTTAGCGGCATTTTTTTAAAAAGTGTCGCTAATGCTC-GGGTCTTTAGCGATGTTTTTGAAAA
1 GCTTTAGCGGC-GTTTCTGAAAAAGTGCCGCTAATGCTCTGGG-CTTTAGCGGTGTTTTTGAAGA
* *
10273081 AGCGCCGCTATTGCTCTAT
64 AGCGCCGCTAATGCTCTGT
* *
10273100 -TTTTAGCGGCGTTTTTGAAAAAGTGCCGC
1 GCTTTAGCGGCGTTTCTGAAAAAGTGCCGC
10273129 AAAAATTATT
Statistics
Matches: 165, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
81 16 0.10
82 96 0.58
83 53 0.32
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.34
Consensus pattern (82 bp):
GCTTTAGCGGCGTTTCTGAAAAAGTGCCGCTAATGCTCTGGGCTTTAGCGGTGTTTTTGAAGAAG
CGCCGCTAATGCTCTGT
Found at i:10277055 original size:96 final size:94
Alignment explanation
Indices: 10276931--10278062 Score: 1454
Period size: 96 Copynumber: 11.8 Consensus size: 94
10276921 GATAATTGTG
10276931 ATGTG-AA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
10276994 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCAATGTGATGA
*
10277023 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-A
** ** * * *
10277088 TGAATGTGA-AAGTGTATATATATGTGATAAGGCCTAATGGCCG
63 T--ATGTGATAAG-G--CCTA-ATG-GCCAATG--TGAT-G--A
* *
10277131 ATGTGATGAA-TGTGA-A-A-GTGTATATATGTG-ATAAGGCCTAATAGCCGATGTGATGAATGT
1 ATGTGA--AAGTGT-ATATATGTG-ATA-A-G-GCCTAATG-------GCCGATGTGATGAATGT
* *
10277191 GAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
52 GAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
10277234 ATGTGAAAGTGTATATATGTG---A----TAA-GGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
10277291 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCAATGTGATGA
10277320 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
10277385 ATCTGTGATGAGGCCTAATGGCCGATGTGATGA
64 A--TGTGATAAGGCCTAATGGCCAATGTGATGA
*
10277418 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
10277483 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCAATGTGATGA
10277512 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
10277577 ATGTGATCAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
10277608 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
10277673 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCAATGTGATGA
10277702 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
10277767 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
10277800 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
10277865 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
10277896 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
10277961 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCAATGTGATGA
* * * * * * *
10277990 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGA-AGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTA-ATGGCCGATGTGATGAATGTGAAAGTGTATAT
10278053 ATGTGATAAG
64 ATGTGATAAG
10278063 TCCCGAAGGG
Statistics
Matches: 933, Mismatches: 51, Indels: 110
0.85 0.05 0.10
Matches are distributed among these distances:
86 68 0.07
88 10 0.01
91 1 0.00
92 5 0.01
93 5 0.01
94 229 0.25
95 4 0.00
96 409 0.44
97 2 0.00
98 87 0.09
99 8 0.01
101 4 0.00
102 7 0.01
103 11 0.01
104 3 0.00
105 7 0.01
106 8 0.01
107 3 0.00
108 15 0.02
109 6 0.01
110 4 0.00
112 7 0.01
113 2 0.00
114 2 0.00
115 26 0.03
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:10277059 original size:49 final size:47
Alignment explanation
Indices: 10276931--10278062 Score: 1536
Period size: 47 Copynumber: 23.6 Consensus size: 47
10276921 GATAATTGTG
10276931 ATGTG-AA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10276976 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277023 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* ** * **
10277072 ATGTGAAAGTGTGTGATGAATGTGA-AAGTGTATATATATGTGATAAGGCCTAATG-GCCGA
1 ATGTGAAAGTGTAT-AT--ATGTGATAAG-G----CCTA----AT--GGCC-GATGTGATGA
* *
10277132 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 -ATG-------TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277187 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277234 ATGTGAAAGTGTATATATGTG---A----TAA-GGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10277273 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277320 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277369 ATGTGAAAGTGTATATATCTGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277418 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10277465 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277512 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277561 ATGTGAAAGTGTATATATGTGATCAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277608 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10277655 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277702 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277751 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277800 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10277847 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277896 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10277943 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
10277990 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGA-AGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTA-ATGGCCGATGTGATGA
*
10278037 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
10278063 TCCCGAAGGG
Statistics
Matches: 986, Mismatches: 51, Indels: 97
0.87 0.04 0.09
Matches are distributed among these distances:
39 35 0.04
40 3 0.00
42 1 0.00
44 1 0.00
45 5 0.01
46 6 0.01
47 546 0.55
48 5 0.01
49 324 0.33
50 7 0.01
54 7 0.01
55 6 0.01
57 2 0.00
58 2 0.00
60 7 0.01
61 7 0.01
65 7 0.01
66 3 0.00
67 2 0.00
68 10 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:10277088 original size:19 final size:19
Alignment explanation
Indices: 10277064--10277102 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
10277054 TAATGGCCGA
10277064 TGTGATGAATGTGAAAGTG
1 TGTGATGAATGTGAAAGTG
10277083 TGTGATGAATGTGAAAGTG
1 TGTGATGAATGTGAAAGTG
10277102 T
1 T
10277103 ATATATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (19 bp):
TGTGATGAATGTGAAAGTG
Found at i:10277094 original size:68 final size:68
Alignment explanation
Indices: 10277015--10277151 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
10277005 GAATGGCCAA
10277015 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
10277080 GTG
66 GTG
10277083 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
10277148 GTG
66 GTG
10277151 T
1 T
10277152 ATATATGTGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.32, C:0.06, G:0.31, T:0.31
Consensus pattern (68 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTG
Found at i:10277095 original size:115 final size:114
Alignment explanation
Indices: 10276968--10277198 Score: 401
Period size: 115 Copynumber: 2.0 Consensus size: 114
10276958 TAATGGCCGA
10276968 TGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
10277032 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 TG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* *
10277083 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
10277148 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
65 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
10277198 T
1 T
10277199 ATATATGTGA
Statistics
Matches: 111, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
115 66 0.59
117 45 0.41
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (114 bp):
TGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
Found at i:10277248 original size:143 final size:141
Alignment explanation
Indices: 10277083--10278062 Score: 1548
Period size: 143 Copynumber: 6.9 Consensus size: 141
10277073 TGTGAAAGTG
10277083 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
10277148 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
64 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
10277213 GCCTAATGGCCGA
129 GCCTAATGGCCGA
10277226 TGTGATGAATGTGAAAGTGTATATATGTG---A----TAA-GGCCGATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
10277283 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
66 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
10277348 GCCTAATGGCCGA
129 GCCTAATGGCCGA
*
10277361 TGTGATGAATGTGAAAGTGTATATATCTGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
10277426 GTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* *
10277491 GCCGAATGGCCAA
129 GCCTAATGGCCGA
10277504 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* *
10277569 GTGTATATATGTGATCAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAG
64 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
10277634 GCCTAATGGCCGA
129 GCCTAATGGCCGA
* *
10277647 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
10277712 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
66 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATA
*
10277777 AGGCCTAATGGCCAA
127 AGGCCTAATGGCCGA
10277792 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
10277857 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
10277922 GCCTAATAGCCGA
129 GCCTAATGGCCGA
*
10277935 TGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * * * * *
10278000 GTATATATGTGA-CAGAGCCGAGA-AGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTATATATGTGATAAG-GCCTA-ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
10278063 TCCCGAAGGG
Statistics
Matches: 786, Mismatches: 31, Indels: 42
0.92 0.04 0.05
Matches are distributed among these distances:
133 69 0.09
134 3 0.00
135 52 0.07
137 4 0.01
138 1 0.00
140 3 0.00
141 105 0.13
142 1 0.00
143 331 0.42
144 3 0.00
145 214 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
CTAATGGCCGA
Found at i:10280258 original size:38 final size:38
Alignment explanation
Indices: 10280194--10280268 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
10280184 AATCCGAGTT
*
10280194 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
10280232 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
10280269 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:10280381 original size:40 final size:40
Alignment explanation
Indices: 10280322--10280503 Score: 285
Period size: 40 Copynumber: 4.6 Consensus size: 40
10280312 AGGTCTCGAC
10280322 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
10280361 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
10280401 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
10280441 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
10280481 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
10280504 CCGGACTAAG
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 4 0.03
40 125 0.97
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:10280572 original size:96 final size:96
Alignment explanation
Indices: 10280408--10280599 Score: 357
Period size: 96 Copynumber: 2.0 Consensus size: 96
10280398 AGTGATGTAT
*
10280408 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
*
10280473 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
*
10280504 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
10280569 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGATGTATCCGGACTAAGTTCCGA
10280600 AGAGCATTCG
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (96 bp):
CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTC
GTGCTAGTGATGTATCCGGACTAAGTTCCGA
Found at i:10280617 original size:136 final size:136
Alignment explanation
Indices: 10280381--10280636 Score: 388
Period size: 136 Copynumber: 1.9 Consensus size: 136
10280371 GGCTAAGTCC
* * * *
10280381 CGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAATCCCAAAGAGCATTCGTGCTAGTGATAT
* * *
10280446 ATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGTTGTATCCG-GACTAAGTTCCGACCGGAC
66 ATCCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAGTTCCGACCGGAC
10280510 TAAGTTT
130 TAAGTTT
* * *
10280517 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCTAGTGATGT
1 CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAATCCCAAAGAGCATTCGTGCTAGTGATAT
* *
10280582 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTC
66 ATCCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTC
10280637 TGAAGAGCAT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
136 106 0.99
137 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (136 bp):
CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAATCCCAAAGAGCATTCGTGCTAGTGATAT
ATCCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCCGACCGGACT
AAGTTT
Found at i:10280644 original size:176 final size:176
Alignment explanation
Indices: 10280341--10280667 Score: 564
Period size: 176 Copynumber: 1.9 Consensus size: 176
10280331 GGCTAAGTCC
* * *
10280341 CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCTAGTGATGT
10280406 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
66 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
*
10280471 TCGTGCTAGTGTTGTATCCGGACTAAGTTCCGACCGGACTAAGTTT
131 TCGTGCTAGTGTTATATCCGGACTAAGTTCCGACCGGACTAAGTTT
*
10280517 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCGTGCTAGTGATGT
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCTAGTGATGT
* * * *
10280582 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCTGAAGAGCAT
66 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
*
10280647 TCGTGCTGGTGTTATATCCGG
131 TCGTGCTAGTGTTATATCCGG
10280668 GCTAGGTCCC
Statistics
Matches: 141, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
176 141 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (176 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCAAAGAGCATTCATGCTAGTGATGT
ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCAT
TCGTGCTAGTGTTATATCCGGACTAAGTTCCGACCGGACTAAGTTT
Found at i:10280697 original size:40 final size:40
Alignment explanation
Indices: 10280517--10280685 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
10280507 GACTAAGTTT
*
10280517 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
* * * *
10280557 CAAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
* *
10280597 CGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
* * * *
10280637 TGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCC
1 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
10280677 CGAAGAGCA
1 CGAAGAGCA
10280686 ATCATGCTGG
Statistics
Matches: 113, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
Found at i:10284336 original size:49 final size:49
Alignment explanation
Indices: 10284276--10285324 Score: 1318
Period size: 47 Copynumber: 21.6 Consensus size: 49
10284266 GATAATTGTG
10284276 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10284323 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10284370 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* ** * * *
10284419 ATGTGAAAGTGTGTGATGA-ATGTGA-AAGTGTATATATATG-TGATAAG-GCCT-A
1 ATGTGAAAGTGTAT-AT-ATATGTGATAAG-GCCTA-AT-GGCCGAT--GTG-ATGA
* * * * * * * *
10284471 ATGGCGGATGTG-ATGAATGTGAAAGTGTATATATGTG-ATAA-GGCCTAATAGCCGATGTGATG
1 AT-GTGAAAGTGTAT--ATAT--ATGTG-ATA-A-G-GCCTAATGGCC-GAT-G-TGAT-----G
10284533 A
49 A
*
10284534 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10284581 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10284628 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10284677 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10284726 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10284773 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10284822 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10284869 ATGTGAAAGTGTATATATATG-G-TGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
10284916 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10284963 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
10285012 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10285061 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10285110 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10285159 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
10285206 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
10285253 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
10285300 ATGTGAAAGTGTATA-A-ATGTGATAA
1 ATGTGAAAGTGTATATATATGTGATAA
10285325 CTCCCGAAGG
Statistics
Matches: 895, Mismatches: 60, Indels: 93
0.85 0.06 0.09
Matches are distributed among these distances:
45 8 0.01
46 3 0.00
47 400 0.45
48 5 0.01
49 390 0.44
50 11 0.01
51 6 0.01
52 9 0.01
53 12 0.01
54 6 0.01
55 10 0.01
56 5 0.01
57 9 0.01
58 5 0.01
59 6 0.01
61 1 0.00
62 6 0.01
63 3 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:10284346 original size:96 final size:96
Alignment explanation
Indices: 10284276--10285324 Score: 1317
Period size: 96 Copynumber: 10.8 Consensus size: 96
10284266 GATAATTGTG
10284276 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
10284339 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* *
10284370 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTGTGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-A
** ** * * *
10284435 TGAATGTGA-AAGTGTATATATATGTGATAAGGCCTAATGGCGG
65 T--ATGTGATAAG-G--CCTA-ATG-GCCAATG--TGAT---GA
* * *
10284478 ATGTGATGAA-TGT-GA-A-A-GTGTATATATGTG-ATAA-GGCCTAATAGCCGATGTGATGAAT
1 ATGTGA--AAGTGTATATATATGTG-ATA-A-G-GCCTAATGGCC-GAT----G-TG--ATGAAT
* *
10284536 GTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
52 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
* *
10284581 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
10284644 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
10284677 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
10284742 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
10284773 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
10284838 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
10284869 ATGTGAAAGTGTATATATATG-G-TGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
10284932 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
10284963 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
10285028 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
10285061 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
10285126 ATATGTGATAAGGCCTAATGGTCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
10285159 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
10285222 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* * * * * *
10285253 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
10285315 AATGTGATAA
65 TATGTGATAA
10285325 CTCCCGAAGG
Statistics
Matches: 859, Mismatches: 51, Indels: 90
0.86 0.05 0.09
Matches are distributed among these distances:
93 2 0.00
94 203 0.24
95 4 0.00
96 334 0.39
97 3 0.00
98 189 0.22
99 7 0.01
100 1 0.00
101 10 0.01
102 11 0.01
103 15 0.02
104 3 0.00
105 6 0.01
106 7 0.01
107 6 0.01
108 17 0.02
109 7 0.01
110 4 0.00
112 8 0.01
113 4 0.00
114 2 0.00
115 16 0.02
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:10284438 original size:19 final size:19
Alignment explanation
Indices: 10284411--10284449 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
10284401 TAATGGCCGA
*
10284411 TGTGGTGAATGTGAAAGTG
1 TGTGATGAATGTGAAAGTG
10284430 TGTGATGAATGTGAAAGTG
1 TGTGATGAATGTGAAAGTG
10284449 T
1 T
10284450 ATATATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.33
Consensus pattern (19 bp):
TGTGATGAATGTGAAAGTG
Found at i:10284441 original size:68 final size:68
Alignment explanation
Indices: 10284362--10284498 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
10284352 GAATGGCCAA
*
10284362 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
10284427 GTG
66 GTG
*
10284430 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCGGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
10284495 GTG
66 GTG
10284498 T
1 T
10284499 ATATATGTGA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.31, C:0.05, G:0.32, T:0.31
Consensus pattern (68 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTG
Found at i:10284441 original size:115 final size:114
Alignment explanation
Indices: 10284315--10284545 Score: 383
Period size: 115 Copynumber: 2.0 Consensus size: 114
10284305 TAATGGCCGA
10284315 TGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* *
10284379 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
66 TG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* **
10284430 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCGGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
10284495 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
65 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
10284545 T
1 T
10284546 ATATATGTGA
Statistics
Matches: 109, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
115 65 0.60
117 44 0.40
ACGTcount: A:0.32, C:0.06, G:0.31, T:0.30
Consensus pattern (114 bp):
TGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
Found at i:10284467 original size:164 final size:160
Alignment explanation
Indices: 10284276--10284592 Score: 544
Period size: 164 Copynumber: 2.0 Consensus size: 160
10284266 GATAATTGTG
10284276 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
10284341 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
*
10284406 GCCGATGTGGTGAATGTGAAAGTGTGTGATGA
129 GCCGATGTGATGAATGTGAAAGTGTGTGATGA
*
10284438 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCGGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
10284503 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
64 ATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
10284568 GCCGATGTGATGAATGTGAAAGTGT
129 GCCGATGTGATGAATGTGAAAGTGT
10284593 ATATATGTGA
Statistics
Matches: 147, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
162 51 0.35
163 2 0.01
164 94 0.64
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (160 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTGTGATGA
Found at i:10287038 original size:15 final size:14
Alignment explanation
Indices: 10287012--10287051 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
10287002 ATTAATTATC
10287012 ATTATAGTTTAGGG
1 ATTATAGTTTAGGG
*
10287026 ATTATAGGTTTAGGT
1 ATTATA-GTTTAGGG
*
10287041 ATTATTGTTTA
1 ATTATAGTTTA
10287052 TGGTTTACGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (14 bp):
ATTATAGTTTAGGG
Found at i:10287538 original size:20 final size:21
Alignment explanation
Indices: 10287504--10287543 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10287494 GCCTTGTTTT
10287504 CCCTAAATTTCCCCCCTAAAC
1 CCCTAAATTTCCCCCCTAAAC
*
10287525 CCCT-AATTTTCCCCCTAAA
1 CCCTAAATTTCCCCCCTAAA
10287544 ATTGGTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (21 bp):
CCCTAAATTTCCCCCCTAAAC
Found at i:10287677 original size:24 final size:24
Alignment explanation
Indices: 10287650--10287698 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
10287640 TCTCAACCAC
10287650 CGTCTTTGTTTTTCTCTCATTTAT
1 CGTCTTTGTTTTTCTCTCATTTAT
10287674 CGTCTTTGTTTTTCTCTCATTTAT
1 CGTCTTTGTTTTTCTCTCATTTAT
10287698 C
1 C
10287699 CGGTCGGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.22, G:0.08, T:0.61
Consensus pattern (24 bp):
CGTCTTTGTTTTTCTCTCATTTAT
Found at i:10291786 original size:35 final size:34
Alignment explanation
Indices: 10291735--10291800 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
10291725 TAATTGTGTT
10291735 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATT-TAAATTTAAATTC
* *
10291770 ATTAATTT-TTATTTTTATATTTAGATTTAAA
1 ATTAATTTATTA-TTTTAAATTTAAATTTAAA
10291801 GTTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 12 0.43
35 16 0.57
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (34 bp):
ATTAATTTATTATTTTAAATTTAAATTTAAATTC
Found at i:10291915 original size:17 final size:17
Alignment explanation
Indices: 10291883--10291926 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
10291873 TCATAGAAAT
*
10291883 AAATATTATTTGAAAAA
1 AAATATTTTTTGAAAAA
* *
10291900 AAATATTTTTTTAAAAG
1 AAATATTTTTTGAAAAA
*
10291917 ATATATTTTT
1 AAATATTTTT
10291927 AGCGGCGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (17 bp):
AAATATTTTTTGAAAAA
Found at i:10292029 original size:43 final size:43
Alignment explanation
Indices: 10291924--10292055 Score: 178
Period size: 43 Copynumber: 3.1 Consensus size: 43
10291914 AAGATATATT
**
10291924 TTTAGCGGCGTTTGTATGAAAAGCGCCGTTAAAGGTCTAT--TC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTC-ATGGTC
* *
10291966 TATAGCGGCGTTTGTGGGAAAAGCGTCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTC
* * *
10292009 TTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTC
10292052 TTTA
1 TTTA
10292056 ATGGTGTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.03
42 33 0.42
43 44 0.56
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTC
Found at i:10294750 original size:22 final size:24
Alignment explanation
Indices: 10294713--10294756 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
10294703 AATAACTTAG
10294713 GGAAATTTAGGGGAAACGAAGTTA
1 GGAAATTTAGGGGAAACGAAGTTA
*
10294737 GGAAA-TT-GGGGAAATGAAGT
1 GGAAATTTAGGGGAAACGAAGT
10294757 CGGGGAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 2 0.11
24 5 0.26
ACGTcount: A:0.41, C:0.02, G:0.36, T:0.20
Consensus pattern (24 bp):
GGAAATTTAGGGGAAACGAAGTTA
Found at i:10295639 original size:21 final size:21
Alignment explanation
Indices: 10295571--10295646 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
10295561 AACCTTAAAT
* * *
10295571 CACTAACTCTTAACCTCTAAC
1 CACTAACCCCTAACCCCTAAC
*
10295592 CCCTAACCCCTAACCCCTAAC
1 CACTAACCCCTAACCCCTAAC
*
10295613 CCCTAACCCCTAACCCCTAAC
1 CACTAACCCCTAACCCCTAAC
* *
10295634 TACTAAGCCCTAA
1 CACTAACCCCTAA
10295647 ACCTTATTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.32, C:0.47, G:0.01, T:0.20
Consensus pattern (21 bp):
CACTAACCCCTAACCCCTAAC
Found at i:10295646 original size:7 final size:7
Alignment explanation
Indices: 10295581--10295633 Score: 97
Period size: 7 Copynumber: 7.6 Consensus size: 7
10295571 CACTAACTCT
*
10295581 TAACCTC
1 TAACCCC
10295588 TAACCCC
1 TAACCCC
10295595 TAACCCC
1 TAACCCC
10295602 TAACCCC
1 TAACCCC
10295609 TAACCCC
1 TAACCCC
10295616 TAACCCC
1 TAACCCC
10295623 TAACCCC
1 TAACCCC
10295630 TAAC
1 TAAC
10295634 TACTAAGCCC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.30, C:0.53, G:0.00, T:0.17
Consensus pattern (7 bp):
TAACCCC
Found at i:10295768 original size:66 final size:69
Alignment explanation
Indices: 10295622--10295770 Score: 207
Period size: 66 Copynumber: 2.2 Consensus size: 69
10295612 CCCCTAACCC
* * *
10295622 CTAACCCCTAACTACTAAGCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCT
1 CTAAACCCTAAC-CCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCT
10295687 AAACG
65 AAACG
* *
10295692 CTAAAACCTAACCCTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACA-ACTAATTAATCTA
1 CTAAACCCTAACCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTA
10295754 AAC-
66 AACG
10295757 CTTAAACCCTAACC
1 C-TAAACCCTAACC
10295771 TGACATTGAA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
65 1 0.01
66 27 0.38
67 14 0.19
68 1 0.01
69 19 0.26
70 10 0.14
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (69 bp):
CTAAACCCTAACCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTA
AACG
Found at i:10296382 original size:81 final size:80
Alignment explanation
Indices: 10296277--10296471 Score: 246
Period size: 81 Copynumber: 2.4 Consensus size: 80
10296267 AATTTTTTTT
**
10296277 GCGGCACCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAACAACGAGTATTGGAAAACGCCGC
1 GCGGCA-CTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAACAACGAGTATTCAAAAACGCCGC
* *
10296342 TAAAGCTCTGAGCATTA
64 TAAAGCCCCGAGCATTA
* * * ** *
10296359 GCGGCACTTTTTAAAAACGCCGCTAAATGCCCGAGCATTAGCGACGCTTTTTCAAAAACGCCGCT
1 GCGGCACTTTTCAAAAACGCCGCTAAA-GCCCGAGCATTAACAACGAGTATTCAAAAACGCCGCT
*
10296424 TAAGCCCCGAGCATTA
65 AAAGCCCCGAGCATTA
*
10296440 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCC
1 GCGGCACTTTT-CAAAAACGCCGCTAAAGCCC
10296472 CAAAAGATCA
Statistics
Matches: 98, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
81 73 0.74
82 25 0.26
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (80 bp):
GCGGCACTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAACAACGAGTATTCAAAAACGCCGCTA
AAGCCCCGAGCATTA
Found at i:10296433 original size:41 final size:41
Alignment explanation
Indices: 10296285--10296472 Score: 218
Period size: 41 Copynumber: 4.6 Consensus size: 41
10296275 TTGCGGCACC
* * * **
10296285 TTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAACAACGAG
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
* ** * * * *
10296326 TATTGGAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCACT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
10296367 TTTT-AAAAACGCCGCTAAATG-CCCGAGCATTAGCGACGCT
1 TTTTCAAAAACGCCGCTAAA-GCCCCGAGCATTAGCGACGCT
* *
10296407 TTTTCAAAAACGCCGCTTAAGCCCCGAGCATTAGCGGCGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
*
10296448 TTTCCAAAAACGCCGCTAAAGCCCC
1 TTTTCAAAAACGCCGCTAAAGCCCC
10296473 AAAAGATCAG
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 34 0.27
41 90 0.73
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (41 bp):
TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGACGCT
Found at i:10310990 original size:12 final size:12
Alignment explanation
Indices: 10310970--10311011 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
10310960 TTAGGCTGTT
*
10310970 ACACAGCCTAGC
1 ACACGGCCTAGC
10310982 ACACGGCCTAGC
1 ACACGGCCTAGC
*
10310994 ACATGGCCTAGC
1 ACACGGCCTAGC
10311006 ACACGG
1 ACACGG
10311012 GCGTGTGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.29, C:0.38, G:0.24, T:0.10
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:10315101 original size:109 final size:110
Alignment explanation
Indices: 10314910--10315161 Score: 319
Period size: 109 Copynumber: 2.3 Consensus size: 110
10314900 CTAGAGACAA
* * * *
10314910 TAAAAAAAATTTTGGTGCTAGCCA-GTAGATGGCCGGCACCAGGTACAATTTTCAGTTCCCAAGG
1 TAAAAAAAA-TTGGGTGCTGGCCATGTA-ATGGCCGACACCAAGTACAATTTTCAGTTCCCAAGG
* * * *
10314974 CACATTTTTTTTACTTTGGGACACTGATGGCCGGCACTAGTGTA-TT
64 CACATTATTATTACTTTGGAACACTGATGGCCGGCACCAGTGTATTT
* * *
10315020 TAAAAAAAATTGGGTGTTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGGTTCCCAATGCA
1 TAAAAAAAATTGGGTGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCAGTTCCCAAGGCA
* * * *
10315085 TATTATTATTATTTTGGAACACTGATGGTCGGTACCAGTGTATTT
66 CATTATTATTACTTTGGAACACTGATGGCCGGCACCAGTGTATTT
*
10315130 TAAAAAAATTTTGGGTGCTGGCCATGTAATGG
1 TAAAAAAA-ATTGGGTGCTGGCCATGTAATGG
10315162 TAGGCACCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
109 79 0.65
110 22 0.18
111 21 0.17
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (110 bp):
TAAAAAAAATTGGGTGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCAGTTCCCAAGGCA
CATTATTATTACTTTGGAACACTGATGGCCGGCACCAGTGTATTT
Found at i:10315212 original size:111 final size:109
Alignment explanation
Indices: 10314910--10315232 Score: 310
Period size: 109 Copynumber: 2.9 Consensus size: 109
10314900 CTAGAGACAA
* * * * ** * *
10314910 TAAAAAAAATTTTGGTGCTAGCCA-GTAGATGGCCGGCACCAGGTACAATTTTCAG-TTCCCAAG
1 TAAAAAAAA-TTGGGTGCTGGCCATGTA-ATGGCAGACACCAAATACAATTTTC-GCCTCCCAAT
* *
10314973 GCACATTTTTTTTACTTTGGGACACTGATGGCCGGCACTAGTGTATT
63 GCATATTTTTTTTACTTTGGGACACTGATGGCCGGCACCAGTGTATT
* * * **
10315020 TAAAAAAAATTGGGTGTTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGGTTCCCAATGCA
1 TAAAAAAAATTGGGTGCTGGCCATGTAATGGCAGACACCAAATACAATTTTCGCCTCCCAATGCA
* * * * * *
10315085 TATTATTATTATTTTGGAACACTGATGGTCGGTACCAGTGTATTT
66 TATTTTTTTTACTTTGGGACACTGATGGCCGGCACCAGTGTA-TT
* * * * * *
10315130 TAAAAAAATTTTGGGTGCTGGCCATGTAATGGTAGGCACCAAATACAGTTTTTGCCTCCCAATGT
1 TAAAAAAA-ATTGGGTGCTGGCCATGTAATGGCAGACACCAAATACAATTTTCGCCTCCCAATGC
* *
10315195 A-AGTTTTTTTTACTTTGGGACATTGATGGCTGGCACCA
65 ATA-TTTTTTTTACTTTGGGACACTGATGGCCGGCACCA
10315233 CCTTTTTCGG
Statistics
Matches: 175, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
108 1 0.01
109 78 0.45
110 23 0.13
111 73 0.42
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (109 bp):
TAAAAAAAATTGGGTGCTGGCCATGTAATGGCAGACACCAAATACAATTTTCGCCTCCCAATGCA
TATTTTTTTTACTTTGGGACACTGATGGCCGGCACCAGTGTATT
Found at i:10318504 original size:15 final size:15
Alignment explanation
Indices: 10318486--10318517 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10318476 GTAAAAGCTG
10318486 AAAACAATTAAATAA
1 AAAACAATTAAATAA
*
10318501 AAAACAGTTAAATAA
1 AAAACAATTAAATAA
10318516 AA
1 AA
10318518 CAGAAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAACAATTAAATAA
Found at i:10320601 original size:6 final size:6
Alignment explanation
Indices: 10320569--10320614 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
10320559 GTCTACATGC
10320569 AAAAT- AAAAT- AAAATA GAAGGAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA -AA--AATA AAAATA AAAATA AAAATA AAA
10320615 TGTGTAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 10 0.27
6 19 0.51
7 2 0.05
8 2 0.05
9 4 0.11
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:10329669 original size:6 final size:6
Alignment explanation
Indices: 10329648--10329732 Score: 99
Period size: 6 Copynumber: 14.8 Consensus size: 6
10329638 CTTTTTTTTT
*
10329648 CATTT- CATTT- CATTTC CATTTC CATTTC TAATTT- CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC -CATTTC CATTTC CATTTC
**
10329694 CATTTC CATTTC CATTT- CATTAA CATTTC CATTT- CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
10329733 AAATTATATT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
5 23 0.32
6 44 0.62
7 4 0.06
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:10329681 original size:29 final size:28
Alignment explanation
Indices: 10329645--10329752 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 28
10329635 CAACTTTTTT
10329645 TTTC-ATTTCATTTCATTTCCATTTCCA
1 TTTCAATTTCATTTCATTTCCATTTCCA
10329672 TTTCTAATTTCATTTCCATTTCCATTTCCA
1 TTTC-AATTTCATTT-CATTTCCATTTCCA
* *
10329702 TTTCCATTTCATTAACATTTCCATTT-CA
1 TTTCAATTTCATT-TCATTTCCATTTCCA
*
10329730 TTTAAATTAT-ATTT--TTTCCATTT
1 TTTCAATT-TCATTTCATTTCCATTT
10329753 AAATTTAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
25 9 0.13
27 4 0.06
28 11 0.15
29 29 0.41
30 18 0.25
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTCAATTTCATTTCATTTCCATTTCCA
Found at i:10329683 original size:24 final size:23
Alignment explanation
Indices: 10329648--10329732 Score: 111
Period size: 24 Copynumber: 3.7 Consensus size: 23
10329638 CTTTTTTTTT
10329648 CATTT-CATTTCATTTCCATTTC
1 CATTTCCATTTCATTTCCATTTC
*
10329670 CATTTCTAATTTCATTTCCATTTC
1 CATTTC-CATTTCATTTCCATTTC
**
10329694 CATTTCCATTTCCATTT-CATTAA
1 CATTTCCATTT-CATTTCCATTTC
10329717 CATTTCCATTTCATTT
1 CATTTCCATTTCATTT
10329733 AAATTATATT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
22 10 0.18
23 19 0.34
24 27 0.48
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (23 bp):
CATTTCCATTTCATTTCCATTTC
Found at i:10329767 original size:20 final size:20
Alignment explanation
Indices: 10329724--10329799 Score: 57
Period size: 20 Copynumber: 3.6 Consensus size: 20
10329714 TAACATTTCC
10329724 ATTT-CATTTAAA-TTATATT
1 ATTTCCATTTAAATTTA-ATT
*
10329743 TTTTCCATTTAAATTTAATT
1 ATTTCCATTTAAATTTAATT
* *
10329763 ATTTCTCATCTCAATTTTTAATTT
1 ATTTC-CAT-TTAA-ATTTAA-TT
*
10329787 ATTTTCATTTAAA
1 ATTTCCATTTAAA
10329800 CTTTTATTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
19 3 0.07
20 15 0.34
21 6 0.14
22 6 0.14
23 8 0.18
24 6 0.14
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTCCATTTAAATTTAATT
Found at i:10329804 original size:23 final size:21
Alignment explanation
Indices: 10329725--10329813 Score: 74
Period size: 23 Copynumber: 4.1 Consensus size: 21
10329715 AACATTTCCA
*
10329725 TTTCATTTAAATTATATTT-T
1 TTTCATTTAAATTTTATTTAT
* *
10329745 TTCCATTTAAA-TTTAATTAT
1 TTTCATTTAAATTTTATTTAT
* *
10329765 TTCTCATCTCAATTTTTAATTTAT
1 TT-TCAT-TTAAATTTT-ATTTAT
10329789 TTTCATTTAAACTTTTATTTCAT
1 TTTCATTTAAA-TTTTATTT-AT
10329812 TT
1 TT
10329814 CATAATCATC
Statistics
Matches: 53, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
19 5 0.09
20 13 0.25
21 3 0.06
22 10 0.19
23 15 0.28
24 7 0.13
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTCATTTAAATTTTATTTAT
Found at i:10329829 original size:19 final size:19
Alignment explanation
Indices: 10329805--10329841 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10329795 TTAAACTTTT
10329805 ATTTCATTTCATAATCATC
1 ATTTCATTTCATAATCATC
*
10329824 ATTTCATTTCATATTCAT
1 ATTTCATTTCATAATCAT
10329842 TCAACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTCATTTCATAATCATC
Found at i:10329874 original size:14 final size:13
Alignment explanation
Indices: 10329847--10329871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10329837 TTCATTCAAC
10329847 ATTTTTTTCATTA
1 ATTTTTTTCATTA
10329860 ATTTTTTTCATT
1 ATTTTTTTCATT
10329872 TAAATTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTTTCATTA
Found at i:10330061 original size:21 final size:21
Alignment explanation
Indices: 10330019--10330061 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
10330009 TATCAGGGTC
*
10330019 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
10330040 ATTTAAAATTTTTC-TCAATTT
1 ATTTAAAATTTTTCAT-AATTT
10330061 A
1 A
10330062 AATATCATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:10330316 original size:27 final size:26
Alignment explanation
Indices: 10330286--10330558 Score: 106
Period size: 27 Copynumber: 10.9 Consensus size: 26
10330276 AGTTCGTTTC
10330286 AATTATCTTTTTTTTCCATTTAAATTT
1 AATTAT-TTTTTTTTCCATTTAAATTT
* *
10330313 -A--ATTTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
* * * *
10330334 ATATTATCTTTCTTCCCATATAAATTT
1 A-ATTATTTTTTTTTCCATTTAAATTT
* *
10330361 AATT-TTTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
*
10330384 AAATTA-TTTTTTTTCTATTTAAA--T
1 -AATTATTTTTTTTTCCATTTAAATTT
* *
10330408 -ATTA-TTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
*
10330430 AAATTATTTTTTATTCCATTTAAATTT
1 -AATTATTTTTTTTTCCATTTAAATTT
* *
10330457 -A--ATTTTTTTCT-CATTT-CATTT
1 AATTATTTTTTTTTCCATTTAAATTT
* * *
10330478 AAATTATCTTTCTTTCCATTTTAATTTT
1 -AATTATTTTTTTTTCCA-TTTAAATTT
*
10330506 AATT-TTTTTCTCATTT-CATTTAGATTT
1 AATTATTTTT-T--TTTCCATTTAAATTT
*
10330533 AATT-TTTCTTCTCTTTTCATTTAAAT
1 AATTATTT-TT-T-TTTCCATTTAAAT
10330559 GATCTTTCTT
Statistics
Matches: 180, Mismatches: 37, Indels: 57
0.66 0.14 0.21
Matches are distributed among these distances:
20 1 0.01
21 12 0.07
22 22 0.12
23 21 0.12
24 22 0.12
25 29 0.16
26 20 0.11
27 33 0.18
28 17 0.09
29 3 0.02
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (26 bp):
AATTATTTTTTTTTCCATTTAAATTT
Found at i:10330362 original size:48 final size:48
Alignment explanation
Indices: 10330286--10330527 Score: 339
Period size: 49 Copynumber: 5.0 Consensus size: 48
10330276 AGTTCGTTTC
10330286 AATTATCTTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
1 AATTATC-TTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
* * * *
10330335 TATTATCTTTCTTCCCATATAAATTTAATTTTTTTTTCTCATTTCATTTA
1 AATTATCTTTTTTTCCATTTAAATTTAA--TTTTTTTCTCATTTCATTTA
*
10330385 AATTAT-TTTTTTTCTATTTAAATATT-A-TTTTTTCTCATTTCATTTA
1 AATTATCTTTTTTTCCATTTAAAT-TTAATTTTTTTCTCATTTCATTTA
10330431 AATTAT-TTTTTATTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
1 AATTATCTTTTT-TTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
* *
10330479 AATTATCTTTCTTTCCATTTTAATTTTAATTTTTTTCTCATTTCATTTA
1 AATTATCTTTTTTTCCA-TTTAAATTTAATTTTTTTCTCATTTCATTTA
10330528 GATTTAATTT
Statistics
Matches: 173, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
46 32 0.18
47 12 0.07
48 48 0.28
49 54 0.31
50 27 0.16
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (48 bp):
AATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTA
Found at i:10330410 original size:19 final size:21
Alignment explanation
Indices: 10330376--10330424 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
10330366 TTTTTTCTCA
10330376 TTTC-ATTTAAATTATT-TTT
1 TTTCTATTTAAATTATTATTT
10330395 TTTCTATTTAAA-TATTATTT
1 TTTCTATTTAAATTATTATTT
10330415 TTTCTCATTT
1 TTTCT-ATTT
10330425 CATTTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.30
20 15 0.56
21 4 0.15
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTCTATTTAAATTATTATTT
Found at i:10330436 original size:96 final size:95
Alignment explanation
Indices: 10330293--10330527 Score: 332
Period size: 96 Copynumber: 2.4 Consensus size: 95
10330283 TTCAATTATC
*
10330293 TTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTATATTATCTTTCT-TCCCATATAA
1 TTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTAT-TTTCTATCCCATATAA
10330357 ATTTAATTTTTTTTTCTCATTTCATTTAAATTA
65 ATTTAA--TTTTTTTCTCATTTCATTTAAATTA
* * * *
10330390 TTTTTTTTCTATTTAAATATT-A-TTTTTTCTCATTTCATTTAAATTATTTTTTATTCCATTTAA
1 TTTTTTTTCCATTTAAAT-TTAATTTTTTTCTCATTTCATTTAAATTATTTTCTATCCCATATAA
10330453 ATTTAATTTTTTTCTCATTTCATTTAAATTA
65 ATTTAATTTTTTTCTCATTTCATTTAAATTA
* *
10330484 TCTTTCTTTCCATTTTAATTTTAATTTTTTTCTCATTTCATTTA
1 T-TTTTTTTCCA-TTTAAATTTAATTTTTTTCTCATTTCATTTA
10330528 GATTTAATTT
Statistics
Matches: 124, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
94 26 0.21
95 14 0.11
96 45 0.36
97 37 0.30
98 2 0.02
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (95 bp):
TTTTTTTTCCATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATTTTCTATCCCATATAAA
TTTAATTTTTTTCTCATTTCATTTAAATTA
Found at i:10330515 original size:22 final size:22
Alignment explanation
Indices: 10330294--10330526 Score: 112
Period size: 24 Copynumber: 9.9 Consensus size: 22
10330284 TCAATTATCT
*
10330294 TTTTTTTC-CATTTAAATTTAA
1 TTTTTTTCTCATTTAATTTTAA
*
10330315 TTTTTTTCTCATTTCATTTATATTA
1 TTTTTTTCTCATTTAATTT-TA--A
* * * *
10330340 TCTTTCTTCCCATATAAATTTAA
1 T-TTTTTTCTCATTTAATTTTAA
* *
10330363 TTTTTTTTTCTCATTTCATTTAAA
1 --TTTTTTTCTCATTTAATTTTAA
* *
10330387 TTATTTTTTTTCTATTTAAATATT-A
1 -T-TTTTTTCTC-ATTT-AATTTTAA
* *
10330412 -TTTTTTCTCATTTCATTTAAA
1 TTTTTTTCTCATTTAATTTTAA
* *
10330433 TTATTTTTTATTCCATTTAAATTTAA
1 -T-TTTTTT-CT-CATTTAATTTTAA
* *
10330459 TTTTTTTCTCATTTCATTTAAA
1 TTTTTTTCTCATTTAATTTTAA
*
10330481 TTATCTTTCTTTCCATTTTAATTTTAA
1 TT-T-TTT-TCT-CA-TTTAATTTTAA
*
10330508 TTTTTTTCTCATTTCATTT
1 TTTTTTTCTCATTTAATTT
10330527 AGATTTAATT
Statistics
Matches: 157, Mismatches: 34, Indels: 41
0.68 0.15 0.18
Matches are distributed among these distances:
20 3 0.02
21 13 0.08
22 35 0.22
23 9 0.06
24 40 0.25
25 17 0.11
26 29 0.18
27 11 0.07
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTTTCTCATTTAATTTTAA
Found at i:10330590 original size:77 final size:75
Alignment explanation
Indices: 10330302--10330582 Score: 316
Period size: 77 Copynumber: 3.8 Consensus size: 75
10330292 CTTTTTTTTC
* * * *
10330302 CATTTAAATTTAATTTTTTTCTCATTTCATTTATATTATCTTTCTTCCCATATAAATTTAATTTT
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAA--TT
10330367 TTTTTCTCATTT
64 TTTTTCTCATTT
* *
10330379 CATTTAAA-TT-ATTTTTTT-TC---T-ATTTAAA-TAT-TATTTTTTCTCA-TTTCATTTAAAT
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCT-TTCTTTC-CATTTTAATTT-AAT
*
10330434 TATTTTT-T-ATTC
63 T-TTTTTCTCATTT
10330446 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTTAATTT
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAA-TTTAATTT
10330511 TTTTCTCATTT
65 TTTTCTCATTT
* * *
10330522 CATTTAGATTTAATTTTTCTTCTCTTTTCATTTAAATGATCTTTCTTTCCATTTTAATTTA
1 CATTTAAATTTAATTTTT-TTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTA
10330583 CGTTTTTTAC
Statistics
Matches: 173, Mismatches: 13, Indels: 37
0.78 0.06 0.17
Matches are distributed among these distances:
67 11 0.06
68 6 0.03
69 26 0.15
70 12 0.07
71 1 0.01
73 1 0.01
74 16 0.09
75 26 0.15
76 30 0.17
77 44 0.25
ACGTcount: A:0.25, C:0.13, G:0.01, T:0.62
Consensus pattern (75 bp):
CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTT
TTTCTCATTT
Found at i:10334100 original size:113 final size:110
Alignment explanation
Indices: 10333930--10334139 Score: 271
Period size: 113 Copynumber: 1.9 Consensus size: 110
10333920 ACATGGCCCA
* *
10333930 CACCCAAATTTTTTTTAAATACACTGGTGCCGGCCATCAGTGTTCCAAAATATAAAAAA-GATAC
1 CACCCAAATTTTTTTTAAATACACTGGTACCGGCCATCAGTGTTCCAAAATAAAAAAAATG-TAC
* * *
10333994 ATTGGGAGCCGAAAATTGTACTTGGTGCTGGCCATAACATGACCAG
65 ATTGGGAACCGAAAATTGTACCTGGTGCCGGCCATAACATGACCAG
* *
10334040 CACCCAAAATTTTTTTTTAAAATACACTGGTACCGGCCATCAGTG-TCACACAGTAAAAAAAATG
1 CACCC-AAA-TTTTTTTT-AAATACACTGGTACCGGCCATCAGTGTTC-CAAAATAAAAAAAATG
* * *
10334104 TGCCTTGGGAACTGAAAATTGTACCTGGTGCCGGCC
62 TACATTGGGAACCGAAAATTGTACCTGGTGCCGGCC
10334140 GTCTACTGGC
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
110 5 0.06
111 3 0.04
112 10 0.12
113 66 0.78
114 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (110 bp):
CACCCAAATTTTTTTTAAATACACTGGTACCGGCCATCAGTGTTCCAAAATAAAAAAAATGTACA
TTGGGAACCGAAAATTGTACCTGGTGCCGGCCATAACATGACCAG
Found at i:10335938 original size:41 final size:41
Alignment explanation
Indices: 10335867--10336187 Score: 427
Period size: 41 Copynumber: 7.9 Consensus size: 41
10335857 CTTTTATTTT
*
10335867 TCAGGGCTTTAGCGGCGTTTTTCGAA-AAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGC
* *
10335908 TCGGGTCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* *
10335949 TAAGGTCTTTAGCGGCGTTTTTGAAGAAGTGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* * *
10335990 TCGGGTCTTTAGCGGCATTTTTGGAGAAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* * *
10336031 TCAGGTCTTTAGCTGCGTTTTTGGAGAAGCGCCGCTAGTGC
1 TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
*
10336072 TCTGGTCTTTAGCGGCGTTTCTT-AAGAAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTT-TTGAAGAAGCGCCGCTAATGC
*
10336113 TCTGGTCTTTAGCGGCGTTTTTGATA-AAGCGCCGCTAATGC
1 TCAGGTCTTTAGCGGCGTTTTTGA-AGAAGCGCCGCTAATGC
* * *
10336154 TCTA--TTTTTAGCGGCGTTTTTTAAAAAGCGCCGC
1 TC-AGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
10336188 AAAAAATATT
Statistics
Matches: 251, Mismatches: 23, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.00
40 30 0.12
41 217 0.86
42 3 0.01
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.31
Consensus pattern (41 bp):
TCAGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
Found at i:10337288 original size:21 final size:20
Alignment explanation
Indices: 10337254--10337294 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
10337244 TATAGATTTA
*
10337254 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
10337274 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
10337295 AGGAGTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:10337314 original size:21 final size:20
Alignment explanation
Indices: 10337268--10337315 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
10337258 TTATGGTTTA
* * *
10337268 AGGGTTGGGATTTAAGGTTT
1 AGGGTTAGGAGTTAAGATTT
10337288 AGGGGTTAGGAGTTAGAGATTT
1 A-GGGTTAGGAGTTA-AGATTT
10337310 AGGGTT
1 AGGGTT
10337316 TTAAGGGTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (20 bp):
AGGGTTAGGAGTTAAGATTT
Found at i:10338067 original size:22 final size:22
Alignment explanation
Indices: 10338024--10338067 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10338014 CCCATTTTAG
*
10338024 CCCTAAATTTCCCCCGTGAAAC
1 CCCTAAATTTCCCCCGTAAAAC
*
10338046 CCCTAATTTTCCCTCC-TAAAAC
1 CCCTAAATTTCCC-CCGTAAAAC
10338068 TCTTTTAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.27, C:0.41, G:0.05, T:0.27
Consensus pattern (22 bp):
CCCTAAATTTCCCCCGTAAAAC
Found at i:10338278 original size:9 final size:9
Alignment explanation
Indices: 10338264--10338289 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10338254 TTTCACAAAC
10338264 AGGTTACAG
1 AGGTTACAG
10338273 AGGTTACAG
1 AGGTTACAG
10338282 AGGTTACA
1 AGGTTACA
10338290 ACCATTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.23
Consensus pattern (9 bp):
AGGTTACAG
Found at i:10338418 original size:20 final size:19
Alignment explanation
Indices: 10338377--10338422 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10338367 CACACTTATC
*
10338377 TTTTTTTTATAGTAATTGA
1 TTTTTTTTATAGTAATTAA
**
10338396 TTTTTTTTATAGATTTTTAA
1 TTTTTTTTATAG-TAATTAA
10338416 TTTTTTT
1 TTTTTTT
10338423 AAATAGAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTTTTTATAGTAATTAA
Found at i:10340770 original size:43 final size:43
Alignment explanation
Indices: 10340731--10340918 Score: 277
Period size: 43 Copynumber: 4.4 Consensus size: 43
10340721 CATTTGTTTG
* * * *
10340731 AAAAGCGCCGTTAAAAGCCATGGTCTTTAGCGGTGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
* * *
10340774 AAAAGTGCCACTAAAGGTCATGGTTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
*
10340817 AAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
* * *
10340860 AAAAGCGCCGCTAAAGGTCTTGGTTTTTAGCGGCGTTTGTGGA
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
10340903 AAAAGCGCCGCTAAAG
1 AAAAGCGCCGCTAAAG
10340919 TTAGCGACGC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 132 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGT
Found at i:10343259 original size:26 final size:26
Alignment explanation
Indices: 10343230--10343293 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
10343220 CGACTTATAA
10343230 CTCGTGTGAGCAGACCCATTTCACAG
1 CTCGTGTGAGCAGACCCATTTCACAG
*
10343256 CTCGTGTGAGCAGGCCCATTTCACAG
1 CTCGTGTGAGCAGACCCATTTCACAG
10343282 CTCGTGTGAGCA
1 CTCGTGTGAGCA
10343294 TTGATGTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (26 bp):
CTCGTGTGAGCAGACCCATTTCACAG
Found at i:10346335 original size:14 final size:14
Alignment explanation
Indices: 10346316--10346344 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10346306 TTAGCCCAAT
10346316 ATTATCTTTAAAAA
1 ATTATCTTTAAAAA
10346330 ATTATCTTTAAAAA
1 ATTATCTTTAAAAA
10346344 A
1 A
10346345 CCCTATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTATCTTTAAAAA
Found at i:10350819 original size:47 final size:47
Alignment explanation
Indices: 10350766--10351106 Score: 547
Period size: 47 Copynumber: 7.2 Consensus size: 47
10350756 AATTCTAAAT
10350766 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
10350813 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
10350860 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
10350907 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
10350955 TATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
10351004 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
10351051 TGTGACGTGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
10351098 TGTGATAAG
1 TGTGATAAG
10351107 TCCCGAAGGG
Statistics
Matches: 274, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 183 0.67
48 45 0.16
49 46 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Done.