Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 43 of 228
Found at i:13074866 original size:14 final size:14
Alignment explanation
Indices: 13074849--13074878 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13074839 ATTTTGCTAG
*
13074849 TTTATTTTTATTAT
1 TTTATTGTTATTAT
13074863 TTTATTGTTATTAT
1 TTTATTGTTATTAT
13074877 TT
1 TT
13074879 GGATATTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATTGTTATTAT
Found at i:13080050 original size:7 final size:7
Alignment explanation
Indices: 13080038--13080064 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
13080028 TACAAAATTT
13080038 TTCTTTG
1 TTCTTTG
13080045 TTCTTTG
1 TTCTTTG
13080052 TTCTTTG
1 TTCTTTG
13080059 TTCTTT
1 TTCTTT
13080065 TTGCTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.11, T:0.74
Consensus pattern (7 bp):
TTCTTTG
Found at i:13082558 original size:21 final size:21
Alignment explanation
Indices: 13082532--13082575 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
13082522 TGCGTGTATG
13082532 CTCACTAAATTAATTAAGCAA
1 CTCACTAAATTAATTAAGCAA
*
13082553 CTCACTCAATTAATTAAGCAA
1 CTCACTAAATTAATTAAGCAA
13082574 CT
1 CT
13082576 GAATCTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.30
Consensus pattern (21 bp):
CTCACTAAATTAATTAAGCAA
Found at i:13086527 original size:34 final size:35
Alignment explanation
Indices: 13086469--13086535 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
13086459 CAAACACCAG
13086469 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
13086504 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
13086536 TATTTTACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:13090715 original size:106 final size:105
Alignment explanation
Indices: 13090447--13090761 Score: 396
Period size: 106 Copynumber: 3.0 Consensus size: 105
13090437 TTTTCTAAAT
* *
13090447 AAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGATGGGTTTCGATTTCTC
* * * *
13090512 GTTTGACCAAAATAGCCAAATACCCATTTTAAACTTTCAAAT
66 GTTTGA-CAAAATAGCCAAATATCC-TTTTAAATTTTAAAAC
* * * * * *
13090554 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGAGTACTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGATGGGTTTCGATTTCTC
* * *
13090619 GTTTGGCAAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACAAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * * * *
13090660 GAGGCAATGTTTTGCGTTTGGAAATTCGAGAGAATGTGCCCTAACGTGATAGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGATGGGTTTCGATTTCTC
* * *
13090725 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAA
13090762 TCCATGTCGT
Statistics
Matches: 176, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
105 13 0.07
106 100 0.57
107 63 0.36
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (105 bp):
AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGATGGGTTTCGATTTCTC
GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:13092548 original size:106 final size:104
Alignment explanation
Indices: 13092336--13092655 Score: 406
Period size: 106 Copynumber: 3.0 Consensus size: 104
13092326 ACGACATGGA
* * *
13092336 TTAAAATTTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGC
1 TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAG-AATCGAAACCCAGCACGTTAGGGC
* * * *
13092401 ACATTCTCTCGAATTTCCAAACGCAAAACATTGCCTCATT
65 ACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* * * *
13092441 TTAAAATTTCAAAAGGATATTCGACTATTTGGCCAAACGAGTAATCGAAACCCAACACGTTAGGG
1 TTAAAATTT-AAAAGGATATTTGGCTATTTGGTCAAACGAG-AATCGAAACCCAGCACGTTAGGG
* * * *
13092506 CACGTTTTCTCAAATTTCCAAACGCGAAATATGGTCTTATT
64 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* *
13092547 TTGAAAGTTTAAAATGGGTATTTGGCTATTTTGGTCAAACGAGATATCGAAACCCAGCACGTTAG
1 TT-AAAATTTAAAA-GGATATTTGGCTA-TTTGGTCAAACGAGA-ATCGAAACCCAGCACGTTAG
* *
13092612 GGCACGTTTTCTCGATTTTCCAAACGTAAAATATTGCCTTATT
62 GGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
13092655 T
1 T
13092656 AGAAAAATTC
Statistics
Matches: 182, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
105 9 0.05
106 86 0.47
107 17 0.09
108 70 0.38
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (104 bp):
TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAATCGAAACCCAGCACGTTAGGGCA
CGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
Found at i:13096766 original size:18 final size:18
Alignment explanation
Indices: 13096729--13096766 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
13096719 GTGTGCATTG
*
13096729 TTCTTTGTTTTTTTTATT
1 TTCTTTGTTTTTGTTATT
13096747 TTCTTTGTTATTTGTT-TT
1 TTCTTTGTT-TTTGTTATT
13096765 TT
1 TT
13096767 ACTCTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.05, C:0.05, G:0.08, T:0.82
Consensus pattern (18 bp):
TTCTTTGTTTTTGTTATT
Found at i:13097471 original size:29 final size:28
Alignment explanation
Indices: 13097438--13097502 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
13097428 TAGTCCCTTT
* * *
13097438 TATTTTATTTTTCTTTCAATTTCGCCCTA
1 TATTTTAGTTTTATTTCAATTTAGCCC-A
* *
13097467 TATTTTGGTTTTATTTCGATTTAGCCCA
1 TATTTTAGTTTTATTTCAATTTAGCCCA
13097495 TATTTTAG
1 TATTTTAG
13097503 CGATTTTATG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.57
Consensus pattern (28 bp):
TATTTTAGTTTTATTTCAATTTAGCCCA
Found at i:13097521 original size:3 final size:3
Alignment explanation
Indices: 13097513--13097584 Score: 67
Period size: 3 Copynumber: 24.3 Consensus size: 3
13097503 CGATTTTATG
* * *
13097513 TTA TTA TTA TTA TTA TT- TTAA ATA TTA TTA TTA GT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
** *
13097557 TTA TTA TGG TTA TTA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
13097585 CGTTAGTATT
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 3 0.06
3 50 0.93
4 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:13110290 original size:46 final size:44
Alignment explanation
Indices: 13110240--13110333 Score: 109
Period size: 44 Copynumber: 2.1 Consensus size: 44
13110230 TCCTGTATCG
*
13110240 ACAGCGAAGTAGATCGAAGAATT-TCAGATCTTATCTCCCTGAGATT
1 ACAGCGAAGTAGATCGAAG-ATTGT-A-ATCCTATCTCCCTGAGATT
* * * *
13110286 ACAGCGGAGTAGATTGAAGCTTGTAATCCTATCTCCTTGAGATT
1 ACAGCGAAGTAGATCGAAGATTGTAATCCTATCTCCCTGAGATT
13110330 ACAG
1 ACAG
13110334 TGGACCGGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 21 0.50
45 3 0.07
46 18 0.43
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
ACAGCGAAGTAGATCGAAGATTGTAATCCTATCTCCCTGAGATT
Found at i:13110461 original size:44 final size:43
Alignment explanation
Indices: 13110271--13110467 Score: 139
Period size: 44 Copynumber: 4.6 Consensus size: 43
13110261 TTTCAGATCT
* *
13110271 TATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTTGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-AATCC
* *** * * * * *
13110315 TATCTCCTTGAGATTACAGTGGACCGGATTAAAACCAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGTAGATT-GAAGCTAGAATCC
* * * * * * *
13110359 TATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG-GTCT
1 TATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTAGAATCC
* * * *
13110400 TATTTCCTTGTGATTACAGTGGAGTACATTGAAGCTAGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-AATCC
13110444 TATCTCCCTGAGATTACAGTGGAG
1 TATCTCCCTGAGATTACAGTGGAG
13110468 CGGATTAAAA
Statistics
Matches: 111, Mismatches: 36, Indels: 12
0.70 0.23 0.08
Matches are distributed among these distances:
41 27 0.24
42 5 0.05
43 3 0.03
44 72 0.65
45 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (43 bp):
TATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGAATCC
Found at i:13110562 original size:129 final size:129
Alignment explanation
Indices: 13110263--13110598 Score: 449
Period size: 129 Copynumber: 2.6 Consensus size: 129
13110253 TCGAAGAATT
* * * * *
13110263 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTTGTAATCCTATCTCCTTGAGA
1 TCAGGTCTTATTTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
13110328 TTACAGTGGACCGGATTAAAACCAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA
66 TTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA
* * *
13110392 TCAGGTCTTATTTCCTTGTGATTACAGTGGAGTACATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGGTCTTATTTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
** **
13110457 TTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA
* * * * *
13110521 TCAGGTCTTATTTCCCTGAGATTACAGTGGAATAGACTGAAG-AATTTCAGATCTTATCTCCCTG
1 TCAGGTCTTATTTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA-GT-A-ATCCTATCTCCCTG
*
13110585 AGATTACAGCGGAG
63 AGATTACAGTGGAG
13110599 TAGATTGAAG
Statistics
Matches: 180, Mismatches: 24, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
128 1 0.01
129 152 0.84
130 1 0.01
131 26 0.14
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (129 bp):
TCAGGTCTTATTTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAACCAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA
Found at i:13110593 original size:46 final size:46
Alignment explanation
Indices: 13110521--13110608 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
13110511 GTAGATCGTG
* * *
13110521 TCAGGTCTTATTTCCCTGAGATTACAGTGGAATAGACTGAAGAATT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAGAATT
* *
13110567 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAG
13110609 CCGATAATCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (46 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAATAGACTGAAGAATT
Found at i:13112031 original size:29 final size:28
Alignment explanation
Indices: 13111998--13112063 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
13111988 TAGTCCCTTT
* * *
13111998 TATTTTATTTTTCTTTCAATTTCGCCCTA
1 TATTTTAGTTTTATTTCAATTTAGCCC-A
* *
13112027 TATTTTGGTTTTATTTCGATTTAGCCCA
1 TATTTTAGTTTTATTTCAATTTAGCCCA
13112055 TATTTTAGT
1 TATTTTAGT
13112064 AATTTTATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.58
Consensus pattern (28 bp):
TATTTTAGTTTTATTTCAATTTAGCCCA
Found at i:13112081 original size:3 final size:3
Alignment explanation
Indices: 13112073--13112150 Score: 79
Period size: 3 Copynumber: 26.3 Consensus size: 3
13112063 TAATTTTATG
* *
13112073 TTA TTA TTA TTA TTA TTA TTA TT- TTAA ATA TTA TTA TTA GT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA
* ** *
13112117 CTA TTA TTA TTA TGG TTA TTA TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
13112151 CGTTAGTATT
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.05
3 56 0.93
4 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:13115190 original size:4 final size:4
Alignment explanation
Indices: 13115181--13115205 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13115171 TTAAAATATG
13115181 TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA T
13115206 TTTTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:13115824 original size:106 final size:105
Alignment explanation
Indices: 13115555--13115870 Score: 398
Period size: 106 Copynumber: 3.0 Consensus size: 105
13115545 TTTTCTAAAT
* *
13115555 AAGGCAATATTTTACGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13115620 GTTTGACCAAAATAGCCAAATACCCTTTTTAAACTTTCAAAAT
66 GTTTGA-CAAAATAGCCAAATATCC-TTTTAAA-TTTTAAAAC
* * * * * *
13115663 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGAGTACTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13115728 GTTTGGCAAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACAAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * * * *
13115769 GAGGCAATGTTTTGCGTTTGGAAATTCGAGAGAATGTGCCCTAACGTGCTAGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13115834 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAA
13115871 TCCATGTCGT
Statistics
Matches: 176, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
105 9 0.05
106 87 0.49
107 18 0.10
108 62 0.35
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (105 bp):
AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:13117661 original size:106 final size:105
Alignment explanation
Indices: 13117449--13117768 Score: 433
Period size: 106 Copynumber: 3.0 Consensus size: 105
13117439 ACGACATGGA
* * *
13117449 TTAAAATTTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGC
1 TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGC
* * * *
13117514 ACATTCTCTCGAATTTCCAAACGCAAAACATTGCCTCATT
66 ACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* * * * *
13117554 TTAAAATTTCAAAAGGATATTCGACTATTTGGCCAAACGAGTAATCGAAACCCAACACGTTAGGG
1 TTAAAATTT-AAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGG
* * *
13117619 CACGTTTTCTCGAATTTCCAAACGCGAAATATGGTCTTATT
65 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* *
13117660 TTGAAAGTTTAAAATGGGTATTTGGCTATTTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAG
1 TT-AAAATTTAAAA-GGATATTTGGCTA-TTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAG
* *
13117725 GGCACGTTTTCTCGATTTTCCAAACGTAAAATATTGCCTTATT
63 GGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
13117768 T
1 T
13117769 AGAAAAATTC
Statistics
Matches: 184, Mismatches: 27, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
105 9 0.05
106 87 0.47
107 16 0.09
108 72 0.39
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (105 bp):
TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGC
ACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
Found at i:13120140 original size:73 final size:73
Alignment explanation
Indices: 13120021--13120206 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
13120011 ACAACTTGAC
13120021 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
13120086 CACTAACA
66 CACTAACA
*
13120094 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
13120159 CACTAACA
66 CACTAACA
*
13120167 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
13120207 AATAATAATA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:13124537 original size:73 final size:73
Alignment explanation
Indices: 13124450--13124708 Score: 482
Period size: 73 Copynumber: 3.5 Consensus size: 73
13124440 ACAACTTGAC
*
13124450 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCTACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
13124515 CACTAACA
66 CACTAACA
*
13124523 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
13124588 CACTAACA
66 CACTAACA
*
13124596 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
13124661 CACTAACA
66 CACTAACA
*
13124669 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
13124709 AATAATAATA
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 182 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:13129447 original size:26 final size:24
Alignment explanation
Indices: 13129399--13129446 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13129389 ACATATGCAC
13129399 ATACTTACATTTTTATTTTATATA
1 ATACTTACATTTTTATTTTATATA
*
13129423 ATACTTACAGTTTTT-TTCTATATA
1 ATACTTACA-TTTTTATTTTATATA
13129447 TGTATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.56
Consensus pattern (24 bp):
ATACTTACATTTTTATTTTATATA
Found at i:13141286 original size:44 final size:44
Alignment explanation
Indices: 13141149--13141811 Score: 578
Period size: 44 Copynumber: 15.1 Consensus size: 44
13141139 GTCAAAGGAA
* * * *
13141149 CAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG-ATG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
* *
13141192 CAGATCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAG-ATG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
* *
13141235 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* * *
13141280 CA-ATCTTGTCTTCATGTATTAGCGT--GAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATT-G-GTAGGAAGTAGATCGAAGAAAG
* * * * *
13141323 CAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATC-AAG-ATG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
* * *
13141365 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* * * * *
13141410 CAAATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* * * * * *
13141454 CAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAG-ATG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
* * *
13141497 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* * * **
13141542 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* ** * * *
13141586 CAGATCCTACCTTCCTATATGGGTAGGAAGTGGATCGAAG-ATG
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
* * *
13141629 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* * * * **
13141674 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAAATCGAAGGTAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
* * * * * *
13141718 CAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATA-
1 CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
* * * *
13141761 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAAATCGAAGAAAG
1 CAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAG
13141806 CAGATC
1 CAGATC
13141812 GACGATGGCG
Statistics
Matches: 491, Mismatches: 110, Indels: 36
0.77 0.17 0.06
Matches are distributed among these distances:
42 24 0.05
43 160 0.33
44 226 0.46
45 79 0.16
46 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
CAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAG
Found at i:13141561 original size:132 final size:132
Alignment explanation
Indices: 13141175--13141811 Score: 1064
Period size: 132 Copynumber: 4.8 Consensus size: 132
13141165 ATATTGGTAG
* * *
13141175 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* *
13141239 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA-ATCTTGTCTTCATGTATTAGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
13141303 GT
131 GT
*
13141305 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATC-AAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
13141369 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAAATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
13141434 GT
131 GT
* *
13141436 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
13141501 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
13141566 GT
131 GT
* * *
13141568 GAAGTAGATCGAAGGTAGCAGATCCTACCTTCCTATATGGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
13141633 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
13141698 GT
131 GT
* * * * *
13141700 GAAGTAAATCGAAGGTAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * * *
13141765 TCTTGTCTTCCCATACTGGTGGTGAAGTAAATCGAAGAAAGCAGATC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
13141812 GACGATGGCG
Statistics
Matches: 482, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
130 67 0.14
131 110 0.23
132 305 0.63
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:13143942 original size:23 final size:24
Alignment explanation
Indices: 13143897--13143943 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13143887 ACATATGCAC
13143897 ATACTTACATCTTTATTTTATATA
1 ATACTTACATCTTTATTTTATATA
13143921 ATACTTACAGT-TTT-TTTTATATA
1 ATACTTACA-TCTTTATTTTATATA
13143944 TGTATATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.41
24 12 0.55
25 1 0.05
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.55
Consensus pattern (24 bp):
ATACTTACATCTTTATTTTATATA
Found at i:13145862 original size:106 final size:105
Alignment explanation
Indices: 13145593--13145908 Score: 398
Period size: 106 Copynumber: 3.0 Consensus size: 105
13145583 TTTTCTAAAT
*
13145593 AAGGCAATATTTTGCGTTTAGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13145658 GTTTGACCAAAATAGCCAAATACCCTTTTTAAACTTTCAAAAT
66 GTTTGA-CAAAATAGCCAAATATCC-TTTTAAA-TTTTAAAAC
* * * * * * *
13145701 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGAGTACTC
1 AAGGCAATATTTTGCGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13145766 GTTTGGCAAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACAAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * * * *
13145807 GAGGCAATGTTTTGCGTTTAGAAATTCGAGAGAATGTGCCCTAACGTGCTAGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13145872 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAA
13145909 TCCATGTCGT
Statistics
Matches: 175, Mismatches: 32, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
105 9 0.05
106 86 0.49
107 18 0.10
108 62 0.35
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (105 bp):
AAGGCAATATTTTGCGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:13147698 original size:106 final size:105
Alignment explanation
Indices: 13147486--13147805 Score: 426
Period size: 106 Copynumber: 3.0 Consensus size: 105
13147476 ACGACATGGA
* * *
13147486 TTAAAATTTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGC
1 TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGC
* * * * *
13147551 ACATTCTCTCGAATTTCCAAACGCAAAACATTGCCTCATT
66 ACGTTTTCTCGAATTTCCAAACGTAAAATATTGCCTTATT
* * * * *
13147591 TTAAAATTTCAAAAGGATATTCGACTATTTGGCCAAACGAGTAATCGAAACCCAACACGTTAGGG
1 TTAAAATTT-AAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGG
* * *
13147656 CACGTTTTCTCGAATTTCCAAACGTGAAATATGGTCTTATT
65 CACGTTTTCTCGAATTTCCAAACGTAAAATATTGCCTTATT
* *
13147697 TTGAAAGTTTAAAATGAGTATTTGGCTATTTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAG
1 TT-AAAATTTAAAAGGA-TATTTGGCTA-TTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAG
13147762 GGCACGTTTTCTC-AATTTTCCAAACGTAAAATATTGCCTTATT
63 GGCACGTTTTCTCGAA-TTTCCAAACGTAAAATATTGCCTTATT
13147805 T
1 T
13147806 AGAAAAATTC
Statistics
Matches: 184, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
105 9 0.05
106 88 0.48
107 16 0.09
108 71 0.39
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (105 bp):
TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGC
ACGTTTTCTCGAATTTCCAAACGTAAAATATTGCCTTATT
Found at i:13151892 original size:18 final size:17
Alignment explanation
Indices: 13151859--13151897 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
13151849 TTGTATAAAT
13151859 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
13151877 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
13151894 TGTG
1 TGTG
13151898 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:13152150 original size:23 final size:23
Alignment explanation
Indices: 13152123--13152220 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
13152113 AGTGTTATTG
13152123 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
13152146 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
13152169 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
13152191 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
13152214 ATCAGTG
1 ATCAGTG
13152221 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:13152189 original size:45 final size:45
Alignment explanation
Indices: 13152125--13152213 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
13152115 TGTTATTGAT
* *
13152125 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
13152170 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
13152214 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:13155756 original size:4 final size:4
Alignment explanation
Indices: 13155747--13155771 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13155737 TTAAAATATG
13155747 TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA T
13155772 TTTTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:13156394 original size:106 final size:105
Alignment explanation
Indices: 13156122--13156437 Score: 398
Period size: 106 Copynumber: 3.0 Consensus size: 105
13156112 TTTTCTAAAT
*
13156122 AAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13156187 GTTTGACCAAAATAGCCAAATACCCTTTTTAAACTTTCAAAAT
66 GTTTGA-CAAAATAGCCAAATATCC-TTTTAAA-TTTTAAAAC
* * * * * *
13156230 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGAGTACTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13156295 GTTTGGCAAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACAAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * * * * *
13156336 GAGGCAATGTTTTGCGTTTGGAAATTCGAGAGAATGTGCCCTAACGTGCTAGGCTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13156401 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAA
13156438 TCCATGTCGT
Statistics
Matches: 176, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
105 9 0.05
106 86 0.49
107 18 0.10
108 63 0.36
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (105 bp):
AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:13158225 original size:106 final size:105
Alignment explanation
Indices: 13158016--13158335 Score: 435
Period size: 106 Copynumber: 3.0 Consensus size: 105
13158006 ACGACATGGA
* * *
13158016 TTAAAATTTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGC
1 TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGC
* * *
13158081 ACATTCTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
66 ACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* * * * *
13158121 TTAAAATTTCAAAAGGATATTCGACTATTTGGCCAAACGAGTAATCGAAACCCAACACGTTAGGG
1 TTAAAATTT-AAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGG
* * *
13158186 CACGTTTTCTCGAATTTCCAAACGCGAAATATGGTCTTATT
65 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* *
13158227 TTGAAAGTTTAAAATGAGTATTTGGCTATTTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAG
1 TT-AAAATTTAAAAGGA-TATTTGGCTA-TTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAG
*
13158292 GGCACGTTTTCTC-AATTTTCCAAACGTAAAATATTGCCTTATT
63 GGCACGTTTTCTCGAA-TTTCCAAACGCAAAATATTGCCTTATT
13158335 T
1 T
13158336 AGAAAAATTC
Statistics
Matches: 185, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
105 9 0.05
106 90 0.49
107 16 0.09
108 70 0.38
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (105 bp):
TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGC
ACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
Found at i:13161023 original size:22 final size:22
Alignment explanation
Indices: 13160992--13161035 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13160982 TACACTAAAA
* **
13160992 TAGGCTTTTAGCGGCGTTTTTT
1 TAGGCCTTTAGCAACGTTTTTT
13161014 TAGGCCTTTAGCAACGTTTTTT
1 TAGGCCTTTAGCAACGTTTTTT
13161036 AGTGCAGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.48
Consensus pattern (22 bp):
TAGGCCTTTAGCAACGTTTTTT
Found at i:13161149 original size:43 final size:43
Alignment explanation
Indices: 13161101--13161369 Score: 358
Period size: 43 Copynumber: 6.3 Consensus size: 43
13161091 TGAAAAAAAT
* *
13161101 GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
13161144 GCCGCTGAAGAACATGACCTTTAGCGGCGCTTTTTCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
13161187 GCCGCTAAAGAACATGATCTTTAGTGACGCTGTACCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
*
13161230 ACCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * **
13161273 GCCGCTAAAGAACTTGACCTTTAGCGACGCTTTTCCTATTAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
13161316 TCCGCTAAAGAACCTGACCTTTAGCGGCACTTTTCCTAAAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
13161359 GCCGCTAAAGA
1 GCCGCTAAAGA
13161370 TCATAAAAAA
Statistics
Matches: 196, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 196 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:13164891 original size:24 final size:24
Alignment explanation
Indices: 13164844--13164915 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
13164834 TCAGTGGAGG
* *
13164844 CAAAAAAAAACCAAAAACACAAAAA
1 CAAAAAAAAAAC-AAAACAAAAAAA
* * *
13164869 CAAAAAACAAACGAGACAAAAAAA
1 CAAAAAAAAAACAAAACAAAAAAA
*
13164893 TAAAAAAAAAACAAAACAAAAAA
1 CAAAAAAAAAACAAAACAAAAAA
13164916 CCTCTACCGG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 28 0.74
25 10 0.26
ACGTcount: A:0.81, C:0.15, G:0.03, T:0.01
Consensus pattern (24 bp):
CAAAAAAAAAACAAAACAAAAAAA
Found at i:13165382 original size:18 final size:17
Alignment explanation
Indices: 13165352--13165385 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13165342 TCACTCGAAA
*
13165352 AAAAGAAATGAAAAGAC
1 AAAAGAAAAGAAAAGAC
13165369 AAAAGAAAAAGAAAAGA
1 AAAAG-AAAAGAAAAGA
13165386 AGAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAGAAAAGAC
Found at i:13165396 original size:24 final size:23
Alignment explanation
Indices: 13165351--13165403 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
13165341 TTCACTCGAA
* * *
13165351 AAAAAGAAATGAAAAGACAAAAG
1 AAAAAGAAAAGAAAACAAAAAAG
13165374 AAAAAGAAAAGAAGAACAAAAAAG
1 AAAAAGAAAAGAA-AACAAAAAAG
13165398 AAAAAG
1 AAAAAG
13165404 GAGAGACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.77, C:0.04, G:0.17, T:0.02
Consensus pattern (23 bp):
AAAAAGAAAAGAAAACAAAAAAG
Found at i:13166354 original size:24 final size:24
Alignment explanation
Indices: 13166301--13166360 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
13166291 TTATGTCCCT
*
13166301 AAATTACAGTGGACTGAACCTTGA
1 AAATTACAGTGGACTGAACCTTAA
* * * *
13166325 AGATTATAGTGGATTGAACTTTAA
1 AAATTACAGTGGACTGAACCTTAA
13166349 AAATTACAGTGG
1 AAATTACAGTGG
13166361 GGCAGTTCGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (24 bp):
AAATTACAGTGGACTGAACCTTAA
Found at i:13166830 original size:100 final size:100
Alignment explanation
Indices: 13166649--13167317 Score: 895
Period size: 100 Copynumber: 6.7 Consensus size: 100
13166639 TTCCCTAACA
* *
13166649 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCTGACATTGCAATTTAAGAA-
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAA-AAG
* * *
13166712 ATTGAAGCCACAACGGCGAATCTCATTTCCCTGGC-
65 ATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * * *
13166747 AGTACAGTGGAGCAGATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGCAATTTAAAAG
1 A-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAG
* * *
13166812 ATTGAAGCCACAACGGCGAATCTTACTTCCCAGGTG
65 ATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * *
13166848 ATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTT-ATTCCCCGACATTACAATTTAAAAGA
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
**
13166912 TTGAAGCCGCAACGGCGAATCTTACTTCTATGGCG
66 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* *
13166947 ATGCAGTGGAGCATATTAAAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAATTTAAAAGA
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
*
13167012 TTGAAGCCGCAACGGCGAATCTTACTTCCATGGCG
66 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * *
13167047 ATGCAGTGGAGCAGATTAAAGCTAAAATGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
* * *
13167112 TTAAAGCCGCAACGACAAATCTTACTTCCCTGGCG
66 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * *
13167147 ATGCAGTGGATCAGATTGAAA-CTAAAACGGTGAATCTTG-TTCCCCGACATTGCAATTAAAAAG
1 ATGCAGTGGAGCAGATT-AAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAG
* *
13167210 ATTGAAGCTGCAACGGCGAATCTTACTTCCCTGG-T
65 ATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * *
13167245 AGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATC-TGGTTCCCCGACATTGCAGTTTAAAAA
1 A-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTT-AAAA
13167309 GATTGAAGC
64 GATTGAAGC
13167318 TATACACCAC
Statistics
Matches: 508, Mismatches: 53, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
98 6 0.01
99 221 0.44
100 277 0.55
101 4 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (100 bp):
ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
Found at i:13166991 original size:199 final size:199
Alignment explanation
Indices: 13166649--13167317 Score: 927
Period size: 199 Copynumber: 3.4 Consensus size: 199
13166639 TTCCCTAACA
*
13166649 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCTGACATTGCAATTTAAGAA-A
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTTAA-AAGA
* * * * *
13166713 TTGAAGCCACAACGGCGAATCTCATTTCCCTGGC-AGTACAGTGGAGCAGATTAAAGCTACGACG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA-TGCAGTGGAGCAGATTAAAGCTACAACG
* * * *
13166777 GCAAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC
129 GCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCC
13166842 CAGGTG
194 CAGGTG
* * *
13166848 ATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTACAATTTAAAAGAT
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTTAAAAGAT
** *
13166913 TGAAGCCGCAACGGCGAATCTTACTTCTATGGCGATGCAGTGGAGCATATTAAAGCTACAACGGC
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGC
*
13166978 GAATCTAGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTT-CCA
131 GAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCA
*
13167042 TGGCG
196 -GGTG
* * * *
13167047 ATGCAGTGGAGCAGATTAAAGCTAAAATGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAATTTAAAAGA
* * * * *
13167112 TTAAAGCCGCAACGACAAATCTTACTTCCCTGGCGATGCAGTGGATCAGATTGAAA-CTAAAACG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATGCAGTGGAGCAGATT-AAAGCTACAACG
* * *
13167176 GTGAATCTTG-TTCCCCGACATTGCAATTAAAAAGATTGAAGCTGCAACGGCGAATCTTACTTCC
129 GCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCC
*
13167240 CTGGT-
194 CAGGTG
* * *
13167245 AGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTGGTTCCCCGACATTGCAGTTTAAAAAG
1 A-TGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTT-AAAAG
13167310 ATTGAAGC
64 ATTGAAGC
13167318 TATACACCAC
Statistics
Matches: 415, Mismatches: 47, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
198 23 0.06
199 303 0.73
200 86 0.21
201 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (199 bp):
ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTTAAAAGAT
TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGC
GAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCA
GGTG
Found at i:13167232 original size:299 final size:296
Alignment explanation
Indices: 13166649--13167317 Score: 946
Period size: 299 Copynumber: 2.2 Consensus size: 296
13166639 TTCCCTAACA
*
13166649 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCTGACATTGCAATTTAAGAA-A
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATC-TGTTCCCCGACATTGCAATTTAA-AAGA
* * **
13166713 TTGAAGCCACAACGGCGAATCTCATTTCCCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGG
64 TTGAAGCCACAACGGCGAATCTCACTTCCATGGCAGTACAGTGGAGCAGATTAAAGCTAAAACGG
* * * * * *
13166778 CAAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC
129 CAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGACAAATCTTACTTCCC
* * * *
13166843 AGGTGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTACAATTTAA
194 AGGCGATGCAGTGGATCAGATTGAAACTAAAACGGCGAATCTTATTCCCCGACATTACAATTAAA
*
13166908 AAGATTGAAGCCGCAACGGCGAATCTTACTTCTATGGCG
259 AAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGG-G
* *
13166947 ATGCAGTGGAGCATATTAAAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAATTTAAAAGA
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCT-G-TTCCCCGACATTGCAATTTAAAAGA
* * * *
13167012 TTGAAGCCGCAACGGCGAATCTTACTTCCATGGC-GATGCAGTGGAGCAGATTAAAGCTAAAATG
64 TTGAAGCCACAACGGCGAATCTCACTTCCATGGCAG-TACAGTGGAGCAGATTAAAGCTAAAACG
* *
13167076 GCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCGCAACGACAAATCTTACTTCC
128 GCAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGACAAATCTTACTTCC
* * * *
13167141 CTGGCGATGCAGTGGATCAGATTGAAACTAAAACGGTGAATCTTGTTCCCCGACATTGCAATTAA
193 CAGGCGATGCAGTGGATCAGATTGAAACTAAAACGGCGAATCTTATTCCCCGACATTACAATTAA
* * *
13167206 AAAGATTGAAGCTGCAACGGCGAATCTTACTTCCCTGGT
258 AAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGG
* *
13167245 AGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTGGTTCCCCGACATTGCAGTTTAAAAAG
1 A-TGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCT-GTTCCCCGACATTGCAATTT-AAAAG
13167310 ATTGAAGC
63 ATTGAAGC
13167318 TATACACCAC
Statistics
Matches: 329, Mismatches: 36, Indels: 11
0.88 0.10 0.03
Matches are distributed among these distances:
297 1 0.00
298 57 0.17
299 271 0.82
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (296 bp):
ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTGTTCCCCGACATTGCAATTTAAAAGATT
GAAGCCACAACGGCGAATCTCACTTCCATGGCAGTACAGTGGAGCAGATTAAAGCTAAAACGGCA
AATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGACAAATCTTACTTCCCAG
GCGATGCAGTGGATCAGATTGAAACTAAAACGGCGAATCTTATTCCCCGACATTACAATTAAAAA
GATTGAAGCCGCAACGGCGAATCTTACTTCCATGGG
Found at i:13167386 original size:40 final size:40
Alignment explanation
Indices: 13167331--13167814 Score: 535
Period size: 40 Copynumber: 11.8 Consensus size: 40
13167321 ACACCACAGA
*
13167331 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* * * *
13167371 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATAGAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA-AG
* *
13167412 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCTCCTCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* *
13167453 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
*
13167494 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* * *
13167535 TCTTATATCCCTAAGCAGTAGTGGAGCAGA-CAGAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
13167576 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
13167617 TCTTATCTCCCTAAGTAGT-GATGGAGCAGATCGCATCAAG
1 TCTTATCTCCCTAAGCAGTAG-TGGAGCAGATCGCATCAAG
* *
13167657 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAAAAATCAA-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-----CATCAAG
* ** * ** *** *
13167701 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGCATCA-AG
13167744 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
13167785 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
13167815 CAGAAAAAAA
Statistics
Matches: 376, Mismatches: 46, Indels: 44
0.81 0.10 0.09
Matches are distributed among these distances:
39 3 0.01
40 194 0.52
41 19 0.05
42 103 0.27
43 15 0.04
44 22 0.06
45 18 0.05
46 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:13167460 original size:82 final size:82
Alignment explanation
Indices: 13167323--13167819 Score: 707
Period size: 82 Copynumber: 6.0 Consensus size: 82
13167313 GAAGCTATAC
*
13167323 ACCACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
1 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
*
13167388 GTAGTGGAGCAGATAGA
66 GTAGTGGAGCAGACAGA
* * *
13167405 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCTCCTCAAGTCTTATCTCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
13167470 GTAGTGGAGCAGACAGA
66 GTAGTGGAGCAGACAGA
* * *
13167487 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATATCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
13167552 GTAGTGGAGCAGACAGA
66 GTAGTGGAGCAGACAGA
13167569 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
1 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
*
13167634 GT-GATGGAGCAGATC-GC
66 GTAG-TGGAGCAGA-CAGA
* * * *
13167651 ATCA-AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAAAAATCAA-TCCTATCTCCCT
1 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-----CATCAAGTCTTATCTCCCT
* * ** * *
13167713 GAAGTTGCAGTGGAGTGGATTAAA
61 -AAGTAGTAGTGGAGCAGA-CAGA
13167737 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
1 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
13167802 GTAGTGGAGCAGACAGA
66 GTAGTGGAGCAGACAGA
13167819 A
1 A
13167820 AAAAAAACCA
Statistics
Matches: 369, Mismatches: 33, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
80 32 0.09
81 3 0.01
82 236 0.64
83 20 0.05
84 22 0.06
85 18 0.05
86 4 0.01
87 2 0.01
88 32 0.09
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (82 bp):
ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTA
GTAGTGGAGCAGACAGA
Found at i:13167781 original size:128 final size:128
Alignment explanation
Indices: 13167334--13167995 Score: 659
Period size: 122 Copynumber: 5.3 Consensus size: 128
13167324 CCACAGATCT
* *** * *
13167334 TATCTCCCT-AAGTAGTAGTGGAGCAGA-TCGCATCA-AG-TCTTATCTCCCTAAGTAGTAGTGG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
* * * ***
13167395 AGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC------TCCTCAAGT
66 AGCAGATCGCATCA-AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAAAAAATCAA-T
*
13167454 CT
127 CC
** * *
13167456 TATCTCCCT-AAGCAGTAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
* * ** *
13167519 AGCAGATCACATCAAGTCTTATATCCCTAAGCAGTAGTGGAGCAGACAG--AACCA-CAGATCT
66 AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAATCA-ATCC
** *** * *
13167580 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGCATCA-AG-TCTTATCTCCCTAAGTAGT-GATG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAG-TG
*
13167640 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAAAAATCAATCC
65 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAATCAATCC
* **
13167704 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
* *
13167769 AGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAAAAAAAACCAATCC
66 AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAG--AAAAAAATCAATCC
* * *
13167834 TATCTCCCTGAAGTTATAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCT--GCAGTTGCAG
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAG-T--AG
* * * *
13167897 TAGAGCAGATCGCATCAAGTCTTATCTCCGTAAGCAGTAATGGAGCAGACA-AAAGAAATCAATC
63 TGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAATCAATC
13167961 C
128 C
* * *
13167962 TATTTCCCTGATGTTGCAGTGGAGCAGATTAAAA
1 TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAA
13167996 ACGATGAATC
Statistics
Matches: 467, Mismatches: 52, Indels: 36
0.84 0.09 0.06
Matches are distributed among these distances:
121 2 0.00
122 126 0.27
123 6 0.01
124 84 0.18
125 17 0.04
126 4 0.01
127 2 0.00
128 113 0.24
129 2 0.00
130 62 0.13
131 49 0.10
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAATCAATCC
Found at i:13168272 original size:17 final size:18
Alignment explanation
Indices: 13168242--13168275 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13168232 GGACTAGAAT
*
13168242 GAAGCTACTTGAAGAAGA
1 GAAGCTACTAGAAGAAGA
13168260 GAAGC-ACTAGAAGAAG
1 GAAGCTACTAGAAGAAG
13168276 TCAAGACTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.12, G:0.29, T:0.12
Consensus pattern (18 bp):
GAAGCTACTAGAAGAAGA
Found at i:13170630 original size:106 final size:105
Alignment explanation
Indices: 13170363--13170678 Score: 416
Period size: 106 Copynumber: 3.0 Consensus size: 105
13170353 TTTTCTAAAT
* *
13170363 AAGGCAATGTTTTGCGTTTGAAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13170428 GTTTGACCAAAATAGCCAAATACCCTTTTTAAACTTTCAAAAT
66 GTTTGACC-AAATAGCCAAATATCC-TTTTAAA-TTTTAAAAC
* * * * * *
13170471 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTACTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13170536 GTTTGGCCAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACCAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * *
13170577 GAGGCAATGTTTTGCGTTTGGAAATTCGAGAGAATGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
13170642 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACCAAATAGCCAAATATCCTTTTAAATTTTAA
13170679 TCCATGTCAT
Statistics
Matches: 178, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
105 9 0.05
106 89 0.50
107 16 0.09
108 64 0.36
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (105 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTTGACCAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:13172257 original size:19 final size:19
Alignment explanation
Indices: 13172233--13172269 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
13172223 AGTCAGCAAA
13172233 TCAGACAACTTCTTAATTT
1 TCAGACAACTTCTTAATTT
13172252 TCAGACAACTTCTTAATT
1 TCAGACAACTTCTTAATT
13172270 GTGAACTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (19 bp):
TCAGACAACTTCTTAATTT
Found at i:13185048 original size:21 final size:21
Alignment explanation
Indices: 13185022--13185165 Score: 65
Period size: 21 Copynumber: 6.9 Consensus size: 21
13185012 CACAAAAGCA
*
13185022 CATAAGTGCTAAACAGAAACC
1 CATAAGGGCTAAACAGAAACC
* * ** * *
13185043 CATAAGGGTTGAATGGAAGCT
1 CATAAGGGCTAAACAGAAACC
* * *
13185064 CATAAGAGCTGAACGGAAACC
1 CATAAGGGCTAAACAGAAACC
* * *
13185085 CATAAGGGTTAAACAGAAGCT
1 CATAAGGGCTAAACAGAAACC
* * *
13185106 CA-ATAGAGCTGAACGGAAACC
1 CATA-AGGGCTAAACAGAAACC
* * * *
13185127 CATTAGGGTTAAACGGAAACT
1 CATAAGGGCTAAACAGAAACC
* * *
13185148 CATATGAGTTAAACAGAA
1 CATAAGGGCTAAACAGAA
13185166 GTTTGTGAGA
Statistics
Matches: 88, Mismatches: 33, Indels: 4
0.70 0.26 0.03
Matches are distributed among these distances:
20 1 0.01
21 87 0.99
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.17
Consensus pattern (21 bp):
CATAAGGGCTAAACAGAAACC
Found at i:13185069 original size:42 final size:42
Alignment explanation
Indices: 13185017--13185165 Score: 165
Period size: 42 Copynumber: 3.5 Consensus size: 42
13185007 GGCTGCACAA
* * * *
13185017 AAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGAATGG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * *
13185059 AAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACAG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * *
13185101 AAGCTCA-ATAGAGCTGAACGGAAACCCATTAGGGTTAAACGG
1 AAGCTCATA-AGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * *
13185143 AAACTCATATGAGTTAAACAGAA
1 AAGCTCATAAGAGCTAAACAGAA
13185166 GTTTGTGAGA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 89 0.98
43 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
Found at i:13191524 original size:26 final size:26
Alignment explanation
Indices: 13191494--13191543 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
13191484 AACATAGAAG
*
13191494 TAAATACCGAAATGGGTTTACAAAAA
1 TAAATACCGAAATGAGTTTACAAAAA
13191520 TAAATACCGAAATGAGTTTACAAA
1 TAAATACCGAAATGAGTTTACAAA
13191544 TGTGTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (26 bp):
TAAATACCGAAATGAGTTTACAAAAA
Found at i:13202224 original size:19 final size:19
Alignment explanation
Indices: 13202202--13202249 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
13202192 TAATTCCCAT
13202202 AAAATAAATTTATTCTTAG
1 AAAATAAATTTATTCTTAG
13202221 AAAATAAATTTATTCTTAG
1 AAAATAAATTTATTCTTAG
*
13202240 GAAATAAATT
1 AAAATAAATT
13202250 ATCACTACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (19 bp):
AAAATAAATTTATTCTTAG
Found at i:13206459 original size:63 final size:63
Alignment explanation
Indices: 13206386--13206548 Score: 281
Period size: 63 Copynumber: 2.6 Consensus size: 63
13206376 TCATCTAAAA
* *
13206386 GGATTAGGATTAATTTCCTACTAATATATATGCAACATGCTTGCAGGGAATAGACCTCTAACG
1 GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
13206449 GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
1 GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
* * *
13206512 GGATTAGGATTAATTTCCAATTCATATAAATACAACA
1 GGATTAGGATTAATTTCCTACTAATATAAATACAACA
13206549 CCTTAAATTA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 95 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (63 bp):
GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
Found at i:13207906 original size:42 final size:42
Alignment explanation
Indices: 13207847--13207927 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
13207837 CTTCACAGAT
*
13207847 TAGATAATGACCTAACCCCCACCATCAGTGGTTGGGTTACAG
1 TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTACAG
13207889 TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTA
1 TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTA
13207928 AAGTGGTCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (42 bp):
TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTACAG
Found at i:13211226 original size:25 final size:27
Alignment explanation
Indices: 13211167--13211227 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 27
13211157 TTAAACTATA
*
13211167 CCCTCTTTTATTTTATTTATATTATTT
1 CCCTTTTTTATTTTATTTATATTATTT
13211194 CTCTCTTTTTGTATTTT-TTTAT-TT-TTT
1 C-C-CTTTTT-TATTTTATTTATATTATTT
13211221 CCCTTTT
1 CCCTTTT
13211228 ATGATGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
25 5 0.17
26 1 0.03
27 5 0.17
28 3 0.10
29 10 0.33
30 6 0.20
ACGTcount: A:0.11, C:0.16, G:0.02, T:0.70
Consensus pattern (27 bp):
CCCTTTTTTATTTTATTTATATTATTT
Found at i:13211530 original size:16 final size:16
Alignment explanation
Indices: 13211509--13211542 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
13211499 CGATTTTCTC
13211509 TATTTTT-TAATATTTT
1 TATTTTTATAA-ATTTT
13211525 TATTTTTATAAATTTT
1 TATTTTTATAAATTTT
13211541 TA
1 TA
13211543 ATAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTTATAAATTTT
Found at i:13213998 original size:21 final size:21
Alignment explanation
Indices: 13213972--13214077 Score: 97
Period size: 21 Copynumber: 5.0 Consensus size: 21
13213962 TTTGGGTGGA
*
13213972 TCAGCTCTTACGAGCTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
* *
13213993 TCAGCTCTCACGAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTGT
* * * *
13214014 TAAGCTGTTACAAGCTTCTATT
1 TCAGCTCTTACGAGCTTCT-GT
*
13214036 TC-GCTCTTATGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* * *
13214056 TTAGCTCTTATGAGTTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
13214077 T
1 T
13214078 GGCATGTTCG
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
20 2 0.03
21 64 0.94
22 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:13223481 original size:23 final size:23
Alignment explanation
Indices: 13223455--13223553 Score: 155
Period size: 23 Copynumber: 4.3 Consensus size: 23
13223445 ATAAGTGCAA
13223455 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
13223478 CACT-ATTATGTAGCCGAAGCTAC
1 CACTGA-TATGTAGCCGAAGCTAC
* *
13223501 CACTGAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
13223524 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
13223547 CACTGAT
1 CACTGAT
13223554 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
22 1 0.01
23 66 0.97
24 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:13225478 original size:12 final size:13
Alignment explanation
Indices: 13225451--13225475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13225441 TATTTGTACC
13225451 AAAAAATATTTTT
1 AAAAAATATTTTT
13225464 AAAAAATATTTT
1 AAAAAATATTTT
13225476 AAATTTGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAAAATATTTTT
Found at i:13227637 original size:21 final size:23
Alignment explanation
Indices: 13227605--13227646 Score: 54
Period size: 21 Copynumber: 1.9 Consensus size: 23
13227595 ATTTTACTAA
13227605 AATTTCATTCAA-AAA-TTGATC
1 AATTTCATTCAATAAAGTTGATC
13227626 AATTTACA-TCAATAAAGTTGA
1 AATTT-CATTCAATAAAGTTGA
13227647 AAACAGGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (23 bp):
AATTTCATTCAATAAAGTTGATC
Found at i:13228829 original size:16 final size:18
Alignment explanation
Indices: 13228797--13228829 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13228787 GTTAATAGAT
13228797 TAAATTTAGTGTTAATTG
1 TAAATTTAGTGTTAATTG
13228815 TAAATTT-GT-TTAATT
1 TAAATTTAGTGTTAATT
13228830 TATCAAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
TAAATTTAGTGTTAATTG
Found at i:13230016 original size:19 final size:19
Alignment explanation
Indices: 13229961--13229997 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
13229951 TAATAAACAC
*
13229961 TAAAAAATTATTTTAAAAA
1 TAAAAAAGTATTTTAAAAA
13229980 TAAAAAAGTATTTTAAAA
1 TAAAAAAGTATTTTAAAA
13229998 TTATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
TAAAAAAGTATTTTAAAAA
Found at i:13231609 original size:16 final size:16
Alignment explanation
Indices: 13231585--13231622 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
13231575 TTTGGTTCGC
* *
13231585 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
13231601 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
13231617 TGTAAT
1 TGTAAT
13231623 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:13231872 original size:16 final size:16
Alignment explanation
Indices: 13231835--13231876 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
13231825 TTAATCATAT
*
13231835 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
13231851 TT-AAATATATTATAA
1 TTAAAATATATTATAA
13231866 TTAAAATATAT
1 TTAAAATATAT
13231877 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:13231883 original size:14 final size:15
Alignment explanation
Indices: 13231844--13231885 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
13231834 TTTAAACATA
*
13231844 ATTATTATTAAATAT
1 ATTATAATTAAATAT
13231859 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
13231873 A-TATAATTTAATA
1 ATTATAATTAAATA
13231886 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:13232058 original size:47 final size:46
Alignment explanation
Indices: 13231992--13232233 Score: 148
Period size: 47 Copynumber: 5.3 Consensus size: 46
13231982 TTAATTAAAA
*
13231992 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTATCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTATCT
* * * * * *
13232039 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
* * * *
13232084 TA-AT-AATAATATATAATTTCATAA-AATTATAGATAATAATTTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATTATA-ATAATAAATTATCT
* *
13232130 TATATGAATTTATACAATTTAAAATAA-T-TAATATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-ATCT
* * *
13232175 TA-AT-AATGATATATAATTTTATAA-AATTCTTAATAATAAAATGT-TCT
1 TATATGAAT-TTATATAA-TTTAAAATAATT-ATAATAAT-AAAT-TATCT
13232222 TATATGAATTTA
1 TATATGAATTTA
13232234 CTAAAATCAA
Statistics
Matches: 147, Mismatches: 29, Indels: 37
0.69 0.14 0.17
Matches are distributed among these distances:
43 6 0.04
44 34 0.23
45 25 0.17
46 16 0.11
47 47 0.32
48 16 0.11
49 3 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
Found at i:13232080 original size:26 final size:28
Alignment explanation
Indices: 13232051--13232123 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
13232041 TATGAATTTG
*
13232051 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
13232077 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
13232105 TAAAATTATAGATAATAAT
1 TATAATT-TA-ATAATAAT
13232124 TTTTCTTATA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
26 10 0.25
27 6 0.15
28 14 0.35
29 2 0.05
30 8 0.20
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:13232113 original size:91 final size:89
Alignment explanation
Indices: 13232017--13232233 Score: 299
Period size: 91 Copynumber: 2.4 Consensus size: 89
13232007 AATTTAAAAT
* * * *
13232017 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
13232082 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
*
13232108 AATTATAGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTATA-ATAATAA-ATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
* *
13232173 TTTAATAATGATATATAATTTTATAA
64 TTTAATAATAATATATAATTTCATAA
*
13232199 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
13232234 CTAAAATCAA
Statistics
Matches: 112, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
91 89 0.79
92 23 0.21
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:13232193 original size:44 final size:43
Alignment explanation
Indices: 13232051--13232193 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
13232041 TATGAATTTG
* *
13232051 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
* * * ** *
13232095 TATAATTTCATAA-AATTATAGATAATAAT-TTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTA-ATATTA-AATATAAT-TTA-AT-AATATA
*
13232142 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
13232186 TATAATTT
1 TATAATTT
13232194 TATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 24 0.32
45 14 0.19
46 14 0.19
47 16 0.22
48 3 0.04
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:13239937 original size:17 final size:17
Alignment explanation
Indices: 13239909--13239956 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
13239899 CTGATTACAA
13239909 AATTTGAATTTAATTTCC
1 AATTT-AATTTAATTTCC
*
13239927 AATTTAATTTAATTTTC
1 AATTTAATTTAATTTCC
13239944 AATTT-ATTTAATT
1 AATTTAATTTAATT
13239957 AATTATTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 8 0.28
17 16 0.55
18 5 0.17
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (17 bp):
AATTTAATTTAATTTCC
Found at i:13240279 original size:21 final size:21
Alignment explanation
Indices: 13240253--13240293 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13240243 CAATGTGGCA
13240253 AGTTAACTAACCACATCAGCT
1 AGTTAACTAACCACATCAGCT
* *
13240274 AGTTAACTTATCACATCAGC
1 AGTTAACTAACCACATCAGC
13240294 GATTTCGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (21 bp):
AGTTAACTAACCACATCAGCT
Found at i:13249673 original size:43 final size:43
Alignment explanation
Indices: 13249624--13249709 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
13249614 TCATATTACA
13249624 TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
*
13249667 TTTCTCATCTCATATTCATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
13249710 CAATCATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.21, C:0.27, G:0.00, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
Found at i:13249681 original size:15 final size:15
Alignment explanation
Indices: 13249624--13249682 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
13249614 TCATATTACA
13249624 TTTCTCATCTCATA-
1 TTTCTCATCTCATAT
* * *
13249638 -TTCACTTCTCATCT
1 TTTCTCATCTCATAT
*
13249652 TTTC-CATTTCAATAT
1 TTTCTCATCTC-ATAT
13249667 TTTCTCATCTCATAT
1 TTTCTCATCTCATAT
13249682 T
1 T
13249683 CATTTCTCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
13 10 0.29
14 4 0.12
15 15 0.44
16 5 0.15
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTCTCATCTCATAT
Found at i:13249690 original size:18 final size:18
Alignment explanation
Indices: 13249614--13249694 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 18
13249604 GTATCACATT
13249614 TCATATTACATTTCTCATC
1 TCATATT-CATTTCTCATC
*
13249633 TCATATTCACTTCTCATC
1 TCATATTCATTTCTCATC
13249651 TTTTCCAT-TTCAATATTTTCTCATC
1 ---T-CATATTC---A-TTTCTCATC
13249676 TCATATTCATTTCTCATC
1 TCATATTCATTTCTCATC
13249694 T
1 T
13249695 TTTCCATTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 19
0.71 0.03 0.26
Matches are distributed among these distances:
18 20 0.39
19 8 0.16
21 7 0.14
22 7 0.14
24 1 0.02
25 8 0.16
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (18 bp):
TCATATTCATTTCTCATC
Found at i:13250402 original size:19 final size:18
Alignment explanation
Indices: 13250364--13250402 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
13250354 TATTACACAA
*
13250364 TTCAATTTCACATTAAAT
1 TTCAATTTCACACTAAAT
*
13250382 TTCAATTTTCACACTATAT
1 TTCAA-TTTCACACTAAAT
13250401 TT
1 TT
13250403 TGCTTATTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (18 bp):
TTCAATTTCACACTAAAT
Found at i:13251332 original size:3 final size:3
Alignment explanation
Indices: 13251326--13251367 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
13251316 CTTCTTTTGG
13251326 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
13251368 CTGCTATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:13254494 original size:18 final size:18
Alignment explanation
Indices: 13254473--13254520 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
13254463 AAGATATGAG
*
13254473 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
13254491 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
13254509 AAATGATGTTCA
1 AAATGATGTTCA
13254521 GATTGATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:13255010 original size:72 final size:72
Alignment explanation
Indices: 13254929--13255168 Score: 376
Period size: 72 Copynumber: 3.3 Consensus size: 72
13254919 CAATGCTAAA
* *
13254929 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTTTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
13254994 GTGTAAT
66 GTGTAAT
*
13255001 CTAGTTTTATCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
13255066 GTGTAAT
66 GTGTAAT
* * *
13255073 CTAGTTTTATTAATAGTTGTTTATGTTTAGTCTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
13255138 ACT-AAAT
66 -GTGTAAT
13255145 -TAGTTTTTATCAATAGTTGTTTAT
1 CTAG-TTTTATCAATAGTTGTTTAT
13255169 ATATGATTTT
Statistics
Matches: 156, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
71 3 0.02
72 152 0.97
73 1 0.01
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:13257215 original size:13 final size:14
Alignment explanation
Indices: 13257177--13257215 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
13257167 AACACTCAGA
13257177 TTTTTCAAAAGCAC
1 TTTTTCAAAAGCAC
*
13257191 TTTTTC-ACAGCAC
1 TTTTTCAAAAGCAC
13257204 -TTTTCAAAAGCA
1 TTTTTCAAAAGCA
13257216 ATGAAGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 5 0.23
13 11 0.50
14 6 0.27
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (14 bp):
TTTTTCAAAAGCAC
Found at i:13257814 original size:13 final size:13
Alignment explanation
Indices: 13257796--13257823 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13257786 CGTAAACATC
13257796 TAATAAAAATATT
1 TAATAAAAATATT
13257809 TAATAAAAATATT
1 TAATAAAAATATT
13257822 TA
1 TA
13257824 TGAGTCCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATAAAAATATT
Found at i:13258664 original size:30 final size:30
Alignment explanation
Indices: 13258630--13258698 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
13258620 TAGGGGGATA
*
13258630 GAAAATGGTAGCT-TCGTTAAGTTTGTAACG
1 GAAAATGGTAGCTGT-GTTAAGTCTGTAACG
*
13258660 GAAAATGGTAGCTGTGTTACGTCTGTAACG
1 GAAAATGGTAGCTGTGTTAAGTCTGTAACG
*
13258690 AAAAATGGT
1 GAAAATGGT
13258699 TAGTGGTGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (30 bp):
GAAAATGGTAGCTGTGTTAAGTCTGTAACG
Found at i:13266800 original size:133 final size:133
Alignment explanation
Indices: 13266448--13267762 Score: 1518
Period size: 133 Copynumber: 9.9 Consensus size: 133
13266438 TGAAGATAGC
* * *
13266448 AGATCTTGCCTTCCTGCATAGACAGCGGAGCAGATCAAAGATGG-TGAATTTTACCTCCCTGTGG
1 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAG-ATTTTACCTCCCTGTGG
* * *
13266512 TTACAGTGGAGTACATTGAAGCCATTAATTCTA-CTTCCTTGGGCTGCAGTGGAATAGATTGAAG
65 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGATTGAAG
*
13266576 ATTTC
129 ATTTT
* * * * * *
13266581 AGATCTTGCCTCCCTAAGCAGTAG--TG-G-AGCAGGTCAAAGATGGCGGATTTTACCTCCCTAT
1 AGATCTTGCCTTCCT--GCA-TAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
* * ** *
13266642 GGTTACAGTAGAGTACATTGAAGCCAATAATTCTA-CTTCCCTAAGCAGTAGTGGAATAGATTGA
63 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGCAGTGGAATAGATTGA
13266706 AGATTTT
127 AGATTTT
* * *
13266713 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGTGCT
1 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGGT
*
13266778 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGACAGCAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
13266843 TTT
131 TTT
* * * *
13266846 AGATCTTGCCTTCCTGCATAGACAGCGAAGAAGATCGAAGACGACAGATTTTACCTCCCTATGGT
1 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGGT
* * *
13266911 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAGCAGCAGTGGAATAGACTAAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
13266976 TTT
131 TTT
* * * * * *
13266979 AGATCTTGCCTTCCTACATAGACAACAAAGCAGGTCGAAGACGGTAGATTTTACCTCCCTGTGGT
1 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGGT
* *
13267044 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGAAATAGACTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
13267109 TTT
131 TTT
* * * * * *
13267112 AGATCTTGCCTTCCTGCATAGGCAACGAAGAAGATCGAAGACGACAGATTTTACCTCACTGTGGT
1 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGGT
* *
13267177 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGTGGAATAGACTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
13267242 TTT
131 TTT
* * * ** *
13267245 ATATCTTGCCTTCCTGCATAGACAGCGAAGTAGGTTGAAGACGGCAGATTTTACCTCTCTGTGGT
1 AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGGT
* * *
13267310 TATAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
*
13267375 TTC
131 TTT
* * * * * * * *
13267378 ATATATTGTCTTCCTAAGCATTAG--TG-G-AGCAGATCAAAGATGACAGATTTTACCTCCTTGA
1 AGATCTTGCCTTCCT--GCA-TAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
* * * *
13267439 GGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTAGGTAGCAGTGGAATAGATTGAA
63 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAA
**
13267504 GATTAC
128 GATTTT
* ** * * * ** *
13267510 AGATATTATCTCCCTAAGCAATAG--TG-G-AGCAGATCAAAGATGGTGGATTTTACCTCCCTGA
1 AGATCTTGCCTTCCT--GC-ATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
* * * *
13267571 GGTTGCAGTAGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTAAA
63 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAA
**
13267636 GATTAC
128 GATTTT
** * * * * *
13267642 AGATCTTATCTCCCTAAGCAATAG--TG-G-AGCAGATCAAAGATGGTAGATTTTACCTCCCTGA
1 AGATCTTGCCTTCCT--GC-ATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
*
13267703 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCC-GGAGCAACAGTGGAATAGA
63 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGG-GCAGCAGTGGAATAGA
13267763 CAGAAGAAAT
Statistics
Matches: 1067, Mismatches: 101, Indels: 29
0.89 0.08 0.02
Matches are distributed among these distances:
129 3 0.00
130 3 0.00
131 3 0.00
132 430 0.40
133 613 0.57
134 3 0.00
135 6 0.01
136 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (133 bp):
AGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGGT
TACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
TTT
Found at i:13267699 original size:44 final size:44
Alignment explanation
Indices: 13267510--13267700 Score: 116
Period size: 44 Copynumber: 4.3 Consensus size: 44
13267500 TGAAGATTAC
*
13267510 AGATATTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGT
1 AGATTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGT
* * * ** * * * ** ***
13267554 GGATTTTACCTCCCTGAG-GTTGCAGTAGAGTACATTGAAGCCAGT
1 AGATTTTATCTCCCTAAGCAAT--AGTGGAGCAGATCAAAGATGGT
* ** * ** * ***
13267599 A-ATTCTATCTCCCTGGGCAACAGTGGAATAGATTAAAGATTAC
1 AGATTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGT
*
13267642 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGT
1 AGATTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGT
*
13267686 AGATTTTACCTCCCT
1 AGATTTTATCTCCCT
13267701 GAGGTTACAG
Statistics
Matches: 100, Mismatches: 43, Indels: 8
0.66 0.28 0.05
Matches are distributed among these distances:
43 15 0.15
44 71 0.71
45 14 0.14
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
AGATTTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGT
Found at i:13267743 original size:44 final size:45
Alignment explanation
Indices: 13267576--13267757 Score: 108
Period size: 44 Copynumber: 4.2 Consensus size: 45
13267566 CCTGAGGTTG
* *
13267576 CAGTAGAGTACATTGAAGCCAGTA-ATTCTATCTCCCTG-GGCAA
1 CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
* * * * *
13267619 CAGTGGAATAGATTAAAG--ATTACAGATCTTATCTCCCT-AAGCAA
1 CAGTGGAGTACATTAAAGCCAGTACA-TTC-TATCTCCCTGAGGCAA
* * * * *** * * * **
13267663 TAGTGGAGCAGATCAAAGATGGTAGATTTTACCTCCCTGAGGTTA
1 CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
* *
13267708 CAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTCCCGGA-GCAA
1 CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
13267751 CAGTGGA
1 CAGTGGA
13267758 ATAGACAGAA
Statistics
Matches: 99, Mismatches: 33, Indels: 14
0.68 0.23 0.10
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 25 0.25
44 47 0.47
45 20 0.20
46 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (45 bp):
CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
Found at i:13291519 original size:379 final size:379
Alignment explanation
Indices: 13290820--13291575 Score: 1485
Period size: 379 Copynumber: 2.0 Consensus size: 379
13290810 TTTTGCTCAC
13290820 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
1 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
13290885 TCTCATGAAACATTGAATCTTTTGTAAGGAAGATGACACTTTGACTGTCACAAAATACTGTATTG
66 TCTCATGAAACATTGAATCTTTTGTAAGGAAGATGACACTTTGACTGTCACAAAATACTGTATTG
13290950 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
131 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
*
13291015 AGTAGTTTGCAAGATGGCTTTTCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
196 AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
13291080 GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
261 GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
*
13291145 TTTCTTCCAAACTATAAGCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAAGT
326 TTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAAGT
13291199 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
1 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
13291264 TCTCATGAAACATTGAATCTTTTGTAAGGAAGATGACACTTTGACTGTCACAAAATACTGTATTG
66 TCTCATGAAACATTGAATCTTTTGTAAGGAAGATGACACTTTGACTGTCACAAAATACTGTATTG
13291329 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
131 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
*
13291394 AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACTCCTAATTGTAAAGACATAACCCGTGA
196 AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
13291459 GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
261 GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
13291524 TTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAA
326 TTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAA
13291576 TCCATTGAAC
Statistics
Matches: 374, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
379 374 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (379 bp):
AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
TCTCATGAAACATTGAATCTTTTGTAAGGAAGATGACACTTTGACTGTCACAAAATACTGTATTG
ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
TTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAAGT
Found at i:13300308 original size:18 final size:18
Alignment explanation
Indices: 13300261--13300308 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
13300251 AGGTGATACC
* *
13300261 TTTACTTTATTTTACTTAA
1 TTTACTTT-TATTAATTAA
13300280 TTTA-TTATTATTAATTAA
1 TTTACTT-TTATTAATTAA
13300298 TTTACTTTTAT
1 TTTACTTTTAT
13300309 AACCTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTACTTTTATTAATTAA
Found at i:13301378 original size:49 final size:49
Alignment explanation
Indices: 13301294--13301395 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 49
13301284 TTATGCTATG
* * *
13301294 CATTTCTAAACTTGGTCTTCCACTGTGTACACTCTTATCACTATTTATA
1 CATTGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATA
* * * * *
13301343 CATTGCTAAACTTATTCTTCCCCTGTCTACGCTCTTATCATTATTTATC
1 CATTGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATA
13301392 CATT
1 CATT
13301396 CTAGAATGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.23, C:0.26, G:0.07, T:0.44
Consensus pattern (49 bp):
CATTGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTATA
Found at i:13301986 original size:9 final size:9
Alignment explanation
Indices: 13301969--13302005 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13301959 TGAGTTTTCG
13301969 AATTCGAAT
1 AATTCGAAT
*
13301978 AACTCGAAT
1 AATTCGAAT
*
13301987 AATTCAAAT
1 AATTCGAAT
13301996 AATTCGAAT
1 AATTCGAAT
13302005 A
1 A
13302006 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13302525 original size:17 final size:17
Alignment explanation
Indices: 13302505--13302551 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
13302495 CACATTTTAT
13302505 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
13302522 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
13302540 A-TATTTATATTA
1 ATTATTTATATTA
13302552 AAATTGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:13303010 original size:5 final size:5
Alignment explanation
Indices: 13303000--13303025 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13302990 CTCGAAAATT
13303000 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
13303026 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:13306881 original size:66 final size:66
Alignment explanation
Indices: 13306775--13306908 Score: 216
Period size: 66 Copynumber: 2.0 Consensus size: 66
13306765 GTTTCAACCT
* *
13306775 TTGGATTTATCAAATCAACCTTTCAATCCTCTTAAACCTTCTATGGAGGAACCTCCTACATTAGA
1 TTGGATTTATCAAATCAACCTTTCAATCCTCTTAAACCTTCTATGGAAGAACCTCCTACACTAGA
13306840 G
66 G
* *
13306841 TTGGATTTATCAAATCAACCTTTCAATCCT-TCTAAACCTTCTATGGAAGAACTTCTTACACTAG
1 TTGGATTTATCAAATCAACCTTTCAATCCTCT-TAAACCTTCTATGGAAGAACCTCCTACACTAG
13306905 AG
65 AG
13306907 TT
1 TT
13306909 ACAACCTTTG
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 1 0.02
66 62 0.98
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (66 bp):
TTGGATTTATCAAATCAACCTTTCAATCCTCTTAAACCTTCTATGGAAGAACCTCCTACACTAGA
G
Found at i:13312350 original size:20 final size:21
Alignment explanation
Indices: 13312322--13312364 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
13312312 TTAGTTTAAT
*
13312322 CTAGTAATAAAGTA-AATGAG
1 CTAGAAATAAAGTAGAATGAG
*
13312342 CTAGAAATAAATTAGAATGAG
1 CTAGAAATAAAGTAGAATGAG
13312363 CT
1 CT
13312365 CAAATGAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.26
Consensus pattern (21 bp):
CTAGAAATAAAGTAGAATGAG
Found at i:13312369 original size:20 final size:20
Alignment explanation
Indices: 13312327--13312369 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
13312317 TTAATCTAGT
*
13312327 AATAAAGTAAATGAGCTAGA
1 AATAAAGTAAATGAGCTACA
*
13312347 AATAAATTAGAATGAGCT-CA
1 AATAAAGTA-AATGAGCTACA
13312367 AAT
1 AAT
13312370 GAGCTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.23
Consensus pattern (20 bp):
AATAAAGTAAATGAGCTACA
Found at i:13314091 original size:36 final size:36
Alignment explanation
Indices: 13314051--13314142 Score: 105
Period size: 36 Copynumber: 2.5 Consensus size: 36
13314041 ATTCTCGCTC
*
13314051 TCTTTTTCAATTTGCTTTTCTTGCTCGCA-CTCTTTT
1 TCTTTTTCAATTT-CTTTTCTTGCTCCCACCTCTTTT
* * *
13314087 TCTTTTTCAATCTCATTTGCTTTCTCCCACTCTCTTTT
1 TCTTTTTCAATTTC-TTTTCTTGCTCCCAC-CTCTTTT
*
13314125 TCTTTTTAAATTTCTTTT
1 TCTTTTTCAATTTCTTTT
13314143 TCTTTCATCT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
35 1 0.02
36 23 0.50
37 3 0.07
38 19 0.41
ACGTcount: A:0.11, C:0.25, G:0.04, T:0.60
Consensus pattern (36 bp):
TCTTTTTCAATTTCTTTTCTTGCTCCCACCTCTTTT
Found at i:13318985 original size:139 final size:140
Alignment explanation
Indices: 13318779--13319043 Score: 435
Period size: 139 Copynumber: 1.9 Consensus size: 140
13318769 CATGGGATAT
** *
13318779 TTGGATTTACCCTAGGGAAAAAAATTATAAAAAGTCAAAGGAGGAAACCCTAAAGGGGGCAAACA
1 TTGGATTTACCCTAGGGAAAAAAATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
* *
13318844 AAAAGAAGAAGAGAGATCCTTAGGTGAACACAAAA-A-AGTGGAGATCCAGAGGCAACAATAAAT
66 AAAA-AAGAAGAAAGATCCTTAGGCGAACACAAAAGAGAGTGGAGATCCAGAGGCAACAATAAAT
13318907 ATCATGAGCAG
130 ATCATGAGCAG
*
13318918 TTGGATTTACCCTAGGGAAAAAGATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
1 TTGGATTTACCCTAGGGAAAAAAATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
* *
13318983 AAAAAAGAAGAAAGATCCTTAGGCGAACACAAAAGAGTGTGGAGATCCGGAGGCAACAATA
66 AAAAAAGAAGAAAGATCCTTAGGCGAACACAAAAGAGAGTGGAGATCCAGAGGCAACAATA
13319044 GAAGGTAGCA
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
138 28 0.24
139 66 0.57
140 22 0.19
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.14
Consensus pattern (140 bp):
TTGGATTTACCCTAGGGAAAAAAATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
AAAAAAGAAGAAAGATCCTTAGGCGAACACAAAAGAGAGTGGAGATCCAGAGGCAACAATAAATA
TCATGAGCAG
Found at i:13319508 original size:159 final size:159
Alignment explanation
Indices: 13319219--13319537 Score: 584
Period size: 159 Copynumber: 2.0 Consensus size: 159
13319209 ACGATGTTGG
*
13319219 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAATCTCATAGGGTTGGGATTAC
1 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAATCTCATAGGGTTGAGATTAC
** *
13319284 ATGATGGAACTTTTATTTCCTTTAATGGTTGAAGCATATATTTGATTTAATCTACTGTTTCATTC
66 ATGATCAAACTTTTATTTCCTTTAATAGTTGAAGCATATATTTGATTTAATCTACTGTTTCATTC
13319349 AATTGTTTTTATTTCCTAACTGTATGTGT
131 AATTGTTTTTATTTCCTAACTGTATGTGT
*
13319378 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAATCTCATAGGGTTTAGATTAC
1 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAATCTCATAGGGTTGAGATTAC
13319443 ATGATCAAACTTTTATTTCCTTTAATAGTTGAAGCATATATTTGATTTAATCTACTGTTTCATTC
66 ATGATCAAACTTTTATTTCCTTTAATAGTTGAAGCATATATTTGATTTAATCTACTGTTTCATTC
*
13319508 AATTGTTTTTATTTCGTAACTGTATGTGT
131 AATTGTTTTTATTTCCTAACTGTATGTGT
13319537 A
1 A
13319538 CATTCTTTAG
Statistics
Matches: 154, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
159 154 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (159 bp):
ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAATCTCATAGGGTTGAGATTAC
ATGATCAAACTTTTATTTCCTTTAATAGTTGAAGCATATATTTGATTTAATCTACTGTTTCATTC
AATTGTTTTTATTTCCTAACTGTATGTGT
Found at i:13326164 original size:19 final size:20
Alignment explanation
Indices: 13326132--13326171 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
13326122 TTTTTTTTAA
*
13326132 TATTTAATTAATTTTAGTTT
1 TATTTAATTAATTTTAATTT
*
13326152 TATTT-ATTTATTTTAATTT
1 TATTTAATTAATTTTAATTT
13326171 T
1 T
13326172 TTAATTTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
TATTTAATTAATTTTAATTT
Found at i:13338551 original size:13 final size:13
Alignment explanation
Indices: 13338533--13338571 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
13338523 TATACTTTTT
13338533 AATATTTTTTAAA
1 AATATTTTTTAAA
*
13338546 AATATTTTTTTTAA
1 AATA-TTTTTTAAA
13338560 AA-ATTTTTTAAA
1 AATATTTTTTAAA
13338572 TTAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 8 0.35
13 5 0.22
14 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATATTTTTTAAA
Found at i:13338557 original size:15 final size:14
Alignment explanation
Indices: 13338537--13338568 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
13338527 CTTTTTAATA
13338537 TTTTTTAAAAATATT
1 TTTTTTAAAAAT-TT
13338552 TTTTTTAAAAATTT
1 TTTTTTAAAAATTT
13338566 TTT
1 TTT
13338569 AAATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTTTAAAAATTT
Found at i:13340259 original size:25 final size:25
Alignment explanation
Indices: 13340167--13340262 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 25
13340157 TATTAGCATG
* * *
13340167 ATCAAAATCACATATCATTCTCAGA
1 ATCAGAATGACATATCATTATCAGA
*
13340192 ATCATG-ATGACATATCATTACCA-A
1 ATCA-GAATGACATATCATTATCAGA
* * * * *
13340216 GATTAGAATAACCTTTCATTATCGGA
1 -ATCAGAATGACATATCATTATCAGA
13340242 ATCAGAATGACATATCATTAT
1 ATCAGAATGACATATCATTAT
13340263 TTACAATTGG
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
24 2 0.04
25 50 0.94
26 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (25 bp):
ATCAGAATGACATATCATTATCAGA
Found at i:13343689 original size:55 final size:55
Alignment explanation
Indices: 13343610--13343721 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
13343600 ATTTAAAAGA
13343610 TAATTAATTAAAATGGATGGTGGTGATCATAGCCCTCCACTAACCTTGTAATAAT
1 TAATTAATTAAAATGGATGGTGGTGATCATAGCCCTCCACTAACCTTGTAATAAT
13343665 TAATTAATTAAAATGGATGGTGGTGATCATAGCCCTCCACTAACCTTGTAATAAT
1 TAATTAATTAAAATGGATGGTGGTGATCATAGCCCTCCACTAACCTTGTAATAAT
13343720 TA
1 TA
13343722 TGTGTTAATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (55 bp):
TAATTAATTAAAATGGATGGTGGTGATCATAGCCCTCCACTAACCTTGTAATAAT
Found at i:13351094 original size:20 final size:20
Alignment explanation
Indices: 13351069--13351106 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13351059 TAAAGTTATA
* *
13351069 TATTTTATATTGGATGGATG
1 TATTTTACATTAGATGGATG
13351089 TATTTTACATTAGATGGA
1 TATTTTACATTAGATGGA
13351107 GATGGAGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (20 bp):
TATTTTACATTAGATGGATG
Found at i:13351435 original size:41 final size:40
Alignment explanation
Indices: 13351379--13351680 Score: 325
Period size: 41 Copynumber: 7.4 Consensus size: 40
13351369 CCTTTCGAGG
* * * * *
13351379 CTTTAGCGGCATTTTTGAAAAAGCACCGCTAAAGATCGAGA
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTC-AGA
* * * * *
13351420 TTTTAGCGGTGTTTTTGGATAAGCGCCACTAATACTCAGA
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
* * * * *
13351460 GATTTAGCGGCGTTTTTGAAAAATCGCTGCTAATGCTCAGCG
1 -CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAG-A
* *
13351502 CTTTAGCGGTGTTTTTGGAGAAGCGCCGCTAATGCTCAGA
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
* *
13351542 GCTTTAGCTGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGA
1 -CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
*
13351583 GCTTTAGTGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
1 -CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
* * *
13351624 TCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTCGGG
1 -CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
*
13351665 CTTTTAGCGGCATTTT
1 C-TTTAGCGGCGTTTT
13351681 AAAAAAAGCG
Statistics
Matches: 220, Mismatches: 37, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
40 4 0.02
41 216 0.98
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
Found at i:13351517 original size:82 final size:82
Alignment explanation
Indices: 13351378--13351674 Score: 364
Period size: 82 Copynumber: 3.6 Consensus size: 82
13351368 ACCTTTCGAG
* * * * * * *
13351378 GCTTTAGCGGCATTTTTGAAAAAGCACCGCTAAAGATC-GAGATTTTAGCGGTGTTTTTGGATAA
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAG-CTTTAGCGGTGTTTTTGGAAAA
* *
13351442 GCGCCACTAATACTCAGA
65 GCGCCGCTAATGCTCAGA
* * * * * *
13351460 GATTTAGCGGCGTTTTTGAAAAATCGCTGCTAATGCTCAGCGCTTTAGCGGTGTTTTTGGAGAAG
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGTGTTTTTGGAAAAG
13351525 CGCCGCTAATGCTCAGA
66 CGCCGCTAATGCTCAGA
* * * *
13351542 GCTTTAGCTGCGTTTTTGGAGAAGCGCCGCTAATGCTCAGAGCTTTAGTGGCGTTTTTGGAAAAG
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGTGTTTTTGGAAAAG
13351607 CGCCGCTAATGCTCAGA
66 CGCCGCTAATGCTCAGA
* * *
13351624 TCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTC-GGGCTTTTAGCGG
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGC-TTTAGCGG
13351675 CATTTTAAAA
Statistics
Matches: 185, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
81 3 0.02
82 180 0.97
83 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (82 bp):
GCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGTGTTTTTGGAAAAG
CGCCGCTAATGCTCAGA
Found at i:13351597 original size:123 final size:123
Alignment explanation
Indices: 13351378--13351680 Score: 358
Period size: 123 Copynumber: 2.5 Consensus size: 123
13351368 ACCTTTCGAG
* * * * * * * * *
13351378 GCTTTAGCGGCATTTTTGAAAAAGCACCGCTAAAGATC-GAGATTTTAGCGGTGTTTTTGGATAA
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTCAGAG-CTTTAGCGGCGTTTTTGGAGAA
* * *
13351442 GCGCCACTAATACTCAGAGATTTAGCGGCGTTTTTGAAAAATCGCTGCTAATGCTCAGC
65 GCGCCACTAATACTCAGAGATTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* * * *
13351501 GCTTTAGCGGTGTTTTTGGAGAAGCGCCGCTAATGCTCAGAGCTTTAGCTGCGTTTTTGGAGAAG
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTCAGAGCTTTAGCGGCGTTTTTGGAGAAG
* * * * *
13351566 CGCCGCTAATGCTCAGAGCTTTAGTGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA
66 CGCCACTAATACTCAGAGATTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
* * *
13351624 TCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTC-GGGCTTTTAGCGGCATTTT
1 GCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTCAGAGC-TTTAGCGGCGTTTT
13351681 AAAAAAAGCG
Statistics
Matches: 152, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
122 3 0.02
123 146 0.96
124 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (123 bp):
GCTTTAGCGGCGTTTTTGGAAAAGCGCCACTAATGCTCAGAGCTTTAGCGGCGTTTTTGGAGAAG
CGCCACTAATACTCAGAGATTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGA
Found at i:13352122 original size:14 final size:15
Alignment explanation
Indices: 13352094--13352126 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
13352084 AATGTTTATA
13352094 GATTATGGAATTAGG
1 GATTATGGAATTAGG
13352109 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
13352123 GATT
1 GATT
13352127 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:13352328 original size:81 final size:84
Alignment explanation
Indices: 13352206--13352378 Score: 228
Period size: 83 Copynumber: 2.1 Consensus size: 84
13352196 TTCAGTGTCA
* * * *
13352206 GGTTAGGCTTTAGGGTTTAGATTAATTAGTGTGTTTTAA-TT-TATATTATATAAGATTTAGGGG
1 GGTTAGGGTTTAAGGTTTAGATAAATTAGTGTGTTTTAATTTATATATTAAATAAGATTTAGGGG
* *
13352269 TTAGGGGTTAGGGATT-TG
66 TTAGGAGTTAGGGATTAGG
*
13352287 GGTTAGGGTTTAAGGTTTAGATAAATTAGTGT-TTTTAAATTTATATATTAAATAAGGTTTAGGG
1 GGTTAGGGTTTAAGGTTTAGATAAATTAGTGTGTTTT-AATTTATATATTAAATAAGATTTAGGG
* *
13352351 GTTAGTAGTTAGGGGTTAGG
65 GTTAGGAGTTAGGGATTAGG
13352371 GGTTAGGG
1 GGTTAGGG
13352379 GTTATGAGTT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 4 0.05
81 31 0.39
82 2 0.03
83 33 0.42
84 9 0.11
ACGTcount: A:0.27, C:0.01, G:0.31, T:0.42
Consensus pattern (84 bp):
GGTTAGGGTTTAAGGTTTAGATAAATTAGTGTGTTTTAATTTATATATTAAATAAGATTTAGGGG
TTAGGAGTTAGGGATTAGG
Found at i:13352364 original size:14 final size:14
Alignment explanation
Indices: 13352345--13352389 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
13352335 TAAATAAGGT
*
13352345 TTAGGGGTTAGTAG
1 TTAGGGGTTAGGAG
*
13352359 TTAGGGGTTAGGGG
1 TTAGGGGTTAGGAG
*
13352373 TTAGGGGTTATGAG
1 TTAGGGGTTAGGAG
13352387 TTA
1 TTA
13352390 TGATTTAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (14 bp):
TTAGGGGTTAGGAG
Found at i:13352368 original size:7 final size:7
Alignment explanation
Indices: 13352345--13352382 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
13352335 TAAATAAGGT
13352345 TTAGGGG
1 TTAGGGG
**
13352352 TTAGTAG
1 TTAGGGG
13352359 TTAGGGG
1 TTAGGGG
13352366 TTAGGGG
1 TTAGGGG
13352373 TTAGGGG
1 TTAGGGG
13352380 TTA
1 TTA
13352383 TGAGTTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.34
Consensus pattern (7 bp):
TTAGGGG
Found at i:13352389 original size:21 final size:21
Alignment explanation
Indices: 13352345--13352389 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
13352335 TAAATAAGGT
* *
13352345 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGGAGTTAGGAG
* *
13352366 TTAGGGGTTAGGGGTTATGAG
1 TTAGGGGTTAGGAGTTAGGAG
13352387 TTA
1 TTA
13352390 TGATTTAGGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (21 bp):
TTAGGGGTTAGGAGTTAGGAG
Found at i:13357672 original size:34 final size:35
Alignment explanation
Indices: 13357607--13357672 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
13357597 TAATTGTGTT
*
13357607 ATTAATTTATTATTTTAAATTTTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTTTAAAGTTAAATTC
*
13357642 ATTAATTT-TTATATTT-AGTTTTAAAGTTAAA
1 ATTAATTTATTAT-TTTAAATTTTAAAGTTAAA
13357673 ATTTCCGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTTTAAAGTTAAATTC
Found at i:13357675 original size:35 final size:35
Alignment explanation
Indices: 13357607--13357675 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
13357597 TAATTGTGTT
*
13357607 ATTAATTTATTATTTTAAATTTTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTTTAAATTAAAATTC
*
13357642 ATTAATTT-TTATATTT-AGTTTTAAAGTTAAAATT
1 ATTAATTTATTAT-TTTAAATTTTAAA-TTAAAATT
13357676 TCCGTAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 12 0.40
35 18 0.60
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTTTAAATTAAAATTC
Found at i:13357838 original size:43 final size:42
Alignment explanation
Indices: 13357794--13357970 Score: 196
Period size: 43 Copynumber: 4.2 Consensus size: 42
13357784 TGTTTTTAGT
* *
13357794 GGCGTTTGTGTGAAAAGCGCCGCTAAAAGTCTTGATCTATAGT
1 GGCGTTT-TGTGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* * * *
13357837 GGCATTTTGTGAAAAAGCGTCGCTAAAGGTCCTGATCTAGAGC
1 GGCGTTTTGTG-AAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* *
13357880 GGCG-TTTGTGAAAAGTGCCGCTAAAGGTCTTGATTTATAGC
1 GGCGTTTTGTGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
* * **
13357921 AGTGTTTTCGAAAAAAGCGCCGCTAAAGGT-TATGATCTATAGC
1 GGCGTTTT-GTGAAAAGCGCCGCTAAAGGTCT-TGATCTATAGC
13357964 GGCGTTT
1 GGCGTTT
13357971 ATTTCAAAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 28 0.25
42 14 0.13
43 68 0.62
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (42 bp):
GGCGTTTTGTGAAAAGCGCCGCTAAAGGTCTTGATCTATAGC
Found at i:13357937 original size:84 final size:84
Alignment explanation
Indices: 13357802--13357970 Score: 214
Period size: 84 Copynumber: 2.0 Consensus size: 84
13357792 GTGGCGTTTG
** * *
13357802 TGTGAAAAGCGCCGCTAAAAGTCTTGATCTATAGTGGCATTTTGTGAAAAAGCGTCGCTAAAGGT
1 TGTGAAAAGCGCCGCTAAAAGTCTTGATCTATAGCAGCATTTTGTAAAAAAGCGCCGCTAAAGGT
*
13357867 CCTGATCTAGAGCGGCGTT
66 CATGATCTAGAGCGGCGTT
* * * **
13357886 TGTGAAAAGTGCCGCTAAAGGTCTTGATTTATAGCAGTGTTTTCG-AAAAAAGCGCCGCTAAAGG
1 TGTGAAAAGCGCCGCTAAAAGTCTTGATCTATAGCAGCATTTT-GTAAAAAAGCGCCGCTAAAGG
* *
13357950 TTATGATCTATAGCGGCGTT
65 TCATGATCTAGAGCGGCGTT
13357970 T
1 T
13357971 ATTTCAAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
84 71 0.99
85 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (84 bp):
TGTGAAAAGCGCCGCTAAAAGTCTTGATCTATAGCAGCATTTTGTAAAAAAGCGCCGCTAAAGGT
CATGATCTAGAGCGGCGTT
Found at i:13360738 original size:6 final size:6
Alignment explanation
Indices: 13360727--13360757 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
13360717 TGTCGGCCTG
*
13360727 CCTTGC CCTTGC CCTTGG CCTTGC CCTTGC C
1 CCTTGC CCTTGC CCTTGC CCTTGC CCTTGC C
13360758 TGCTTCTCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.19, T:0.32
Consensus pattern (6 bp):
CCTTGC
Found at i:13377340 original size:14 final size:15
Alignment explanation
Indices: 13377314--13377342 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13377304 TACAAAAGTG
13377314 TTATAATATATTTAT
1 TTATAATATATTTAT
13377329 TTATAA-ATATTTAT
1 TTATAATATATTTAT
13377343 ATAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATAATATATTTAT
Found at i:13379662 original size:179 final size:179
Alignment explanation
Indices: 13379362--13379722 Score: 713
Period size: 179 Copynumber: 2.0 Consensus size: 179
13379352 TTTCAATATA
13379362 TATAGAAGAACATATCCTTATACTACTGGTTGAATATGTGTCATAGTTATAATTAGTATATGAGG
1 TATAGAAGAACATATCCTTATACTACTGGTTGAATATGTGTCATAGTTATAATTAGTATATGAGG
13379427 CCTAAGCTCCCAAACAAGTATCTTATCCGGACTAGACCCTGAACAAAGACATGATGTGGCTTACC
66 CCTAAGCTCCCAAACAAGTATCTTATCCGGACTAGACCCTGAACAAAGACATGATGTGGCTTACC
13379492 TGGGTAGTGTGTCTCGTAAGAGCATCCACTAGATTGTAAGTTTTTCGTT
131 TGGGTAGTGTGTCTCGTAAGAGCATCCACTAGATTGTAAGTTTTTCGTT
13379541 TATAGAAGAACATATCCTTATACTACTGGTTGAATATGTGTCATAGTTATAATTAGTATATGAGG
1 TATAGAAGAACATATCCTTATACTACTGGTTGAATATGTGTCATAGTTATAATTAGTATATGAGG
*
13379606 CCTAAGCTCCCAAACAAGTATCTTATCCGGACTTGACCCTGAACAAAGACATGATGTGGCTTACC
66 CCTAAGCTCCCAAACAAGTATCTTATCCGGACTAGACCCTGAACAAAGACATGATGTGGCTTACC
13379671 TGGGTAGTGTGTCTCGTAAGAGCATCCACTAGATTGTAAGTTTTTCGTT
131 TGGGTAGTGTGTCTCGTAAGAGCATCCACTAGATTGTAAGTTTTTCGTT
13379720 TAT
1 TAT
13379723 GTGGATTCCA
Statistics
Matches: 181, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
179 181 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (179 bp):
TATAGAAGAACATATCCTTATACTACTGGTTGAATATGTGTCATAGTTATAATTAGTATATGAGG
CCTAAGCTCCCAAACAAGTATCTTATCCGGACTAGACCCTGAACAAAGACATGATGTGGCTTACC
TGGGTAGTGTGTCTCGTAAGAGCATCCACTAGATTGTAAGTTTTTCGTT
Found at i:13388646 original size:45 final size:44
Alignment explanation
Indices: 13388548--13388723 Score: 131
Period size: 45 Copynumber: 3.9 Consensus size: 44
13388538 GCTATGCGCC
* * * * * *
13388548 TAAAGATGAGTAAGATCATGGCTGAAAGACGCCATGGCATCA-CA
1 TAAA-ATGAGTAAGAACATAGCTGAAAGATGCTATGACATCATGA
* *
13388592 CTAACAATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATGA
1 -TAA-AATGAGTAAGAACATAGCTGAAAGATGCTATGACATCATGA
* * * * *
13388638 TATAAATGAGTAAGATCAT-GACTAAAAGACGCCATGACATCATGG
1 TA-AAATGAGTAAGAACATAG-CTGAAAGATGCTATGACATCATGA
* * * *
13388683 TAAACAAGATTAAAAACATAGTTGAAAGATGCTATGACATC
1 TAAA-ATGAGTAAGAACATAGCTGAAAGATGCTATGACATC
13388724 CTACGAAAGC
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
44 3 0.03
45 97 0.93
46 4 0.04
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (44 bp):
TAAAATGAGTAAGAACATAGCTGAAAGATGCTATGACATCATGA
Found at i:13388709 original size:90 final size:90
Alignment explanation
Indices: 13388553--13388723 Score: 227
Period size: 90 Copynumber: 1.9 Consensus size: 90
13388543 GCGCCTAAAG
* * * * *
13388553 ATGAGTAAGATCATGGCTGAAAGACGCCATGGCATCACACTAACAATGAGTAAGACCATAGCTGA
1 ATGAGTAAGATCATGACTAAAAGACGCCATGACATCACACTAACAATGAGTAAAAACATAGCTGA
*
13388618 AAGATGTTATGACATCATGATATAA
66 AAGATGCTATGACATCATGATATAA
*** * *
13388643 ATGAGTAAGATCATGACTAAAAGACGCCATGACATCATGGTAAACAA-GATTAAAAACATAGTTG
1 ATGAGTAAGATCATGACTAAAAGACGCCATGACATCACACT-AACAATGAGTAAAAACATAGCTG
13388707 AAAGATGCTATGACATC
65 AAAGATGCTATGACATC
13388724 CTACGAAAGC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
90 64 0.93
91 5 0.07
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (90 bp):
ATGAGTAAGATCATGACTAAAAGACGCCATGACATCACACTAACAATGAGTAAAAACATAGCTGA
AAGATGCTATGACATCATGATATAA
Found at i:13388970 original size:27 final size:27
Alignment explanation
Indices: 13388938--13389011 Score: 114
Period size: 27 Copynumber: 2.7 Consensus size: 27
13388928 ATAGTTTGGT
13388938 AGGACGTTAAACATGGGATAGTCCAA-
1 AGGACGTTAAACATGGGATAGTCCAAC
* *
13388964 TGAGACGTTAAACACGGGATAGTCCAAC
1 AG-GACGTTAAACATGGGATAGTCCAAC
13388992 AGGACGTTAAACATGGGATA
1 AGGACGTTAAACATGGGATA
13389012 ATCTGTCGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (27 bp):
AGGACGTTAAACATGGGATAGTCCAAC
Found at i:13392972 original size:20 final size:22
Alignment explanation
Indices: 13392947--13392988 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
13392937 CCATTATTGA
13392947 GAAATTGAT-G-AATTAAGCTT
1 GAAATTGATAGAAATTAAGCTT
13392967 GAAATTGATAGAAATTAAGCTT
1 GAAATTGATAGAAATTAAGCTT
13392989 AGATCATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 1 0.05
22 10 0.50
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (22 bp):
GAAATTGATAGAAATTAAGCTT
Done.