Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 42 of 228
Found at i:12765766 original size:14 final size:14
Alignment explanation
Indices: 12765738--12765775 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
12765728 ATTTGTTTCA
*
12765738 CTGAAAAA-GACTT
1 CTGAAAAATGATTT
*
12765751 CTGGAAAATGATTT
1 CTGAAAAATGATTT
12765765 CTGAAAAATGA
1 CTGAAAAATGA
12765776 CTTACTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (14 bp):
CTGAAAAATGATTT
Found at i:12770788 original size:14 final size:13
Alignment explanation
Indices: 12770762--12770796 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
12770752 AAAATAAAAA
12770762 AAAATATAAATAT
1 AAAATATAAATAT
*
12770775 AAATATATACATAT
1 AAA-ATATAAATAT
12770789 AAAATATA
1 AAAATATA
12770797 TTCATGCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATATAAATAT
Found at i:12771059 original size:30 final size:32
Alignment explanation
Indices: 12771025--12771087 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
12771015 AAATAATAAT
*
12771025 AAAATAAGT-ATATA-ATATGTATATATATTA
1 AAAATAAGTAAAATATATATGTATATATATTA
***
12771055 AAAATGTTTAAAATATATATGTATATATATTA
1 AAAATAAGTAAAATATATATGTATATATATTA
12771087 A
1 A
12771088 CATGCATATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.22
31 4 0.15
32 17 0.63
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.41
Consensus pattern (32 bp):
AAAATAAGTAAAATATATATGTATATATATTA
Found at i:12771134 original size:15 final size:15
Alignment explanation
Indices: 12771114--12771151 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
12771104 TATATATAGG
12771114 TATAATAATATAT-AA
1 TATAATAATA-ATGAA
12771129 TATAATAATAATGAA
1 TATAATAATAATGAA
*
12771144 AATAATAA
1 TATAATAA
12771152 AATAAACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
TATAATAATAATGAA
Found at i:12772969 original size:16 final size:16
Alignment explanation
Indices: 12772948--12772980 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
12772938 GTCCCTCTTA
12772948 AATAATATTATA-TAAG
1 AATAAT-TTATATTAAG
12772964 AATAATTTATATTAAG
1 AATAATTTATATTAAG
12772980 A
1 A
12772981 TTGTTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
AATAATTTATATTAAG
Found at i:12775624 original size:21 final size:21
Alignment explanation
Indices: 12775598--12775637 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
12775588 TGTACTATTT
12775598 TTTGAACTAGAGCCAATTCTA
1 TTTGAACTAGAGCCAATTCTA
12775619 TTTGAACTAGAGCCAATTC
1 TTTGAACTAGAGCCAATTC
12775638 CAACTGAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (21 bp):
TTTGAACTAGAGCCAATTCTA
Found at i:12775645 original size:21 final size:21
Alignment explanation
Indices: 12775600--12775646 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
12775590 TACTATTTTT
* **
12775600 TGAACTAGAGCCAATTCTATT
1 TGAACTAGAGCCAATTCCAAC
12775621 TGAACTAGAGCCAATTCCAAC
1 TGAACTAGAGCCAATTCCAAC
12775642 TGAAC
1 TGAAC
12775647 CAGAATATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (21 bp):
TGAACTAGAGCCAATTCCAAC
Found at i:12778505 original size:18 final size:18
Alignment explanation
Indices: 12778482--12778521 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
12778472 TATAATTTAA
*
12778482 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
12778500 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
12778518 AAAA
1 AAAA
12778522 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:12787189 original size:23 final size:23
Alignment explanation
Indices: 12787163--12787208 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
12787153 AAAAAATTTA
*
12787163 AGATGCCTGATTTGTGTTTATTG
1 AGATGCCTGATTTGGGTTTATTG
**
12787186 AGATGTTTGATTTGGGTTTATTG
1 AGATGCCTGATTTGGGTTTATTG
12787209 CATTACGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (23 bp):
AGATGCCTGATTTGGGTTTATTG
Found at i:12787962 original size:12 final size:12
Alignment explanation
Indices: 12787945--12787969 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12787935 ATATTAGAAC
12787945 AATAAAGAAGAT
1 AATAAAGAAGAT
12787957 AATAAAGAAGAT
1 AATAAAGAAGAT
12787969 A
1 A
12787970 GATGAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AATAAAGAAGAT
Found at i:12788333 original size:20 final size:20
Alignment explanation
Indices: 12788290--12788333 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
12788280 GTTTTAAACT
12788290 AAAC-TTTTTTATTAACATA
1 AAACTTTTTTTATTAACATA
* *
12788309 TAACTTTTTTTATTAACTTA
1 AAACTTTTTTTATTAACATA
12788329 AAACT
1 AAACT
12788334 CCTAAATAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (20 bp):
AAACTTTTTTTATTAACATA
Found at i:12788769 original size:16 final size:16
Alignment explanation
Indices: 12788744--12788784 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
12788734 AAAGTCCAAA
12788744 AAAAATATATATTTAAT
1 AAAAA-ATATATTTAAT
*
12788761 AAAAAATATATTTGAT
1 AAAAAATATATTTAAT
*
12788777 TAAAAATA
1 AAAAAATA
12788785 AAAATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
AAAAAATATATTTAAT
Found at i:12788782 original size:18 final size:19
Alignment explanation
Indices: 12788742--12788782 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
12788732 TAAAAGTCCA
*
12788742 AAAAAAATATATATTTAAT
1 AAAAAAATATATATTGAAT
*
12788761 -AAAAAATATAT-TTGATT
1 AAAAAAATATATATTGAAT
12788778 AAAAA
1 AAAAA
12788783 TAAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAAAAATATATATTGAAT
Found at i:12788788 original size:6 final size:6
Alignment explanation
Indices: 12788777--12788814 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
12788767 TATATTTGAT
12788777 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA
12788815 GTTAATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:12788788 original size:42 final size:37
Alignment explanation
Indices: 12788686--12788788 Score: 93
Period size: 42 Copynumber: 2.6 Consensus size: 37
12788676 GGCCCGACCC
12788686 ATATTTGATTAAAAAT--AAAAATATATATTTAATAT
1 ATATTTGATTAAAAATAAAAAAATATATATTTAATAT
*
12788721 ATAGTTTGGATTAAAAGTCCAAAAAAAATATATATTTAATAAAAAAT
1 ATA-TTT-GATTAAAAAT---AAAAAAATATATATTTAAT-----AT
12788768 ATATTTGATTAAAAATAAAAA
1 ATATTTGATTAAAAATAAAAA
12788789 TAAAAATAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
35 3 0.06
36 3 0.06
37 9 0.17
42 22 0.41
45 9 0.17
46 3 0.06
47 5 0.09
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (37 bp):
ATATTTGATTAAAAATAAAAAAATATATATTTAATAT
Found at i:12795398 original size:55 final size:55
Alignment explanation
Indices: 12795323--12795446 Score: 176
Period size: 55 Copynumber: 2.3 Consensus size: 55
12795313 ACGACCTGGC
* * * *
12795323 ACACAGACGTGTGGTTTGGCCATGTGACCCAAGTCAGTGAGTTACATGGGCTAGA
1 ACACGGACGTGTGGTATGGCCATGTGACCCAAGTCAGTGAGTTACACGGGCAAGA
* *
12795378 ACACGGACGTGTGGTATGGCCGTGTGACCCAAGTCAGTGAGTTACACGGGCAAGG
1 ACACGGACGTGTGGTATGGCCATGTGACCCAAGTCAGTGAGTTACACGGGCAAGA
* *
12795433 ATACGGGCGTGTGG
1 ACACGGACGTGTGG
12795447 CTCCATTTCG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.21
Consensus pattern (55 bp):
ACACGGACGTGTGGTATGGCCATGTGACCCAAGTCAGTGAGTTACACGGGCAAGA
Found at i:12796428 original size:12 final size:13
Alignment explanation
Indices: 12796411--12796439 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
12796401 AACAAGGTTC
12796411 AAAATAAAAA-TA
1 AAAATAAAAATTA
12796423 AAAATAAAAATTA
1 AAAATAAAAATTA
12796436 AAAA
1 AAAA
12796440 GTATTACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAAAATTA
Found at i:12798190 original size:57 final size:57
Alignment explanation
Indices: 12798107--12798222 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
12798097 GTTAAAGATA
**
12798107 TTGAGTGTTGCCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
1 TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
12798164 TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
1 TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
12798221 TT
1 TT
12798223 ATTAGTTATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (57 bp):
TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
Found at i:12798979 original size:26 final size:25
Alignment explanation
Indices: 12798941--12799010 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 25
12798931 CATGCCAAAC
12798941 CACAGTTCGTGTGAGCAAGCCTATTT
1 CACAGTTCGTGTGAGCAAGCC-ATTT
* * *
12798967 CAGAGTTCATGTGAGCAGATCCATTT
1 CACAGTTCGTGTGAGCA-AGCCATTT
*
12798993 CACAGCTCGTGTGAGCAA
1 CACAGTTCGTGTGAGCAA
12799011 TGATGTAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.03
26 33 0.89
27 3 0.08
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
CACAGTTCGTGTGAGCAAGCCATTT
Found at i:12811337 original size:29 final size:29
Alignment explanation
Indices: 12811303--12811360 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
12811293 TAATGCTTAT
12811303 TAGATTAACTACATCTATTAAAAATTAAC
1 TAGATTAACTACATCTATTAAAAATTAAC
*
12811332 TAGATTAATTACATCTATTAAAAATTAAC
1 TAGATTAACTACATCTATTAAAAATTAAC
12811361 ACAACTTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (29 bp):
TAGATTAACTACATCTATTAAAAATTAAC
Found at i:12816246 original size:564 final size:564
Alignment explanation
Indices: 12815170--12816303 Score: 1869
Period size: 564 Copynumber: 2.0 Consensus size: 564
12815160 GGCTAGAAAA
*
12815170 CTTAGGCAACTCAGGCTAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAGG
1 CTTAGGCAACTCAGGCTAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAAG
* ** *
12815235 GGCCATCCTTCCCCATTGATCAGGGAGTATTGCTGCAACAATTGTTTAGTTTGCAGGAGCAACTA
66 GGCCATCCTTCCCCATTGATCAGGGAGTATCGCCACAACAATTGTTTAGTTTGCAGGAACAACTA
* *
12815300 AGTTTAATGAAAGAACAGATGACTCAACGAAGTTTTAGGTTTGAACAACATCAATTGTTTCACTA
131 AGTTTAATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACTA
*
12815365 GGAGCTGTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCGACCATTTGATCTTCAAGG
196 GGA-C-GTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCCACCATTTGATCTTCAAGG
* ***
12815430 AAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGGCACATGCAAAGCCATGGTAGAATGAGATGG
259 AAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGG
* *
12815495 ATGCTTTGCTTAGATATGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTAT
324 ATGCTTTGCGTAGATAAGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTAT
* * *
12815560 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACTATCCGAGTTCAAAGTGTCGAA
389 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGTCTCGAA
*
12815625 AGAAATGTTCGAATGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAATG
454 AGAAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAATG
* * *
12815690 TGTTAAGGGCCTTAAATGTGGCAGAGTGTAGGCTTTTTTAATAATT
519 TGTTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATAATT
* *
12815736 CTTAGTCAACTCAGG-TCAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTTAA
1 CTTAGGCAACTCAGGCT-AATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAA
* ** * * *
12815800 GGGCTATCCTTCCCTTTTGATCAGTGAGTATCGCCACAACAATTGTTTGGTTTGTAGGAACAACT
65 GGGCCATCCTTCCCCATTGATCAGGGAGTATCGCCACAACAATTGTTTAGTTTGCAGGAACAACT
*
12815865 AAGTTTGATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACT
130 AAGTTTAATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACT
* *
12815930 AGGA-GTTGGTACAAAACGAAGAATTAAGAAGAAAGATATAGTTCCACCATTCTGATCTTCAAGG
195 AGGACGTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCCACCATT-TGATCTTCAAGG
*
12815994 CAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGG
259 AAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGG
* * *
12816059 ATGCTTTGCGTAGATAAGTTCAAGGATTACACCCTGATGTGCAAGATATGGATTGATTGTTTTAT
324 ATGCTTTGCGTAGATAAGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTAT
12816124 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGTACT-GA
389 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGT-CTCGA
12816188 AAGAAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAAT
453 AAGAAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAAT
*
12816253 GTGTTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATGATT
518 GTGTTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATAATT
12816300 CTTA
1 CTTA
12816304 AGGGAAGTGT
Statistics
Matches: 528, Mismatches: 37, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
563 44 0.08
564 302 0.57
565 2 0.00
566 180 0.34
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (564 bp):
CTTAGGCAACTCAGGCTAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAAG
GGCCATCCTTCCCCATTGATCAGGGAGTATCGCCACAACAATTGTTTAGTTTGCAGGAACAACTA
AGTTTAATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACTA
GGACGTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCCACCATTTGATCTTCAAGGAA
ATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGGAT
GCTTTGCGTAGATAAGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTATTC
TAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGTCTCGAAAG
AAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAATGTG
TTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATAATT
Found at i:12826197 original size:46 final size:46
Alignment explanation
Indices: 12826104--12826197 Score: 109
Period size: 46 Copynumber: 2.0 Consensus size: 46
12826094 AGTACATGTA
* * * * *
12826104 TAGGTTCCGAGCTCCAGCAATTGTTGTAGACTTGAGAAAATAGGTT
1 TAGGTTCCAAGCTCCAGCAATTGTTGCAGACTCGAGAAAACAAGTT
* *
12826150 TAGGTTCCAAGCTCCAGC-ATGTGTTGCGGACTCGAGAATACAAGTT
1 TAGGTTCCAAGCTCCAGCAAT-TGTTGCAGACTCGAGAAAACAAGTT
12826196 TA
1 TA
12826198 TTAAGCCTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
45 2 0.05
46 38 0.95
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (46 bp):
TAGGTTCCAAGCTCCAGCAATTGTTGCAGACTCGAGAAAACAAGTT
Found at i:12827660 original size:21 final size:21
Alignment explanation
Indices: 12827636--12827747 Score: 68
Period size: 21 Copynumber: 5.3 Consensus size: 21
12827626 ATGCTTTACT
12827636 TTCTGTTAAGCTCTTTTGAGC
1 TTCTGTTAAGCTCTTTTGAGC
* *
12827657 TTCTGTTTAA-CTCATATGAG-
1 TTCTG-TTAAGCTCTTTTGAGC
* * *
12827677 TTTTCGTTCAGCTCATTTGAGC
1 TTCT-GTTAAGCTCTTTTGAGC
* * * * *
12827699 TTTTGTTTAA-CCCTTATGGGT
1 TTCTG-TTAAGCTCTTTTGAGC
* *
12827720 TTCCGTTCAGCTCTTTTGAGC
1 TTCTGTTAAGCTCTTTTGAGC
12827741 TTCTGTT
1 TTCTGTT
12827748 TAACCCTTAT
Statistics
Matches: 66, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
20 9 0.14
21 46 0.70
22 11 0.17
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.48
Consensus pattern (21 bp):
TTCTGTTAAGCTCTTTTGAGC
Found at i:12827690 original size:42 final size:42
Alignment explanation
Indices: 12827635--12827873 Score: 282
Period size: 42 Copynumber: 5.7 Consensus size: 42
12827625 CATGCTTTAC
* * * *
12827635 TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACTCATATGAGT
1 TTTC-GTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* *
12827678 TTTCGTTCAGCTCATTTGAGCTTTTGTTTAACCCTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
*
12827720 TTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* *
12827762 TTTCGTTCAGCTCTTTTTAGCTTCTGTTTCACCCTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* *** * *
12827804 TTCCGTTCAGCTCTTACAAGCTTCTGTTCAACCTTTATGGG-
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* * **
12827845 TTTCTATTTAGCTCTCATGAGCTTCTGTT
1 TTTC-GTTCAGCTCTTTTGAGCTTCTGTT
12827874 CAGCTTTCGA
Statistics
Matches: 170, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
41 3 0.02
42 163 0.96
43 4 0.02
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (42 bp):
TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
Found at i:12827819 original size:21 final size:21
Alignment explanation
Indices: 12827711--12827819 Score: 76
Period size: 21 Copynumber: 5.2 Consensus size: 21
12827701 TTGTTTAACC
12827711 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCT
* * * * * * *
12827732 CTTTTGAGCTTCTGTTTAACC
1 CTTATGGGTTTCCGTTCAGCT
*
12827753 CTTATGGGTTTTCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCT
* ** * * *
12827774 CTTTTTAGCTTCTGTTTCA-CC
1 CTTATGGGTTTCCG-TTCAGCT
12827795 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCT
12827816 CTTA
1 CTTA
12827820 CAAGCTTCTG
Statistics
Matches: 58, Mismatches: 28, Indels: 4
0.64 0.31 0.04
Matches are distributed among these distances:
20 4 0.07
21 50 0.86
22 4 0.07
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.47
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAGCT
Found at i:12833951 original size:30 final size:29
Alignment explanation
Indices: 12833917--12834005 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
12833907 AGAATCAGTC
* * *
12833917 TGGGCCTGAGCCCTATACAATAGCAGTGTG
1 TGGGCCT-AGCCCAATACAGTAACAGTGTG
** *
12833947 TGGGCCATAG-CCAATACAGTATTAGAGTG
1 TGGGCC-TAGCCCAATACAGTAACAGTGTG
12833976 TGGGCCTTAGCCCAATACAGTAACAGTGTG
1 TGGGCC-TAGCCCAATACAGTAACAGTGTG
12834006 GGCTTTATCC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
29 23 0.48
30 24 0.50
31 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (29 bp):
TGGGCCTAGCCCAATACAGTAACAGTGTG
Found at i:12834017 original size:28 final size:29
Alignment explanation
Indices: 12833944--12834018 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
12833934 CAATAGCAGT
* *
12833944 GTGTGGGCCATAG-CCAATACAGTATTAGA
1 GTGTGGGCCTTAGCCCAATACAGTA-TACA
12833973 GTGTGGGCCTTAGCCCAATACAGTA-ACA
1 GTGTGGGCCTTAGCCCAATACAGTATACA
* *
12834001 GTGTGGGCTTTATCCCAA
1 GTGTGGGCCTTAGCCCAA
12834019 AATAGTAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
28 18 0.44
29 12 0.29
30 11 0.27
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (29 bp):
GTGTGGGCCTTAGCCCAATACAGTATACA
Found at i:12834025 original size:28 final size:29
Alignment explanation
Indices: 12833944--12834031 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 29
12833934 CAATAGCAGT
* * * *
12833944 GTGTGGGCCATAG-CCAATACAGTATTAGA
1 GTGTGGGCCTTAGCCCAAAACAGTAAT-CA
*
12833973 GTGTGGGCCTTAGCCCAATACAGTAA-CA
1 GTGTGGGCCTTAGCCCAAAACAGTAATCA
* * *
12834001 GTGTGGGCTTTATCCCAAAATAGTAATCA
1 GTGTGGGCCTTAGCCCAAAACAGTAATCA
12834030 GT
1 GT
12834032 ACAAATGCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.46
29 16 0.32
30 11 0.22
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (29 bp):
GTGTGGGCCTTAGCCCAAAACAGTAATCA
Found at i:12834178 original size:26 final size:26
Alignment explanation
Indices: 12834138--12834188 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
12834128 ACACCAATAT
* * *
12834138 CGCAGCAAAGGTGCCAGTATCAGTAA
1 CGCAGCAAAGCTGCCAATAACAGTAA
12834164 CGCAGCAAAGCTGCCAATAACAGTA
1 CGCAGCAAAGCTGCCAATAACAGTA
12834189 TTACAGCAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.25, G:0.24, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAATAACAGTAA
Found at i:12834484 original size:27 final size:27
Alignment explanation
Indices: 12834451--12834852 Score: 468
Period size: 27 Copynumber: 14.8 Consensus size: 27
12834441 ATCTTTTGCG
*
12834451 GGGTATTTCGATAATTTTACCATTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * *
12834478 GGGTATTTTGATAATTTT-CTCCTTTGG
1 GGGTATTTCGATAATTTTAC-CCTTCGA
* * **
12834505 GGGTATTTCAATAATTTTACCTTTAAA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
12834532 GGGTATTTTGGTAATTTTACCCTAT-GA
1 GGGTATTTCGATAATTTTACCCT-TCGA
* *
12834559 AGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
*
12834586 GGGTATTTCGATAATTTTACCTTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * * * *
12834613 AGGTATTTTGGTAATTTTACCCATCAA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
12834640 GGGTATTTCGGTAAATTTTACCTTTCGA
1 GGGTATTTCGAT-AATTTTACCCTTCGA
*
12834668 GGGTATTTCGGTAAATTTTACCCTTCGA
1 GGGTATTTCGAT-AATTTTACCCTTCGA
12834696 GGGTATTTCGATAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
12834723 GGGTATTTTGGTAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * *
12834750 CGGTATTCCGATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
12834777 GGGTATTTTGGTAATTTTACCCATT-GA
1 GGGTATTTCGATAATTTTACCC-TTCGA
* *
12834804 GGGTATTTCGATAATTTTATCTTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
12834831 GGGTATTTCGATAATTTTACCC
1 GGGTATTTCGATAATTTTACCC
12834853 ATGAATAACA
Statistics
Matches: 317, Mismatches: 51, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.01
27 260 0.82
28 53 0.17
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCTTCGA
Found at i:12835522 original size:13 final size:13
Alignment explanation
Indices: 12835504--12835528 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12835494 CACAAAAATG
12835504 GAGATGAGAAGAA
1 GAGATGAGAAGAA
12835517 GAGATGAGAAGA
1 GAGATGAGAAGA
12835529 GAATATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.40, T:0.08
Consensus pattern (13 bp):
GAGATGAGAAGAA
Found at i:12840495 original size:28 final size:28
Alignment explanation
Indices: 12840439--12840506 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
12840429 TGACTTTCGA
*
12840439 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATGATAAAG
* * * *
12840467 CACTAAGTGTGTGAGTTTGATTATTAAG
1 CACTAAGTGTGCGAGTTTAATGATAAAG
*
12840495 CACTAAATGTGC
1 CACTAAGTGTGC
12840507 AAACTTATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATGATAAAG
Found at i:12848698 original size:6 final size:6
Alignment explanation
Indices: 12848687--12848720 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
12848677 AGCCAAAGGT
12848687 TTTTAA TTTTAA TTTTAA TTTTGCAA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTT--AA TTTTAA TT
12848721 GTCTTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.77
8 6 0.23
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:12848781 original size:17 final size:19
Alignment explanation
Indices: 12848761--12848795 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
12848751 TCCCCAAGTA
12848761 CTAATT-AGTTT-ATTTTC
1 CTAATTCAGTTTAATTTTC
12848778 CTAATTCAGTTTAATTTT
1 CTAATTCAGTTTAATTTT
12848796 TCAGTATAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (19 bp):
CTAATTCAGTTTAATTTTC
Found at i:12849829 original size:20 final size:20
Alignment explanation
Indices: 12849792--12849829 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12849782 ACCTAACACG
*
12849792 AATTAAAGTTAAGCCATATT
1 AATTAAAGTTAAACCATATT
12849812 AATTAAA-TTAAACACATA
1 AATTAAAGTTAAAC-CATA
12849830 AACATCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (20 bp):
AATTAAAGTTAAACCATATT
Found at i:12850605 original size:15 final size:15
Alignment explanation
Indices: 12850585--12850621 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
12850575 GCTTCAAAAT
12850585 TGCTTCTCGATTTTG
1 TGCTTCTCGATTTTG
12850600 TGCTTCTCGATTTTG
1 TGCTTCTCGATTTTG
12850615 TGCTTCT
1 TGCTTCT
12850622 AGCAATGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.22, G:0.19, T:0.54
Consensus pattern (15 bp):
TGCTTCTCGATTTTG
Found at i:12854338 original size:16 final size:15
Alignment explanation
Indices: 12854313--12854346 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
12854303 AAAGTTGATA
*
12854313 ATAATTAATATATATT
1 ATAATAAATATA-ATT
12854329 ATAATAAATATAATT
1 ATAATAAATATAATT
12854344 ATA
1 ATA
12854347 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:12859227 original size:42 final size:42
Alignment explanation
Indices: 12859173--12859269 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
12859163 CAAGTACGAC
*
12859173 AAAAA-GGGGGAAAGGAAAAAGACATGG-AGGATGACACGAAT
1 AAAAATGGGGGAAAGGAAAAAGACACGGAAGG-TGACACGAAT
12859214 AAAAATGGGGGAAAGGAAAAAGACACGGAAGGTGACACGAAT
1 AAAAATGGGGGAAAGGAAAAAGACACGGAAGGTGACACGAAT
12859256 AAAAATGGGGGAAA
1 AAAAATGGGGGAAA
12859270 TGTTTTTGCT
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
41 5 0.09
42 45 0.85
43 3 0.06
ACGTcount: A:0.52, C:0.07, G:0.34, T:0.07
Consensus pattern (42 bp):
AAAAATGGGGGAAAGGAAAAAGACACGGAAGGTGACACGAAT
Found at i:12868145 original size:8 final size:8
Alignment explanation
Indices: 12868132--12868160 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
12868122 GTCAAATAAA
12868132 AAATAATT
1 AAATAATT
12868140 AAATAATT
1 AAATAATT
12868148 AAATAATT
1 AAATAATT
12868156 AAATA
1 AAATA
12868161 GAACAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
AAATAATT
Found at i:12870033 original size:18 final size:18
Alignment explanation
Indices: 12870010--12870050 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
12870000 TCTTCCATTA
*
12870010 AACTAATGAGTTGGCAAT
1 AACTAATGAGTCGGCAAT
12870028 AACTAATGAGTCGGCAAT
1 AACTAATGAGTCGGCAAT
12870046 AACTA
1 AACTA
12870051 CTTATCTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (18 bp):
AACTAATGAGTCGGCAAT
Found at i:12892833 original size:267 final size:266
Alignment explanation
Indices: 12892330--12892883 Score: 777
Period size: 267 Copynumber: 2.1 Consensus size: 266
12892320 CGCCTTGAAG
** * ** **
12892330 TTGCAATGGAAAAGATTGAAGCCACGACGGCGAACCTTACTTCCCTGGGTTGTAGCGGAGTAGAT
1 TTGCAATTTAAAAGATTGAAGCCACAACGGAAAACCTTACTTCCCTGGGTTGTAGCGGAACAGAT
* * * *
12892395 TGAAGCCACGACGATGAATCTTATCTCTCTGGCATTAAGGCTTGGATTAGCTGAAGTGGAGCGGG
66 TGAAGCCACGACGACGAATCTTATCTCCCTGGCATTAAGACTTGGATTAGCTGAAGTGGAGCGGA
* * * * ** * *
12892460 TTGAAGCTGTGGGCAGCGAATCCTATCTTTTTGGCATTATAGTGCATTAGATTAAAGCCGCAATG
131 TTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGCAGCAGATTAAAGCCGAAACG
* * * *
12892525 GCGAATCTTACTCCCTTGGTGGTGTAATGGAACAGATTGAAGCTACGACAGCCAATCTTTTTTCC
196 GCGAATCTTACTCCCTTGGCGGTGTAATGAAACAAATTGAAGCTACGACAGCCAATCTTGTTTCC
12892590 CCAACA
261 CCAACA
* * *
12892596 TTGCAATTTAAAAGATTGAAGCCGCAACGGAAAATCTTATTTCCCTGGCGTTGTAGCGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGAAAACCTTACTTCCCTGG-GTTGTAGCGGAACAGA
* *
12892661 TTGAAGCCACGACGGCGAATCTTATCTCCCTGGCGTTAAGACTTGGATTAGCTGAAGTGGAGCGG
65 TTGAAGCCACGACGACGAATCTTATCTCCCTGGCATTAAGACTTGGATTAGCTGAAGTGGAGCGG
*
12892726 ATTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGGAGCAGATTAAAGCCGAAAC
130 ATTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGCAGCAGATTAAAGCCGAAAC
* ** *
12892791 GGCGAATCTTACTTCCC-TGGCGGTGTAGTGAAACAAATTGAAGCTACGATGGCGAATCTTGTTT
195 GGCGAATCTTAC-TCCCTTGGCGGTGTAATGAAACAAATTGAAGCTACGACAGCCAATCTTGTTT
12892855 CCCCAACA
259 CCCCAACA
*
12892863 TTGCAATTTAAAAGACTGAAG
1 TTGCAATTTAAAAGATTGAAG
12892884 ATGGCAAATC
Statistics
Matches: 252, Mismatches: 34, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
266 40 0.16
267 208 0.83
268 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (266 bp):
TTGCAATTTAAAAGATTGAAGCCACAACGGAAAACCTTACTTCCCTGGGTTGTAGCGGAACAGAT
TGAAGCCACGACGACGAATCTTATCTCCCTGGCATTAAGACTTGGATTAGCTGAAGTGGAGCGGA
TTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGCAGCAGATTAAAGCCGAAACG
GCGAATCTTACTCCCTTGGCGGTGTAATGAAACAAATTGAAGCTACGACAGCCAATCTTGTTTCC
CCAACA
Found at i:12893045 original size:44 final size:45
Alignment explanation
Indices: 12892943--12893051 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
12892933 AGGTCTTATA
* * * * *
12892943 TCCCTAAAGTTGCAGTAGAGCAGACTCAAGAAAGCAAGTCTTATC
1 TCCCTAAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATCCTATC
* * * * *
12892988 CCCCTAAAATTGTAGTGGGGCAGACTAAATAAA-CAAATCCTGTC
1 TCCCTAAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATCCTATC
12893032 TCCCTAAAGTTGTAGTGGAG
1 TCCCTAAAGTTGTAGTGGAG
12893052 TGGATTAGAG
Statistics
Matches: 51, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
44 25 0.49
45 26 0.51
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (45 bp):
TCCCTAAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATCCTATC
Found at i:12898057 original size:134 final size:134
Alignment explanation
Indices: 12897809--12898089 Score: 539
Period size: 134 Copynumber: 2.1 Consensus size: 134
12897799 TTATTTTAAT
12897809 AATTA-AAA-CAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
1 AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
*
12897872 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAGAGA
66 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
12897937 AGGG
131 AGGG
12897941 AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
1 AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
12898006 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
66 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
12898071 AGGG
131 AGGG
12898075 AATTAGAAAGCAAAT
1 AATTAGAAAGCAAAT
12898090 CCAATATTTC
Statistics
Matches: 146, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
132 5 0.03
133 3 0.02
134 138 0.95
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (134 bp):
AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
AGGG
Found at i:12909133 original size:6 final size:6
Alignment explanation
Indices: 12909124--12909153 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
12909114 AACAAATTAC
12909124 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
12909154 GGCAAAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATTAAA
Found at i:12917626 original size:52 final size:48
Alignment explanation
Indices: 12917607--12917809 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
12917597 TGACAAGTGG
* *
12917607 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
12917653 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
12917705 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
12917751 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
12917797 AAAGTGATAAGTG
1 AAAGTGATAAGTG
12917810 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:12917661 original size:98 final size:98
Alignment explanation
Indices: 12917541--12917809 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
12917531 TTTGAGTACT
*
12917541 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
12917606 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
12917639 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
12917704 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
12917737 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
12917802 GATAAGTG
65 GAAAAGTG
12917810 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:12917817 original size:37 final size:37
Alignment explanation
Indices: 12917773--12917918 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
12917763 GATAGCTTTA
*
12917773 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12917810 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
12917847 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
12917884 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12917919 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:12919248 original size:58 final size:58
Alignment explanation
Indices: 12919171--12919338 Score: 228
Period size: 58 Copynumber: 3.0 Consensus size: 58
12919161 CATGTGAACA
12919171 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
*
12919230 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATTGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
12919286 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
12919337 TG
1 TG
12919339 ATTACGTGTA
Statistics
Matches: 102, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
49 37 0.36
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 50 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.34
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:12919280 original size:28 final size:28
Alignment explanation
Indices: 12919190--12919280 Score: 71
Period size: 31 Copynumber: 3.2 Consensus size: 28
12919180 GTGATTCCGT
*
12919190 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATTG
** * *
12919218 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCATT--G
12919247 TGTAAGACCATAGCTGGGCTATGGCATTG
1 -GTAAGACCATAGCTGGGCTATGGCATTG
12919276 GTAAG
1 GTAAG
12919281 TGATATGTGA
Statistics
Matches: 46, Mismatches: 9, Indels: 16
0.65 0.13 0.23
Matches are distributed among these distances:
27 12 0.26
28 12 0.26
29 2 0.04
30 7 0.15
31 13 0.28
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATTG
Found at i:12919303 original size:49 final size:49
Alignment explanation
Indices: 12919231--12919373 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
12919221 AGTGATATGT
* * *
12919231 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATTGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
12919280 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
12919329 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
12919374 AGAAAACGAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 87 1.00
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:12922579 original size:52 final size:48
Alignment explanation
Indices: 12922560--12922762 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
12922550 TGACAAGTGG
* *
12922560 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
12922606 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
12922658 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
12922704 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
12922750 AAAGTGATAAGTG
1 AAAGTGATAAGTG
12922763 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:12922614 original size:98 final size:98
Alignment explanation
Indices: 12922494--12922762 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
12922484 TTTGAGTACT
*
12922494 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
12922559 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
12922592 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
12922657 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
12922690 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
12922755 GATAAGTG
65 GAAAAGTG
12922763 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:12922770 original size:37 final size:37
Alignment explanation
Indices: 12922726--12922871 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
12922716 GATAGCTTTA
*
12922726 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12922763 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
12922800 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
12922837 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12922872 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:12924200 original size:58 final size:58
Alignment explanation
Indices: 12924123--12924290 Score: 228
Period size: 58 Copynumber: 3.0 Consensus size: 58
12924113 CATGTGAACA
12924123 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
*
12924182 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATTGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
12924238 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
12924289 TG
1 TG
12924291 ATTACGTGTA
Statistics
Matches: 102, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
49 37 0.36
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 50 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.34
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:12924232 original size:28 final size:28
Alignment explanation
Indices: 12924142--12924232 Score: 71
Period size: 31 Copynumber: 3.2 Consensus size: 28
12924132 GTGATTCCGT
*
12924142 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATTG
** * *
12924170 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCATT--G
12924199 TGTAAGACCATAGCTGGGCTATGGCATTG
1 -GTAAGACCATAGCTGGGCTATGGCATTG
12924228 GTAAG
1 GTAAG
12924233 TGATATGTGA
Statistics
Matches: 46, Mismatches: 9, Indels: 16
0.65 0.13 0.23
Matches are distributed among these distances:
27 12 0.26
28 12 0.26
29 2 0.04
30 7 0.15
31 13 0.28
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATTG
Found at i:12924255 original size:49 final size:49
Alignment explanation
Indices: 12924183--12924325 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
12924173 AGTGATATGT
* * *
12924183 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATTGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
12924232 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
12924281 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
12924326 AGAAAACGAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 87 1.00
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:12927531 original size:52 final size:48
Alignment explanation
Indices: 12927512--12927714 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
12927502 TGACAAGTGG
* *
12927512 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
12927558 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
12927610 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
12927656 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
12927702 AAAGTGATAAGTG
1 AAAGTGATAAGTG
12927715 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:12927566 original size:98 final size:98
Alignment explanation
Indices: 12927446--12927714 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
12927436 TTTGAGTACT
*
12927446 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
12927511 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
12927544 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
12927609 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
12927642 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
12927707 GATAAGTG
65 GAAAAGTG
12927715 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:12927722 original size:37 final size:37
Alignment explanation
Indices: 12927678--12927823 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
12927668 GATAGCTTTA
*
12927678 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12927715 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
12927752 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
12927789 GCTACACTTATCTGATC-AGGAAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12927824 ATCATACGTA
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
35 11 0.10
36 5 0.05
37 89 0.85
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:12939004 original size:14 final size:15
Alignment explanation
Indices: 12938985--12939015 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
12938975 TATCTCTTGA
12938985 ATGTTA-TTTATTTT
1 ATGTTATTTTATTTT
12938999 ATGTTATTTTATTTT
1 ATGTTATTTTATTTT
12939014 AT
1 AT
12939016 TACTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
ATGTTATTTTATTTT
Found at i:12944215 original size:35 final size:35
Alignment explanation
Indices: 12944169--12944239 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
12944159 GTTCATAGCT
12944169 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
1 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
12944204 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
1 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
12944239 C
1 C
12944240 TTCTAGTGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (35 bp):
CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
Found at i:12945689 original size:21 final size:21
Alignment explanation
Indices: 12945641--12945689 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
12945631 TTTGGTCGTA
12945641 GCATTGCAACGAGGGACTGCC
1 GCATTGCAACGAGGGACTGCC
**
12945662 GTGTTGCAACGAGGGACTGCC
1 GCATTGCAACGAGGGACTGCC
12945683 GCATTGC
1 GCATTGC
12945690 GACCTTGGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (21 bp):
GCATTGCAACGAGGGACTGCC
Found at i:12951574 original size:5 final size:5
Alignment explanation
Indices: 12951564--12951593 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
12951554 TCATTAAGCT
12951564 GACCC GACCC GACCC GACCC GACCC GACCC
1 GACCC GACCC GACCC GACCC GACCC GACCC
12951594 TATGTAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (5 bp):
GACCC
Found at i:12964010 original size:43 final size:43
Alignment explanation
Indices: 12963963--12964048 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
12963953 TTGTACTGCC
*
12963963 AAATATTGCATTAATATTGATTTTGTTTTAGTACTAAATAAGA
1 AAATATTGCATTAATATTGATTTTGTTTCAGTACTAAATAAGA
* *
12964006 AAATATTGTATTAATATTGGTTTTGTTTCAGTACTAAATAAGA
1 AAATATTGCATTAATATTGATTTTGTTTCAGTACTAAATAAGA
12964049 TAATTTCCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (43 bp):
AAATATTGCATTAATATTGATTTTGTTTCAGTACTAAATAAGA
Found at i:12967139 original size:54 final size:54
Alignment explanation
Indices: 12967029--12967145 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 54
12967019 AAGTTAGTGT
* * *
12967029 GTTACACGGCCTAGCACACGGCCTGCGACACGGCCGTGTGTTGCAAGTCAGAGA
1 GTTACACGGCCTAGCACACGGCCTGCGACACGGCCATGTGCTGCAACTCAGAGA
* * * * *
12967083 GTTACACGGTCT-GACATACGGCCTGCGATACGGCCATGTGACT-CAACTCGGTGA
1 GTTACACGGCCTAG-CACACGGCCTGCGACACGGCCATGTG-CTGCAACTCAGAGA
*
12967137 GTTGCACGG
1 GTTACACGG
12967146 GTGGAGACAC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.02
54 50 0.96
55 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (54 bp):
GTTACACGGCCTAGCACACGGCCTGCGACACGGCCATGTGCTGCAACTCAGAGA
Found at i:12991351 original size:91 final size:91
Alignment explanation
Indices: 12991248--12991431 Score: 368
Period size: 91 Copynumber: 2.0 Consensus size: 91
12991238 TAAAAGTTGC
12991248 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
1 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
12991313 CTCGTAAAACCCAAGAAAAGTCCAAA
66 CTCGTAAAACCCAAGAAAAGTCCAAA
12991339 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
1 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
12991404 CTCGTAAAACCCAAGAAAAGTCCAAA
66 CTCGTAAAACCCAAGAAAAGTCCAAA
12991430 AT
1 AT
12991432 TTCCATATTA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 93 1.00
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (91 bp):
ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
CTCGTAAAACCCAAGAAAAGTCCAAA
Found at i:12991661 original size:5 final size:5
Alignment explanation
Indices: 12991653--12991703 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
12991643 AAGTATAACT
12991653 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
12991703 T
1 T
12991704 GTCCTACCCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TATCA
Found at i:12993565 original size:16 final size:18
Alignment explanation
Indices: 12993539--12993571 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
12993529 TAGAATCGGG
12993539 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
12993556 TTGA-AAAATTAATTTA
1 TTGAGAAAATTAATTTA
12993572 TTTATCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:12998842 original size:12 final size:12
Alignment explanation
Indices: 12998825--12998857 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
12998815 TGATGAAAAT
12998825 ATCATCTTTTTC
1 ATCATCTTTTTC
12998837 ATCATCTTTTTC
1 ATCATCTTTTTC
12998849 ATCATCTTT
1 ATCATCTTT
12998858 CCCAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (12 bp):
ATCATCTTTTTC
Found at i:12999733 original size:47 final size:48
Alignment explanation
Indices: 12999681--12999869 Score: 170
Period size: 47 Copynumber: 3.9 Consensus size: 48
12999671 TGGTTGGACC
* *
12999681 ATGGCAACA-TGTAATATGTGATTTCTGTATAAGACCATAGCTGAGTT
1 ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTGAGAT
* * * *
12999728 ATGGCATCGGTGTGATGTGATTATGAGTTTCTGTATAAGACCATATCTGAGAT
1 ATGGCATCAGTGT-A-AT-A-TGTGA-TTTCTGTATAAGACCATAGCTGAGAT
* * * * *
12999781 ATGGCATCAGTGTGATATGTG-CTACTGTGTAAGACCATATCTGAGAT
1 ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTGAGAT
* * * *
12999828 ATGACATCAGTGTGATATGTGA--TCCGTATAAGACCATGGCTG
1 ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTG
12999870 GGCAATAGCT
Statistics
Matches: 116, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
46 15 0.13
47 50 0.43
48 3 0.03
49 4 0.03
50 2 0.02
51 2 0.02
52 4 0.03
53 36 0.31
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (48 bp):
ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTGAGAT
Found at i:13007771 original size:18 final size:17
Alignment explanation
Indices: 13007750--13007784 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13007740 TTTTATATTA
*
13007750 TTAATATTTTAATATGTT
1 TTAATAATTTAAT-TGTT
13007768 TTAATAATTTAATTGTT
1 TTAATAATTTAATTGTT
13007785 GAACTTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TTAATAATTTAATTGTT
Found at i:13008818 original size:3 final size:3
Alignment explanation
Indices: 13008803--13008864 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
13008793 CGTATGGAAG
* *
13008803 TAA TAA TAC TAA TAA TAA TATA TAA TAAA TAA TAGA TAA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TA-A TAA TAA TAA TAA
*
13008850 T-A CAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
13008865 GCAATTTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 2 0.04
3 37 0.77
4 9 0.19
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:13008829 original size:19 final size:20
Alignment explanation
Indices: 13008804--13008862 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
13008794 GTATGGAAGT
13008804 AATAATACTAATAATAATA-
1 AATAATACTAATAATAATAC
* *
13008823 TATAATAAATAATAGATAATAC
1 AATAAT-ACTAATA-ATAATAC
13008845 AATAATAC-AATAATAATA
1 AATAATACTAATAATAATA
13008863 ATGCAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 11 0.33
20 10 0.30
21 7 0.21
22 5 0.15
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (20 bp):
AATAATACTAATAATAATAC
Found at i:13008835 original size:14 final size:13
Alignment explanation
Indices: 13008804--13008864 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 13
13008794 GTATGGAAGT
*
13008804 AATAATACTAAT-
1 AATAATAATAATA
13008816 AATAATATATAATA
1 AATAATA-ATAATA
13008830 AATAATAGATAATA
1 AATAATA-ATAATA
*
13008844 CAATAAT-ACAAT-
1 -AATAATAATAATA
13008856 AATAATAAT
1 AATAATAAT
13008865 GCAATTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.15
12 8 0.20
13 8 0.20
14 13 0.32
15 6 0.15
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:13008841 original size:11 final size:10
Alignment explanation
Indices: 13008803--13008863 Score: 54
Period size: 11 Copynumber: 5.9 Consensus size: 10
13008793 CGTATGGAAG
*
13008803 TAATAAT-AC
1 TAATAATAAA
13008812 TAATAAT-AA
1 TAATAATAAA
13008821 TATATAATAAA
1 TA-ATAATAAA
13008832 TAATAGATAATA
1 TAATA-ATAA-A
*
13008844 CAATAATACAA
1 TAATAATA-AA
13008855 TAATAATAA
1 TAATAATAA
13008864 TGCAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
9 10 0.23
10 9 0.20
11 19 0.43
12 6 0.14
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:13010827 original size:132 final size:132
Alignment explanation
Indices: 13010479--13011370 Score: 1177
Period size: 132 Copynumber: 6.8 Consensus size: 132
13010469 GTTTCTTCTG
* * * * *
13010479 TCTATTCCACTGTTGCCCCGGG-AGATAGAAATACTGGCTTCAATGTACTCCACTGTAACCTCAA
1 TCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
* * *
13010543 GGAGGTAAAATCCACCATCTTTGATCTACTCCACTACTGCTTAGGGAGACAATATCTGAAATCTT
65 GGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
13010608 CAA
130 CAA
* *
13010611 TCTATTCCACTGTTGCCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAG
1 TCTATTCCACTGCTG-CCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
** *
13010676 GGAGGTAAAATATGCCATCTTTGATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
65 GGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
13010741 CAA
130 CAA
* * *
13010744 TCTATTTCGCTGCTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
1 TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
* * * *
13010809 GAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACTGTTTAGGGAAACAAGATCTGAAATCTTC
66 GAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTC
13010874 AA
131 AA
** * *
13010876 TCTATTCTGCTGCTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGA
1 TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
* * * * * * * * *
13010941 GATGTAAAATCTGCCGTCTTCGATCTGCTTCGCTA-T-CTATACAGGAAGGCAAGATCTAAAATC
66 GAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATC
*
13011004 TTCAG
128 TTCAA
* *
13011009 TCTATTCCACTGTTGCCCA-GGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAG
1 TCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
* * * *
13011073 GGAGGTAAAATCCGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
65 GGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
13011138 CAA
130 CAA
13011141 TCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-G
1 TCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
* * * * *
13011204 ATGAGGTAAAATCCACCATCTTTGATCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCT
65 -GGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCT
13011269 TCAA
129 TCAA
** ** * * * *
13011273 TCTATTCTGCTGCTATCCAGAGAAGT-CAATTACTGTCTTCAATGTACTCCACTGTAACCACAGA
1 TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
*
13011337 GAGGTAAAATCCACCATCTTTGATCTGCTCCACT
66 GAGGTAAAATCCGCCATCTTTGATCTGCTCCACT
13011371 GTCAATGCAG
Statistics
Matches: 674, Mismatches: 74, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
130 1 0.00
131 69 0.10
132 376 0.56
133 222 0.33
134 4 0.01
135 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
GAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTC
AA
Found at i:13010996 original size:265 final size:263
Alignment explanation
Indices: 13010504--13011370 Score: 1142
Period size: 265 Copynumber: 3.3 Consensus size: 263
13010494 CCCCGGGAGA
* * *
13010504 TAGAAATACTGGCTTCAATGTACTCCACTGTAACCTCAAGGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
* * *
13010569 TACTCCACTACTGCTTAGGGAGACAATATCTGAAATCTTCAATCTATTCCACTGTTGCCCCAGGG
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG-CCCAGGG
* * *
13010634 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATATGCCATCTTTG
130 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTG
*
13010699 ATCTG-TTCC-A-CTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTC
195 ATCTGCTTCCTATCTA-T-C--AGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTC
13010761 CAGGGAAG
256 CAGGGAAG
***
13010769 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
* * ** *
13010834 TGCTCCACTACTGTTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTGTCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
* * *
13010899 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGATGTAAAATCTGCCGTCTTCGA
131 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTGA
* * * * * * *
13010964 TCTGCTTCGCTATCTATACAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGTTGCCCA-
196 TCTGCTTC-CTATCTAT-CAGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTCCAG
13011028 GGAAG
259 GGAAG
* * * *
13011033 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCTATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGAT
* *
13011098 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
**
13011163 -AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-GATGAGGTAAAATCCACCATCTT
130 AAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGA-GAGGTAAAATCTGCCATCTT
* * * *
13011226 TGATCTACTCCACTACTGCT-T-GGGGAGGCAAGATCTGAAATCTTCAATCTA-TTCTGCTGCTA
193 TGATCTGCTTC-CTA-T-CTATCAGGGAGGCAAGATCTGAAATCTTCAATCTATTTC-GCTGCTG
*
13011288 TCCAGAGAAG
254 TCCAGGGAAG
* * *
13011298 T-CAATTACTGTCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
13011362 TGCTCCACT
66 TGCTCCACT
13011371 GTCAATGCAG
Statistics
Matches: 525, Mismatches: 66, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
263 67 0.13
264 113 0.22
265 334 0.64
266 3 0.01
267 5 0.01
268 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (263 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTGA
TCTGCTTCCTATCTATCAGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTCCAGGG
AAG
Found at i:13011195 original size:43 final size:44
Alignment explanation
Indices: 13011003--13011195 Score: 119
Period size: 44 Copynumber: 4.4 Consensus size: 44
13010993 GATCTAAAAT
* * * *
13011003 CTTCAGTCTATTCCACTGTTGCCCAGGAAGATAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGAATCTACTGG
* * * * ** **
13011046 CTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCTAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAGATAGAATCTACTGG
* * * ** *
13011091 CTTCGATCTGCTCCACTACTGCTTAGGGAGATA-AGATCTGTAAT--
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGA-ATC--TACTGG
*
13011135 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGAATCTACTGG
*
13011178 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
13011196 TAACCACGAT
Statistics
Matches: 109, Mismatches: 31, Indels: 20
0.68 0.19 0.12
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 34 0.31
44 51 0.47
45 18 0.17
46 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAGATAGAATCTACTGG
Found at i:13011212 original size:397 final size:397
Alignment explanation
Indices: 13010504--13011393 Score: 1267
Period size: 397 Copynumber: 2.2 Consensus size: 397
13010494 CCCCGGGAGA
* *
13010504 TAGAAATACTGGCTTCAATGTACTCCACTGTAACCTCA-AGGAGGTAAAATCCACCATCTTTGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGA-GAGGTAAAATCCACCATCTTTGAT
* * * * *
13010568 CTACTCCACTACTGCT-T-AGGGAGACAATATCTGAAATCTTCAATCTATTCCACTGTTGCCCCA
65 CTGCTCCACTA-T-CTATCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGTTGCCCCA
*
13010631 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATATGCCATCT
128 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATACGCCATCT
* * * * *
13010696 TTGATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTC
193 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
***
13010761 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCAT
258 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
* * *
13010826 CTTTGATCTGCTCCACTACTGTTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTG
323 CTTTGATCTACTCCACTACTGCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTA
*
13010891 TCCAGGGAAG
388 TCCAGAGAAG
* ** * *
13010901 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGATGTAAAATCTGCCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
* * *
13010966 TGCTTCGCTATCTATACAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGTTG-CCCA-G
66 TGCTCCACTATCTAT-CAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGTTGCCCCAGG
* *
13011029 GAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACC-TCAGGGAGGTAAAATCCGCTATCT
130 GAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCAT-AGGGAGGTAAAATACGCCATCT
* *
13011093 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
193 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
*
13011158 CAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-GATGAGGTAAAATCCACC
258 CAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG-GGAGGTAAAATCCACC
* **
13011221 ATCTTTGATCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCTTCAATCTATTCTGCTGC
321 ATCTTTGATCTACTCCACTACTGCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGC
13011286 TATCCAGAGAAG
386 TATCCAGAGAAG
* *
13011298 T-CAATTACTGTCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
* * *
13011362 TGCTCCACTGTCAATGCAGAAAGGCAAGATCT
66 TGCTCCACTATCTAT-CAGGAAGGCAAGATCT
13011394 GCTAGCATCA
Statistics
Matches: 436, Mismatches: 49, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
395 2 0.00
396 93 0.21
397 304 0.70
398 37 0.08
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (397 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
TGCTCCACTATCTATCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGTTGCCCCAGGG
AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATACGCCATCTTCG
ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTT
TGATCTACTCCACTACTGCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTATCC
AGAGAAG
Found at i:13013623 original size:19 final size:19
Alignment explanation
Indices: 13013599--13013638 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
13013589 GGTTTAGCAG
13013599 AAAAAATCCAAAAGAATGA
1 AAAAAATCCAAAAGAATGA
**
13013618 AAAAAATCGTAAAGAATGA
1 AAAAAATCCAAAAGAATGA
13013637 AA
1 AA
13013639 GAACATTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (19 bp):
AAAAAATCCAAAAGAATGA
Found at i:13017587 original size:3 final size:3
Alignment explanation
Indices: 13017572--13017633 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
13017562 CGTATGGAAG
* *
13017572 TAA TAA TAC TAA TAA TAA TATA TAA TAAA TAA TAGA TAA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TA-A TAA TAA TAA TAA
*
13017619 T-A CAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
13017634 GCAATTTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 2 0.04
3 37 0.77
4 9 0.19
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:13017598 original size:19 final size:20
Alignment explanation
Indices: 13017573--13017631 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
13017563 GTATGGAAGT
13017573 AATAATACTAATAATAATA-
1 AATAATACTAATAATAATAC
* *
13017592 TATAATAAATAATAGATAATAC
1 AATAAT-ACTAATA-ATAATAC
13017614 AATAATAC-AATAATAATA
1 AATAATACTAATAATAATA
13017632 ATGCAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 11 0.33
20 10 0.30
21 7 0.21
22 5 0.15
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (20 bp):
AATAATACTAATAATAATAC
Found at i:13017604 original size:14 final size:13
Alignment explanation
Indices: 13017573--13017633 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 13
13017563 GTATGGAAGT
*
13017573 AATAATACTAAT-
1 AATAATAATAATA
13017585 AATAATATATAATA
1 AATAATA-ATAATA
13017599 AATAATAGATAATA
1 AATAATA-ATAATA
*
13017613 CAATAAT-ACAAT-
1 -AATAATAATAATA
13017625 AATAATAAT
1 AATAATAAT
13017634 GCAATTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.15
12 8 0.20
13 8 0.20
14 13 0.32
15 6 0.15
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:13017610 original size:11 final size:10
Alignment explanation
Indices: 13017572--13017632 Score: 54
Period size: 11 Copynumber: 5.9 Consensus size: 10
13017562 CGTATGGAAG
*
13017572 TAATAAT-AC
1 TAATAATAAA
13017581 TAATAAT-AA
1 TAATAATAAA
13017590 TATATAATAAA
1 TA-ATAATAAA
13017601 TAATAGATAATA
1 TAATA-ATAA-A
*
13017613 CAATAATACAA
1 TAATAATA-AA
13017624 TAATAATAA
1 TAATAATAA
13017633 TGCAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
9 10 0.23
10 9 0.20
11 19 0.43
12 6 0.14
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:13035124 original size:42 final size:44
Alignment explanation
Indices: 13035075--13035162 Score: 144
Period size: 42 Copynumber: 2.0 Consensus size: 44
13035065 TTTGAATGTT
13035075 TCGTTATAGAATATGTATATG-TTTTTTT-ATTTTTTGGTTTAA
1 TCGTTATAGAATATGTATATGTTTTTTTTAATTTTTTGGTTTAA
13035117 TCGTTATAGAATATGTATATGTTTTTTTTTTAATTTTTTGGTTTAA
1 TCGTTATAGAATATGTATATG--TTTTTTTTAATTTTTTGGTTTAA
13035163 ACTATGGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
42 21 0.50
45 7 0.17
46 14 0.33
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (44 bp):
TCGTTATAGAATATGTATATGTTTTTTTTAATTTTTTGGTTTAA
Found at i:13037210 original size:114 final size:114
Alignment explanation
Indices: 13037010--13037233 Score: 448
Period size: 114 Copynumber: 2.0 Consensus size: 114
13037000 GTCATCTCTG
13037010 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
1 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
13037075 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCCTTTT
66 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCCTTTT
13037124 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
1 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
13037189 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCC
66 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCC
13037234 GTACATAGGA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (114 bp):
TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCCTTTT
Found at i:13039422 original size:17 final size:16
Alignment explanation
Indices: 13039389--13039427 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
13039379 ATTTGTTATA
*
13039389 ATTTATAAAAAATATTT
1 ATTT-TAAAAAAAATTT
13039406 ATTTTAAAATAAAATTT
1 ATTTTAAAA-AAAATTT
13039423 ATTTT
1 ATTTT
13039428 CCCGAGTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTTAAAAAAAATTT
Found at i:13041555 original size:26 final size:26
Alignment explanation
Indices: 13041519--13041570 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13041509 GTCTCCTTAC
13041519 CAACTTGGAACGTGTAAGGAGAGGCA
1 CAACTTGGAACGTGTAAGGAGAGGCA
13041545 CAACTTGGAACGTGTAAGGAGAGGCA
1 CAACTTGGAACGTGTAAGGAGAGGCA
13041571 TTGGACAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.35, T:0.15
Consensus pattern (26 bp):
CAACTTGGAACGTGTAAGGAGAGGCA
Found at i:13047584 original size:43 final size:43
Alignment explanation
Indices: 13047523--13047610 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
13047513 TTTCAAAGTC
13047523 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
1 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
13047566 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
1 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
13047609 AC
1 AC
13047611 TTTTTCACAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (43 bp):
ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
Found at i:13048337 original size:50 final size:50
Alignment explanation
Indices: 13048220--13048516 Score: 301
Period size: 50 Copynumber: 5.8 Consensus size: 50
13048210 GATAATAACA
* * * ** * * *
13048220 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCCTTTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
13048269 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** * *
13048319 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
*
13048369 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
** * *
13048419 TGCCAACACCATGTCTCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
13048475 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
13048517 TTACCCAAAT
Statistics
Matches: 206, Mismatches: 34, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
48 1 0.00
49 36 0.17
50 127 0.62
51 1 0.00
53 2 0.01
56 39 0.19
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:13054445 original size:15 final size:15
Alignment explanation
Indices: 13054425--13054463 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
13054415 CACAATCGCA
*
13054425 ACAAGTAATAAAGTG
1 ACAAGTAAAAAAGTG
13054440 ACAAGTAAAAAAGTG
1 ACAAGTAAAAAAGTG
13054455 ACAAGTAAA
1 ACAAGTAAA
13054464 TGTCGTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.08, G:0.18, T:0.15
Consensus pattern (15 bp):
ACAAGTAAAAAAGTG
Found at i:13055172 original size:2 final size:2
Alignment explanation
Indices: 13055165--13055211 Score: 51
Period size: 2 Copynumber: 23.5 Consensus size: 2
13055155 GAGTAAGTAA
* *
13055165 AT AT AT AT AT GT AT AT AT AT AT AT GA- AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
*
13055207 GT AT A
1 AT AT A
13055212 AGTATGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
1 1 0.03
2 36 0.95
3 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:13055195 original size:28 final size:29
Alignment explanation
Indices: 13055163--13055227 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
13055153 GAGAGTAAGT
*
13055163 AAATATATATATGTATATATATA-TATG-A
1 AAATATATATATATATATATA-AGTATGTA
*
13055191 AAATATATATATATATGTATAAGTATGTA
1 AAATATATATATATATATATAAGTATGTA
13055220 AAAT-TATA
1 AAATATATA
13055228 AAATATAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 27 0.82
29 5 0.15
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (29 bp):
AAATATATATATATATATATAAGTATGTA
Found at i:13055211 original size:14 final size:14
Alignment explanation
Indices: 13055163--13055202 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
13055153 GAGAGTAAGT
*
13055163 AAATATATATATGT
1 AAATATATATATGA
*
13055177 ATATATATATATGA
1 AAATATATATATGA
13055191 AAATATATATAT
1 AAATATATATAT
13055203 ATATGTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (14 bp):
AAATATATATATGA
Found at i:13055700 original size:55 final size:59
Alignment explanation
Indices: 13055638--13055767 Score: 169
Period size: 65 Copynumber: 2.2 Consensus size: 59
13055628 ACACAAATTA
13055638 TAAAATATATA-A-AAT-TATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
1 TAAAATATATATACAATATATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
*
13055694 TAAATATATGTATATGTACCAATATATGCGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
1 TAAA-ATA--TATA--TA-CAATATATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
13055759 T-AAATATAT
1 TAAAATATAT
13055768 GTATATTTAT
Statistics
Matches: 64, Mismatches: 1, Indels: 13
0.82 0.01 0.17
Matches are distributed among these distances:
56 4 0.06
57 3 0.05
59 4 0.06
61 3 0.05
62 1 0.02
63 3 0.05
64 5 0.08
65 41 0.64
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (59 bp):
TAAAATATATATACAATATATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
Found at i:13059580 original size:43 final size:43
Alignment explanation
Indices: 13059484--13059624 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
13059474 TTACGAAAAT
* **** *
13059484 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGC-TTAAAAAA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
* *
13059526 AAGACGTCGCTAAAGATCATGTTCTTTAGCGGGGCTTTCTTCAC
1 AA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
*
13059570 AAACGCCGCTAAAGATCATATTCTTTAGCGGCGCTTTCTTCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
*
13059613 AAACGCCACTAA
1 AAACGCCGCTAA
13059625 TTTTGGGATT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.02
43 78 0.92
44 5 0.06
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
Found at i:13060021 original size:21 final size:21
Alignment explanation
Indices: 13059997--13060064 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
13059987 TTCTTTTGAA
13059997 CCTCTGCTTCCCTCGCTACCG
1 CCTCTGCTTCCCTCGCTACCG
* * *
13060018 CCTCTACTTCTCTCGCTACAG
1 CCTCTGCTTCCCTCGCTACCG
13060039 CCTCTGCTTCCCTCGCTACCG
1 CCTCTGCTTCCCTCGCTACCG
13060060 CCTCT
1 CCTCT
13060065 ACTTTAAGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.07, C:0.50, G:0.12, T:0.31
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTACCG
Found at i:13061927 original size:25 final size:25
Alignment explanation
Indices: 13061896--13062469 Score: 166
Period size: 25 Copynumber: 21.7 Consensus size: 25
13061886 ATTTTTCTCA
13061896 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
13061921 ATGTAAGTTATGTATATATTA-TAAAAGAT
1 ATGTAAGTTATGTAT-TA--AGT-AAA-TT
* *
13061950 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
13061975 ATATAAGTTATGTAGGTTATGT--ATT
1 ATGTAAGTTATGTA--TTAAGTAAATT
* *
13062000 ATGTAAGTTATATAAGCTATGTCAGT-TATT
1 ATGTAAG-T-TAT--G-TAT-TAAGTAAATT
13062030 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
13062055 ATATAAGTTATGTAGGTTATGT--ATT
1 ATGTAAGTTATGTA--TTAAGTAAATT
*
13062080 ATGTAAGTTATATAAGCTATGTAAGT-TATT
1 ATGTAAG-T-TAT--G-TAT-TAAGTAAATT
* **
13062110 ATGTAAGTTAAGATATAATATATGTTGATT
1 ATGTAAGTTATG-TAT--TA-A-GTAAATT
* * *
13062140 ATGT-A-TTAAGTAAATTATGTAAGTT
1 ATGTAAGTTATGT--ATTAAGTAAATT
* *
13062165 ATGT-A-TTACGTAAGTTATA-TAAGTT
1 ATGTAAGTTATGT-A-TTA-AGTAAATT
* * * *
13062190 ATGTAAGTTATATAAGCTATGTAAGTT
1 ATGTAAGTTATGT-A-TTAAGTAAATT
* * *
13062217 AT-TATGTAAT-AAGTTAAGGTATAATAT
1 ATGTAAGTTATGTA-TTAA-GTA-AAT-T
13062244 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
13062269 ATGTAAGTTATGTATATATTA-TAAAAGAT
1 ATGTAAGTTATGTAT-TA--AGT-AAA-TT
* *
13062298 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
13062323 ATATAAGTTATGTAGGTTATGT--ATT
1 ATGTAAGTTATGTA--TTAAGTAAATT
*
13062348 ATGTAAGTTATATAAGCTATGTAAGT-TATT
1 ATGTAAG-T-TAT--G-TAT-TAAGTAAATT
*
13062378 ATGTAAGTTATGTATTATA-TAAGTT
1 ATGTAAGTTATGTATTA-AGTAAATT
* *
13062403 ATGT-A-TTATGTAAGTTATGT-ATTT
1 ATGTAAGTTATGT-A-TTAAGTAAATT
* * *
13062427 ATTTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
13062452 ATATAAGTTATATATTAA
1 ATGTAAGTTATGTATTAA
13062470 AATAAAATAG
Statistics
Matches: 430, Mismatches: 55, Indels: 128
0.70 0.09 0.21
Matches are distributed among these distances:
23 6 0.01
24 27 0.06
25 167 0.39
26 35 0.08
27 58 0.13
28 39 0.09
29 55 0.13
30 43 0.10
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (25 bp):
ATGTAAGTTATGTATTAAGTAAATT
Found at i:13061970 original size:16 final size:16
Alignment explanation
Indices: 13061949--13062453 Score: 283
Period size: 16 Copynumber: 30.8 Consensus size: 16
13061939 TTATAAAAGA
13061949 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
13061965 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
*
13061983 TATGTAGGTTATGTAT
1 TATGTAAGTTATGTAT
13061999 TATGTAAGTTA--TA-
1 TATGTAAGTTATGTAT
* * *
13062012 TAAGCTATGTCA-GTTAT
1 TATG-TAAGTTATG-TAT
13062029 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
* * *
13062045 TAAGTAAATTATATAAGT
1 TATGTAAGTTATGT-A-T
*
13062063 TATGTAGGTTATGTAT
1 TATGTAAGTTATGTAT
* *
13062079 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
13062097 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
*
13062109 TATGTAAGTTAAGATAT
1 TATGTAAGTTATG-TAT
* * *
13062126 AATATATGTTGAT-TAT
1 TATGTAAGTT-ATGTAT
*
13062142 GTAT-TAAG-TA--AAT
1 -TATGTAAGTTATGTAT
13062155 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
* *
13062171 TACGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
13062189 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
13062207 TATGTAAGTTAT-TAT
1 TATGTAAGTTATGTAT
* *
13062222 GTAATAAGTTAAGGTAT-AAT
1 -T-AT--G-TAAGTTATGTAT
13062242 ATATGTAAGTTATGTAT
1 -TATGTAAGTTATGTAT
* *
13062259 TAAGTAAATTATGTAAGT
1 TATGTAAGTTATGT-A-T
* ** *
13062277 TATGTATATATTATAAAAGA
1 TATGTA-A-GTTAT-GTA-T
13062297 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
13062313 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
*
13062331 TATGTAGGTTATGTAT
1 TATGTAAGTTATGTAT
* *
13062347 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
13062365 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
13062377 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
13062393 TATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
13062409 TATGTAAGTTATGTATT
1 TATGTAAGTTATGTA-T
*
13062426 TATTTAAGTTATGTAT
1 TATGTAAGTTATGTAT
13062442 TATGTAAGTTAT
1 TATGTAAGTTAT
13062454 ATAAGTTATA
Statistics
Matches: 384, Mismatches: 61, Indels: 88
0.72 0.11 0.17
Matches are distributed among these distances:
12 19 0.05
13 11 0.03
14 12 0.03
15 4 0.01
16 169 0.44
17 48 0.12
18 93 0.24
19 5 0.01
20 23 0.06
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:13062059 original size:80 final size:80
Alignment explanation
Indices: 13061949--13062119 Score: 315
Period size: 80 Copynumber: 2.1 Consensus size: 80
13061939 TTATAAAAGA
* *
13061949 TATGTAAGTTATGTATTATGTAAGTTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
1 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
*
13062014 AGCTATGTCAGTTAT
66 AGCTATGTAAGTTAT
13062029 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
1 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
13062094 AGCTATGTAAGTTAT
66 AGCTATGTAAGTTAT
13062109 TATGTAAGTTA
1 TATGTAAGTTA
13062120 AGATATAATA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 88 1.00
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.46
Consensus pattern (80 bp):
TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
AGCTATGTAAGTTAT
Found at i:13062157 original size:101 final size:106
Alignment explanation
Indices: 13062029--13062324 Score: 358
Period size: 113 Copynumber: 2.8 Consensus size: 106
13062019 TGTCAGTTAT
* *
13062029 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTA-G-GTTATGT-A-TTATGTAAGTTA
1 TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTACGAGTTATATAAGTTATGTAAGTTA
13062090 TATAAGCTATGTAAGTTATTATG-TAAGTTAAGATATAATA
66 TATAAGCTATGTAAGTTATTATGATAAGTTAAGATATAATA
*
13062130 TATGT-TGATTATGTATTAAGTAAATTATGTAAGTTATGTATTACGTAAGTTATATAAGTTATGT
1 TATGTAAG-TTATGTATTAAGTAAATTATGTAAGTTATG---TACG--AGTTATATAAGTTATGT
*
13062194 AAGTTATATAAGCTATGTAAGTTATTATGTAATAAGTTAAGGTATAATA
60 AAGTTATATAAGCTATGTAAGTTATTATG--ATAAGTTAAGATATAATA
* * * *
13062243 TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTA-TATATTATAAAAGATATGTAAGTT
1 TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTACGA-GTTATATAAGTTATGTAAGTT
* *
13062307 ATGT-A-TTATGTAAGTTAT
65 ATATAAGCTATGTAAGTTAT
13062325 ATAAGTTATG
Statistics
Matches: 169, Mismatches: 11, Indels: 25
0.82 0.05 0.12
Matches are distributed among these distances:
100 1 0.01
101 34 0.20
104 2 0.01
105 1 0.01
106 12 0.07
107 2 0.01
108 27 0.16
109 1 0.01
110 37 0.22
113 51 0.30
114 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.44
Consensus pattern (106 bp):
TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTACGAGTTATATAAGTTATGTAAGTTA
TATAAGCTATGTAAGTTATTATGATAAGTTAAGATATAATA
Found at i:13062465 original size:9 final size:9
Alignment explanation
Indices: 13061896--13062462 Score: 341
Period size: 9 Copynumber: 64.2 Consensus size: 9
13061886 ATTTTTCTCA
13061896 ATGTAAGTT
1 ATGTAAGTT
13061905 ATGT-A-TT
1 ATGTAAGTT
* *
13061912 AAGTAAATT
1 ATGTAAGTT
13061921 ATGTAAGTT
1 ATGTAAGTT
*
13061930 ATGTATATATT
1 ATGTA-A-GTT
** *
13061941 ATAAAAGAT
1 ATGTAAGTT
13061950 ATGTAAGTT
1 ATGTAAGTT
13061959 ATGT-A-TT
1 ATGTAAGTT
13061966 ATGTAAGTT
1 ATGTAAGTT
*
13061975 ATATAAGTT
1 ATGTAAGTT
*
13061984 ATGTAGGTT
1 ATGTAAGTT
13061993 ATGT-A-TT
1 ATGTAAGTT
13062000 ATGTAAGTT
1 ATGTAAGTT
* *
13062009 ATATAAGCT
1 ATGTAAGTT
*
13062018 ATGTCAGTTATT
1 ATGTAAG---TT
13062030 ATGTAAGTT
1 ATGTAAGTT
13062039 ATGT-A-TT
1 ATGTAAGTT
* *
13062046 AAGTAAATT
1 ATGTAAGTT
*
13062055 ATATAAGTT
1 ATGTAAGTT
*
13062064 ATGTAGGTT
1 ATGTAAGTT
13062073 ATGT-A-TT
1 ATGTAAGTT
13062080 ATGTAAGTT
1 ATGTAAGTT
* *
13062089 ATATAAGCT
1 ATGTAAGTT
13062098 ATGTAAGTTATT
1 ATGTAAG---TT
13062110 ATGTAAGTT
1 ATGTAAGTT
* *
13062119 AAGATATAATAT
1 ATG-TA-AGT-T
*
13062131 ATGT-TGATT
1 ATGTAAG-TT
13062140 ATGT-A-TT
1 ATGTAAGTT
* *
13062147 AAGTAAATT
1 ATGTAAGTT
13062156 ATGTAAGTT
1 ATGTAAGTT
13062165 ATGT-A-TT
1 ATGTAAGTT
*
13062172 ACGTAAGTT
1 ATGTAAGTT
*
13062181 ATATAAGTT
1 ATGTAAGTT
13062190 ATGTAAGTT
1 ATGTAAGTT
* *
13062199 ATATAAGCT
1 ATGTAAGTT
13062208 ATGTAAGTT
1 ATGTAAGTT
*
13062217 AT-TATG-T
1 ATGTAAGTT
*
13062224 A-ATAAGTT
1 ATGTAAGTT
* *
13062232 AAGGTATAATAT
1 -ATGTA-AGT-T
13062244 ATGTAAGTT
1 ATGTAAGTT
13062253 ATGT-A-TT
1 ATGTAAGTT
* *
13062260 AAGTAAATT
1 ATGTAAGTT
13062269 ATGTAAGTT
1 ATGTAAGTT
*
13062278 ATGTATATATT
1 ATGTA-A-GTT
** *
13062289 ATAAAAGAT
1 ATGTAAGTT
13062298 ATGTAAGTT
1 ATGTAAGTT
13062307 ATGT-A-TT
1 ATGTAAGTT
13062314 ATGTAAGTT
1 ATGTAAGTT
*
13062323 ATATAAGTT
1 ATGTAAGTT
*
13062332 ATGTAGGTT
1 ATGTAAGTT
13062341 ATGT-A-TT
1 ATGTAAGTT
13062348 ATGTAAGTT
1 ATGTAAGTT
* *
13062357 ATATAAGCT
1 ATGTAAGTT
13062366 ATGTAAGTTATT
1 ATGTAAG---TT
13062378 ATGTAAGTT
1 ATGTAAGTT
13062387 ATGT-A-TT
1 ATGTAAGTT
*
13062394 ATATAAGTT
1 ATGTAAGTT
13062403 ATGT-A-TT
1 ATGTAAGTT
13062410 ATGTAAGTT
1 ATGTAAGTT
*
13062419 ATGT-ATTT
1 ATGTAAGTT
*
13062427 ATTTAAGTT
1 ATGTAAGTT
13062436 ATGT-A-TT
1 ATGTAAGTT
13062443 ATGTAAGTT
1 ATGTAAGTT
*
13062452 ATATAAGTT
1 ATGTAAGTT
13062461 AT
1 AT
13062463 ATATTAAAAT
Statistics
Matches: 427, Mismatches: 81, Indels: 100
0.70 0.13 0.16
Matches are distributed among these distances:
7 77 0.18
8 32 0.07
9 261 0.61
10 11 0.03
11 19 0.04
12 27 0.06
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:13062633 original size:12 final size:12
Alignment explanation
Indices: 13062616--13062696 Score: 50
Period size: 12 Copynumber: 7.2 Consensus size: 12
13062606 GTAGGCTATG
13062616 TATTATGTAAGT
1 TATTATGTAAGT
13062628 TATTA--TAAGT
1 TATTATGTAAGT
* *
13062638 AAGTTATGAAAGT
1 TA-TTATGTAAGT
* *
13062651 TA-TATATAAAT
1 TATTATGTAAGT
*
13062662 T-TATATATAAG-
1 TAT-TATGTAAGT
13062673 --TTATGTAAGT
1 TATTATGTAAGT
13062683 TATTATGTAAGT
1 TATTATGTAAGT
13062695 TA
1 TA
13062697 ACTGTTGTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
9 7 0.13
10 7 0.13
11 10 0.19
12 24 0.45
13 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (12 bp):
TATTATGTAAGT
Found at i:13062771 original size:25 final size:25
Alignment explanation
Indices: 13062739--13062799 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
13062729 TAAGTTATGT
* *
13062739 ATGTAAGTTATGTCAA-TTGTGTATA
1 ATGTAAGTTATG-AAATTTATGTATA
*
13062764 ATGTAAGTTATGAAATTTATGTATT
1 ATGTAAGTTATGAAATTTATGTATA
13062789 ATGTAAGTTAT
1 ATGTAAGTTAT
13062800 TTAAGTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (25 bp):
ATGTAAGTTATGAAATTTATGTATA
Found at i:13062799 original size:9 final size:9
Alignment explanation
Indices: 13062738--13062807 Score: 51
Period size: 9 Copynumber: 8.2 Consensus size: 9
13062728 TTAAGTTATG
13062738 TATGTAAGT
1 TATGTAAGT
13062747 TATGTCAA-T
1 TATGT-AAGT
*
13062756 TGTGT-A-T
1 TATGTAAGT
*
13062763 AATGTAAGT
1 TATGTAAGT
* *
13062772 TATGAAATT
1 TATGTAAGT
13062781 TATGT-A-T
1 TATGTAAGT
13062788 TATGTAAGT
1 TATGTAAGT
*
13062797 TATTTAAGT
1 TATGTAAGT
13062806 TA
1 TA
13062808 AGAAATATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
7 11 0.23
8 3 0.06
9 32 0.67
10 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.47
Consensus pattern (9 bp):
TATGTAAGT
Found at i:13062905 original size:17 final size:16
Alignment explanation
Indices: 13062879--13062913 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
13062869 ATAGAATAAT
13062879 CGATATTTATTAAAAC
1 CGATATTTATTAAAAC
13062895 CGATCATTTATTAAAAC
1 CGAT-ATTTATTAAAAC
13062912 CG
1 CG
13062914 TCTTTTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (16 bp):
CGATATTTATTAAAAC
Found at i:13062999 original size:22 final size:22
Alignment explanation
Indices: 13062974--13063015 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
13062964 ATCCCCAAAA
13062974 TATATATATTAATACGTTAAAT
1 TATATATATTAATACGTTAAAT
*
13062996 TATATATATTAATATGTTAA
1 TATATATATTAATACGTTAA
13063016 GTAACTACCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TATATATATTAATACGTTAAAT
Found at i:13063116 original size:83 final size:86
Alignment explanation
Indices: 13062970--13063158 Score: 312
Period size: 83 Copynumber: 2.2 Consensus size: 86
13062960 TTATATCCCC
13062970 AAAATATATATATTAATACGTTAAATTATATATATTAATATGTTAAGTAACTACCGAAATTAAGA
1 AAAA-ATATATATTAATACGTTAAATTATATATATT-ATA--TT-AGTAACTACCGAAATTAAGA
13063035 CTAATATATTAAATAGCTTATATATT
61 CTAATATATTAAATAGCTTATATATT
13063061 AAAAATATATATTAATACGTTAAATTATATATATT-TA-T-GTAACTACCGAAATTAAGACTAAT
1 AAAAATATATATTAATACGTTAAATTATATATATTATATTAGTAACTACCGAAATTAAGACTAAT
13063123 ATATTAAATAGCTTATATATT
66 ATATTAAATAGCTTATATATT
13063144 AAAAATATATATTAA
1 AAAAATATATATTAA
13063159 AAATATATCT
Statistics
Matches: 98, Mismatches: 0, Indels: 8
0.92 0.00 0.08
Matches are distributed among these distances:
83 60 0.61
85 1 0.01
88 2 0.02
90 31 0.32
91 4 0.04
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (86 bp):
AAAAATATATATTAATACGTTAAATTATATATATTATATTAGTAACTACCGAAATTAAGACTAAT
ATATTAAATAGCTTATATATT
Found at i:13063154 original size:13 final size:13
Alignment explanation
Indices: 13063136--13063166 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
13063126 TTAAATAGCT
13063136 TATATATTAAAAA
1 TATATATTAAAAA
13063149 TATATATTAAAAA
1 TATATATTAAAAA
13063162 TATAT
1 TATAT
13063167 CTATTACTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TATATATTAAAAA
Found at i:13063185 original size:28 final size:29
Alignment explanation
Indices: 13063154--13063231 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
13063144 AAAAATATAT
* *
13063154 ATTAAAAATAT-ATCTATTACTACGTTAA
1 ATTAAAAATATAATATATTAATACGTTAA
* *
13063182 ATT-AAATTTTAATATATTAATACGTTAA
1 ATTAAAAATATAATATATTAATACGTTAA
* * *
13063210 ATTATAGATATCAATACATTAA
1 ATTAAAAATAT-AATATATTAA
13063232 GTTACCCAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
27 5 0.13
28 21 0.55
29 3 0.08
30 9 0.24
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (29 bp):
ATTAAAAATATAATATATTAATACGTTAA
Found at i:13064813 original size:83 final size:86
Alignment explanation
Indices: 13064681--13064843 Score: 217
Period size: 83 Copynumber: 1.9 Consensus size: 86
13064671 TGAAGCTCAC
* * *
13064681 AAACGGCGCCGCATTGGGGAAGTTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
1 AAACGGCACCGCATTAGGGAAATTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
*
13064746 ATTAAATTATTTTCCAGTACAA
66 ATAAAATT-TTTTCCAGTACAA
* * * *
13064768 AAACGGCACCGCA-TAGGGAAATTTA-AT-T-AATCATTGCGGCGTTTTCTTTAAAAACGCCACT
1 AAACGGCACCGCATTAGGGAAATTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
13064829 ATAAAATTTTTTCCA
66 ATAAAATTTTTTCCA
13064844 ACACTGAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 7 0.10
83 36 0.53
84 1 0.01
85 2 0.03
86 10 0.15
87 12 0.18
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (86 bp):
AAACGGCACCGCATTAGGGAAATTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
ATAAAATTTTTTCCAGTACAA
Found at i:13064877 original size:83 final size:82
Alignment explanation
Indices: 13064717--13064922 Score: 223
Period size: 83 Copynumber: 2.5 Consensus size: 82
13064707 TATATAAATA
* * * * **
13064717 ATTGCGGCATTTTCTTAAAAAACGCCACCATTAAATTATTTTCCAGTACAAAAACGGCACCGCAT
1 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATT-TTTTCCAACACAAAAACGGCACCGCAT
* * *
13064782 AGGGAAATTTAATTAATC
65 AGGAAAAGTTAATCAATC
** * * *
13064800 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTTTCCAACACTGAAACGTCGCCTCATT
1 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTTTCCAACACAAAAACGGCACCGCA-T
*
13064865 CGGAAAAGTTAATCAATC
65 AGGAAAAGTTAATCAATC
* ** *
13064883 ATTGCGGCGTTTCCCCTAAAAACGCCACTATCAAATTTTT
1 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTT
13064923 ATTACTATTA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
82 19 0.18
83 84 0.82
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (82 bp):
ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTTTCCAACACAAAAACGGCACCGCATA
GGAAAAGTTAATCAATC
Found at i:13065758 original size:15 final size:15
Alignment explanation
Indices: 13065719--13065752 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
13065709 CCCAAACCCC
13065719 AAACCTCAAA-TCTT
1 AAACCTCAAACTCTT
13065733 AAACCTCAAACTCTT
1 AAACCTCAAACTCTT
13065748 AAACC
1 AAACC
13065753 CTAAACCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (15 bp):
AAACCTCAAACTCTT
Found at i:13065763 original size:21 final size:20
Alignment explanation
Indices: 13065704--13065763 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
13065694 TAAAGCGGCC
*
13065704 TAAACCCCAAACCCCAAACCT
1 TAAACCCTAAA-CCCAAACCT
* * *
13065725 CAAATCTTAAACCTCAAACTCT
1 TAAACCCTAAACC-CAAAC-CT
13065747 TAAACCCTAAACCCAAA
1 TAAACCCTAAACCCAAA
13065764 ACACCAAAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 2 0.07
21 16 0.53
22 12 0.40
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAACCCTAAACCCAAACCT
Found at i:13066044 original size:49 final size:49
Alignment explanation
Indices: 13065950--13066044 Score: 113
Period size: 49 Copynumber: 1.9 Consensus size: 49
13065940 CTACATAGTA
* * *
13065950 AACCCTAAACCCTAAACTGTAATCCAAAAATAATAAACATTATATAATG
1 AACCCTAAACCCTAAACTCTAAACCAAAAATAATAAACATAATATAATG
* *
13065999 AACCCTAATACCCTAAAC-CTAAACCAAATATGATAAAC-TAAATATA
1 AACCCTAA-ACCCTAAACTCTAAACCAAAAATAATAAACAT-AATATA
13066045 TAATAACCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
48 1 0.03
49 29 0.74
50 9 0.23
ACGTcount: A:0.52, C:0.22, G:0.03, T:0.23
Consensus pattern (49 bp):
AACCCTAAACCCTAAACTCTAAACCAAAAATAATAAACATAATATAATG
Found at i:13066297 original size:115 final size:112
Alignment explanation
Indices: 13066074--13066343 Score: 391
Period size: 115 Copynumber: 2.4 Consensus size: 112
13066064 ATGCATGGTT
* *
13066074 AAGACCAAAACGATGCGTTTTGGTTAAGATATTTTGCGACGCTTCTCAAGCGCCGCTAATACTAT
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAGCGCCGCTAATACTAT
* * * * * *
13066139 GCTTTAGCGGTGTTTTCTAGTAAGTGCCACTAATTCTAGTATACGTC
66 GCATTAGCGGCGTTTTCCAGTAAGCGCCACTAATTCTAATATACCTC
* *
13066186 AAGACCAAAACGCCGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCCGCTAATAC
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCT--C-AAGCGCCGCTAATAC
13066251 TATGCATTAGCGGCGTTTTCCCA-TAAGCGCCACTAATTCTAATATACCTC
63 TATGCATTAGCGGCGTTTT-CCAGTAAGCGCCACTAATTCTAATATACCTC
*
13066301 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT
13066344 TGTGCCTTAG
Statistics
Matches: 142, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
112 43 0.30
114 36 0.25
115 61 0.43
116 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (112 bp):
AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAGCGCCGCTAATACTAT
GCATTAGCGGCGTTTTCCAGTAAGCGCCACTAATTCTAATATACCTC
Found at i:13066416 original size:93 final size:92
Alignment explanation
Indices: 13066257--13066527 Score: 420
Period size: 93 Copynumber: 2.9 Consensus size: 92
13066247 ATACTATGCA
*
13066257 TTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
1 TTAGCGGCGTTTTCCCAGAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
13066322 GTTAAGATATTTTGCGGCGCTTTGTGCC
66 GTTAAGATATTTTGCGGCGCTTT-TGCC
*
13066350 TTAGCGGCGTTTTCCCAGAAGTGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
1 TTAGCGGCGTTTTCCCAGAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
* *
13066415 GTTAAGATATTTTGCGGTGC-TTTGCT
66 GTTAAGATATTTTGCGGCGCTTTTGCC
* * * *
13066441 TTAGCGGCGTTTT-CCTGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTT
1 TTAGCGGCGTTTTCCCAG-AAGCGCCACTAATTCTAATATACCTCAAGACC-AAACTCTGCGTTT
*
13066505 TGGTTAAGAGATTTTGCGGCGCT
64 TGGTTAAGATATTTTGCGGCGCT
13066528 ATTCACAAAG
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
90 3 0.02
91 45 0.27
92 34 0.21
93 82 0.50
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (92 bp):
TTAGCGGCGTTTTCCCAGAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
GTTAAGATATTTTGCGGCGCTTTTGCC
Found at i:13066791 original size:114 final size:114
Alignment explanation
Indices: 13066436--13066870 Score: 505
Period size: 114 Copynumber: 3.8 Consensus size: 114
13066426 TTGCGGTGCT
* ** * *
13066436 TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGC
1 TTGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
* * *
13066501 GTTTTGGTTAAGAGATTTTGCGGCGCTATTCACAAAGCGCCGCTAATAC
66 GTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
* * * * * *
13066550 TATGCGTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTAAAGACC-AAACTCTG
1 T-TGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTG
* * * * *
13066614 CGTTTTGGTTAATATATTTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
65 CGTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
** * * *
13066664 TTGCTTTAGCGGCATTTTTTCGTATGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGT
1 TTGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
* ** * *
13066729 ATTTTCCTTAAAAAATTTTGCGGCGCTTTTCACGAAGCCCCGCTAATAC
66 GTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
* * * * *
13066778 TTGCTTTAACGGCATTTTCCCATAAT-TGCCACTAATTCTAGTATACATCAAGACCAAAATGTTG
1 TTGCTTTAGCGGCATTTTCCCAT-ATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTG
* * *
13066842 CGTTTTGGTTAAGAGATTTTGCAGCGCTT
65 CGTTTTGGTTAAAAAATTTTGCGGCGCTT
13066871 GATGGTAAAT
Statistics
Matches: 269, Mismatches: 49, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
113 46 0.17
114 173 0.64
115 50 0.19
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (114 bp):
TTGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
GTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
Found at i:13066846 original size:228 final size:228
Alignment explanation
Indices: 13066436--13066853 Score: 588
Period size: 228 Copynumber: 1.8 Consensus size: 228
13066426 TTGCGGTGCT
* *
13066436 TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGC
1 TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGC
* ** * * * * *
13066501 GTTTTGGTTAAGAGATTTTGCGGCGCTATTCACAAAGCGCCGCTAATACTATGCGTTAGCGGCGT
66 ATTTTCCTTAAAAAATTTTGCGGCGCTATTCACAAAGCCCCGCTAATACTATGCGTTAACGGCAT
* *
13066566 TTTCCCATAAGCGCCACTAATTCTAATATACCTAAAGACCAAACTCTGCGTTTTGGTTAATATAT
131 TTTCCCATAAGCGCCACTAATTCTAATATACATAAAGACCAAAATCTGCGTTTTGGTTAATATAT
13066631 TTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
196 TTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
* * *
13066664 TTGCTTTAGCGGCATTTT-TTCGTATGCGCCACTAATTCTAATATACATCAAGACCAAAACGATG
1 TTGCTTTAGCGGCGTTTTCCT-GTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATG
* * * *
13066728 TATTTTCCTTAAAAAATTTTGCGGCGCTTTTCACGAAGCCCCGCTAATACT-TGCTTTAACGGCA
65 CATTTTCCTTAAAAAATTTTGCGGCGCTATTCACAAAGCCCCGCTAATACTATGCGTTAACGGCA
** * * *
13066792 TTTTCCCATAATTGCCACTAATTCTAGTATACATCAAGACCAAAATGTTGCGTTTTGGTTAA
130 TTTTCCCATAAGCGCCACTAATTCTAATATACATAAAGACCAAAAT-CTGCGTTTTGGTTAA
13066854 GAGATTTTGC
Statistics
Matches: 164, Mismatches: 24, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
227 51 0.31
228 113 0.69
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (228 bp):
TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGC
ATTTTCCTTAAAAAATTTTGCGGCGCTATTCACAAAGCCCCGCTAATACTATGCGTTAACGGCAT
TTTCCCATAAGCGCCACTAATTCTAATATACATAAAGACCAAAATCTGCGTTTTGGTTAATATAT
TTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
Found at i:13072985 original size:13 final size:13
Alignment explanation
Indices: 13072964--13072995 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13072954 TTTGATTAAT
*
13072964 TAATGTAATATAA
1 TAATATAATATAA
13072977 TAATATAATATAA
1 TAATATAATATAA
13072990 TAATAT
1 TAATAT
13072996 TTTAATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
TAATATAATATAA
Done.