Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 38 of 228
Found at i:11509972 original size:9 final size:9
Alignment explanation
Indices: 11509958--11509999 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
11509948 CACATCAAAT
11509958 ATATTAAAA
1 ATATTAAAA
11509967 ATATTAAAA
1 ATATTAAAA
11509976 ATATTAAAA
1 ATATTAAAA
11509985 A-ATTTAAAA
1 ATA-TTAAAA
*
11509994 AAATTA
1 ATATTA
11510000 TTTATACTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 1 0.03
9 29 0.94
10 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
ATATTAAAA
Found at i:11512880 original size:58 final size:58
Alignment explanation
Indices: 11512742--11512884 Score: 207
Period size: 59 Copynumber: 2.4 Consensus size: 58
11512732 TGGCTTGCGG
*
11512742 TTGCGGTTGCTTTTAGTGCCCAAACAAATTCAATCCTTGACATGCTGGTTATTGTGAC
1 TTGCGGTTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTTATTGTGAC
* * * * *
11512800 TTGTGGTTTACTTTTAGTGCCAAAACAAATTTAATTCTTGACATGCTGG-TAGTTGTGGC
1 TTGCGG-TTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTTA-TTGTGAC
11512859 TTGCGGTTGCTTTTAGTGCCAAAACA
1 TTGCGGTTGCTTTTAGTGCCAAAACA
11512885 TAGCAACTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
58 26 0.35
59 49 0.65
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (58 bp):
TTGCGGTTGCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTTATTGTGAC
Found at i:11514182 original size:121 final size:120
Alignment explanation
Indices: 11514050--11514277 Score: 420
Period size: 121 Copynumber: 1.9 Consensus size: 120
11514040 GTATTGTAGT
*
11514050 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTA
1 ATTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTA
*
11514115 TATATTTTTATTAAATTATATTTAATAGTAATTATGTTAAAATTATATTTTATAGC
66 TATA-TTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGC
*
11514171 ATTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAATAATTTTATTAAATTA
1 ATTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTA
11514236 TATATTTTATTAAATTATATTTAATAATAATTATGTTAAAAT
66 TATATTTTATTAAATTATATTTAATAATAATTATGTTAAAAT
11514278 ATGATTAAAT
Statistics
Matches: 104, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
120 37 0.36
121 67 0.64
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50
Consensus pattern (120 bp):
ATTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTA
TATATTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTATAGC
Found at i:11514242 original size:17 final size:17
Alignment explanation
Indices: 11514222--11514255 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
11514212 AATATTAATA
11514222 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
11514239 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
11514256 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:11514329 original size:6 final size:6
Alignment explanation
Indices: 11514318--11514346 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
11514308 AATCTTATTA
11514318 AATAAC AATAAC AATAAC AATAAC AATAA
1 AATAAC AATAAC AATAAC AATAAC AATAA
11514347 TCATCTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAC
Found at i:11514516 original size:16 final size:16
Alignment explanation
Indices: 11514495--11514579 Score: 143
Period size: 16 Copynumber: 5.3 Consensus size: 16
11514485 AGGATTACAT
*
11514495 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
11514511 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
11514527 ATTACGCCTCTATTTC
1 ATTACGCCTCTATTCC
*
11514543 ATTACGCTTCTATTCC
1 ATTACGCCTCTATTCC
11514559 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
11514575 ATTAC
1 ATTAC
11514580 AGCGAACCAA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 64 1.00
ACGTcount: A:0.20, C:0.33, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:11517021 original size:102 final size:102
Alignment explanation
Indices: 11516845--11517188 Score: 489
Period size: 102 Copynumber: 3.4 Consensus size: 102
11516835 TATCGATGAA
* *
11516845 CACGTGTGTAGTACTGTGTGAAGGCTACTATGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
11516910 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
* *
11516947 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTATAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
11517012 TAAGTGAAGGCTACTTTGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
*** * *
11517049 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-C-AGTAAAACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA-TAAATGATGGTCACATGTGTAGTA
* * * *
11517112 CTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGAT
65 CTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGT
* *
11517149 TACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
11517189 ATGATAAAAC
Statistics
Matches: 220, Mismatches: 18, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
100 39 0.18
101 43 0.20
102 138 0.63
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
Found at i:11517115 original size:50 final size:50
Alignment explanation
Indices: 11516845--11517182 Score: 374
Period size: 51 Copynumber: 6.7 Consensus size: 50
11516835 TATCGATGAA
* * * ***
11516845 CACGTGTGTAGTACTGTGTGAAGGCTACTATGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * *
11516896 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGT
* * ***
11516947 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * ** *
11516998 CACATGTATAGTACTAAGTGAAGGCTACTTTGTGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGT
* *
11517049 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACAGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
11517099 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
11517149 TACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
11517183 TATCGAATGA
Statistics
Matches: 240, Mismatches: 40, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
49 6 0.03
50 86 0.36
51 141 0.59
52 4 0.02
53 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
Found at i:11517448 original size:37 final size:38
Alignment explanation
Indices: 11517380--11517452 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
11517370 ATGTGTGGAA
* *
11517380 TTGAATTAAATATTGACTTGAAAATGGAAAAGTGAATT
1 TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAATT
* *
11517418 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAA
11517453 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (38 bp):
TTGAATTAAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:11519776 original size:310 final size:310
Alignment explanation
Indices: 11519160--11519778 Score: 967
Period size: 310 Copynumber: 2.0 Consensus size: 310
11519150 CTGATACCAG
* *
11519160 TTTGTTAAAAATAGAATGTCGGTAATGACAATGTATCACAAAGAAAAAGAGAGAGAAAAATAAAA
1 TTTGTTAAAAATAGAATGTCGGTAATAACAATGTATCACAAAGAAAAAGAGAGACAAAAATAAAA
* * * *
11519225 AACACACAGATTTTACGTGAAAATACTTTCGTGAAAAAGCCACGGGGCAGAGTAGAAGATAATTC
66 AACACACAAATTTTACGTGAAAATACTTTCGGGAAAAAACCACGGGGCAGAGGAGAAGATAATTC
* * * *
11519290 ACTATGTCGAATTCGAATAATTACTCGAGGAGTAGACTATGTCTATTTATAGGCTTGTAAAATCA
131 ACTATGTCGAATTCAAATAATTACTAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAACCA
*
11519355 TATTCTAATAGGAGTGTGTAAGAGTGAAACACCTTATTCTAATCAATATCAAATAGAAGGAGTTT
196 TATTCTAATAGGAATGTGTAAGAGTGAAACACCTTATTCTAATCAATATCAAATAGAAGGAGTTT
**
11519420 AATGTGGTTTAAAAAACCTTATTCTAAAATAAAATAAAAGAAGTGTAGTA
261 AATAAGGTTTAAAAAACCTTATTCTAAAATAAAATAAAAGAAGTGTAGTA
* * * *
11519470 TTTGTTAGAAATAGAATGTTGGTAATAACAATGTATCGCAAAGAAAAAGAGAGACAAAAATAAAG
1 TTTGTTAAAAATAGAATGTCGGTAATAACAATGTATCACAAAGAAAAAGAGAGACAAAAATAAAA
* *
11519535 AACACACAAATTTTATGTGGAAACT-CTTTCGGGAAAAAAACCAC-GGGCAGAGGAGAAGATAAT
66 AACACACAAATTTTACGT-GAAAATACTTTCGGG-AAAAAACCACGGGGCAGAGGAGAAGATAAT
11519598 TCACTATGTCGAATTCAAATAATTA-TAAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAA
129 TCACTATGTCGAATTCAAATAATTACT-AGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAA
* * * *
11519662 CCATATTCTAATATGAATGTAGTAAGATTGAAATACCTTATTCTAATCAATATCAAATAGATGGA
193 CCATATTCTAATAGGAATGT-GTAAGAGTGAAACACCTTATTCTAATCAATATCAAATAGAAGGA
11519727 GTTTAATAAGGTTTAAAAAACCTTATTCTAAAATAAAATAAAA-AAGTGTAGT
257 GTTTAATAAGGTTTAAAAAACCTTATTCTAAAATAAAATAAAAGAAGTGTAGT
11519779 TCTATAGGGA
Statistics
Matches: 282, Mismatches: 23, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
309 1 0.00
310 185 0.66
311 96 0.34
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (310 bp):
TTTGTTAAAAATAGAATGTCGGTAATAACAATGTATCACAAAGAAAAAGAGAGACAAAAATAAAA
AACACACAAATTTTACGTGAAAATACTTTCGGGAAAAAACCACGGGGCAGAGGAGAAGATAATTC
ACTATGTCGAATTCAAATAATTACTAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAACCA
TATTCTAATAGGAATGTGTAAGAGTGAAACACCTTATTCTAATCAATATCAAATAGAAGGAGTTT
AATAAGGTTTAAAAAACCTTATTCTAAAATAAAATAAAAGAAGTGTAGTA
Found at i:11521822 original size:51 final size:51
Alignment explanation
Indices: 11521760--11521889 Score: 179
Period size: 55 Copynumber: 2.5 Consensus size: 51
11521750 AAAATAGTTG
* * *
11521760 AAAGCTACAAAAGAGCTAATATATCAATATTTGGTACTGCGAAATTAGATA
1 AAAGCTCCAAAAGAGCTAATATATCAATATTTGGTACTACAAAATTAGATA
*
11521811 AAAGCTCCAAAAGAGCTAGCTAATATATCAATATTTGGTACTACAAAATTAGATG
1 AAAGCTCC-AAA-AG--AGCTAATATATCAATATTTGGTACTACAAAATTAGATA
*
11521866 AAAGCTCCAGAAGAGCTAATATAT
1 AAAGCTCCAAAAGAGCTAATATAT
11521890 TAGTATCTGA
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
51 18 0.26
52 3 0.04
53 4 0.06
54 2 0.03
55 43 0.61
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (51 bp):
AAAGCTCCAAAAGAGCTAATATATCAATATTTGGTACTACAAAATTAGATA
Found at i:11521844 original size:55 final size:55
Alignment explanation
Indices: 11521773--11521883 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
11521763 GCTACAAAAG
* *
11521773 AGCTAATATATCAATATTTGGTACTGCGAAATTAGATAAAAGCTCCAAAAGAGCT
1 AGCTAATATATCAATATTTGGTACTACAAAATTAGATAAAAGCTCCAAAAGAGCT
* *
11521828 AGCTAATATATCAATATTTGGTACTACAAAATTAGATGAAAGCTCCAGAAGAGCT
1 AGCTAATATATCAATATTTGGTACTACAAAATTAGATAAAAGCTCCAAAAGAGCT
11521883 A
1 A
11521884 ATATATTAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.27
Consensus pattern (55 bp):
AGCTAATATATCAATATTTGGTACTACAAAATTAGATAAAAGCTCCAAAAGAGCT
Found at i:11531005 original size:9 final size:9
Alignment explanation
Indices: 11530988--11531030 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
11530978 GATAACTTTA
11530988 AAAAATTTT
1 AAAAATTTT
*
11530997 AACAATTTT
1 AAAAATTTT
11531006 AAAAATTTT
1 AAAAATTTT
*
11531015 AACAATTTT
1 AAAAATTTT
11531024 AAAAATT
1 AAAAATT
11531031 AACATTCGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAAATTTT
Found at i:11531011 original size:18 final size:18
Alignment explanation
Indices: 11530988--11531030 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
11530978 GATAACTTTA
11530988 AAAAATTTTAACAATTTT
1 AAAAATTTTAACAATTTT
11531006 AAAAATTTTAACAATTTT
1 AAAAATTTTAACAATTTT
11531024 AAAAATT
1 AAAAATT
11531031 AACATTCGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAAATTTTAACAATTTT
Found at i:11531281 original size:29 final size:29
Alignment explanation
Indices: 11531248--11531307 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
11531238 AAGTAAAATT
11531248 TAACATAATTTATAAACATAAACCACACC
1 TAACATAATTTATAAACATAAACCACACC
11531277 TAACATAATTTATAAACATAAACCACACC
1 TAACATAATTTATAAACATAAACCACACC
11531306 TA
1 TA
11531308 CCTGTCCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.25
Consensus pattern (29 bp):
TAACATAATTTATAAACATAAACCACACC
Found at i:11532315 original size:30 final size:30
Alignment explanation
Indices: 11532255--11532315 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
11532245 ATGTCTATGT
* **
11532255 AAATTATCATTGGTTTGGGATTTTTCTGGA
1 AAATTATCATTGGTCTGGGATTTTGATGGA
11532285 AAATTAAT-ATTGGTCTGGGATTTTGATGGA
1 AAATT-ATCATTGGTCTGGGATTTTGATGGA
11532315 A
1 A
11532316 GAGTATTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.43
Consensus pattern (30 bp):
AAATTATCATTGGTCTGGGATTTTGATGGA
Found at i:11545950 original size:41 final size:41
Alignment explanation
Indices: 11545900--11546084 Score: 243
Period size: 41 Copynumber: 4.5 Consensus size: 41
11545890 GACTTTATGT
*
11545900 CTAGCAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAAC
1 CTAGAAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAAC
*
11545941 CTAGAAGGCTAAGTGCCGATGATCAGAATCAGGTTATAAAC
1 CTAGAAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAAC
* * *
11545982 CTAGCAGGCT-AGTACCGGTGATCTGAATCAGGTTATAAAC
1 CTAGAAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAAC
* *
11546022 CTAGCAA-GCTAAGTGCCGGTGATCTGAATCA-GTCTATAAGC
1 CTAG-AAGGCTAAGTGCCGGTGATCAGAATCAGGT-TATAAAC
*
11546063 CTAGCAA-GATAAGTGCCGGTGA
1 CTAG-AAGGCTAAGTGCCGGTGA
11546085 ATAAGTTAAA
Statistics
Matches: 131, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 36 0.27
41 95 0.73
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (41 bp):
CTAGAAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAAC
Found at i:11546014 original size:81 final size:82
Alignment explanation
Indices: 11545900--11546084 Score: 259
Period size: 81 Copynumber: 2.3 Consensus size: 82
11545890 GACTTTATGT
*
11545900 CTAGCAGGCTAAGTGCCGGTGATCAGAATCAGGTTATAAACCTAG-AAGGCTAAGTGCCGATGAT
1 CTAGCAGGCTAAGTACCGGTGATCAGAATCAGGTTATAAACCTAGCAA-GCTAAGTGCCGATGAT
11545964 CAGAATCAGGT-TATAAAC
65 CAGAATCA-GTCTATAAAC
* *
11545982 CTAGCAGGCT-AGTACCGGTGATCTGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGGTGATC
1 CTAGCAGGCTAAGTACCGGTGATCAGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGATGATC
* *
11546046 TGAATCAGTCTATAAGC
66 AGAATCAGTCTATAAAC
* * *
11546063 CTAGCAAGATAAGTGCCGGTGA
1 CTAGCAGGCTAAGTACCGGTGA
11546085 ATAAGTTAAA
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
80 2 0.02
81 68 0.74
82 22 0.24
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (82 bp):
CTAGCAGGCTAAGTACCGGTGATCAGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGATGATC
AGAATCAGTCTATAAAC
Found at i:11553164 original size:73 final size:73
Alignment explanation
Indices: 11553080--11553227 Score: 287
Period size: 73 Copynumber: 2.0 Consensus size: 73
11553070 ATCAATATTG
11553080 AGACTTGTACCTCAAGTCTCGAGACTTACTATCCTGGTTTTTATTTTATATTAGGCCTCGAATGT
1 AGACTTGTACCTCAAGTCTCGAGACTTACTATCCTGGTTTTTATTTTATATTAGGCCTCGAATGT
*
11553145 TGTTTTTA
66 TGTTCTTA
11553153 AGACTTGTACCTCAAGTCTCGAGACTTACTATCCTGGTTTTTATTTTATATTAGGCCTCGAATGT
1 AGACTTGTACCTCAAGTCTCGAGACTTACTATCCTGGTTTTTATTTTATATTAGGCCTCGAATGT
11553218 TGTTCTTA
66 TGTTCTTA
11553226 AG
1 AG
11553228 CTCGTTTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (73 bp):
AGACTTGTACCTCAAGTCTCGAGACTTACTATCCTGGTTTTTATTTTATATTAGGCCTCGAATGT
TGTTCTTA
Found at i:11558524 original size:84 final size:84
Alignment explanation
Indices: 11558383--11558555 Score: 328
Period size: 84 Copynumber: 2.1 Consensus size: 84
11558373 TTCTTTTCCT
*
11558383 TTATTTTACATTAAGGTTTTGGGAAAGAAACATATGAGTGCCTTCAATTGATTTATCCTAGTTTT
1 TTATTTTACATTAAGGTTTTGGGAAAGAAACATATGAGTGCCTTCAATTGATTTATCCTAGTGTT
*
11558448 TGTCTGAGTATTATTATCA
66 TGTCTAAGTATTATTATCA
11558467 TTATTTTACATTAAGGTTTTGGGAAAGAAACATATGAGTGCCTTCAATTGATTTATCCTAGTGTT
1 TTATTTTACATTAAGGTTTTGGGAAAGAAACATATGAGTGCCTTCAATTGATTTATCCTAGTGTT
11558532 TGTCTAAGTATTATTATCA
66 TGTCTAAGTATTATTATCA
11558551 TTATT
1 TTATT
11558556 GGAATTAGTT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 87 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (84 bp):
TTATTTTACATTAAGGTTTTGGGAAAGAAACATATGAGTGCCTTCAATTGATTTATCCTAGTGTT
TGTCTAAGTATTATTATCA
Found at i:11565304 original size:4 final size:4
Alignment explanation
Indices: 11565295--11565321 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
11565285 AGCCAAAAGA
11565295 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
11565322 AATCTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:11580448 original size:21 final size:20
Alignment explanation
Indices: 11580399--11580449 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
11580389 GTGTTTAATT
11580399 AAAATTATATAAAGTATGAA
1 AAAATTATATAAAGTATGAA
11580419 AAAAGTTATATAATAAGTAT-AA
1 AAAA-TTATAT-A-AAGTATGAA
*
11580441 ATAATTATA
1 AAAATTATA
11580450 AAATTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.15
21 11 0.41
22 6 0.22
23 6 0.22
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (20 bp):
AAAATTATATAAAGTATGAA
Found at i:11582272 original size:12 final size:12
Alignment explanation
Indices: 11582252--11582286 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
11582242 TGAAACAAAA
*
11582252 ATATATATAAAT
1 ATATTTATAAAT
11582264 ATATTTATAAAT
1 ATATTTATAAAT
*
11582276 ACATTTATAAA
1 ATATTTATAAA
11582287 AATTATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATTTATAAAT
Found at i:11582432 original size:28 final size:27
Alignment explanation
Indices: 11582400--11582467 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
11582390 ACTATGAAAA
*
11582400 TATGTATATATATATATGTAAAAATATG
1 TATGTATATATATATATATAAAAA-ATG
*
11582428 TATGTATATAAATATATATAAAAAATG
1 TATGTATATATATATATATAAAAAATG
**
11582455 -AAATATATATATA
1 TATGTATATATATA
11582468 AAAAATATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 10 0.29
27 3 0.09
28 22 0.63
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (27 bp):
TATGTATATATATATATATAAAAAATG
Found at i:11582685 original size:21 final size:19
Alignment explanation
Indices: 11582658--11582712 Score: 83
Period size: 21 Copynumber: 2.8 Consensus size: 19
11582648 ATAATCTTCA
11582658 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
11582677 ATGACATATGCAATCTTGGAT
1 ATG--ATATGCAATCTTAGAT
11582698 ATGATATGCAATCTT
1 ATGATATGCAATCTT
11582713 GGAAGATATG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:11582722 original size:17 final size:19
Alignment explanation
Indices: 11582658--11582715 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 19
11582648 ATAATCTTCA
*
11582658 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTGGAT
11582677 ATGACATATGCAATCTTGGAT
1 ATG--ATATGCAATCTTGGAT
11582698 ATGATATGCAATCTTGGA
1 ATGATATGCAATCTTGGA
11582716 AGATATGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 18 0.50
21 18 0.50
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTGGAT
Found at i:11583004 original size:8 final size:9
Alignment explanation
Indices: 11582986--11583058 Score: 51
Period size: 9 Copynumber: 7.4 Consensus size: 9
11582976 AAAGTATTTT
11582986 AAAATTAAA
1 AAAATTAAA
11582995 AAAATTAAA
1 AAAATTAAA
11583004 AAAGTATTTTAAAA
1 AAA--A--TT-AAA
11583018 AAAATTTAAAA
1 AAAA-TT-AAA
*
11583029 AAAATT--T
1 AAAATTAAA
11583036 AAAATTAAA
1 AAAATTAAA
11583045 AAAATTTAAA
1 AAAA-TTAAA
11583055 AAAA
1 AAAA
11583059 GTATTTTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
7 6 0.11
9 16 0.30
10 11 0.20
11 12 0.22
12 1 0.02
13 2 0.04
14 6 0.11
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.27
Consensus pattern (9 bp):
AAAATTAAA
Found at i:11583005 original size:28 final size:28
Alignment explanation
Indices: 11582947--11583083 Score: 137
Period size: 28 Copynumber: 4.9 Consensus size: 28
11582937 ACCAAAAATT
11582947 TATTTTAAAAATTAAAATAAAAATTAAAAAAAG
1 TATTTT-AAAATT--AA-AAAAATT-AAAAAAG
11582980 TATTTTAAAATTAAAAAAATTAAAAAAG
1 TATTTTAAAATTAAAAAAATTAAAAAAG
*
11583008 TATTTT--AA--AAAAAATTTAAAAAA-
1 TATTTTAAAATTAAAAAAATTAAAAAAG
*
11583031 -AATTTAAAATTAAAAAAATTTAAAAAAAG
1 TATTTTAAAATTAAAAAAA-TT-AAAAAAG
11583060 TATTTTAAAA-TAAAAAAA-TAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAA
11583084 TATTTATTAT
Statistics
Matches: 92, Mismatches: 4, Indels: 23
0.77 0.03 0.19
Matches are distributed among these distances:
22 4 0.04
24 16 0.17
26 13 0.14
27 3 0.03
28 19 0.21
29 15 0.16
30 10 0.11
32 6 0.07
33 6 0.07
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (28 bp):
TATTTTAAAATTAAAAAAATTAAAAAAG
Found at i:11583029 original size:52 final size:52
Alignment explanation
Indices: 11582965--11583074 Score: 161
Period size: 52 Copynumber: 2.1 Consensus size: 52
11582955 AAATTAAAAT
*
11582965 AAAAATTAAAAAAAGTATTTTAAAATTAAAAAAA-TT-AAAAAAGTATTTTAAA
1 AAAAATTAAAAAAA--AATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAA
*
11583017 AAAAATTTAAAAAAAATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAA
1 AAAAATTAAAAAAAAATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAA
11583069 ATAAAA
1 A-AAAA
11583075 AAATAAAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
50 17 0.32
51 2 0.04
52 30 0.57
53 4 0.08
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (52 bp):
AAAAATTAAAAAAAAATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAA
Found at i:11583057 original size:29 final size:27
Alignment explanation
Indices: 11582958--11583078 Score: 78
Period size: 27 Copynumber: 4.6 Consensus size: 27
11582948 ATTTTAAAAA
* * *
11582958 TTAAAAT--AAAAATTAAAAAAAGTATT
1 TTAAAATAAAAAAATT-TAAAAAGAAAT
* *
11582984 TTAAAATTAAAAAAATTAAAAAAG-TAT
1 TTAAAA-TAAAAAAATTTAAAAAGAAAT
*
11583011 TT--TA-AAAAAAATTTAAAAA-AAAT
1 TTAAAATAAAAAAATTTAAAAAGAAAT
11583034 TTAAAATTAAAAAAATTTAAAAA-AAGTATT
1 TTAAAA-TAAAAAAATTTAAAAAGAA--A-T
11583064 TTAAAATAAAAAAAT
1 TTAAAATAAAAAAAT
11583079 AAAAATATTT
Statistics
Matches: 78, Mismatches: 6, Indels: 19
0.76 0.06 0.18
Matches are distributed among these distances:
23 18 0.23
25 2 0.03
26 6 0.08
27 21 0.27
28 7 0.09
29 17 0.22
30 7 0.09
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
TTAAAATAAAAAAATTTAAAAAGAAAT
Found at i:11583058 original size:11 final size:11
Alignment explanation
Indices: 11582992--11583039 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
11582982 TTTTAAAATT
11582992 AAAAAAA-TTA
1 AAAAAAATTTA
*
11583002 AAAAAGTATTTTA
1 AAAAA--AATTTA
11583015 AAAAAAATTTA
1 AAAAAAATTTA
11583026 AAAAAAATTTA
1 AAAAAAATTTA
11583037 AAA
1 AAA
11583040 TTAAAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
10 5 0.15
11 19 0.58
12 1 0.03
13 8 0.24
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
AAAAAAATTTA
Found at i:11583083 original size:52 final size:50
Alignment explanation
Indices: 11582965--11583089 Score: 155
Period size: 52 Copynumber: 2.4 Consensus size: 50
11582955 AAATTAAAAT
* *
11582965 AAAAATTAAAAAAAGTATTTTAAAATTAAAAAAATTAAAAAAGTATTTTAA
1 AAAAAATAAAAAAAATA-TTTAAAATTAAAAAAATTAAAAAAGTATTTTAA
*
11583016 AAAAAATTTAAAAAAA-ATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAA
1 AAAAAA-TAAAAAAAATATTTAAAATTAAAAAAA-TT-AAAAAAGTATTTTAA
11583068 AATAAAA-AAATAAAAATATTTA
1 AA-AAAATAAA-AAAAATATTTA
11583090 TTATTCGGGC
Statistics
Matches: 64, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
50 16 0.25
51 10 0.16
52 29 0.45
53 9 0.14
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (50 bp):
AAAAAATAAAAAAAATATTTAAAATTAAAAAAATTAAAAAAGTATTTTAA
Found at i:11583923 original size:28 final size:27
Alignment explanation
Indices: 11583872--11583924 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
11583862 TTCAACATGA
*
11583872 TTTGTATATATTCTTTGATATCACTAT
1 TTTGTATATATTCTTTGAAATCACTAT
11583899 TTTGTAATATATT-TTTGAAATTCACT
1 TTTGT-ATATATTCTTTGAAA-TCACT
11583925 TTACATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.28, C:0.09, G:0.08, T:0.55
Consensus pattern (27 bp):
TTTGTATATATTCTTTGAAATCACTAT
Found at i:11590224 original size:88 final size:88
Alignment explanation
Indices: 11590075--11591099 Score: 1394
Period size: 88 Copynumber: 11.6 Consensus size: 88
11590065 GAAATCACAA
* * * * *
11590075 AGCCTTGAC-TCCTTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCTTGCATCG
1 AGCCTTGCCTTCC-TGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCG
*
11590139 ACAGCGAAGCAGATCGAAGATACC
65 ACAGTGAAGCAGATCGAAGATACC
* * * * *
11590163 AGCCTTGCCTTCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAAATCTTACCTTCCTGCATCGA
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
*
11590228 CAGCGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCGAAGATACC
* * * * * *
11590251 AGCCTTGCC-TCCTTAGGTTGTAGTGGAGGAGGTTGAAGATAGTAGATTTTGCCTTCCTGCATCG
1 AGCCTTGCCTTCC-TGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCG
*
11590315 ACAGCGAAGCAGATCGAAGATACC
65 ACAGTGAAGCAGATCGAAGATACC
* * * * * * *
11590339 AGCCTTACCTCCCTGGGTTGTAGTAGAGCAGGTTGAATATAGCAAATCTTGCCTTCCTGCATCGA
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
* *
11590404 CAGCGAAGCAGATCAAAGATACC
66 CAGTGAAGCAGATCGAAGATACC
* **
11590427 AGCATTGCC-TCACTAAGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCG
1 AGCCTTGCCTTC-CTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCG
* *
11590491 ATAGTGAAGCAGATCAAAGATACC
65 ACAGTGAAGCAGATCGAAGATACC
** *
11590515 AGCCTTGCC-TCCTTGGGTCATAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTATACCG
1 AGCCTTGCCTTCC-TGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCG
11590579 ACAGTGAAGCAGATCGAAGATACC
65 ACAGTGAAGCAGATCGAAGATACC
* * *
11590603 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTGGCCTTCTTGTACCGA
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
*
11590668 CAGTGAAGCAGATTGAAGATACC
66 CAGTGAAGCAGATCGAAGATACC
* *
11590691 AGCCTTGCC-TCCTTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTTCCTTCCTGTATCG
1 AGCCTTGCCTTCC-TGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCG
* * *
11590755 ACAGCGAATCAGACCGAAGATACC
65 ACAGTGAAGCAGATCGAAGATACC
* *
11590779 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATATTGCCTTCCTGTACCGA
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
11590844 CAGTGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCGAAGATACC
* * *
11590867 AGACTTGCCTCCCTGGGTCGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
11590932 CAGTGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCGAAGATACC
* * * * *
11590955 AGCCTTGCCTCCCTGGGTTATAGTGGAGTAGGTTGAAGATAGTAGATCTTGCCTTCCTATACCGA
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
* *
11591020 CAGTGAAGCAGATCAAAAATACC
66 CAGTGAAGCAGATCGAAGATACC
* * * * * * *
11591043 AGCCTTGCCTTTCTGGGTTGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCC
1 AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCC
11591100 CATACTGGTG
Statistics
Matches: 845, Mismatches: 84, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
87 7 0.01
88 829 0.98
89 9 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (88 bp):
AGCCTTGCCTTCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
CAGTGAAGCAGATCGAAGATACC
Found at i:11591006 original size:44 final size:44
Alignment explanation
Indices: 11590078--11591008 Score: 363
Period size: 44 Copynumber: 21.2 Consensus size: 44
11590068 ATCACAAAGC
* * *
11590078 CTTGACTCCTTGGGTTG-TAGTGGAGCAGGTTGAAAATAGCAGAT
1 CTTGCCTCCCTGGG-TGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * ** * * * * * * *
11590122 CTTGCCTTCTTGCATCGACAGCGAAGCAGATCGAAGATACCAG-C
1 CTTGCCTCCCTGGGT-GATAGTGGAGCAGGTTGAAGATAGCAGAT
* * *
11590166 CTTGCCTTCCTAGGTTG-TAGTGGAGCAGGTTGAAGATAGCAAAT
1 CTTGCCTCCCT-GGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * ** * * * * * * *
11590210 CTTACCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAG-C
1 CTTGCCTCCCTGGGT-GATAGTGGAGCAGGTTGAAGATAGCAGAT
* * * *
11590254 CTTGCCTCCTTAGGTTG-TAGTGGAGGAGGTTGAAGATAGTAGAT
1 CTTGCCTCCCT-GGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * ** * * * * * * *
11590298 TTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAG-C
1 CTTGCCTCCCTGGGT-GATAGTGGAGCAGGTTGAAGATAGCAGAT
* * * *
11590342 CTTACCTCCCTGGGTTG-TAGTAGAGCAGGTTGAATATAGCAAAT
1 CTTGCCTCCCTGGG-TGATAGTGGAGCAGGTTGAAGATAGCAGAT
* ** * * * * ** *
11590386 CTTGCCTTCCTGCATCGACAGCGAAGCAGATCAAAGATACCAG--
1 CTTGCCTCCCTGGGT-GATAGTGGAGCAGGTTGAAGATAGCAGAT
* * *
11590429 CATTGCCTCACTAAGTTG-TAGTGGAGCAGGTTGAAGATAGCAGAT
1 C-TTGCCTCCCT-GGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
* *** * * ** * *
11590474 CTTGCCTTCCTGTACCGATAGTGAAGCAGATCAAAGATACCAG-C
1 CTTGCCTCCCTG-GGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
* *
11590518 CTTGCCTCCTTGGGTCATAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
* **** * * * * * *
11590562 CTTGCCTTCCTATACCGACAGTGAAGCAGATCGAAGATACCAG-C
1 CTTGCCTCCCT-GGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
11590606 CTTGCCTCCCTGGGTTG-TAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGG-TGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * * *** * * * * *
11590650 CTGGCCTTCTTGTACCGACAGTGAAGCAGATTGAAGATACCAG-C
1 CTTGCCTCCCTG-GGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
*
11590694 CTTGCCTCCTTGGGTTG-TAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGG-TGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * ** * * * * *** * *
11590738 CTTTCCTTCCTGTATCGACAGCGAATCAGACCGAAGATACCAG-C
1 CTTGCCTCCCTGGGT-GATAGTGGAGCAGGTTGAAGATAGCAGAT
11590782 CTTGCCTCCCTGGGTTG-TAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGG-TGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * *** * * * * *
11590826 ATTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGA-
1 CTTGCCTCCCTG-GGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
11590870 CTTGCCTCCCTGGGTCG-TAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGGT-GATAGTGGAGCAGGTTGAAGATAGCAGAT
* *** * * * * * *
11590914 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAG-C
1 CTTGCCTCCCTG-GGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
* * *
11590958 CTTGCCTCCCTGGGTTATAGTGGAGTAGGTTGAAGATAGTAGAT
1 CTTGCCTCCCTGGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
11591002 CTTGCCT
1 CTTGCCT
11591009 TCCTATACCG
Statistics
Matches: 606, Mismatches: 242, Indels: 78
0.65 0.26 0.08
Matches are distributed among these distances:
43 196 0.32
44 214 0.35
45 196 0.32
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTGATAGTGGAGCAGGTTGAAGATAGCAGAT
Found at i:11591121 original size:88 final size:88
Alignment explanation
Indices: 11590075--11591281 Score: 1023
Period size: 88 Copynumber: 13.7 Consensus size: 88
11590065 GAAATCACAA
* * * * * * * * ** *
11590075 AGCCTTGACTCCTTGGGTTGTAGTGGAGCAGGTTGAAAATAGCAGATCTTGCCTTCTTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
* *
11590140 CAGCGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * * * * ** *
11590163 AGCCTTGCCTTCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAAATCTTACCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
* *
11590228 CAGCGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * * * * ** *
11590251 AGCCTTGCCTCCTTAGGTTGTAGTGGAGGAGGTTGAAGATAGTAGATTTTGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
* *
11590316 CAGCGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * * ** *
11590339 AGCCTTACCTCCCTGGGTTGTAGT-AGAGCAGGTTGAATATAGCAAATCTTGCCTTCCTGCATCG
1 AGCCTTGCCTCCCTGGGTTGTAGTGA-AGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCG
*
11590403 ACAGCGAAGCAGATCAAAGATACC
65 ACAGTGAAGCAGATCAAAGATACC
* * ** * * * * *
11590427 AGCATTGCCTCACTAAGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
*
11590492 TAGTGAAGCAGATCAAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* ** * * * *
11590515 AGCCTTGCCTCCTTGGGTCATAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTATACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
*
11590580 CAGTGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * * *
11590603 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTGGCCTTCTTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
**
11590668 CAGTGAAGCAGATTGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * * * *
11590691 AGCCTTGCCTCCTTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTTCCTTCCTGTATCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
* * * *
11590756 CAGCGAATCAGACCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * *
11590779 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATATTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
*
11590844 CAGTGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * * * *
11590867 AGACTTGCCTCCCTGGGTCGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
*
11590932 CAGTGAAGCAGATCGAAGATACC
66 CAGTGAAGCAGATCAAAGATACC
* * * * *
11590955 AGCCTTGCCTCCCTGGGTTATAGTGGAGTAGGTTGAAGATAGTAGATCTTGCCTTCCTATACCGA
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
*
11591020 CAGTGAAGCAGATCAAAAATACC
66 CAGTGAAGCAGATCAAAGATACC
** * * * * *
11591043 AGCCTTGCCTTTCTGGGTTGTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGG
1 AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
** * * * * *
11591108 TGGCGAAGTAGATCGAAGAAAGC
66 CAGTGAAGCAGATCAAAGATACC
* * * * ** ** * * * * **
11591131 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTG
1 AG-CCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCG
* * *
11591196 GC-GTGAAGTAGATCAAAGATAGC
65 ACAGTGAAGCAGATCAAAGATACC
* * * * ** ** * *
11591219 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
1 AG-CCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATAC
11591282 TGGTGGCGAA
Statistics
Matches: 994, Mismatches: 122, Indels: 6
0.89 0.11 0.01
Matches are distributed among these distances:
88 943 0.95
89 51 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (88 bp):
AGCCTTGCCTCCCTGGGTTGTAGTGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTATACCGA
CAGTGAAGCAGATCAAAGATACC
Found at i:11591165 original size:132 final size:132
Alignment explanation
Indices: 11591022--11591275 Score: 332
Period size: 132 Copynumber: 1.9 Consensus size: 132
11591012 TATACCGACA
* * *
11591022 GTGAAGCAGATCAAAAATACCAG-CCTTGCCTTTC-TGGGTTGTCGTGAAGTAGATCGAAGATAG
1 GTGAAGCAGATCAAAAATACCAGACCTTGCC-TTCATGGATTGGCGTGAAGTAGATCAAAGATAG
* *
11591085 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
65 CAGATCTTGTCTTCACATACTGG-CGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
11591150 TGGC
129 TGGC
* * * * * *
11591154 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC
1 GTGAAGCAGATCAAAAATACCAGACCTTGCCTTCATGGATTGGCGTGAAGTAGATCAAAGATAGC
** * * *
11591219 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTC
66 AGATCTTGTCTTCACATACTGGCGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
11591276 CCATACTGGT
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
132 55 0.53
133 49 0.47
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GTGAAGCAGATCAAAAATACCAGACCTTGCCTTCATGGATTGGCGTGAAGTAGATCAAAGATAGC
AGATCTTGTCTTCACATACTGGCGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
GC
Found at i:11591176 original size:44 final size:44
Alignment explanation
Indices: 11591064--11591436 Score: 444
Period size: 44 Copynumber: 8.5 Consensus size: 44
11591054 TCTGGGTTGT
*** *
11591064 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
11591108 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
1 -CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
*
11591153 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
*
11591197 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
*** *
11591241 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * * *
11591285 TGGCGAAGTAGATCGAAGAAAGTAGATCTTGTTTTCATGTATTGG
1 -CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* *
11591330 C--GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * * *** *
11591372 CATGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
*
11591416 TGGTGAAGTAGATCGAAGATA
1 -CGTGAAGTAGATCGAAGATA
11591437 CAAGTCTTAT
Statistics
Matches: 281, Mismatches: 43, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
42 39 0.14
44 155 0.55
45 87 0.31
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
Found at i:11591260 original size:177 final size:176
Alignment explanation
Indices: 11591062--11591436 Score: 608
Period size: 177 Copynumber: 2.1 Consensus size: 176
11591052 TTTCTGGGTT
11591062 GTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
1 GTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
*
11591127 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGT
66 AAGCAGATCTTGTCTTCATGTATTGGC--GAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGT
* * * ** *
11591192 ATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTG
129 ATCGGCATGAAATAGATCAAAGATAGCAGATCTTGTCTTCACATACTG
11591240 G-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
1 GTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
* * *
11591304 AAGTAGATCTTGTTTTCATGTATTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
66 AAGCAGATCTTGTCTTCATGTATTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTAT
* *
11591369 CGGCATGAAATAGATCAAAGGTAGCAGATCTTGTCTTCCCATACTG
131 CGGCATGAAATAGATCAAAGATAGCAGATCTTGTCTTCACATACTG
*
11591415 GTGGTGAAGTAGATCGAAGATA
1 GTCGTGAAGTAGATCGAAGATA
11591437 CAAGTCTTAT
Statistics
Matches: 183, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
175 75 0.41
176 19 0.10
177 88 0.48
178 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (176 bp):
GTCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
AAGCAGATCTTGTCTTCATGTATTGGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTAT
CGGCATGAAATAGATCAAAGATAGCAGATCTTGTCTTCACATACTG
Found at i:11591383 original size:131 final size:130
Alignment explanation
Indices: 11591067--11591434 Score: 472
Period size: 131 Copynumber: 2.8 Consensus size: 130
11591057 GGGTTGTCGT
* * *
11591067 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGC-GAAGTAGATCGAAGAAAGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTT--CAT-GT-ATGGCTGAAGTAGATCGAAGATAGC
*** * * * *
11591131 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATT
62 AGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
11591195 GGCG
127 GGCG
*
11591199 TGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
1 -GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTA-TGGC-TGAAGTAGATCGAAGATAGCA
* * *
11591264 GATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTTTTCATGTATTG
63 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
11591329 GC-
128 GCG
* * * *
11591331 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCGGCATGAAATAGATCAAAGGTAGCAG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTAT-GGC-TGAAGTAGATCGAAGATAGCAG
11591396 ATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
64 ATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGA
11591435 TACAAGTCTT
Statistics
Matches: 209, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
130 6 0.03
131 98 0.47
132 36 0.17
133 69 0.33
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (130 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATGGCTGAAGTAGATCGAAGATAGCAGAT
CTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG
Found at i:11591853 original size:19 final size:19
Alignment explanation
Indices: 11591779--11591850 Score: 108
Period size: 19 Copynumber: 3.7 Consensus size: 19
11591769 AATCTTCAAG
11591779 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
11591798 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
*
11591817 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
11591838 GATATGCAATCTT
1 GATATGCAATCTT
11591851 GGAAGATATG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 31 0.65
21 17 0.35
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:11591879 original size:22 final size:21
Alignment explanation
Indices: 11591781--11591881 Score: 104
Period size: 19 Copynumber: 4.9 Consensus size: 21
11591771 TCTTCAAGGA
11591781 TATGCAATCTT-AGATATGA-
1 TATGCAATCTTGAGATATGAT
*
11591800 TATGCAAT-TTTAGATATGAT
1 TATGCAATCTTGAGATATGAT
11591820 ATATGCAATCTTG-GATATGA-
1 -TATGCAATCTTGAGATATGAT
11591840 TATGCAATCTTGGAAGATATGAT
1 TATGCAATCTT-G-AGATATGAT
* *
11591863 TTTGTAATCTTAGAGATAT
1 TATGCAATCTT-GAGATAT
11591882 AATTTGTAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.03
19 27 0.39
20 1 0.01
21 15 0.21
22 15 0.21
23 10 0.14
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.40
Consensus pattern (21 bp):
TATGCAATCTTGAGATATGAT
Found at i:11599130 original size:16 final size:16
Alignment explanation
Indices: 11599109--11599155 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
11599099 AGTGGGGGAT
11599109 TGTTAGTAGTTTATAA
1 TGTTAGTAGTTTATAA
* *
11599125 TGTTAGTAGGTAATAA
1 TGTTAGTAGTTTATAA
* *
11599141 TATT-TTAGTTTATAA
1 TGTTAGTAGTTTATAA
11599156 AAAATTCAAG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (16 bp):
TGTTAGTAGTTTATAA
Found at i:11601228 original size:17 final size:17
Alignment explanation
Indices: 11601202--11601254 Score: 79
Period size: 19 Copynumber: 3.0 Consensus size: 17
11601192 ATTAAAATAG
*
11601202 TTATATATATTTAAAAA
1 TTATAAATATTTAAAAA
11601219 TTATAAATATTTATTAAAA
1 TTATAAATATTTA--AAAA
11601238 TTATAAATATTTAAAAA
1 TTATAAATATTTAAAAA
11601255 ATAGAGAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 16 0.48
19 17 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTATAAATATTTAAAAA
Found at i:11602408 original size:23 final size:20
Alignment explanation
Indices: 11602377--11602426 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 20
11602367 TTGATATATA
11602377 TTTTAAATTTTTATAATATTAT
1 TTTTAAATTTTTA-AATATT-T
11602399 TATTTAAATTTTTAAATATTT
1 T-TTTAAATTTTTAAATATTT
11602420 TTTTAAA
1 TTTTAAA
11602427 ATTATTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.22
21 2 0.07
22 7 0.26
23 12 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAAATTTTTAAATATTT
Found at i:11602412 original size:31 final size:30
Alignment explanation
Indices: 11602354--11602447 Score: 82
Period size: 31 Copynumber: 3.0 Consensus size: 30
11602344 TTATTATTTG
* * *
11602354 TTTTATAATATTTTTGATATATATTTTAAAT
1 TTTTATAATATTATT-ATTTAAATTTTAAAT
11602385 TTTTATAATATTATTATTTAAATTTTTAAATAT
1 TTTTATAATATTATTATTTAAA-TTTT-AA-AT
* * *
11602418 TTTTTTAAAATTATT-TTTAAAAATTTAAAT
1 TTTTATAATATTATTATTT-AAATTTTAAAT
11602448 ATAATTTTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
30 7 0.13
31 20 0.38
32 8 0.15
33 18 0.34
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (30 bp):
TTTTATAATATTATTATTTAAATTTTAAAT
Found at i:11602431 original size:33 final size:32
Alignment explanation
Indices: 11602383--11602464 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 32
11602373 TATATTTTAA
* **
11602383 ATTTTTATAATATTATTATTTAAATTTTTAAAT
1 ATTTTTTTAATATTATT-TTTAAAAATTTAAAT
*
11602416 ATTTTTTTAAAATTATTTTTAAAAATTTAAAT
1 ATTTTTTTAATATTATTTTTAAAAATTTAAAT
*
11602448 ATAATTTTTAATATTAT
1 AT-TTTTTTAATATTAT
11602465 AAAAAATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 15 0.36
33 27 0.64
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (32 bp):
ATTTTTTTAATATTATTTTTAAAAATTTAAAT
Found at i:11602591 original size:15 final size:15
Alignment explanation
Indices: 11602551--11602593 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
11602541 TATTTTAAAA
* *
11602551 TTTTTAATTATTATT
1 TTTTAAATTATTATC
11602566 TTTTAAAATTATTATC
1 TTTT-AAATTATTATC
11602582 TTTTAAATTATT
1 TTTTAAATTATT
11602594 TTTAAAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTAAATTATTATC
Found at i:11604265 original size:27 final size:27
Alignment explanation
Indices: 11604235--11604298 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
11604225 TGGGAAGAAG
*
11604235 AAAGGTAATAGAGAA-AAAGAAAGAAAA
1 AAAGGAAATAGAGAAGAAAGAAA-AAAA
* *
11604262 AAAGGAAATTGGGAAGAAAGAAAAAAA
1 AAAGGAAATAGAGAAGAAAGAAAAAAA
11604289 AAA-GAAATAG
1 AAAGGAAATAG
11604299 TTTTTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.19
27 19 0.59
28 7 0.22
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (27 bp):
AAAGGAAATAGAGAAGAAAGAAAAAAA
Found at i:11604277 original size:46 final size:45
Alignment explanation
Indices: 11604161--11604284 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 45
11604151 TTTAGCAAAG
* * * * * * *
11604161 AAAAGAAGAGAAAAA-GACATTAGGAAGAAAAAAGGTCATCGGGA
1 AAAAGAAGAAAAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
*
11604205 AAAAGAA-AAGAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
1 AAAAGAAGAAAAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
11604249 AAAAGAAAGAAAAAAAGGAAATTGGGAAGAAAGAAA
1 AAAAG-AAGAAAAAAAGGAAATTGGGAAG-AAGAAA
11604285 AAAAAAAGAA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
43 5 0.07
44 35 0.52
45 2 0.03
46 19 0.28
47 6 0.09
ACGTcount: A:0.62, C:0.02, G:0.27, T:0.08
Consensus pattern (45 bp):
AAAAGAAGAAAAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
Found at i:11605409 original size:17 final size:17
Alignment explanation
Indices: 11605389--11605423 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
11605379 TTGTTTTTAT
*
11605389 TTTTTCATTAAACAATG
1 TTTTTAATTAAACAATG
*
11605406 TTTTTAATTTAACAATG
1 TTTTTAATTAAACAATG
11605423 T
1 T
11605424 AATTTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (17 bp):
TTTTTAATTAAACAATG
Found at i:11609552 original size:22 final size:21
Alignment explanation
Indices: 11609522--11609591 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 21
11609512 ATATGTATAC
11609522 ATACATATATAAAAATAAATA
1 ATACATATATAAAAATAAATA
*
11609543 TATACGTATAGATTAAAAA-AAATA
1 -ATAC--ATATA-TAAAAATAAATA
* *
11609567 ATTACATATAAAAAAATAAAAA
1 A-TACATATATAAAAATAAATA
11609589 ATA
1 ATA
11609592 ATTAAATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
21 7 0.18
22 13 0.33
23 1 0.03
24 12 0.31
25 6 0.15
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (21 bp):
ATACATATATAAAAATAAATA
Found at i:11609576 original size:24 final size:23
Alignment explanation
Indices: 11609523--11609616 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
11609513 TATGTATACA
11609523 TACATAT--ATAAAAATAAAT-AT
1 TACATATAAATAAAAA-AAATAAT
* *
11609544 ATACGTATAGATTAAAAAAAATAAT
1 -TACATATA-AATAAAAAAAATAAT
*
11609569 TACATATAAAAAAATAAAAAATAAT
1 TACATAT-AAATAA-AAAAAATAAT
* *
11609594 TAAATATAAAAAAAAAAAATAAT
1 TACATATAAATAAAAAAAATAAT
11609617 AATTATATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
22 6 0.10
23 10 0.17
24 19 0.32
25 25 0.42
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (23 bp):
TACATATAAATAAAAAAAATAAT
Found at i:11609593 original size:25 final size:25
Alignment explanation
Indices: 11609557--11609729 Score: 119
Period size: 25 Copynumber: 7.0 Consensus size: 25
11609547 CGTATAGATT
*
11609557 AAAAAAAATAATTACATATAAAAAA
1 AAAAAAAATAATTAAATATAAAAAA
*
11609582 ATAAAAAATAATTAAATATAAAAAA
1 AAAAAAAATAATTAAATATAAAAAA
*
11609607 AAAAAATAATAATTATAT-TAAAAAA
1 AAAAAA-AATAATTAAATATAAAAAA
**** * **
11609632 AAAATGCGT-ATGT-AATATAATAGT
1 AAAAAAAATAAT-TAAATATAAAAAA
11609656 AAAAAAAAT-ATATAAA-A-AAAAAA
1 AAAAAAAATAAT-TAAATATAAAAAA
** * *
11609679 AAAAAAAA-AAAAAAAAAAAAAAAA
1 AAAAAAAATAATTAAATATAAAAAA
11609703 AAAAAAAATAAAATTAAAT-TAAAAAA
1 AAAAAAAAT--AATTAAATATAAAAAA
11609729 A
1 A
11609730 TAATTAAATA
Statistics
Matches: 112, Mismatches: 26, Indels: 19
0.71 0.17 0.12
Matches are distributed among these distances:
22 3 0.03
23 17 0.15
24 29 0.26
25 41 0.37
26 17 0.15
27 5 0.04
ACGTcount: A:0.77, C:0.01, G:0.02, T:0.20
Consensus pattern (25 bp):
AAAAAAAATAATTAAATATAAAAAA
Found at i:11609636 original size:23 final size:24
Alignment explanation
Indices: 11609557--11609636 Score: 92
Period size: 23 Copynumber: 3.3 Consensus size: 24
11609547 CGTATAGATT
*
11609557 AAAAAA-AATAATTACATATAAAA
1 AAAAAATAATAATTATATATAAAA
* *
11609580 AAATAAAAAATAATTAAATATAAAAAA
1 AAA-AAATAATAATT--ATATATAAAA
11609607 AAAAAATAATAATTATAT-TAAAA
1 AAAAAATAATAATTATATATAAAA
11609630 AAAAAAT
1 AAAAAAT
11609637 GCGTATGTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
23 14 0.29
24 7 0.14
25 7 0.14
26 10 0.20
27 11 0.22
ACGTcount: A:0.75, C:0.01, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAAAATAATAATTATATATAAAA
Found at i:11609726 original size:17 final size:17
Alignment explanation
Indices: 11609704--11609738 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
11609694 AAAAAAAAAA
11609704 AAAAAAATAAAATTAAATT
1 AAAAAAAT--AATTAAATT
11609723 AAAAAAATAATTAAAT
1 AAAAAAATAATTAAAT
11609739 AATGAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAAAATAATTAAATT
Found at i:11609729 original size:1 final size:1
Alignment explanation
Indices: 11609669--11609715 Score: 85
Period size: 1 Copynumber: 47.0 Consensus size: 1
11609659 AAAAATATAT
*
11609669 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11609716 TTAAATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.98, C:0.00, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:11613138 original size:19 final size:19
Alignment explanation
Indices: 11613115--11613154 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
11613105 TCACCTTGGC
*
11613115 CTCTCCTTTTTCTTTTCTTTT
1 CTCT-CTTTTT-TTTGCTTTT
11613136 CTCTCTTTTTTTTGCTTTT
1 CTCTCTTTTTTTTGCTTTT
11613155 TTTGAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (19 bp):
CTCTCTTTTTTTTGCTTTT
Found at i:11627815 original size:25 final size:25
Alignment explanation
Indices: 11627798--11627879 Score: 119
Period size: 26 Copynumber: 3.1 Consensus size: 25
11627788 ATAGATTATA
11627798 AAAAAATAATTACATATAAAAAAAT
1 AAAAAATAATTACATATAAAAAAAT
*
11627823 AAAAAATAATTAAATATAAAAAAAAT
1 AAAAAATAATTACATAT-AAAAAAAT
11627849 AAAAAATAATTACATTATATTAAAAAAT
1 AAAAAATAATTACA-TATA--AAAAAAT
11627877 AAA
1 AAA
11627880 TATGCGTATG
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
25 16 0.31
26 22 0.43
27 3 0.06
28 10 0.20
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (25 bp):
AAAAAATAATTACATATAAAAAAAT
Found at i:11627824 original size:26 final size:26
Alignment explanation
Indices: 11627795--11627879 Score: 111
Period size: 25 Copynumber: 3.2 Consensus size: 26
11627785 CGTATAGATT
11627795 ATAAAAAAATAATTACATATAAAAAA
1 ATAAAAAAATAATTACATATAAAAAA
*
11627821 AT-AAAAAATAATTAAATATAAAAAA
1 ATAAAAAAATAATTACATATAAAAAA
11627846 A-ATAAAAAATAATTACATTATATTAAAAA
1 ATA-AAAAAATAATTACA-TATA--AAAAA
11627875 ATAAA
1 ATAAA
11627880 TATGCGTATG
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
25 23 0.45
26 15 0.29
27 4 0.08
29 8 0.16
30 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (26 bp):
ATAAAAAAATAATTACATATAAAAAA
Found at i:11627836 original size:19 final size:19
Alignment explanation
Indices: 11627795--11627850 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
11627785 CGTATAGATT
*
11627795 ATAAAAAAATAATTACATATAA
1 ATAAAAAAA-AAATA-AT-TAA
11627817 A-AAAATAAAAAATAATTAA
1 ATAAAA-AAAAAATAATTAA
*
11627836 ATATAAAAAAAATAA
1 ATAAAAAAAAAATAA
11627851 AAAATAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 13 0.43
20 5 0.17
21 8 0.27
22 4 0.13
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
ATAAAAAAAAAATAATTAA
Found at i:11627966 original size:24 final size:24
Alignment explanation
Indices: 11627934--11627980 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
11627924 CATAGATTTA
** *
11627934 AAAAAATAATTAAATATGAAAAAT
1 AAAAAATAAAAAAATATAAAAAAT
11627958 AAAAAATAAAAAAATATAAAAAA
1 AAAAAATAAAAAAATATAAAAAA
11627981 ATTACTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (24 bp):
AAAAAATAAAAAAATATAAAAAAT
Found at i:11630101 original size:44 final size:44
Alignment explanation
Indices: 11630052--11630215 Score: 180
Period size: 44 Copynumber: 3.9 Consensus size: 44
11630042 TAAGATTCAC
* * * *
11630052 AATCTTCAGCCTATTCCTCTGCTGTCTAGGGAGATAGGAATCAG-
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAAT-AGT
*
11630096 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATTGT
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATAGT
* *
11630140 AATTTTCAACTTATTCCACTGCTGACCAGGGAGATAGG----GT
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATAGT
* * *
11630180 --TCTTCAATCTATTCCACTCCTGACCAGGAAGATAGG
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG
11630216 GTCGGGGTCA
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
38 31 0.29
40 2 0.02
43 1 0.01
44 73 0.68
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATAGT
Found at i:11631616 original size:19 final size:19
Alignment explanation
Indices: 11631593--11631632 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
11631583 TCACCTTGGC
*
11631593 CTCTCCTTTTTCTTTTCTTTT
1 CTCT-CTTTTT-TTTGCTTTT
11631614 CTCTCTTTTTTTTGCTTTT
1 CTCTCTTTTTTTTGCTTTT
11631633 TTTGAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (19 bp):
CTCTCTTTTTTTTGCTTTT
Found at i:11638560 original size:24 final size:24
Alignment explanation
Indices: 11638533--11638593 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
11638523 AATATATACG
*
11638533 TATAGATTATAAAAAATAATTACA
1 TATAAATTATAAAAAATAATTACA
**
11638557 TATAAAAAATAAAAAATAATTACA
1 TATAAATTATAAAAAATAATTACA
*
11638581 T-TATATTA-AAAAA
1 TATAAATTATAAAAA
11638594 TAAATATGCG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 5 0.16
23 4 0.13
24 22 0.71
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (24 bp):
TATAAATTATAAAAAATAATTACA
Found at i:11638695 original size:16 final size:15
Alignment explanation
Indices: 11638648--11638695 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
11638638 TACATAGATT
*
11638648 TAAAAAAATAATTAAA
1 TAAAAAAATAA-AAAA
*
11638664 TATGAAAAATAAAAAA
1 TA-AAAAAATAAAAAA
11638680 TAAAAAATATAAAAAA
1 TAAAAAA-ATAAAAAA
11638696 ATTACTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
TAAAAAAATAAAAAA
Found at i:11638697 original size:24 final size:24
Alignment explanation
Indices: 11638650--11638695 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
11638640 CATAGATTTA
* *
11638650 AAAAAATAATTAAATATGAAAAAT
1 AAAAAATAATAAAATATAAAAAAT
11638674 AAAAAATAA-AAAATATAAAAAA
1 AAAAAATAATAAAATATAAAAAA
11638696 ATTACTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (24 bp):
AAAAAATAATAAAATATAAAAAAT
Found at i:11641797 original size:43 final size:43
Alignment explanation
Indices: 11641750--11641931 Score: 337
Period size: 43 Copynumber: 4.2 Consensus size: 43
11641740 CCAAAACAGA
*
11641750 GTCTTACACATAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
*
11641793 GTCTTATACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
*
11641836 ATCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
11641879 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
11641922 GTCTTACACG
1 GTCTTACACG
11641932 AAATCATATC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 134 1.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (43 bp):
GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
Found at i:11645242 original size:23 final size:23
Alignment explanation
Indices: 11645216--11645296 Score: 67
Period size: 24 Copynumber: 3.4 Consensus size: 23
11645206 CACAACTTAT
*
11645216 CGGGATGCTCCAAAGAGCTATAA
1 CGGGAAGCTCCAAAGAGCTATAA
* *
11645239 CGGGAAGCTCGC-AAGAACTACATA
1 CGGGAAGCTC-CAAAGAGCTATA-A
*
11645263 CGGGAAGCT-CATAAGAGATAATAA
1 CGGGAAGCTCCA-AAGAGCT-ATAA
*
11645287 CGGGATGCTC
1 CGGGAAGCTC
11645297 TTTCGAGCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
22 1 0.02
23 17 0.38
24 25 0.56
25 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.16
Consensus pattern (23 bp):
CGGGAAGCTCCAAAGAGCTATAA
Found at i:11653459 original size:22 final size:22
Alignment explanation
Indices: 11653417--11653460 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
11653407 ATATAAAATT
*
11653417 AATAAAATATTTTCTTTTATAA
1 AATAAAATATTTTCTTATATAA
*
11653439 AATAAATTATGTTT-TTATATAA
1 AATAAAATAT-TTTCTTATATAA
11653461 TAATTCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
AATAAAATATTTTCTTATATAA
Found at i:11654047 original size:19 final size:18
Alignment explanation
Indices: 11654001--11654047 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
11653991 ACTCTGATTC
11654001 AAATTAAAAATAGTTTAT
1 AAATTAAAAATAGTTTAT
*
11654019 AAATT-TAAATAGATTT-T
1 AAATTAAAAATAG-TTTAT
11654036 AACATTAAAAAT
1 AA-ATTAAAAAT
11654048 TCAGATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (18 bp):
AAATTAAAAATAGTTTAT
Found at i:11657937 original size:14 final size:14
Alignment explanation
Indices: 11657918--11657945 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
11657908 TTATTTTTTT
11657918 TCAACCAGTTTGAA
1 TCAACCAGTTTGAA
11657932 TCAACCAGTTTGAA
1 TCAACCAGTTTGAA
11657946 AAAGTATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
TCAACCAGTTTGAA
Found at i:11668755 original size:14 final size:14
Alignment explanation
Indices: 11668709--11668758 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
11668699 TTTCGAAAAA
11668709 TATTTAT-ATTAATT
1 TATTTATAATTAA-T
*
11668723 TAATTTAATATTTAA-
1 T-ATTT-ATAATTAAT
11668738 TATTTATAATTAAT
1 TATTTATAATTAAT
11668752 TATTTAT
1 TATTTAT
11668759 TTATTTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 7 0.23
14 12 0.40
15 5 0.17
16 2 0.07
17 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTTATAATTAAT
Found at i:11675450 original size:10 final size:10
Alignment explanation
Indices: 11675425--11675456 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
11675415 GATAGAGATT
11675425 AAAACTTCTAG
1 AAAACTTCT-G
11675436 AAAACTTCTG
1 AAAACTTCTG
11675446 AAAACTTCTG
1 AAAACTTCTG
11675456 A
1 A
11675457 TAAATACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (10 bp):
AAAACTTCTG
Found at i:11683909 original size:5 final size:5
Alignment explanation
Indices: 11683899--11683930 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
11683889 ATGTAGATTA
11683899 TTCCT TTCCT TTCCT TTCCT TTCCT TTCCT TT
1 TTCCT TTCCT TTCCT TTCCT TTCCT TTCCT TT
11683931 TATTTTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TTCCT
Found at i:11684720 original size:31 final size:30
Alignment explanation
Indices: 11684684--11684757 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 30
11684674 TTAACGGCTC
11684684 AGTGACTAAAATGTTACAACATGTT-AA-CATA
1 AGTGACTAAAATGTT--AACAT-TTCAAGCATA
*
11684715 AGTGACTAAAACG-TAACATTTCAAGCATA
1 AGTGACTAAAATGTTAACATTTCAAGCATA
*
11684744 AATGACTAAAATGT
1 AGTGACTAAAATGT
11684758 AACCTATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 2 0.05
28 7 0.19
29 15 0.41
30 1 0.03
31 12 0.32
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (30 bp):
AGTGACTAAAATGTTAACATTTCAAGCATA
Found at i:11697616 original size:22 final size:21
Alignment explanation
Indices: 11697562--11697619 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
11697552 AAATTTTAAT
11697562 TAATTTATTATAAAAATAAAAA
1 TAATTTA-TATAAAAATAAAAA
* *
11697584 T-ATTCT-CATAAAAATATAACA
1 TAATT-TATATAAAAATA-AAAA
11697605 TAATTTATATAAAAA
1 TAATTTATATAAAAA
11697620 ATTGAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
20 9 0.31
21 8 0.28
22 12 0.41
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (21 bp):
TAATTTATATAAAAATAAAAA
Found at i:11698213 original size:32 final size:33
Alignment explanation
Indices: 11698175--11698237 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
11698165 TTTCCAATGT
* *
11698175 TTAATTGAAGCCAAAAATAAAT-AAATAAAAAG
1 TTAATTGAAGCAAAAAAAAAATCAAATAAAAAG
11698207 TTAATTGAAGCAAAAAAAAAATCAAATAAAA
1 TTAATTGAAGCAAAAAAAAAATCAAATAAAA
11698238 GTCTTGATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 20 0.71
33 8 0.29
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.21
Consensus pattern (33 bp):
TTAATTGAAGCAAAAAAAAAATCAAATAAAAAG
Found at i:11701791 original size:19 final size:21
Alignment explanation
Indices: 11701747--11701792 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
11701737 TTTTTTAACA
*
11701747 TAATTTTTAATAATTTATATT
1 TAATTTTAAATAATTTATATT
*
11701768 T-ATTTTAAAT-ATTT-TGTT
1 TAATTTTAAATAATTTATATT
11701786 TAATTTT
1 TAATTTT
11701793 TAGAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 8 0.36
21 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TAATTTTAAATAATTTATATT
Found at i:11711764 original size:14 final size:13
Alignment explanation
Indices: 11711742--11711782 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
11711732 TTGGAAAAAA
11711742 TAATTATAATATT
1 TAATTATAATATT
*
11711755 TAATTTATAAT-TA
1 TAA-TTATAATATT
11711768 TAATTAT-ATATT
1 TAATTATAATATT
11711780 TAA
1 TAA
11711783 AAGTAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 2 0.08
12 8 0.33
13 7 0.29
14 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTATAATATT
Found at i:11711780 original size:20 final size:20
Alignment explanation
Indices: 11711741--11711781 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
11711731 TTTGGAAAAA
*
11711741 ATAATTATAATATTTAATTT
1 ATAATTATAATATATAATTT
11711761 ATAATTATAAT-TATATATTT
1 ATAATTATAATATATA-ATTT
11711781 A
1 A
11711782 AAAGTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATAATTATAATATATAATTT
Found at i:11711794 original size:24 final size:24
Alignment explanation
Indices: 11711741--11711840 Score: 109
Period size: 24 Copynumber: 4.2 Consensus size: 24
11711731 TTTGGAAAAA
**
11711741 ATAATTATAATATTTAATTTATAATT
1 ATAATTAT-ATATTTAA-AAATAATT
*
11711767 ATAATTATATATTTAAAAGTAATT
1 ATAATTATATATTTAAAAATAATT
* *
11711791 ATAATT-TA-A--TAAAAATTATG
1 ATAATTATATATTTAAAAATAATT
11711811 ATAATTATATATTTAAAAATAATT
1 ATAATTATATATTTAAAAATAATT
11711835 ATAATT
1 ATAATT
11711841 TATTATGATT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
20 14 0.23
21 2 0.03
22 2 0.03
23 2 0.03
24 26 0.42
25 8 0.13
26 8 0.13
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
ATAATTATATATTTAAAAATAATT
Found at i:11711807 original size:17 final size:18
Alignment explanation
Indices: 11711769--11711809 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
11711759 TTATAATTAT
*
11711769 AATTATATATTTAAAAGT
1 AATTATATATTTAAAAGA
11711787 AATTATA-ATTTAATAA-A
1 AATTATATATTTAA-AAGA
11711804 AATTAT
1 AATTAT
11711810 GATAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTATATATTTAAAAGA
Found at i:11711834 original size:27 final size:26
Alignment explanation
Indices: 11711786--11711857 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
11711776 TATTTAAAAG
11711786 TAATTATAATTTAATAAAAATTATGA
1 TAATTATAATTTAATAAAAATTATGA
*
11711812 TAATTATATATTTAA-AAATAATTATAA
1 TAATTATA-ATTTAATAAA-AATTATGA
* *
11711839 TTTATTATGATTTAATAAA
1 -TAATTATAATTTAATAAA
11711858 GTTTAATGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 11 0.28
27 19 0.49
28 9 0.23
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (26 bp):
TAATTATAATTTAATAAAAATTATGA
Found at i:11713128 original size:23 final size:23
Alignment explanation
Indices: 11713101--11713151 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
11713091 TAATTAGCAC
* *
11713101 AAATATTTTTTAA-AATTATAAAA
1 AAATATTATTTAACAAAT-TAAAA
11713124 AAATATTATTTAACAAATTAAAA
1 AAATATTATTTAACAAATTAAAA
11713147 AAATA
1 AAATA
11713152 ATAAAATCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATATTATTTAACAAATTAAAA
Found at i:11730615 original size:16 final size:16
Alignment explanation
Indices: 11730565--11730609 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
11730555 ATTAAATCTA
* *
11730565 AAATAAATAATAGAAAT
1 AAATAAA-AATAAAAAG
*
11730582 AAATAAAAGTAAAAAG
1 AAATAAAAATAAAAAG
11730598 AAATAAAAATAA
1 AAATAAAAATAA
11730610 GTAGAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.18
Consensus pattern (16 bp):
AAATAAAAATAAAAAG
Found at i:11731734 original size:18 final size:17
Alignment explanation
Indices: 11731713--11731748 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
11731703 AATAAACCCT
11731713 AAAATAAAAAAAAACTTA
1 AAAATAAAAAAAAA-TTA
*
11731731 AAAATATAAAAAAATTA
1 AAAATAAAAAAAAATTA
11731748 A
1 A
11731749 TAGAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAATAAAAAAAAATTA
Found at i:11732740 original size:25 final size:24
Alignment explanation
Indices: 11732662--11732763 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 24
11732652 CACAAATGAA
* *
11732662 CAGAGAGCACTAAAGTGCTAT-A-
1 CAGAGAGCACTGACGTGCTATAAT
* *
11732684 CAGAGAGCACAGA--TG-TATTAAA
1 CAGAGAGCACTGACGTGCTA-TAAT
11732706 CAGAGAGCACTGACGTGCTAGTAAT
1 CAGAGAGCACTGACGTGCTA-TAAT
11732731 CAGAGAGCACTGACGTGCTAATAAT
1 CAGAGAGCACTGACGTGCT-ATAAT
*
11732756 CACAGAGC
1 CAGAGAGC
11732764 GCGCTAAAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.03
20 3 0.04
21 1 0.01
22 23 0.34
24 2 0.03
25 35 0.52
26 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (24 bp):
CAGAGAGCACTGACGTGCTATAAT
Found at i:11733779 original size:23 final size:23
Alignment explanation
Indices: 11733750--11733796 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
11733740 AATAAGTACG
11733750 TACATATATTAATTACAAATGTA
1 TACATATATTAATTACAAATGTA
* *
11733773 TACATATATTTATTACACATGTA
1 TACATATATTAATTACAAATGTA
11733796 T
1 T
11733797 TTATAATCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (23 bp):
TACATATATTAATTACAAATGTA
Found at i:11739053 original size:24 final size:24
Alignment explanation
Indices: 11739026--11739074 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
11739016 ATATAATTAT
11739026 AATAAAAGTTTGATTAGGTTCATG
1 AATAAAAGTTTGATTAGGTTCATG
11739050 AATAAAAGTTTGATTAGGTTCATG
1 AATAAAAGTTTGATTAGGTTCATG
11739074 A
1 A
11739075 GCATTATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (24 bp):
AATAAAAGTTTGATTAGGTTCATG
Found at i:11755293 original size:16 final size:16
Alignment explanation
Indices: 11755272--11755304 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11755262 AGAAAATGAG
11755272 ATTAAAGTGTAAACAT
1 ATTAAAGTGTAAACAT
11755288 ATTAAAGTGTAAACAT
1 ATTAAAGTGTAAACAT
11755304 A
1 A
11755305 CAACAATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (16 bp):
ATTAAAGTGTAAACAT
Found at i:11757516 original size:18 final size:18
Alignment explanation
Indices: 11757489--11757581 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
11757479 TACGACCGTT
11757489 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
11757507 TACGGCACTATTCATGTA
1 TACGGTACTATTCACGTA
11757525 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* **
11757543 TATGACACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
11757561 TACAGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
11757579 TAC
1 TAC
11757582 AGTAGTTGAG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:11757536 original size:36 final size:36
Alignment explanation
Indices: 11757489--11757581 Score: 141
Period size: 36 Copynumber: 2.6 Consensus size: 36
11757479 TACGACCGTT
* *
11757489 TACGGTACTATTCACGTATACGGCACTATTCATGTA
1 TACGGTACTATTCACGTATACGACACTATTCACGTA
*
11757525 TACGGTACTATTCACGTATATGACACTATTCACGTA
1 TACGGTACTATTCACGTATACGACACTATTCACGTA
* *
11757561 TACAGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
11757582 AGTAGTTGAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGACACTATTCACGTA
Found at i:11762684 original size:11 final size:11
Alignment explanation
Indices: 11762664--11762693 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
11762654 TAAAAATAAA
11762664 AAAAAGTATTTT
1 AAAAA-TATTTT
11762676 AAAAATATTTT
1 AAAAATATTTT
11762687 AAAAATA
1 AAAAATA
11762694 AAAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:11763311 original size:16 final size:17
Alignment explanation
Indices: 11763290--11763328 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
11763280 ATCTTTATAT
11763290 ATTTTTTTATCCCTTCA
1 ATTTTTTTATCCCTTCA
**
11763307 ATTTTTTTATCTTTTCA
1 ATTTTTTTATCCCTTCA
11763324 ATTTT
1 ATTTT
11763329 CTTTCCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTTTATCCCTTCA
Found at i:11764446 original size:6 final size:6
Alignment explanation
Indices: 11764403--11764430 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
11764393 TATTCATCAT
11764403 TTTAAA TTTAAA TTTAAA TTTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA
11764431 TATCAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:11765839 original size:28 final size:28
Alignment explanation
Indices: 11765808--11765867 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
11765798 AAAAGCCGTT
* *
11765808 TTTTTTTA-AATTTATCGAAATGGGCCGA
1 TTTTTTGATAATTTACCGAAATGGGCC-A
* *
11765836 TTTTTTGATTATTTACCGGAATGGGCCA
1 TTTTTTGATAATTTACCGAAATGGGCCA
11765864 TTTT
1 TTTT
11765868 CCAGGAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (28 bp):
TTTTTTGATAATTTACCGAAATGGGCCA
Found at i:11766112 original size:22 final size:22
Alignment explanation
Indices: 11766081--11766131 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
11766071 CTCTCTAATC
11766081 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
* *
11766103 CTTTCAATTTCCTTCTAAAATT
1 CTCTCAATTTCCTTCCAAAATT
11766125 CTCTCAA
1 CTCTCAA
11766132 ACCCATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.43
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:11769913 original size:125 final size:125
Alignment explanation
Indices: 11769691--11770040 Score: 607
Period size: 123 Copynumber: 2.8 Consensus size: 125
11769681 CCCAAACTTG
*
11769691 CTACTGTAGCAAAATCGCGTCCACGAGGGTGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
11769756 TAAAAGCGATTTTTTACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
**
11769816 CTACTGTAGCAAAATCGCGTATACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
11769881 TAGAGGCAATTTTATACTATTTGCTCAGAAACGTC--AAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
11769939 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
11770004 TAGAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACGTCAA
11770041 CTCGAAATAA
Statistics
Matches: 211, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
123 117 0.55
124 1 0.00
125 93 0.44
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
Found at i:11770298 original size:30 final size:28
Alignment explanation
Indices: 11770236--11770301 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
11770226 GATTTCCCGG
*
11770236 AAAATGGCCCATTCCGGTAAATAATCAA
1 AAAATGGCCCATTCCGGTAAATAATAAA
* **
11770264 AAAATCGGCCCATTTCGGTAAATTTTGAAA
1 AAAAT-GGCCCATTCCGGTAAATAAT-AAA
11770294 AAAATGGC
1 AAAATGGC
11770302 TTTTTTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 5 0.16
29 20 0.62
30 7 0.22
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (28 bp):
AAAATGGCCCATTCCGGTAAATAATAAA
Found at i:11770761 original size:15 final size:15
Alignment explanation
Indices: 11770741--11770770 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11770731 TTTAAGACCC
11770741 ATTTTATATATGGGT
1 ATTTTATATATGGGT
11770756 ATTTTATATATGGGT
1 ATTTTATATATGGGT
11770771 CAGGCCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
ATTTTATATATGGGT
Found at i:11776600 original size:22 final size:22
Alignment explanation
Indices: 11776575--11776621 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
11776565 CCTTTACTGG
11776575 AAAGAAATTCATTAATATTGAA
1 AAAGAAATTCATTAATATTGAA
11776597 AAAGAAATTCATTAATATTGAA
1 AAAGAAATTCATTAATATTGAA
11776619 AAA
1 AAA
11776622 CGAATGATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (22 bp):
AAAGAAATTCATTAATATTGAA
Found at i:11778194 original size:18 final size:18
Alignment explanation
Indices: 11778171--11778293 Score: 174
Period size: 18 Copynumber: 6.8 Consensus size: 18
11778161 CGTTTACAGT
11778171 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
*
11778189 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
11778207 ACTATTCACGTATACGGC
1 ACTATTCACGTATACGGC
* *
11778225 ACTATTCACGTATATGGT
1 ACTATTCACGTATACGGC
* **
11778243 ACTATTCATGTATACAAC
1 ACTATTCACGTATACGGC
*
11778261 ACTATTCACGTATACGGT
1 ACTATTCACGTATACGGC
*
11778279 ACTGTTCACGTATAC
1 ACTATTCACGTATAC
11778294 AGTAGTTGGG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 91 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (18 bp):
ACTATTCACGTATACGGC
Found at i:11778216 original size:36 final size:36
Alignment explanation
Indices: 11778169--11778293 Score: 205
Period size: 36 Copynumber: 3.5 Consensus size: 36
11778159 ACCGTTTACA
11778169 GTACTATTCACGTATACGGCACTATTCACGTATACG
1 GTACTATTCACGTATACGGCACTATTCACGTATACG
*
11778205 GTACTATTCACGTATACGGCACTATTCACGTATATG
1 GTACTATTCACGTATACGGCACTATTCACGTATACG
* **
11778241 GTACTATTCATGTATACAACACTATTCACGTATACG
1 GTACTATTCACGTATACGGCACTATTCACGTATACG
*
11778277 GTACTGTTCACGTATAC
1 GTACTATTCACGTATAC
11778294 AGTAGTTGGG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 82 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (36 bp):
GTACTATTCACGTATACGGCACTATTCACGTATACG
Found at i:11780167 original size:37 final size:37
Alignment explanation
Indices: 11780106--11780251 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
11780096 TACGTATGAT
* *
11780106 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
11780141 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
11780178 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
11780215 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
11780252 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:11780268 original size:46 final size:46
Alignment explanation
Indices: 11780215--11780581 Score: 437
Period size: 46 Copynumber: 7.6 Consensus size: 46
11780205 TAAGTGTAGC
* **
11780215 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
11780261 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
11780307 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
11780359 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
11780405 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
11780457 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
11780503 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
11780555 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
11780582 AGTACTCAAA
Statistics
Matches: 281, Mismatches: 22, Indels: 36
0.83 0.06 0.11
Matches are distributed among these distances:
46 152 0.54
48 2 0.01
49 2 0.01
50 2 0.01
52 123 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:11780334 original size:52 final size:52
Alignment explanation
Indices: 11780258--11780575 Score: 399
Period size: 52 Copynumber: 6.3 Consensus size: 52
11780248 TAGCTAAAGC
* *
11780258 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
11780311 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
11780363 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
11780409 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
11780461 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
11780507 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
11780559 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
11780576 ATCAGAAGTA
Statistics
Matches: 228, Mismatches: 24, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
46 83 0.36
49 1 0.00
52 126 0.55
53 18 0.08
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:11780380 original size:98 final size:98
Alignment explanation
Indices: 11780226--11780581 Score: 640
Period size: 98 Copynumber: 3.6 Consensus size: 98
11780216 ACTTATCACT
* * *
11780226 TTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
* *
11780291 GTATAGCCGAAGCTATCACTTATCACTTTTCAC
66 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
** *
11780324 TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
11780389 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
66 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
11780422 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
11780487 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
66 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
11780520 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
11780582 AGTACTCAAA
Statistics
Matches: 249, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 249 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (98 bp):
TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATTACTTATCACTTTCCAC
Found at i:11786178 original size:15 final size:14
Alignment explanation
Indices: 11786141--11786183 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
11786131 AATATAATGT
11786141 AATAAAAT-AATAA
1 AATAAAATAAATAA
11786154 AATCAAAATACAATAA
1 AAT-AAAATA-AATAA
11786170 AATAAAATAGAATA
1 AATAAAATA-AATA
11786184 TTAGAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 3 0.12
14 5 0.19
15 10 0.38
16 8 0.31
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:11787022 original size:32 final size:32
Alignment explanation
Indices: 11786969--11787063 Score: 183
Period size: 32 Copynumber: 3.0 Consensus size: 32
11786959 AGGCAAATTA
11786969 CAAGAGTAATTG-AATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
11787000 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
11787032 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
11787064 AAAATTATCT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 12 0.19
32 51 0.81
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (32 bp):
CAAGAGTAATTGAAATCCTAATAAAACTCTTT
Found at i:11788443 original size:12 final size:12
Alignment explanation
Indices: 11788426--11788462 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
11788416 TTAAAATATT
11788426 AAAAATTAGAAA
1 AAAAATTAGAAA
11788438 AAAAATTAG-AA
1 AAAAATTAGAAA
*
11788449 AAAAATTATAAA
1 AAAAATTAGAAA
11788461 AA
1 AA
11788463 TAGTAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (12 bp):
AAAAATTAGAAA
Found at i:11788461 original size:20 final size:20
Alignment explanation
Indices: 11788438--11788491 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
11788428 AAATTAGAAA
11788438 AAAAATTAGAAAAAAATTAT
1 AAAAATTAGAAAAAAATTAT
11788458 AAAAA-TAGTAAAAAAATTAT
1 AAAAATTAG-AAAAAAATTAT
11788478 AAAATATATAGAAA
1 AAAA-AT-TAGAAA
11788492 TATAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 3 0.10
20 20 0.67
21 1 0.03
22 3 0.10
23 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (20 bp):
AAAAATTAGAAAAAAATTAT
Found at i:11788480 original size:11 final size:11
Alignment explanation
Indices: 11788426--11788509 Score: 58
Period size: 11 Copynumber: 8.2 Consensus size: 11
11788416 TTAAAATATT
*
11788426 AAAAATTAGAAA
1 AAAAATTA-TAA
*
11788438 AAAAATTAGAA
1 AAAAATTATAA
11788449 AAAAATTAT--
1 AAAAATTATAA
11788458 AAAAA-TAGTAA
1 AAAAATTA-TAA
11788469 AAAAATTAT--
1 AAAAATTATAA
*
11788478 -AAAA-TATAT
1 AAAAATTATAA
*
11788487 AGAAA-TATAA
1 AAAAATTATAA
11788497 AAAAATTATAA
1 AAAAATTATAA
11788508 AA
1 AA
11788510 TTTTATAAGT
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
7 3 0.05
8 6 0.10
9 6 0.10
10 11 0.19
11 23 0.39
12 10 0.17
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:11788525 original size:29 final size:28
Alignment explanation
Indices: 11788450--11788510 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
11788440 AAATTAGAAA
*
11788450 AAAAT-TATAAAAATAGTAAAAAAATTAT
1 AAAATATATAGAAATA-TAAAAAAATTAT
11788478 AAAATATATAGAAATATAAAAAAATTAT
1 AAAATATATAGAAATATAAAAAAATTAT
11788506 AAAAT
1 AAAAT
11788511 TTTATAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (28 bp):
AAAATATATAGAAATATAAAAAAATTAT
Found at i:11788755 original size:36 final size:36
Alignment explanation
Indices: 11788707--11788777 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
11788697 GGGTCGTTAA
* *
11788707 TTTTTTATGATTTTTATA-AAATTTTACATTTTTTAT
1 TTTTTTACGATTTTTATAGAAA-ATTACATTTTTTAT
*
11788743 TTTTTTACGATTTTTATAGAAAATTATATTTTTTA
1 TTTTTTACGATTTTTATAGAAAATTACATTTTTTA
11788778 ATAATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 28 0.90
37 3 0.10
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (36 bp):
TTTTTTACGATTTTTATAGAAAATTACATTTTTTAT
Found at i:11794789 original size:63 final size:64
Alignment explanation
Indices: 11794639--11794790 Score: 209
Period size: 64 Copynumber: 2.4 Consensus size: 64
11794629 GACACGAGCA
* *
11794639 TGTGTCCAGGCCGTGTAACTCATTGATTACAAGATAAAGATCACACGGGTTAAGGACAAGAGGG
1 TGTGTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGGTAAGGACAAGAGGG
* * * * *
11794703 TGTGTCCAGGCTGTGTAACTCACTGATTACAAGATAAGGATCATA-GGGGTAGGGATAA-AGGCG
1 TGTGTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGGTAAGGACAAGAGG-G
*
11794766 TGTGTCCAGGCCGTGTGACTCACTG
1 TGTGTCCAGGCCGTGTAACTCACTG
11794791 TTGCTATTAG
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
62 3 0.04
63 34 0.44
64 41 0.53
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (64 bp):
TGTGTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGGTAAGGACAAGAGGG
Found at i:11797116 original size:29 final size:30
Alignment explanation
Indices: 11797057--11797114 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
11797047 TCCGAGCCTT
*
11797057 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
11797087 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
11797115 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:11797234 original size:85 final size:85
Alignment explanation
Indices: 11797091--11797263 Score: 346
Period size: 85 Copynumber: 2.0 Consensus size: 85
11797081 AGTTTAGGGG
11797091 CAAAATTGTAATTTTGAAAAAGTTAGAGTCGAGGGCTGTTTTGATGAATGTGATTATTAAATAAG
1 CAAAATTGTAATTTTGAAAAAGTTAGAGTCGAGGGCTGTTTTGATGAATGTGATTATTAAATAAG
11797156 TTAAATTTACTATTTTAGAT
66 TTAAATTTACTATTTTAGAT
11797176 CAAAATTGTAATTTTGAAAAAGTTAGAGTCGAGGGCTGTTTTGATGAATGTGATTATTAAATAAG
1 CAAAATTGTAATTTTGAAAAAGTTAGAGTCGAGGGCTGTTTTGATGAATGTGATTATTAAATAAG
11797241 TTAAATTTACTATTTTAGAT
66 TTAAATTTACTATTTTAGAT
11797261 CAA
1 CAA
11797264 GAAGTACGAA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.39
Consensus pattern (85 bp):
CAAAATTGTAATTTTGAAAAAGTTAGAGTCGAGGGCTGTTTTGATGAATGTGATTATTAAATAAG
TTAAATTTACTATTTTAGAT
Found at i:11797429 original size:13 final size:13
Alignment explanation
Indices: 11797411--11797442 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
11797401 TTTCCAGCAA
11797411 TTATGAATTTATT
1 TTATGAATTTATT
11797424 TTATGAATTTATT
1 TTATGAATTTATT
*
11797437 TGATGA
1 TTATGA
11797443 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:11797650 original size:50 final size:50
Alignment explanation
Indices: 11797537--11797778 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
11797527 ATTTGGGTAA
* * *
11797537 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
11797593 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
11797643 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
11797693 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
11797743 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
11797779 TTTCGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Done.