Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 35 of 228
Found at i:10660800 original size:17 final size:17
Alignment explanation
Indices: 10660759--10660811 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 17
10660749 ACTTCATTCC
10660759 ATTCTTATTTTTATAAACT
1 ATTCTTATTTTT-TAAA-T
10660778 -TT-TTATTTTTTAAAT
1 ATTCTTATTTTTTAAAT
10660793 ATTCTTATAATTTTTAAAT
1 ATTCTTAT--TTTTTAAAT
10660812 TATTTATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.03
16 6 0.20
17 12 0.40
18 2 0.07
19 9 0.30
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTCTTATTTTTTAAAT
Found at i:10663289 original size:23 final size:23
Alignment explanation
Indices: 10663263--10663325 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 23
10663253 ATTATATATT
*
10663263 AAATATTTTTTTTATTTTTAATC
1 AAATATTTATTTTATTTTTAATC
10663286 AAATATATATATTTTATTTTTAATC
1 AAATAT-T-TATTTTATTTTTAATC
* *
10663311 AAATATATCTTTTAT
1 AAATATTTATTTTAT
10663326 ATATATTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.37
24 1 0.03
25 21 0.60
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (23 bp):
AAATATTTATTTTATTTTTAATC
Found at i:10669391 original size:28 final size:28
Alignment explanation
Indices: 10669351--10669414 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
10669341 AGTTACATTT
10669351 GGAAATGAATGTGGTTTCTCACTTGGTA
1 GGAAATGAATGTGGTTTCTCACTTGGTA
10669379 GGAAATGAATGTGGTTTCTCACTTGGTA
1 GGAAATGAATGTGGTTTCTCACTTGGTA
10669407 GGAAATGA
1 GGAAATGA
10669415 CCTAAGAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (28 bp):
GGAAATGAATGTGGTTTCTCACTTGGTA
Found at i:10673329 original size:17 final size:17
Alignment explanation
Indices: 10673307--10673344 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
10673297 CAGGAGCTCC
*
10673307 TGTTAATAAAATCTGAT
1 TGTTAATAAAATCGGAT
10673324 TGTTAATAAAATCGGAT
1 TGTTAATAAAATCGGAT
10673341 TGTT
1 TGTT
10673345 TTTCGTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (17 bp):
TGTTAATAAAATCGGAT
Found at i:10674347 original size:97 final size:97
Alignment explanation
Indices: 10674181--10674374 Score: 316
Period size: 97 Copynumber: 2.0 Consensus size: 97
10674171 TGATGCACTC
* *
10674181 ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATGAGCAGAAAATGAACAGAACTTCTACCTC
1 ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATAAGCAGAAAATAAACAGAACTTCTACCTC
10674246 AATAGAACAGGCTTTGAAAGCTTCAACTCATT
66 AATAGAACAGGCTTTGAAAGCTTCAACTCATT
* * * *
10674278 ACTCTTGATGAACTTCAGAGCTCCTTGTTGGTCCATAAGCAGAAGATAAACAGAATTTCTACCTC
1 ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATAAGCAGAAAATAAACAGAACTTCTACCTC
**
10674343 AATAGAGTAGGCTTTGAAAGCTTCAACTCATT
66 AATAGAACAGGCTTTGAAAGCTTCAACTCATT
10674375 CTTTCAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (97 bp):
ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATAAGCAGAAAATAAACAGAACTTCTACCTC
AATAGAACAGGCTTTGAAAGCTTCAACTCATT
Found at i:10678351 original size:41 final size:41
Alignment explanation
Indices: 10678179--10678328 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
10678169 TTTAACATAT
*
10678179 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
* * * *
10678220 TCACTGGCACGTAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
* *
10678261 TCACTGGCACTTAGCCTGCTAGG-TTCATAACCTGGTTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTT-ATAACCTGATTCAGA
*
10678302 TCACCGGCACTTAGCCTGCTAGACTTA
1 TCACCGGCACTTAGCCTGCTAGGCTTA
10678329 AAGTCTGAAT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 2 0.02
41 93 0.96
42 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:10678365 original size:82 final size:83
Alignment explanation
Indices: 10678177--10678351 Score: 223
Period size: 82 Copynumber: 2.1 Consensus size: 83
10678167 AATTTAACAT
* *
10678177 ATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACTGGCACGTAGCCTGCTAG
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCACCGGCACGTAGCCTGCTAG
** *
10678242 GTTTATAACCTGATTTAG
66 ACTTATAACCTGAATTAG
* * *
10678260 A-TCACTGGCACTTAGCCTGCTAGG-TTCATAACCTGGTTCAGATCACCGGCACTTAGCCTGCTA
1 ATTCACCGGCACTTAGCCTGCTAGGCTT-ATAACCTGATTCAGATCACCGGCACGTAGCCTGCTA
*
10678323 GACTTA-AAGTCTGAATTA-
65 GACTTATAA-CCTGAATTAG
10678341 ATTCACCGGCA
1 ATTCACCGGCA
10678352 TTACATCTGC
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
81 5 0.06
82 73 0.92
83 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (83 bp):
ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCACCGGCACGTAGCCTGCTAG
ACTTATAACCTGAATTAG
Found at i:10679888 original size:23 final size:23
Alignment explanation
Indices: 10679861--10679906 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
10679851 TAATTTGTTA
10679861 TATTAA-ACATATATTAACCTTAT
1 TATTAATAC-TATATTAACCTTAT
10679884 TATTAATTTACTATATTAACCTT
1 TATTAA--TACTATATTAACCTT
10679907 TACATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
25 12 0.60
26 2 0.10
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTAATACTATATTAACCTTAT
Found at i:10681001 original size:17 final size:18
Alignment explanation
Indices: 10680961--10681002 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
10680951 TTTAAAGGAG
10680961 GGATTGTTAATAAAATCT
1 GGATTGTTAATAAAATCT
10680979 GG-TTGTTAATAAAATC-
1 GGATTGTTAATAAAATCT
10680995 GGATTGTT
1 GGATTGTT
10681003 TTTCTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (18 bp):
GGATTGTTAATAAAATCT
Found at i:10682097 original size:21 final size:24
Alignment explanation
Indices: 10682073--10682121 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 24
10682063 AATTTATATT
*
10682073 TATTTTTAATATT-TTGTT-AG-A
1 TATTTTTAAAATTATTGTTAAGAA
10682094 TA-TTTTAAAATTATTGTTAAGAA
1 TATTTTTAAAATTATTGTTAAGAA
10682117 TATTT
1 TATTT
10682122 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 9 0.39
21 7 0.30
22 2 0.09
23 3 0.13
24 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (24 bp):
TATTTTTAAAATTATTGTTAAGAA
Found at i:10682125 original size:22 final size:20
Alignment explanation
Indices: 10682076--10682127 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 20
10682066 TTATATTTAT
*
10682076 TTTTAATATTTTGTTAGATA
1 TTTTAAAATTTTGTTAGATA
10682096 TTTTAAAATTATTGTTAAGAATA
1 TTTTAAAATT-TTGTT-AG-ATA
*
10682119 TTTAAAAAT
1 TTTTAAAAT
10682128 AAAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 9 0.33
21 5 0.19
22 2 0.07
23 11 0.41
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (20 bp):
TTTTAAAATTTTGTTAGATA
Found at i:10689370 original size:9 final size:9
Alignment explanation
Indices: 10689356--10689380 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10689346 TAGGGTTCCA
10689356 TTTCATGAT
1 TTTCATGAT
10689365 TTTCATGAT
1 TTTCATGAT
10689374 TTTCATG
1 TTTCATG
10689381 TAATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.56
Consensus pattern (9 bp):
TTTCATGAT
Found at i:10693457 original size:22 final size:22
Alignment explanation
Indices: 10693432--10693476 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10693422 TTTAATAAAA
10693432 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
10693454 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
10693476 A
1 A
10693477 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:10697234 original size:22 final size:22
Alignment explanation
Indices: 10697209--10697253 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10697199 TTTAATAAAA
10697209 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
10697231 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
10697253 A
1 A
10697254 CAGAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:10698444 original size:15 final size:15
Alignment explanation
Indices: 10698424--10698452 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10698414 GTGAAAGTTC
10698424 ATGTAAGAACAGAAT
1 ATGTAAGAACAGAAT
10698439 ATGTAAGAACAGAA
1 ATGTAAGAACAGAA
10698453 CCATGAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.21, T:0.17
Consensus pattern (15 bp):
ATGTAAGAACAGAAT
Found at i:10705106 original size:26 final size:26
Alignment explanation
Indices: 10705077--10705127 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
10705067 AAACATTTAG
10705077 CACCTCAAACTTTCGTTTAAAATCAA
1 CACCTCAAACTTTCGTTTAAAATCAA
10705103 CACCTCAAACTTTCGTTTAAAATCA
1 CACCTCAAACTTTCGTTTAAAATCA
10705128 GTCTTCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
CACCTCAAACTTTCGTTTAAAATCAA
Found at i:10708838 original size:17 final size:16
Alignment explanation
Indices: 10708816--10708848 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
10708806 AAAGTCAAAG
10708816 ATATGGGTATCAGAAAT
1 ATATGGGTATCA-AAAT
10708833 ATATGGGTATCAAAAT
1 ATATGGGTATCAAAAT
10708849 CTGGGATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (16 bp):
ATATGGGTATCAAAAT
Found at i:10710377 original size:38 final size:38
Alignment explanation
Indices: 10710335--10710407 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
10710325 AAATAAAAAA
10710335 TTAAATTAATAAAAATAAAACATGACATTTAATATCAC
1 TTAAATTAATAAAAATAAAACATGACATTTAATATCAC
10710373 TTAAATTAATAAAAATAAAACATGACATTTAATAT
1 TTAAATTAATAAAAATAAAACATGACATTTAATAT
10710408 TACTCAACTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (38 bp):
TTAAATTAATAAAAATAAAACATGACATTTAATATCAC
Found at i:10713935 original size:41 final size:41
Alignment explanation
Indices: 10713878--10713965 Score: 176
Period size: 41 Copynumber: 2.1 Consensus size: 41
10713868 CCCAGTAAAT
10713878 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
1 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
10713919 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
1 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
10713960 TCCAAA
1 TCCAAA
10713966 GTTTCATCTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (41 bp):
TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
Found at i:10716030 original size:21 final size:21
Alignment explanation
Indices: 10716017--10716107 Score: 101
Period size: 21 Copynumber: 4.3 Consensus size: 21
10716007 ATAAGGGTTG
10716017 AACGGAAGCTCATAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
*
10716038 AACGAAAGCTCATAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
* * * * *
10716059 AACGAAAACCCATAAGGGTTA
1 AACGGAAGCTCATAAGAGCTA
* * *
10716080 AACAGAAGCTCAAAAGAGCTG
1 AACGGAAGCTCATAAGAGCTA
10716101 AACGGAA
1 AACGGAA
10716108 ACCCATTAGA
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (21 bp):
AACGGAAGCTCATAAGAGCTA
Found at i:10716073 original size:42 final size:42
Alignment explanation
Indices: 10716027--10716118 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
10716017 AACGGAAGCT
*
10716027 CATAAGAGCTAAAC-GAAAGCTCATAAGAGCTAAACGAAAACC
1 CATAAGAGCTAAACAG-AAGCTCAAAAGAGCTAAACGAAAACC
* * * *
10716069 CATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGGAAACC
1 CATAAGAGCTAAACAGAAGCTCAAAAGAGCTAAACGAAAACC
*
10716111 CATTAGAG
1 CATAAGAG
10716119 TTGAACAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.47, C:0.20, G:0.21, T:0.13
Consensus pattern (42 bp):
CATAAGAGCTAAACAGAAGCTCAAAAGAGCTAAACGAAAACC
Found at i:10725847 original size:7 final size:7
Alignment explanation
Indices: 10725835--10725859 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10725825 AATCGATTCA
10725835 TATTTAG
1 TATTTAG
10725842 TATTTAG
1 TATTTAG
10725849 TATTTAG
1 TATTTAG
10725856 TATT
1 TATT
10725860 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:10726406 original size:29 final size:30
Alignment explanation
Indices: 10726343--10726406 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
10726333 TATGACGCAA
* * *
10726343 GCCCATCAACAGCGCCCACACAATCACCTG
1 GCCCAGCAACAGCACCCACACAATCACCGG
* *
10726373 ACCCAGCAA-AGCACCCACACAGTCACCGG
1 GCCCAGCAACAGCACCCACACAATCACCGG
10726402 GCCCA
1 GCCCA
10726407 ACACTTCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (30 bp):
GCCCAGCAACAGCACCCACACAATCACCGG
Found at i:10726483 original size:18 final size:18
Alignment explanation
Indices: 10726460--10726497 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10726450 TGCCAGGTGC
* *
10726460 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
10726478 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
10726496 GT
1 GT
10726498 TTTCTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:10731948 original size:16 final size:18
Alignment explanation
Indices: 10731917--10731950 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
10731907 TCCTAATTCT
10731917 CCCTTTTCCTTTTCTTTC
1 CCCTTTTCCTTTTCTTTC
10731935 CCCTTTT-C-TTTCTTTC
1 CCCTTTTCCTTTTCTTTC
10731951 TTTTTCGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (18 bp):
CCCTTTTCCTTTTCTTTC
Found at i:10733345 original size:126 final size:126
Alignment explanation
Indices: 10733120--10733532 Score: 632
Period size: 124 Copynumber: 3.3 Consensus size: 126
10733110 GCCAAATAGG
* * *
10733120 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTATTTTTACTGACATTGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
10733185 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * * *
10733246 AACTACTGTAGCAAAAGAGCATCTACATGGGAGCTTCTTTTAGTACTTTTGCTGACATTACATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
* *
10733311 TGCTTGATGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTC-AAATT-TTTTTTCAAA
66 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * *
10733370 AACTACTGTTGCAAAAGAACGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
* * * * *
10733435 TGCTTAAAGCGTTTTTGACACTATTTTCTCAGAAACGTCTTCTCAGAATTATTTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTA-TTTTTTCAGA
*
10733497 AACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTT
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
10733533 TTTTAAATTA
Statistics
Matches: 256, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
124 106 0.41
125 9 0.04
126 100 0.39
127 41 0.16
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (126 bp):
AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
Found at i:10733744 original size:95 final size:95
Alignment explanation
Indices: 10733569--10733995 Score: 617
Period size: 96 Copynumber: 4.5 Consensus size: 95
10733559 AGTAACCCTA
* * *
10733569 AACCCCAAACCCTAATTTATTTGA-TTTTTCCTTAAAACCTTAAACACTAAACCCTAATCTAATC
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATT
10733633 TTTTAAAAGTTTATAATTAATTTACTCAAGT
66 TTTTAAAA-TTTATAATTAATTTACTCAAGT
* *
10733664 AACCCAAAACCCTAATTTATTTGATTTTTTCCTTAAAACCCTAAACACAAAACCCTAATCTAATT
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATT
10733729 TTTTAAAATTTATAATTAATTTACTCAAGT
66 TTTTAAAATTTATAATTAATTTACTCAAGT
* *
10733759 AACCCTAAACCCTAATTTATTTGATTTTTT--TTAAAAAACCCTCAACACTAAACCCTAATATAA
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTT--AAAACCCTAAACACTAAACCCTAATCTAA
*
10733822 TTTTTTTCAAATTTATAATTAATTTACTCAAGT
64 -TTTTTTAAAATTTATAATTAATTTACTCAAGT
* * * * * *
10733855 AGCCTTAAACCCTAATTTATTTGATTTTTTCTTTAAAAATCATAAACACTAAACCTTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTT-AAAACCCTAAACACTAAACCCTAATCTAAT
* * *
10733920 TTTTTAAAATTTATAATTAATTTAATTAAGA
65 TTTTTAAAATTTATAATTAATTTACTCAAGT
* *
10733951 AACCCTAAACCCTTATTTATTTAATTTTTTCCTTAAAACCCTAAA
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAACCCTAAA
10733996 ATCTAAAAAT
Statistics
Matches: 299, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
93 2 0.01
95 109 0.36
96 161 0.54
97 25 0.08
98 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (95 bp):
AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAACCCTAAACACTAAACCCTAATCTAATT
TTTTAAAATTTATAATTAATTTACTCAAGT
Found at i:10741327 original size:43 final size:43
Alignment explanation
Indices: 10741253--10741419 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
10741243 GCTCTCACGA
* * * * * **
10741253 GCTTCCGTTTAACTCATATGAGTTTCTGTTCAATTCTTTTAAG
1 GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAAG
* *
10741296 GCTTCTGTTAAACCCTTATAGGTTTCCGTTCAGCTCTTTT-AG
1 GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAAG
* *
10741338 AGCTTTTGTTTAACCCGTATGGGTTTCCGTTCAGCTCTTTTATA-
1 -GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTA-AG
*
10741382 GCTTCTGTTTAACCCTTATGGGTTTCCTTTCAGCTCTT
1 GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTT
10741420 ACGAACTTCC
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
42 2 0.02
43 102 0.97
45 1 0.01
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (43 bp):
GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAAG
Found at i:10741396 original size:86 final size:86
Alignment explanation
Indices: 10741259--10741419 Score: 225
Period size: 86 Copynumber: 1.9 Consensus size: 86
10741249 ACGAGCTTCC
* * *
10741259 GTTTAACTCATATGAGTTTCTGTTCAATTCTTTTAAGGCTTCTGTTAAACCCTTATAGGTTTCCG
1 GTTTAACCCATATGAGTTTCCGTTCAACTCTTTTAAGGCTTCTGTTAAACCCTTATAGGTTTCCG
10741324 TTCAGCTCTTTTAGAGCTTTT
66 TTCAGCTCTTTTAGAGCTTTT
* * * * *
10741345 GTTTAACCCGTATGGGTTTCCGTTCAGCTCTTTTATA-GCTTCTGTTTAACCCTTATGGGTTTCC
1 GTTTAACCCATATGAGTTTCCGTTCAACTCTTTTA-AGGCTTCTGTTAAACCCTTATAGGTTTCC
*
10741409 TTTCAGCTCTT
65 GTTCAGCTCTT
10741420 ACGAACTTCC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
86 64 0.98
87 1 0.02
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (86 bp):
GTTTAACCCATATGAGTTTCCGTTCAACTCTTTTAAGGCTTCTGTTAAACCCTTATAGGTTTCCG
TTCAGCTCTTTTAGAGCTTTT
Found at i:10744039 original size:15 final size:14
Alignment explanation
Indices: 10744018--10744053 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
10744008 ATAATCCTTA
*
10744018 ATAATTATCTTAAT
1 ATAATTATCCTAAT
10744032 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
10744047 ATAATTA
1 ATAATTA
10744054 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:10745466 original size:13 final size:13
Alignment explanation
Indices: 10745450--10745497 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
10745440 TCAAAAGTAT
*
10745450 TTCTTAAAATCAC
1 TTCTTAAAAGCAC
**
10745463 TTCTCCAAAGCAC
1 TTCTTAAAAGCAC
*
10745476 TTCTTAAAAGCAA
1 TTCTTAAAAGCAC
10745489 TTCTTAAAA
1 TTCTTAAAA
10745498 CCGATACTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (13 bp):
TTCTTAAAAGCAC
Found at i:10748016 original size:30 final size:30
Alignment explanation
Indices: 10747982--10748039 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
10747972 CAACTTAATA
10747982 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
10748012 AACAAATGCCTTTAAAATAATAACAAAA
1 AACAAATGCCTCTAAAATAATAACAAAA
10748040 GTAATAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.59, C:0.16, G:0.03, T:0.22
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:10748101 original size:11 final size:11
Alignment explanation
Indices: 10748084--10748122 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
10748074 GAATAACAAT
10748084 AAAATAATAGC
1 AAAATAATAGC
* *
10748095 AACATAATAGT
1 AAAATAATAGC
*
10748106 AAAATGATAGC
1 AAAATAATAGC
10748117 AAAATA
1 AAAATA
10748123 GGAAGAAAAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:10748101 original size:22 final size:22
Alignment explanation
Indices: 10748076--10748118 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10748066 TATCCAAAGA
10748076 ATAACAATAAAATAATAGCAAC
1 ATAACAATAAAATAATAGCAAC
* * *
10748098 ATAATAGTAAAATGATAGCAA
1 ATAACAATAAAATAATAGCAA
10748119 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAATAGCAAC
Found at i:10750725 original size:36 final size:36
Alignment explanation
Indices: 10750685--10750761 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
10750675 GCCAGTAGTG
* *
10750685 TGTTTCAGG-TGGATTAGCTCTTATAAGCATTTGGTA
1 TGTTTC-GGATGGACTAGCTCTTATAAGCATCTGGTA
* * *
10750721 TGTTTCGGATGGACTAGCTCTTGTGAGCATCTGGTG
1 TGTTTCGGATGGACTAGCTCTTATAAGCATCTGGTA
10750757 TGTTT
1 TGTTT
10750762 TGGTGGGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 2 0.06
36 33 0.94
ACGTcount: A:0.17, C:0.13, G:0.29, T:0.42
Consensus pattern (36 bp):
TGTTTCGGATGGACTAGCTCTTATAAGCATCTGGTA
Found at i:10753423 original size:16 final size:16
Alignment explanation
Indices: 10753402--10753438 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
10753392 TCTGGTATAC
10753402 AAGTATTGAGAATTAT
1 AAGTATTGAGAATTAT
*
10753418 AAGTATTGAGAATTCT
1 AAGTATTGAGAATTAT
10753434 AAGTA
1 AAGTA
10753439 AATTTGTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (16 bp):
AAGTATTGAGAATTAT
Found at i:10754166 original size:10 final size:10
Alignment explanation
Indices: 10754151--10754176 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10754141 CTTACTGATC
10754151 TGTTAGTATT
1 TGTTAGTATT
10754161 TGTTAGTATT
1 TGTTAGTATT
10754171 TGTTAG
1 TGTTAG
10754177 CACTTAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (10 bp):
TGTTAGTATT
Found at i:10758199 original size:32 final size:32
Alignment explanation
Indices: 10758158--10758244 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 32
10758148 AACTTTTCCG
* *
10758158 GAAAATATTTTCAGGAAATC-TGCCAAACAGCA
1 GAAAATATTTTCAGTAAATCAT-CCAAACACCA
*
10758190 GAAAATATTTTACA-TAGATTCATCCAAACACCA
1 GAAAATATTTT-CAGTA-AATCATCCAAACACCA
10758223 GAAAATATTTTCAGTAAATCAT
1 GAAAATATTTTCAGTAAATCAT
10758245 TTTACAGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
32 19 0.40
33 27 0.57
34 1 0.02
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (32 bp):
GAAAATATTTTCAGTAAATCATCCAAACACCA
Found at i:10758276 original size:34 final size:34
Alignment explanation
Indices: 10758224--10758289 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
10758214 CAAACACCAG
*
10758224 AAAATATTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCAGTAAATCATTTTACAGAAAAGT
*
10758258 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTC-AGTAAATCATTTTACAGAAAA
10758290 TATTTTACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (34 bp):
AAAACATTTTCAGTAAATCATTTTACAGAAAAGT
Found at i:10770249 original size:12 final size:12
Alignment explanation
Indices: 10770232--10770275 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
10770222 CAGTAAATGT
10770232 GGATGATGATGG
1 GGATGATGATGG
*
10770244 GGATGATGATGA
1 GGATGATGATGG
***
10770256 TTTTGATGATGG
1 GGATGATGATGG
10770268 GGATGATG
1 GGATGATG
10770276 GGGATCAGTC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.43, T:0.32
Consensus pattern (12 bp):
GGATGATGATGG
Found at i:10783299 original size:132 final size:132
Alignment explanation
Indices: 10783062--10783312 Score: 396
Period size: 132 Copynumber: 1.9 Consensus size: 132
10783052 CAAGAAAGTG
* * *
10783062 AAAGGATTTCTTCCTGATAACTTCTTTGATAGGGATGAAACCAAGTTACCTATGAATCTTATGAA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTATGAATCTCATGAA
*
10783127 GCCTCCTAGGGAGAATAAACTGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
66 GCCTCCTAGGGAGAATAAACAGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
10783192 TT
131 TT
* *
10783194 AAAGGATCTCTTCCTGATGACTTCTTTGATAAGGATGATACCAAGTTACCTATGAATGC-CATGA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTATGAAT-CTCATGA
* ** *
10783258 AGCCTCCTAGGGAGAATATACAGGCTTCAGAGCAGGCTAGTGCTCCAGAAACCAA
65 AGCCTCCTAGGGAGAATAAACAGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAA
10783313 GCAAGTAAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
132 107 0.99
133 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (132 bp):
AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTATGAATCTCATGAA
GCCTCCTAGGGAGAATAAACAGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
TT
Found at i:10795754 original size:22 final size:22
Alignment explanation
Indices: 10795729--10795771 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10795719 TAATAAAAAG
10795729 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
10795751 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
10795772 CACTCCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:10799488 original size:22 final size:22
Alignment explanation
Indices: 10799463--10799505 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10799453 TAATAAAAAG
10799463 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
10799485 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
10799506 CAACAACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:10814559 original size:113 final size:112
Alignment explanation
Indices: 10814377--10814907 Score: 683
Period size: 113 Copynumber: 4.9 Consensus size: 112
10814367 GGAAATTTTT
* ***
10814377 TTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAACAGT----AAAATTT---TTTTTTGAATTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTCTTTTTT
*
10814435 TTCGTGTCAGAATCATATATAAATATACGAAAAAAGTAAAAAAAAAA
66 TTCGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAA
* *****
10814482 TTTGGGTGCTGGCCTCTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTGAATTTTTTCTTTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAA-AAAAATTTGAATTTTTTCTTTTT
*
10814547 TTTCGTATCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAA
65 TTTCGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAA
10814595 TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTCTTTTT
1 -TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTC--TTT
*
10814660 TTTTTCGTGTCAGAATTAGATATAAATATACGAAAAAAGT--AAAAAAAA
63 TTTTTCGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAA
* *
10814708 --T---T--T-G--TGAC-A-GGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTGTTTTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTCTTTTTT
*
10814761 TTCGTGTCAGAATCAGATATAAATATACAAAAAAAGTAAAAAAAAAAA
66 TTCGTGTCAGAATCAGATATAAATATACGAAAAAAGT-AAAAAAAAAA
* **
10814809 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACGGTAAAAAAAA-TTGAATTTTTAGTTTTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTCTTTTTT
*
10814873 TTCGTGTCAGAATCAGATATAAATATATGAAAAAA
66 TTCGTGTCAGAATCAGATATAAATATACGAAAAAA
10814908 AACAAAAAAT
Statistics
Matches: 372, Mismatches: 28, Indels: 45
0.84 0.06 0.10
Matches are distributed among these distances:
98 41 0.11
100 37 0.10
101 9 0.02
102 3 0.01
103 1 0.00
104 1 0.00
105 37 0.10
106 1 0.00
107 1 0.00
108 1 0.00
109 1 0.00
110 4 0.01
111 3 0.01
112 51 0.14
113 100 0.27
114 40 0.11
115 41 0.11
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.33
Consensus pattern (112 bp):
TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTCTTTTTT
TTCGTGTCAGAATCAGATATAAATATACGAAAAAAGTAAAAAAAAAA
Found at i:10814732 original size:100 final size:98
Alignment explanation
Indices: 10814617--10814908 Score: 352
Period size: 112 Copynumber: 2.8 Consensus size: 98
10814607 GCCTGTCAAT
* *
10814617 GGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTCTTTTTTTTTTCGTGTCAGAATTAGATA
1 GGCCGGCACCCAACAGTAAAAAAAATTTGAA-TTTTT-TGTTTTTTTTCGTGTCAGAATCAGATA
*
10814682 TAAATATACGAAAAAAGTAAAAAAAATTTGTGACA
64 TAAATATACAAAAAAAGTAAAAAAAATTTGTGACA
10814717 GGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTGTTTTTTTTCGTGTCAGAATCAGATATA
1 GGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTGTTTTTTTTCGTGTCAGAATCAGATATA
*
10814782 AATATACAAAAAAAGTAAAAAAAAAAATTTGGGTGCTGGCCTGTCAA
66 AATATACAAAAAAAGT---AAAAAAAA--T---T--T-G--TGAC-A
* *
10814829 TGGCCGGCACCCAACGGTAAAAAAAA-TTGAATTTTTAGTTTTTTTTCGTGTCAGAATCAGATAT
1 -GGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTGTTTTTTTTCGTGTCAGAATCAGATAT
*
10814893 AAATATATGAAAAAAA
65 AAATATA-CAAAAAAA
10814909 ACAAAAAATT
Statistics
Matches: 169, Mismatches: 7, Indels: 19
0.87 0.04 0.10
Matches are distributed among these distances:
98 42 0.25
99 5 0.03
100 31 0.18
101 8 0.05
103 1 0.01
106 1 0.01
108 1 0.01
109 1 0.01
111 3 0.02
112 45 0.27
113 31 0.18
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (98 bp):
GGCCGGCACCCAACAGTAAAAAAAATTTGAATTTTTTGTTTTTTTTCGTGTCAGAATCAGATATA
AATATACAAAAAAAGTAAAAAAAATTTGTGACA
Found at i:10817649 original size:24 final size:27
Alignment explanation
Indices: 10817597--10817661 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 27
10817587 CTAAAATGGG
*
10817597 TTACAACAGTGAGTCCTCTTTTTGCTTT
1 TTACAATAGTGAGTCCTCTTTTT-CTTT
10817625 TTACAATAGTGAGT-CT-TTTTT-TTT
1 TTACAATAGTGAGTCCTCTTTTTCTTT
*
10817649 TAACAATAGTGAG
1 TTACAATAGTGAG
10817662 GTGTGAGAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 15 0.43
26 5 0.14
27 2 0.06
28 13 0.37
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (27 bp):
TTACAATAGTGAGTCCTCTTTTTCTTT
Found at i:10817733 original size:44 final size:43
Alignment explanation
Indices: 10817653--10817740 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 43
10817643 TTTTTTTAAC
* * * *
10817653 AATAGTGAGGTGTGAGAGGGAAGGGAGAGGTGGTGGGGGGTTGG
1 AATAGTGAGGAGTGAGAGGAAAGCGAGAGGTAGT-GGGGGTTGG
*
10817697 AATAGTGAGGAGTGAGAGGAAAGACG-GTGGTAGTGGGGGTTGG
1 AATAGTGAGGAGTGAGAGGAAAG-CGAGAGGTAGTGGGGGTTGG
10817740 A
1 A
10817741 CACAACGGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
43 10 0.26
44 27 0.71
45 1 0.03
ACGTcount: A:0.26, C:0.01, G:0.55, T:0.18
Consensus pattern (43 bp):
AATAGTGAGGAGTGAGAGGAAAGCGAGAGGTAGTGGGGGTTGG
Found at i:10821635 original size:16 final size:18
Alignment explanation
Indices: 10821609--10821641 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10821599 TTAATTTAAA
10821609 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
10821626 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
10821642 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:10824348 original size:28 final size:28
Alignment explanation
Indices: 10824309--10824404 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
10824299 TATACAGTAG
* *
10824309 CAGT-ACAGTGTGGGCCTTAACCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
10824336 CAGTAACAGTGTGTAGACCTTAGCCCAATA
1 CAGTAACAGTGTG--GGCCTTAGCCCAATA
*
10824366 CAGTAACAGTGGGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
10824394 CAGTAATCAGT
1 CAGTAA-CAGT
10824405 ACAATGTAGT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
27 4 0.07
28 28 0.47
29 4 0.07
30 24 0.40
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:10824368 original size:30 final size:28
Alignment explanation
Indices: 10824323--10824404 Score: 101
Period size: 30 Copynumber: 2.8 Consensus size: 28
10824313 ACAGTGTGGG
* *
10824323 CCTTAACCCATTACAGTAACAGTGTGTAGA
1 CCTTAGCCCAATACAGTAACAGTG-G-AGA
* *
10824353 CCTTAGCCCAATACAGTAACAGTGGGGG
1 CCTTAGCCCAATACAGTAACAGTGGAGA
10824381 CCTTAGCCCAATACAGTAATCAGT
1 CCTTAGCCCAATACAGTAA-CAGT
10824405 ACAATGTAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
28 20 0.43
29 5 0.11
30 22 0.47
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.23
Consensus pattern (28 bp):
CCTTAGCCCAATACAGTAACAGTGGAGA
Found at i:10824768 original size:27 final size:27
Alignment explanation
Indices: 10824752--10825004 Score: 316
Period size: 27 Copynumber: 9.3 Consensus size: 27
10824742 TACCCTATGG
*
10824752 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCAA
* * *
10824779 GGATATTTCGATCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCAA
*
10824806 GGGCATTTCGGTCATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCAA
* *
10824832 GGACTATTTCGATCATTTTACCCTTCAA
1 GG-GTATTTCGGTCATTTTACCCTTCAA
*
10824860 GGGTATTTCGATCATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCAA
* *
10824886 GGTGTATTTCAGTTATTTTACCCTTCAA
1 GG-GTATTTCGGTCATTTTACCCTTCAA
*
10824914 GGGTATTTTGGTCATTTTACCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCAA
* *
10824940 GTGGTATTTCGATCATTTTACCCATT-GA
1 G-GGTATTTCGGTCATTTTACCC-TTCAA
10824968 GGGTATTTCCGGTCATTTTACCCTTCAA
1 GGGTATTT-CGGTCATTTTACCCTTCAA
10824996 GGGTATTTC
1 GGGTATTTC
10825005 AATCATTTGC
Statistics
Matches: 198, Mismatches: 19, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.04
27 158 0.80
28 32 0.16
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTTCAA
Found at i:10824801 original size:54 final size:53
Alignment explanation
Indices: 10824724--10825012 Score: 359
Period size: 54 Copynumber: 5.3 Consensus size: 53
10824714 TCAACTCCTA
* * * *
10824724 AGGGTATATCAATTATTTTACCCTAT-GGGGGTATTTCGGTCATTTTACCCTTC
1 AGGGTATTTCGATCATTTTACCCT-TCGAGGGTATTTCGGTCATTTTACCCTTC
* *
10824777 GAGGATATTTCGATCATTTTACCCTTCGAGGGCATTTCGGTCATTTTACCCTTC
1 -AGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTC
* * *
10824831 AGGACTATTTCGATCATTTTACCCTTCAAGGGTATTTCGATCATTTTACCCTTC
1 AGG-GTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTC
* * *
10824885 AGGTGTATTTC-AGTTATTTTACCCTTCAAGGGTATTTTGGTCATTTTACCCTTC
1 AGG-GTATTTCGA-TCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTC
10824939 AGTGGTATTTCGATCATTTTACCCATT-GAGGGTATTTCCGGTCATTTTACCCTTC
1 AG-GGTATTTCGATCATTTTACCC-TTCGAGGGTATTT-CGGTCATTTTACCCTTC
*
10824994 AAGGGTATTTCAATCATTT
1 -AGGGTATTTCGATCATTT
10825013 GCCCTTGACT
Statistics
Matches: 208, Mismatches: 19, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
53 5 0.02
54 166 0.80
55 35 0.17
56 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (53 bp):
AGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTC
Found at i:10824849 original size:81 final size:80
Alignment explanation
Indices: 10824752--10825012 Score: 357
Period size: 81 Copynumber: 3.2 Consensus size: 80
10824742 TACCCTATGG
* * *
10824752 GGGTATTTCGGTCATTTTACCCTTCGAGGATATTTCGATCATTTTACCCTTCGAGGGCATTTCGG
1 GGGTATTTCGATCATTTTACCCTTC-AGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGG
10824817 TCATTTTACCCTTC-A
65 TCATTTTACCCTTCAA
*
10824832 GGACTATTTCGATCATTTTACCCTTCAAGGGTATTTCGATCATTTTACCCTTC-AGGTGTATTTC
1 GG-GTATTTCGATCATTTTACCCTTC-AGGGTATTTCGATCATTTTACCCTTCGAGG-GTATTTC
* *
10824896 AGTTATTTTACCCTTCAA
63 GGTCATTTTACCCTTCAA
* *
10824914 GGGTATTTTGGTCATTTTACCCTTCAGTGGTATTTCGATCATTTTACCCATT-GAGGGTATTTCC
1 GGGTATTTCGATCATTTTACCCTTCAG-GGTATTTCGATCATTTTACCC-TTCGAGGGTATTT-C
10824978 GGTCATTTTACCCTTCAA
63 GGTCATTTTACCCTTCAA
*
10824996 GGGTATTTCAATCATTT
1 GGGTATTTCGATCATTT
10825013 GCCCTTGACT
Statistics
Matches: 159, Mismatches: 15, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
80 7 0.04
81 113 0.71
82 39 0.25
ACGTcount: A:0.20, C:0.21, G:0.17, T:0.42
Consensus pattern (80 bp):
GGGTATTTCGATCATTTTACCCTTCAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGT
CATTTTACCCTTCAA
Found at i:10827800 original size:20 final size:20
Alignment explanation
Indices: 10827772--10827811 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10827762 TGTTAAATTT
*
10827772 ATGATTTAAGGATTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
*
10827792 ATGAGTTAAGGTTTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
10827812 TAAATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (20 bp):
ATGAGTTAAGGATTAGAGAA
Found at i:10837906 original size:6 final size:6
Alignment explanation
Indices: 10837895--10837924 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
10837885 TGGGGGACAT
10837895 GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC
1 GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC
10837925 ATGATCCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.33, G:0.50, T:0.00
Consensus pattern (6 bp):
GGGCAC
Found at i:10841073 original size:3 final size:3
Alignment explanation
Indices: 10841065--10841096 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10841055 AAATTAGTTA
10841065 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10841097 AGAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10845231 original size:12 final size:11
Alignment explanation
Indices: 10845214--10845245 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
10845204 TCTTTTTCCA
10845214 TTTCTTTTCTT
1 TTTCTTTTCTT
10845225 TTCTCTTTTCTT
1 TT-TCTTTTCTT
10845237 TTTCTTTTC
1 TTTCTTTTC
10845246 CCCTTTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:10866596 original size:20 final size:21
Alignment explanation
Indices: 10866554--10866596 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
10866544 GTTTAACATA
* *
10866554 AATTGAATGTGATTAATGCTT
1 AATTGAATGTGATGAATGATT
*
10866575 AATTGCATGTG-TGAATGATT
1 AATTGAATGTGATGAATGATT
10866595 AA
1 AA
10866597 ATGCTACCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.40
Consensus pattern (21 bp):
AATTGAATGTGATGAATGATT
Found at i:10870386 original size:14 final size:14
Alignment explanation
Indices: 10870367--10870412 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
10870357 TATTTAAAAT
10870367 ATAATAATAATTTA
1 ATAATAATAATTTA
*
10870381 ATAATACTAATTTA
1 ATAATAATAATTTA
10870395 ATAATAATAATTTA
1 ATAATAATAATTTA
10870409 ATAA
1 ATAA
10870413 CATTTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:10872180 original size:16 final size:16
Alignment explanation
Indices: 10872159--10872226 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
10872149 TTTGGTTCGC
10872159 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
10872175 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
*
10872191 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
10872207 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10872223 TGTA
1 TGTA
10872227 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:10872479 original size:16 final size:16
Alignment explanation
Indices: 10872442--10872483 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10872432 TTAATCATAT
*
10872442 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
10872458 TT-AAATATATTATAA
1 TTAAAATATATTATAA
10872473 TTAAAATATAT
1 TTAAAATATAT
10872484 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:10872490 original size:14 final size:15
Alignment explanation
Indices: 10872451--10872492 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10872441 TTTAAACATA
*
10872451 ATTATTATTAAATAT
1 ATTATAATTAAATAT
10872466 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
10872480 A-TATAATTTAATA
1 ATTATAATTAAATA
10872493 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:10872687 original size:26 final size:28
Alignment explanation
Indices: 10872658--10872718 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
10872648 CATGAATTTG
*
10872658 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
10872684 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
10872712 TAAAATT
1 TATAATT
10872719 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:10876227 original size:15 final size:15
Alignment explanation
Indices: 10876207--10876243 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
10876197 TCATTATAAG
*
10876207 TTTTAAATTTTGAAA
1 TTTTAAATTTTAAAA
10876222 TTTTAAATTTTAAAA
1 TTTTAAATTTTAAAA
*
10876237 TATTAAA
1 TTTTAAA
10876244 ATTAATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
TTTTAAATTTTAAAA
Found at i:10879878 original size:26 final size:28
Alignment explanation
Indices: 10879824--10879884 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
10879814 TATTATCAAG
* *
10879824 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
10879852 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
10879878 AATTATA
1 AATTATA
10879885 CAAATTCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:10880080 original size:16 final size:16
Alignment explanation
Indices: 10880059--10880100 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10880049 TTATTAAATT
*
10880059 ATATATTTTAATTATA
1 ATATATTTTAATAATA
10880075 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
10880090 AT-TATGTTTAA
1 ATATAT-TTTAA
10880101 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:10880085 original size:15 final size:15
Alignment explanation
Indices: 10880050--10880091 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10880040 TTAAGAATTT
*
10880050 TATTAAATTAT-ATA
1 TATTTAATTATAATA
10880064 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
10880078 TATTTAATAATAAT
1 TATTTAATTATAAT
10880092 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:10880337 original size:16 final size:16
Alignment explanation
Indices: 10880316--10880383 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
10880306 GATTTGCTAT
10880316 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10880332 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
10880348 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
10880364 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10880380 TACA
1 TACA
10880384 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:10891464 original size:43 final size:43
Alignment explanation
Indices: 10891403--10891643 Score: 313
Period size: 43 Copynumber: 5.6 Consensus size: 43
10891393 TTTTAGAAAT
* *
10891403 AAACGACGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
10891446 AAACGTCGCTATAGAACAAGATCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
*
10891489 AAACGCCGCTAAAGAACAAGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
**
10891532 AAACGCC-CTAAAGAACAAGACCTTTAATGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * * **
10891574 AAATGCCGCTATAGAACAAAACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
10891617 AAACACCGCTAAAAAACATGACTTTTA
1 AAACGCCGCTAAAGAACAAGACCTTTA
10891644 AAAAAATATT
Statistics
Matches: 170, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
42 38 0.22
43 132 0.78
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:10891590 original size:85 final size:85
Alignment explanation
Indices: 10891403--10891644 Score: 304
Period size: 85 Copynumber: 2.8 Consensus size: 85
10891393 TTTTAGAAAT
* * * * *
10891403 AAACGACGCTAAAGAACAAGACCTTTAGCGGCACTTTTCCCACAAACGTCGCTATAGAACAAGAT
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACG-CCCTAAAGAACAAGAC
* *
10891468 CTTTAGCGGCGCTTTTTCCAC
65 CTTTAACGGCGCTTTTCCCAC
*
10891489 AAACGCCGCTAAAGAACAAGACCTTTAGCGACGCTTTTCCCACAAACGCCCTAAAGAACAAGACC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCCTAAAGAACAAGACC
*
10891554 TTTAATGGCGCTTTTCCCAC
66 TTTAACGGCGCTTTTCCCAC
* * * ** * * *
10891574 AAATGCCGCTATAGAACAAAACCTTTAGCGGCGCTTTTTTCACAAACACCGCTAAAAAACATGAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCC-CTAAAGAACAAGAC
*
10891639 TTTTAA
65 CTTTAA
10891645 AAAAATATTT
Statistics
Matches: 136, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
85 74 0.54
86 62 0.46
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (85 bp):
AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCCTAAAGAACAAGACC
TTTAACGGCGCTTTTCCCAC
Found at i:10892332 original size:4 final size:4
Alignment explanation
Indices: 10892323--10892373 Score: 102
Period size: 4 Copynumber: 12.8 Consensus size: 4
10892313 GGTATATTAG
10892323 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
10892371 ATA
1 ATA
10892374 TATCTATATC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:10895473 original size:18 final size:20
Alignment explanation
Indices: 10895433--10895473 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
10895423 TAGCCATTCA
* *
10895433 ATATATCTTTTACAATTATT
1 ATATATCTCTTACAATTAAT
10895453 ATATATCTCTTA-AA-TAAT
1 ATATATCTCTTACAATTAAT
10895471 ATA
1 ATA
10895474 AACTATACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 6 0.32
19 2 0.11
20 11 0.58
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATATCTCTTACAATTAAT
Found at i:10895617 original size:22 final size:22
Alignment explanation
Indices: 10895592--10895636 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10895582 CCGGCCCTTG
*
10895592 AATCCTTAAATCCTAACCCCTA
1 AATCCCTAAATCCTAACCCCTA
* *
10895614 AATCCCTAACTCTTAACCCCTA
1 AATCCCTAAATCCTAACCCCTA
10895636 A
1 A
10895637 CTACTAACCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.27
Consensus pattern (22 bp):
AATCCCTAAATCCTAACCCCTA
Found at i:10895634 original size:14 final size:14
Alignment explanation
Indices: 10895617--10895650 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10895607 ACCCCTAAAT
10895617 CCCTAACT-CTTAAC
1 CCCTAACTAC-TAAC
10895631 CCCTAACTACTAAC
1 CCCTAACTACTAAC
10895645 CCCTAA
1 CCCTAA
10895651 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 18 0.95
15 1 0.05
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTAACTACTAAC
Found at i:10895775 original size:21 final size:18
Alignment explanation
Indices: 10895733--10895784 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 18
10895723 CAAAACACGT
*
10895733 AAAAAACTGAACTGGATA
1 AAAAAACTGAACCGGATA
10895751 AAAAAACTGAACCGAGCACTA
1 AAAAAACTGAACCG-G-A-TA
*
10895772 AAAATACTGAACC
1 AAAAAACTGAACC
10895785 AAGATGGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 13 0.45
19 1 0.03
20 1 0.03
21 14 0.48
ACGTcount: A:0.54, C:0.19, G:0.13, T:0.13
Consensus pattern (18 bp):
AAAAAACTGAACCGGATA
Found at i:10895951 original size:7 final size:7
Alignment explanation
Indices: 10895939--10895990 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
10895929 ATTAGTTAAT
10895939 CTAAACC
1 CTAAACC
10895946 CTAAACC
1 CTAAACC
*
10895953 ATAAA-C
1 CTAAACC
*
10895959 TTAAACC
1 CTAAACC
10895966 CTAAAACC
1 CT-AAACC
10895974 CTAAACC
1 CTAAACC
10895981 CATAAACC
1 C-TAAACC
10895989 CT
1 CT
10895991 TAACACATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
6 5 0.13
7 20 0.51
8 14 0.36
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:10895999 original size:15 final size:15
Alignment explanation
Indices: 10895940--10896000 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
10895930 TTAGTTAATC
10895940 TAAACCCTAAAC-CA
1 TAAACCCTAAACACA
* *
10895954 TAAA-CTTAAAC-CC
1 TAAACCCTAAACACA
*
10895967 TAAAACCCTAAACCCA
1 T-AAACCCTAAACACA
*
10895983 TAAACCCTTAACACA
1 TAAACCCTAAACACA
10895998 TAA
1 TAA
10896001 CCTTTAAACC
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
13 8 0.21
14 7 0.18
15 21 0.55
16 2 0.05
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAACCCTAAACACA
Found at i:10898091 original size:40 final size:42
Alignment explanation
Indices: 10898000--10898107 Score: 148
Period size: 40 Copynumber: 2.6 Consensus size: 42
10897990 CAAACAAAAA
* * * *
10898000 CGCCGCTAAAGAATATGGTCTTTAGCGGCATTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCAGCAGTTTTTTCTAAG
* *
10898042 CGTCACTAAAGAACATGTTCTTTAGCAGC-GTTTTTT-TAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCAGCAGTTTTTTCTAAG
10898082 CGCCGCTAAAGAACATGTTCTTTAGC
1 CGCCGCTAAAGAACATGTTCTTTAGC
10898108 GGTGCTTTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 28 0.48
41 6 0.10
42 24 0.41
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCAGCAGTTTTTTCTAAG
Found at i:10903970 original size:9 final size:9
Alignment explanation
Indices: 10903956--10904265 Score: 272
Period size: 9 Copynumber: 35.3 Consensus size: 9
10903946 TACAAGGGTA
10903956 TAAGTTATG
1 TAAGTTATG
10903965 TAAGTTATG
1 TAAGTTATG
*
10903974 TACGTGTATG
1 TAAGT-TATG
10903984 TAAGTTATG
1 TAAGTTATG
*
10903993 TACGTGTA--
1 TAAGT-TATG
*
10904001 TAAATTATG
1 TAAGTTATG
10904010 TAAGTTATG
1 TAAGTTATG
*
10904019 TACGTGTA--
1 TAAGT-TATG
10904027 TAAGTTATG
1 TAAGTTATG
10904036 TAAGTTATG
1 TAAGTTATG
*
10904045 T-A-TTAAG
1 TAAGTTATG
10904052 TAAGTTATG
1 TAAGTTATG
*
10904061 TAAGTTGTG
1 TAAGTTATG
10904070 T-A-TTATG
1 TAAGTTATG
*
10904077 TAAGTTATT
1 TAAGTTATG
*
10904086 TAAGTTATC
1 TAAGTTATG
* *
10904095 AAAGTAATG
1 TAAGTTATG
*
10904104 TATGTTATG
1 TAAGTTATG
10904113 TAAG-T-TG
1 TAAGTTATG
10904120 TAAGTTAT-
1 TAAGTTATG
*
10904128 TATGTATTATG
1 TAAG--TTATG
10904139 TAAGTTATG
1 TAAGTTATG
10904148 TAAGTTATG
1 TAAGTTATG
10904157 TAAGTTAAATG
1 TAAGTT--ATG
10904168 T-A-TTATG
1 TAAGTTATG
*
10904175 TAGGTTATG
1 TAAGTTATG
*
10904184 TAAGTTGTG
1 TAAGTTATG
* *
10904193 TAAGATATT
1 TAAGTTATG
10904202 TAAGTTATG
1 TAAGTTATG
* *
10904211 TGAGTTTTG
1 TAAGTTATG
10904220 T-A-TTATG
1 TAAGTTATG
10904227 TAAGTTATG
1 TAAGTTATG
10904236 TAAGTTATG
1 TAAGTTATG
*
10904245 TAGGTTATG
1 TAAGTTATG
*
10904254 TAAGTTTTG
1 TAAGTTATG
10904263 TAA
1 TAA
10904266 TGTACAAGTG
Statistics
Matches: 242, Mismatches: 37, Indels: 44
0.75 0.11 0.14
Matches are distributed among these distances:
7 29 0.12
8 18 0.07
9 171 0.71
10 17 0.07
11 7 0.03
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:10904016 original size:26 final size:26
Alignment explanation
Indices: 10903980--10904046 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
10903970 TATGTACGTG
10903980 TATGTAAGTTATGTACGTGTATAAAT
1 TATGTAAGTTATGTACGTGTATAAAT
*
10904006 TATGTAAGTTATGTACGTGTATAAGT
1 TATGTAAGTTATGTACGTGTATAAAT
10904032 TATGTAAGTTATGTA
1 TATGTAAGTTATGTA
10904047 TTAAGTAAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (26 bp):
TATGTAAGTTATGTACGTGTATAAAT
Found at i:10904030 original size:17 final size:17
Alignment explanation
Indices: 10903965--10904037 Score: 72
Period size: 19 Copynumber: 4.6 Consensus size: 17
10903955 ATAAGTTATG
10903965 TAAGTTATGTACGTGTA
1 TAAGTTATGTACGTGTA
10903982 TGTAAGTTATGTACGTGTA
1 --TAAGTTATGTACGTGTA
10904001 TAA---AT-TA--TG--
1 TAAGTTATGTACGTGTA
10904010 TAAGTTATGTACGTGTA
1 TAAGTTATGTACGTGTA
10904027 TAAGTTATGTA
1 TAAGTTATGTA
10904038 AGTTATGTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 18
0.72 0.00 0.28
Matches are distributed among these distances:
9 3 0.07
11 2 0.04
12 2 0.04
13 4 0.09
14 2 0.04
15 2 0.04
17 14 0.30
19 17 0.37
ACGTcount: A:0.32, C:0.04, G:0.22, T:0.42
Consensus pattern (17 bp):
TAAGTTATGTACGTGTA
Found at i:10904072 original size:25 final size:25
Alignment explanation
Indices: 10904005--10904255 Score: 113
Period size: 25 Copynumber: 9.6 Consensus size: 25
10903995 CGTGTATAAA
10904005 TTATGTAAGTTATGTACGTGT-A-TAAG
1 TTATGTAAGTTATGTA--T-TAAGTAAG
10904031 TTATGTAAGTTATGTATTAAGTAAG
1 TTATGTAAGTTATGTATTAAGTAAG
* *
10904056 TTATGTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTAAGTAAG
* ** * *
10904081 TTATTTAAGTTATCAAAGTAATGTATG
1 TTATGTAAGTTAT-GTATTAA-GTAAG
* *
10904108 TTATGTAAGTTGTAAGTTATTATGT-A-
1 TTATGTAAG-T-TATG-TATTAAGTAAG
*
10904134 TTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-A-TTAAGTAAG
*
10904161 TTAAATGT-A-TTATGTAGGTTATGTAAG
1 TT--ATGTAAGTTATGTA--TTAAGTAAG
* * * * *
10904188 TTGTGTAAGATATTTAAGTTATGTGAG
1 TTATGTAAGTTATGT-A-TTAAGTAAG
* *
10904215 TTTTGT-A-TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-A-TTAAGTAAG
*
10904240 TTATGTAGGTTATGTA
1 TTATGTAAGTTATGTA
10904256 AGTTTTGTAA
Statistics
Matches: 179, Mismatches: 27, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
23 2 0.01
24 6 0.03
25 68 0.38
26 33 0.18
27 56 0.31
28 5 0.03
29 9 0.05
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTAAGTAAG
Found at i:10904174 original size:62 final size:60
Alignment explanation
Indices: 10903956--10904265 Score: 231
Period size: 62 Copynumber: 5.2 Consensus size: 60
10903946 TACAAGGGTA
* * *
10903956 TAAGTTATGTAAGTTATGTACGTGT-ATGTAAGTTATGTACGTGTA--TAAATTATGTAAGTTAT
1 TAAGTTATGTAAGTTATGTAAGT-TAATGT-A-TTATGTAAGT-TATGTAAGTTATGT-A-TTAT
10904018 G
60 G
* * *
10904019 TACGTGTA--TAAGTTATGTAAGTT-ATGTATTAAGTAAGTTATGTAAGTTGTGTATTATG
1 TAAGT-TATGTAAGTTATGTAAGTTAATGTATTATGTAAGTTATGTAAGTTATGTATTATG
* **
10904077 TAAGTTATTTAAGTTATCAAAG-TAATGTATGTTATGTAAG-T-TGTAAGTTATTATGTATTATG
1 TAAGTTATGTAAGTTATGTAAGTTAATGTA--TTATGTAAGTTATGTAAG---TTATGTATTATG
*
10904139 TAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAG-T-TG-----TG
1 TAAGTTATGTAAGTTATGTAAGTT-AATGTATTATGTAAGTTATGTAAGTTATGTATTATG
* * * *
10904193 TAAGATATTTAAGTTATGTGAGTT-TTGTATTATGTAAGTTATGTAAGTTATGTAGGTTATG
1 TAAGTTATGTAAGTTATGTAAGTTAATGTATTATGTAAGTTATGTAAGTTATGTA--TTATG
*
10904254 TAAGTTTTGTAA
1 TAAGTTATGTAA
10904266 TGTACAAGTG
Statistics
Matches: 200, Mismatches: 23, Indels: 50
0.73 0.08 0.18
Matches are distributed among these distances:
52 21 0.10
53 1 0.00
54 25 0.12
57 2 0.01
58 12 0.06
59 33 0.17
60 11 0.05
61 24 0.12
62 51 0.25
63 6 0.03
64 14 0.07
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (60 bp):
TAAGTTATGTAAGTTATGTAAGTTAATGTATTATGTAAGTTATGTAAGTTATGTATTATG
Found at i:10904238 original size:43 final size:43
Alignment explanation
Indices: 10903960--10904264 Score: 259
Period size: 43 Copynumber: 7.0 Consensus size: 43
10903950 AGGGTATAAG
* * * **
10903960 TTATGTAAGTTATGTACGTGTATGTAAGTTATGTACGTGTATAAA
1 TTATGTAAGTTATGTAAGT-TATGTAAGTTATGTAAGT-TTTGTA
* *
10904005 TTATGTAAGTTATGTACGTGTA--TAAGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGT-TATGTAAGTTATGTAAGTTTTGTA
* *
10904047 TTAAGTAAGTTATGTAAGTTGTGT-A-TTATGTAAGTTATT-TAA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGTT-TTGT-A
** * *
10904089 GTTATCAAAGTAATGTATGTTATGTAAG-T-TGTAAGTTATTATGTA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAG-T-TT-TGTA
*
10904134 TTATGTAAGTTATGTAAGTTATGTAAGTTAAATGT-A-TTATGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTT--ATGTAAGTTTTGTA
* * * *
10904177 GGTTATGTAAGTTGTGTAAGATATTTAAGTTATGTGAGTTTTGTA
1 --TTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTTTGTA
*
10904222 TTATGTAAGTTATGTAAGTTATGTAGGTTATGTAAGTTTTGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTTTGTA
10904265 ATGTACAAGT
Statistics
Matches: 214, Mismatches: 27, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
41 13 0.06
42 24 0.11
43 84 0.39
44 29 0.14
45 59 0.28
46 1 0.00
47 1 0.00
48 3 0.01
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTTTGTA
Found at i:10904447 original size:13 final size:13
Alignment explanation
Indices: 10904429--10904462 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
10904419 ATATAATTAT
10904429 TAATAATATTTAA
1 TAATAATATTTAA
10904442 TAATAAT-TTTAA
1 TAATAATATTTAA
10904454 T-ATAATATT
1 TAATAATATT
10904463 ATTATTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.25
12 8 0.40
13 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATATTTAA
Found at i:10905318 original size:31 final size:31
Alignment explanation
Indices: 10905280--10905359 Score: 142
Period size: 31 Copynumber: 2.6 Consensus size: 31
10905270 TATTTCCTAT
10905280 TTAGCAGCAAAAACCAATAGAAGGTACCATC
1 TTAGCAGCAAAAACCAATAGAAGGTACCATC
*
10905311 TTAGCAGCAAAAACCAATAGAAGGTGCCATC
1 TTAGCAGCAAAAACCAATAGAAGGTACCATC
*
10905342 TTAGCTGCAAAAACCAAT
1 TTAGCAGCAAAAACCAAT
10905360 TAAATCCAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.17
Consensus pattern (31 bp):
TTAGCAGCAAAAACCAATAGAAGGTACCATC
Found at i:10907316 original size:39 final size:39
Alignment explanation
Indices: 10907280--10907359 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
10907270 CCTAACCCAT
*
10907280 AACCCCTAAATC-CCCTTAACCCTTAAAGCATAAACCCTA
1 AACCCCTAAATCTCCC-TAACCCCTAAAGCATAAACCCTA
*
10907319 AACCCCTAAATCTCCCTAACCCCTAAAGCATAACCCCTA
1 AACCCCTAAATCTCCCTAACCCCTAAAGCATAAACCCTA
10907358 AA
1 AA
10907360 AAAATTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 35 0.92
40 3 0.08
ACGTcount: A:0.39, C:0.40, G:0.03, T:0.19
Consensus pattern (39 bp):
AACCCCTAAATCTCCCTAACCCCTAAAGCATAAACCCTA
Found at i:10907671 original size:17 final size:15
Alignment explanation
Indices: 10907639--10907678 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
10907629 ACCATTCAAA
10907639 CCCTAAACCCCTAAC
1 CCCTAAACCCCTAAC
10907654 CCCTAAATCCCACTAAC
1 CCCTAAA-CCC-CTAAC
*
10907671 CCTTAAAC
1 CCCTAAAC
10907679 ATTAAATCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 7 0.32
16 4 0.18
17 11 0.50
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.17
Consensus pattern (15 bp):
CCCTAAACCCCTAAC
Found at i:10908049 original size:9 final size:9
Alignment explanation
Indices: 10908035--10908065 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
10908025 GTTAAACGAA
10908035 TCGAGTTAT
1 TCGAGTTAT
*
10908044 TCGAGTTAA
1 TCGAGTTAT
10908053 TCGAGTTAT
1 TCGAGTTAT
10908062 TCGA
1 TCGA
10908066 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:10908136 original size:9 final size:9
Alignment explanation
Indices: 10908119--10908155 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
10908109 TGAGTTTTCG
10908119 AATTCGAAT
1 AATTCGAAT
*
10908128 AACTCGAAT
1 AATTCGAAT
10908137 AATTCGAAT
1 AATTCGAAT
10908146 AATTCGAAT
1 AATTCGAAT
10908155 A
1 A
10908156 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10908401 original size:30 final size:31
Alignment explanation
Indices: 10908367--10908426 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
10908357 AAACCTTTTA
*
10908367 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
10908397 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
10908427 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:10908582 original size:19 final size:20
Alignment explanation
Indices: 10908527--10908581 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
10908517 CAAACTTTTA
10908527 TTCCCCAAAACTTTTTATTT
1 TTCCCCAAAACTTTTTATTT
10908547 TTCCCCAAAACTTTTTATTT
1 TTCCCCAAAACTTTTTATTT
*
10908567 TTCCCCTAAACTTTT
1 TTCCCCAAAACTTTT
10908582 ACTTCTCACC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (20 bp):
TTCCCCAAAACTTTTTATTT
Found at i:10909423 original size:113 final size:113
Alignment explanation
Indices: 10909245--10909643 Score: 418
Period size: 113 Copynumber: 3.5 Consensus size: 113
10909235 CTGAAAGCAC
* * * * *
10909245 AGAAAACGACGACGTTGGGCTTAGTTTTTTTTGCGGCGCTATTC-CAAAAACGCCGCTAAATCCC
1 AGAAAACGACGTCGTTCGGATTAG-GTTTTTTGCGGCGCT-TTCTCAAAAACGCCGCTAAAGCCC
* *
10909309 TAAGCATTAGCGGCGCTTCT-CTAGAAATGCCGCTAAATTCCCGAAAAGCTT
64 TAAGCATTAGCGGCGCTT-TATTAGAAACGCCGCTAAATTCCCG-AAAGCTT
* * * *
10909360 AG-AAACGATGTCGTT-GTACTTAGGTTTTTTGCGGCGCTTTTTCGAAAACGCCGCTAAAGCCCT
1 AGAAAACGACGTCGTTCGGA-TTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
* * *
10909423 AAGCATTAGCGGCGTTTTATTAAAAACGCCACT-AA-TCACTCGAAAG-TT
65 AAGCATTAGCGGCGCTTTATTAGAAACGCCGCTAAATTC-C-CGAAAGCTT
* * * * *
10909471 CAGAAAAACGGCGTCGTTGGGATTAGGCTTTTTGTGGCGCTTGCTCAAAAACGCCGCTAAAGCCC
1 -AG-AAAACGACGTCGTTCGGATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCC
* * *
10909536 TGAGCATTAACGGCGCTTTATTAGAAACGCCGCTAAATCCCCGAAAGCTT
64 TAAGCATTAGCGGCGCTTTATTAGAAACGCCGCTAAATTCCCGAAAGCTT
* * * *
10909586 GGCAAACGACGTCGTTCGGATTAGGTTTTTTTCGGTGCTTTCT-ATAAAACGCCGCTAA
1 AGAAAACGACGTCGTTCGGATTAGGTTTTTTGCGGCGCTTTCTCA-AAAACGCCGCTAA
10909644 TGATCGATCT
Statistics
Matches: 235, Mismatches: 36, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
111 4 0.02
112 13 0.06
113 108 0.46
114 100 0.43
115 9 0.04
116 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (113 bp):
AGAAAACGACGTCGTTCGGATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTA
AGCATTAGCGGCGCTTTATTAGAAACGCCGCTAAATTCCCGAAAGCTT
Found at i:10909679 original size:227 final size:227
Alignment explanation
Indices: 10909272--10909684 Score: 512
Period size: 227 Copynumber: 1.8 Consensus size: 227
10909262 GGCTTAGTTT
* * * *
10909272 TTTTTGCGGCGCTATTCCAAAAACGCCGCTAAATCCCTAAGCATTAGCGGCGCTTCTCTAGAAAT
1 TTTTTGCGGCGCTATGCCAAAAACGCCGCTAAAGCCCTAAGCATTAACGGCGCTTCTCTAGAAAC
* * * *
10909337 GCCGCTAAATTCCCGAAAAGCTTAGAAACGATGTCGTTGTACTTAGGTTTTTTGCGGCGCTTTTT
66 GCCGCTAAATCCCCGAAAAGCTTAGAAACGACGTCGTTGGACTTAGGTTTTTTGCGGCGCTTTCT
* * * *
10909402 CGAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCGTTTTATTAAAAACGCCACTAATCACTCGAA
131 AGAAAACGCCGCTAAAGACCTAAGCATTAGCGGCATTTTAGTAAAAACGCCACTAATCACTCGAA
10909467 AGTTCAGAAAAACGGCGTCGTTGGGATTAGGC
196 AGTTCAGAAAAACGGCGTCGTTGGGATTAGGC
* * *
10909499 TTTTTGTGGCGCT-TGCTCAAAAACGCCGCTAAAGCCCTGAGCATTAACGGCGCTT-TATTAGAA
1 TTTTTGCGGCGCTATGC-CAAAAACGCCGCTAAAGCCCTAAGCATTAACGGCGCTTCT-CTAGAA
* * *
10909562 ACGCCGCTAAATCCCCG-AAAGCTTGGCAAACGACGTCGTTCGGA-TTAGGTTTTTTTCGGTGCT
64 ACGCCGCTAAATCCCCGAAAAGCTTAG-AAACGACGTCGTT-GGACTTAGGTTTTTTGCGGCGCT
* * * * * * * *
10909625 TTCTATAAAACGCCGCTAATGATC-GATCTTTAGCGGCATTTTAGTAGCAAACGCCGCTAA
127 TTCTAGAAAACGCCGCTAAAGACCTAAGCATTAGCGGCATTTTAGTA-AAAACGCCACTAA
10909685 AGACGCCGCT
Statistics
Matches: 155, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
226 28 0.18
227 125 0.81
228 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (227 bp):
TTTTTGCGGCGCTATGCCAAAAACGCCGCTAAAGCCCTAAGCATTAACGGCGCTTCTCTAGAAAC
GCCGCTAAATCCCCGAAAAGCTTAGAAACGACGTCGTTGGACTTAGGTTTTTTGCGGCGCTTTCT
AGAAAACGCCGCTAAAGACCTAAGCATTAGCGGCATTTTAGTAAAAACGCCACTAATCACTCGAA
AGTTCAGAAAAACGGCGTCGTTGGGATTAGGC
Found at i:10911200 original size:36 final size:37
Alignment explanation
Indices: 10911122--10911201 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
10911112 TGAAATGTTT
10911122 ACTTTTTTCTAAACAACTTGTATAGTTCTTAAAGAGC
1 ACTTTTTTCTAAACAACTTGTATAGTTCTTAAAGAGC
10911159 ACTTTTTTCTAAACAACTTGTATAGTTCTTAAAGAGC
1 ACTTTTTTCTAAACAACTTGTATAGTTCTTAAAGAGC
10911196 -CTTTTT
1 ACTTTTT
10911202 GCATGGTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 6 0.14
37 37 0.86
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (37 bp):
ACTTTTTTCTAAACAACTTGTATAGTTCTTAAAGAGC
Found at i:10915993 original size:17 final size:17
Alignment explanation
Indices: 10915973--10916007 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10915963 AATGGCATAG
10915973 AAATAATAT-AAACAAAT
1 AAATAA-ATGAAACAAAT
10915990 AAATAAATGAAACAAAT
1 AAATAAATGAAACAAAT
10916007 A
1 A
10916008 TACATAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (17 bp):
AAATAAATGAAACAAAT
Found at i:10916195 original size:13 final size:13
Alignment explanation
Indices: 10916179--10916220 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 13
10916169 AATACACATG
10916179 AATTTATATATAA
1 AATTTATATATAA
*
10916192 AATTTAGATTATAAA
1 AATTTATA-TAT-AA
10916207 AATTTATATA-AA
1 AATTTATATATAA
10916219 AA
1 AA
10916221 AAATACATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 4 0.16
13 7 0.28
14 5 0.20
15 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (13 bp):
AATTTATATATAA
Found at i:10919163 original size:13 final size:13
Alignment explanation
Indices: 10919145--10919176 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
10919135 AAAATATATT
10919145 TATTAATTAAAAA
1 TATTAATTAAAAA
10919158 TATTAATTAAAAA
1 TATTAATTAAAAA
*
10919171 GATTAA
1 TATTAA
10919177 AAAAAACTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:10924006 original size:29 final size:29
Alignment explanation
Indices: 10923963--10924029 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
10923953 CATATGTATC
* *
10923963 TTATTATATATATATTTTAT-TTATTTTTA
1 TTATTATATACATATATTATATT-TTTTTA
10923992 -TATATATATACATATATTATATTTTTTTA
1 TTAT-TATATACATATATTATATTTTTTTA
10924021 TTATTATAT
1 TTATTATAT
10924030 TTATGCATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 3 0.09
29 25 0.76
30 5 0.15
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (29 bp):
TTATTATATACATATATTATATTTTTTTA
Found at i:10924015 original size:31 final size:33
Alignment explanation
Indices: 10923967--10924040 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 33
10923957 TGTATCTTAT
* *
10923967 TATATATATATTTTATTTATTT-TTA-TATATA
1 TATACATATATTATATTTATTTATTATTATATA
* *
10923998 TATACATATATTATATTTTTTTATTATTATATT
1 TATACATATATTATATTTATTTATTATTATATA
*
10924031 TATGCATATA
1 TATACATATA
10924041 CACGCATATG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 19 0.53
32 3 0.08
33 14 0.39
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (33 bp):
TATACATATATTATATTTATTTATTATTATATA
Found at i:10929121 original size:37 final size:37
Alignment explanation
Indices: 10929057--10929213 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
10929047 TACGTATGAT
*
10929057 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
10929093 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
10929130 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
10929173 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
10929213 C
1 C
10929214 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:10929183 original size:46 final size:46
Alignment explanation
Indices: 10929130--10929496 Score: 437
Period size: 46 Copynumber: 7.6 Consensus size: 46
10929120 TAAGTGTAGC
* **
10929130 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
10929176 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
10929222 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
10929274 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
10929326 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * *
10929372 AACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
10929418 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
10929470 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10929497 AGTACTCAAA
Statistics
Matches: 290, Mismatches: 18, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:10929249 original size:52 final size:52
Alignment explanation
Indices: 10929173--10929490 Score: 417
Period size: 52 Copynumber: 6.3 Consensus size: 52
10929163 TAGCTAAAGC
* *
10929173 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
10929226 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
10929278 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
10929330 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
10929376 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
10929422 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
10929474 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
10929491 ATCAGAAGTA
Statistics
Matches: 238, Mismatches: 17, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 83 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:10929438 original size:196 final size:196
Alignment explanation
Indices: 10929130--10929482 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
10929120 TAAGTGTAGC
* * * * * *
10929130 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
10929195 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
10929260 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
10929325 T
196 T
*
10929326 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
*
10929391 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
10929456 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
10929483 ATCACTTGAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATAACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:10929486 original size:98 final size:97
Alignment explanation
Indices: 10929130--10929496 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
10929120 TAAGTGTAGC
* * * *
10929130 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
10929195 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
10929229 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
10929294 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
10929333 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATAACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
10929393 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
10929425 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
10929490 GATCAGA
65 GATCAGA
10929497 AGTACTCAAA
Statistics
Matches: 238, Mismatches: 17, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 148 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:10932604 original size:52 final size:48
Alignment explanation
Indices: 10932585--10932885 Score: 366
Period size: 46 Copynumber: 6.3 Consensus size: 48
10932575 TGACAAGTGG
* *
10932585 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
* **
10932631 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
* *
10932679 GTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 ----AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
10932729 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
10932781 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
10932827 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
10932873 AAAGTGATAAGTG
1 AAAGTGATAAGTG
10932886 GCTACACTTA
Statistics
Matches: 226, Mismatches: 17, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
46 141 0.62
52 85 0.38
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:10932639 original size:98 final size:98
Alignment explanation
Indices: 10932519--10932874 Score: 640
Period size: 98 Copynumber: 3.6 Consensus size: 98
10932509 TTTGAGTACT
*
10932519 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
10932584 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
10932617 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
10932682 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
10932715 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
10932780 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
10932813 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAA
10932875 AGTGATAAGT
Statistics
Matches: 249, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 249 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:10934713 original size:50 final size:50
Alignment explanation
Indices: 10934659--10935339 Score: 389
Period size: 50 Copynumber: 13.6 Consensus size: 50
10934649 GTAGCGGAGC
* * *
10934659 AGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAACGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * * * * * * ** **
10934709 AGATTGAAGCCACAACGACAGATCTTACTTCCCTGGC-GATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAG-CGCAATTAAAA
* * * *
10934759 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCAACAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * ** * * * ** **
10934809 TGATTGAAGCCACAACGGCGGATCTTACTTCCTTGGC-GATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAG-CGCAATTAAAA
* * *
10934859 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATT-AAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * * ** * * * **** **
10934908 AGATTGAAGCCACAACGGTGAATCTTACTTCCTTGGCGGTGCAGCGGAGC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * *
10934958 AGATTGAAGTCACAACGGCGGATCTGGTTTCCTCGACAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * * ** **** **
10935008 AGATTGAAGCCACAACGGCGGATCTTATTTCCCTGGCGGTACAGCGGAGC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * *
10935058 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCAACAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * ** * * * ** **
10935108 GGATTGAAGCCACAACGGCGGATCTTACTTCCTTGGC-GATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAG-CGCAATTAAAA
* * *
10935158 AGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGTAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * * * * * * * **** **
10935208 AGATTGAAGCCACAACAGCGGATCTTACTTCTCTGGCGGTGCAGCGGAGC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* *
10935258 AGATTGAAGTCACAACGGCAGATCTGATTTCCCCGACAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
* * *
10935308 AGATTAAAGCCACAACGACGGATCTTATTTCC
1 AGATTGAAGCCACAACGGCGGATCTGATTTCC
10935340 TTAGTGGTGC
Statistics
Matches: 432, Mismatches: 192, Indels: 14
0.68 0.30 0.02
Matches are distributed among these distances:
49 34 0.08
50 395 0.91
51 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGGATCTGATTTCCCCGACAGCGCAATTAAAA
Found at i:10935366 original size:100 final size:100
Alignment explanation
Indices: 10934625--10935351 Score: 1116
Period size: 100 Copynumber: 7.3 Consensus size: 100
10934615 GGTTGAAAAT
* * * * *
10934625 GGCGGATCTTATTTCCTTAGCGTTGTAGCGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTC
1 GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
*
10934690 CCCGACAACGCAATTAAAAAGATTGAAGCCACAAC
66 CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* * * * *
10934725 GACAGATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
1 GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
* *
10934790 CCCAACAGCGCAATTAAAATGATTGAAGCCACAAC
66 CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* *
10934825 GGCGGATCTTACTTCCTTGGCGATGCAGTGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
1 GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
10934890 CCCGACAGCGCAATT-AAAAGATTGAAGCCACAAC
66 CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* * *
10934924 GGTGAATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTC
1 GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
*
10934989 CTCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
66 CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* * *
10935024 GGCGGATCTTATTTCCCTGGCGGTACAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
1 GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
* *
10935089 CCCAACAGCGCAATTAAAAGGATTGAAGCCACAAC
66 CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* * *
10935124 GGCGGATCTTACTTCCTTGGCGATGCAGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTC
1 GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
*
10935189 CCCGACAGCGTAATTAAAAAGATTGAAGCCACAAC
66 CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* *
10935224 AGCGGATCTTACTT-CTCTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGATTT
1 GGCGGATCTTACTTCCT-TGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTT
*
10935288 CCCCGACAGCGCAATTAAAAAGATTAAAGCCACAAC
65 CCCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
* * * *
10935324 GACGGATCTTATTTCCTTAGTGGTGCAG
1 GGCGGATCTTACTTCCTTGGCGGTGCAG
10935352 TTGAACAAGT
Statistics
Matches: 571, Mismatches: 53, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
99 94 0.16
100 475 0.83
101 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (100 bp):
GGCGGATCTTACTTCCTTGGCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTC
CCCGACAGCGCAATTAAAAAGATTGAAGCCACAAC
Found at i:10936807 original size:33 final size:33
Alignment explanation
Indices: 10936769--10936840 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 33
10936759 TGTATCTTAT
10936769 TATATATATATTTTATTTATT-TATATATATATACA
1 TATAT-TATATTTT-TTTATTAT-TATATATATACA
* *
10936804 TATATTATATTTTTTTATTATTATATTTATGCA
1 TATATTATATTTTTTTATTATTATATATATACA
10936837 TATA
1 TATA
10936841 CACGCATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 20 0.59
34 9 0.26
35 5 0.15
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (33 bp):
TATATTATATTTTTTTATTATTATATATATACA
Found at i:10936808 original size:29 final size:29
Alignment explanation
Indices: 10936765--10936829 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
10936755 CATATGTATC
*
10936765 TTATTATAT--ATATATTTTATTTATTTA
1 TTATTATATACATATATTATATTTATTTA
*
10936792 -TATATATATACATATATTATATTTTTTTA
1 TTAT-TATATACATATATTATATTTATTTA
10936821 TTATTATAT
1 TTATTATAT
10936830 TTATGCATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 3 0.09
27 5 0.16
29 21 0.66
30 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (29 bp):
TTATTATATACATATATTATATTTATTTA
Found at i:10938677 original size:22 final size:22
Alignment explanation
Indices: 10938633--10938679 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
10938623 ACAATATAAT
* *
10938633 AACGAAATGGTAGCAAAATAAC
1 AACGAAATAGTAGCAAAACAAC
*
10938655 AACGAAATAGTAGCGAAACAAC
1 AACGAAATAGTAGCAAAACAAC
10938677 AAC
1 AAC
10938680 AAAACATCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.11
Consensus pattern (22 bp):
AACGAAATAGTAGCAAAACAAC
Found at i:10940930 original size:20 final size:20
Alignment explanation
Indices: 10940890--10940933 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
10940880 TCATACATGA
*
10940890 AATTTAAAAAAATAATTCTT
1 AATTTAAAAAAATAATACTT
10940910 AATTTAAAGAAAATAA-ACTT
1 AATTTAAA-AAAATAATACTT
10940930 AATT
1 AATT
10940934 ATCTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (20 bp):
AATTTAAAAAAATAATACTT
Found at i:10946528 original size:14 final size:15
Alignment explanation
Indices: 10946509--10946546 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
10946499 TTTCCAGTCT
*
10946509 TTTTTTGCCTA-AAA
1 TTTTTTGCATACAAA
*
10946523 TTTTTTGTATACAAA
1 TTTTTTGCATACAAA
10946538 TTTTTTGCA
1 TTTTTTGCA
10946547 CACCTAATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (15 bp):
TTTTTTGCATACAAA
Found at i:10950205 original size:20 final size:20
Alignment explanation
Indices: 10950159--10950206 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
10950149 TGTGCCCAGT
*
10950159 TATGCAC-TCTGGTGTCTTG
1 TATGCACTTCTGGTGTCCTG
*
10950178 TTTGCACTTC-GGTGCTCCTG
1 TATGCACTTCTGGTG-TCCTG
10950198 TATGCACTT
1 TATGCACTT
10950207 TCTTGCCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.10, C:0.25, G:0.23, T:0.42
Consensus pattern (20 bp):
TATGCACTTCTGGTGTCCTG
Found at i:10952003 original size:14 final size:14
Alignment explanation
Indices: 10951981--10952010 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10951971 AATGATTAAA
10951981 AAATATAATTAACT
1 AAATATAATTAACT
*
10951995 AAATTTAATTAACT
1 AAATATAATTAACT
10952009 AA
1 AA
10952011 TGAACACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATATAATTAACT
Found at i:10953126 original size:16 final size:17
Alignment explanation
Indices: 10953105--10953142 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
10953095 ATGATTTTGA
10953105 AAAATATTT-AATATAT
1 AAAATATTTAAATATAT
10953121 AAAATATTTAAATATAT
1 AAAATATTTAAATATAT
*
10953138 CAAAT
1 AAAAT
10953143 GAACTAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATATTTAAATATAT
Found at i:10954691 original size:94 final size:93
Alignment explanation
Indices: 10954514--10954791 Score: 387
Period size: 94 Copynumber: 3.0 Consensus size: 93
10954504 AGCAACGAAC
* * *
10954514 ATGTAACACCCTTAACCCGTATCAGTCGCCGGAATAAAGTTACAGAGCATTACCAGACAAATGGA
1 ATGTAACACCC-TAACCCGTATCCGTCGCCAGAATAAGGTTACAGAGCATTACCAGACAAATGGA
*
10954579 ATAATAAACCATTCAAATCATACATCCAA
65 ATAGTAAACCATTCAAATCATACATCCAA
* * *
10954608 ATGTAACATCCCTAACCCGTATCCGTCGTCAGAATAAGGTTACGGAGCATTACTAGGACAAATGG
1 ATGTAACA-CCCTAACCCGTATCCGTCGCCAGAATAAGGTTACAGAGCATTACCA-GACAAATGG
10954673 AATAGTAAACCATT-AAATCATACATCCAA
64 AATAGTAAACCATTCAAATCATACATCCAA
* * * * * **
10954702 ATGTAACACCCCTAACTCGTATACGTCGCCAAAACAAGGTTATAGAGCATTACCAGACAAACAGA
1 ATGTAACA-CCCTAACCCGTATCCGTCGCCAGAATAAGGTTACAGAGCATTACCAGACAAATGGA
10954767 ATAGTAAACCATTCAAATCATACAT
65 ATAGTAAACCATTCAAATCATACAT
10954792 AAATACAAAC
Statistics
Matches: 163, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
93 21 0.13
94 117 0.72
95 25 0.15
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.22
Consensus pattern (93 bp):
ATGTAACACCCTAACCCGTATCCGTCGCCAGAATAAGGTTACAGAGCATTACCAGACAAATGGAA
TAGTAAACCATTCAAATCATACATCCAA
Found at i:10956169 original size:33 final size:33
Alignment explanation
Indices: 10956094--10956213 Score: 156
Period size: 33 Copynumber: 3.7 Consensus size: 33
10956084 ATACTCACTC
* *
10956094 GAGCCAATCCATCCATCACACCAATG--C-TAA
1 GAGCTAATCCAACCATCACACCAATGCTCATAA
*
10956124 GATCTAATCCAACCATCACACCAATGCTCATAA
1 GAGCTAATCCAACCATCACACCAATGCTCATAA
* *
10956157 GAGCTAAACCAACCATGACACCAATGCTCATAA
1 GAGCTAATCCAACCATCACACCAATGCTCATAA
* *
10956190 GAGCTAATCCAACTAGCACACCAA
1 GAGCTAATCCAACCATCACACCAA
10956214 ATAGAGAGTA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
30 23 0.30
32 1 0.01
33 53 0.69
ACGTcount: A:0.40, C:0.33, G:0.10, T:0.17
Consensus pattern (33 bp):
GAGCTAATCCAACCATCACACCAATGCTCATAA
Found at i:10961948 original size:42 final size:43
Alignment explanation
Indices: 10961896--10962018 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 43
10961886 TGCTAAACAG
*
10961896 AAACCC-ATAAGGGTTGAAC-GAAAGCTCATAAGAGCTAACGA
1 AAACCCAATAAGGGTTAAACTGAAAGCTCATAAGAGCTAACGA
* * * *
10961937 AAACCTAATAAGGGTTAAACTG-AAGCTCAAAAGAGCTGAATGG
1 AAACCCAATAAGGGTTAAACTGAAAGCTCATAAGAGCT-AACGA
* *
10961980 AAACCCAAT-AGGGTTAAACTGAAA-CTCATATGAGTTAAC
1 AAACCCAATAAGGGTTAAACTGAAAGCTCATAAGAGCTAAC
10962019 TGAAGCTTAT
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
41 7 0.10
42 47 0.69
43 14 0.21
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (43 bp):
AAACCCAATAAGGGTTAAACTGAAAGCTCATAAGAGCTAACGA
Done.