Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 46 of 228
Found at i:13933287 original size:132 final size:132
Alignment explanation
Indices: 13933128--13933620 Score: 713
Period size: 132 Copynumber: 3.7 Consensus size: 132
13933118 TTTCGTCTGC
* * ** *
13933128 TCTTCAATCTATTCCACTGTTGTCCAGGGA-AGTAGAACTACTGGCTTTAATGTACTTTATTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAACTACTGGCTTCAATGTACTCCACTGTA
* * * * *
13933192 ATCTCAGAGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTG
65 ATCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
13933257 TAA
130 TAA
* * *
13933260 TCTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAACTACTGGCTTCAATGTACTCCACTGTA
* *
13933324 ACCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ATCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
**
13933389 TGG
130 TAA
* * *
13933392 T-TTTAATCTATTCCACTGCTACCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
* *
13933456 TATTAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 TCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
13933521 AA
131 AA
* * *
13933523 TCTTCAATCTATTCCACTGATGCCTAGGGAGATAGAACTACCGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
*
13933588 TCTTAGGGAGGTAAAATCCGCCATCTTCAATCT
66 TCTTAGGGAGGTAAAATCCGCCATCTTCGATCT
13933621 TCAATCTATT
Statistics
Matches: 322, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
131 117 0.36
132 205 0.64
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
TCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
AA
Found at i:13933595 original size:44 final size:45
Alignment explanation
Indices: 13933416--13933597 Score: 124
Period size: 44 Copynumber: 4.1 Consensus size: 45
13933406 ACTGCTACCC
** * *
13933416 AGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAAT-ATT
1 AGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
* * * * * * *
13933460 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCAC--TACTGCTT
1 AGGGAGATAGAA-CTACCAGCTTCAATCTACTCCACTGTAATGCTT
* *** * * *
13933504 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG--ATGCCT
1 AGGGAGAT-AGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
* *
13933548 AGGGAGATAGAACTACCGGCTTCAATGTACTCCACTGTAAT-CTT
1 AGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
13933592 AGGGAG
1 AGGGAG
13933598 GTAAAATCCG
Statistics
Matches: 101, Mismatches: 30, Indels: 14
0.70 0.21 0.10
Matches are distributed among these distances:
43 24 0.24
44 57 0.56
45 20 0.20
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (45 bp):
AGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
Found at i:13933600 original size:263 final size:263
Alignment explanation
Indices: 13933133--13933620 Score: 755
Period size: 263 Copynumber: 1.9 Consensus size: 263
13933123 TCTGCTCTTC
* ** * ** * *
13933133 AATCTATTCCACTGTTGTCCAGGGAAGTAGAACTACTGGCTTTAATGTACTTTATTGTAATCTCA
1 AATCTATTCCACTGCTACCCAGGGAAGTAGAACTACTGGCTTCAATGTACTCCACTGTAATATCA
* *
13933198 GAGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCT
66 GAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCT
* * * *
13933263 TCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCA
131 TCAATCTATTCCACTGATGCCCAGGAAAGTAGAACTACCGGCTTCAATGTACTCCACTGTAACCA
*
13933328 TAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT
196 TAGGGAGGTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT
13933393 TTT
261 TTT
*
13933396 AATCTATTCCACTGCTACCCAGGG-AGATAGAACTACTGGCTTCAATGTACTCCACTGTAATATT
1 AATCTATTCCACTGCTACCCAGGGAAG-TAGAACTACTGGCTTCAATGTACTCCACTGTAATATC
*
13933460 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
65 AGAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
* * *
13933525 TTCAATCTATTCCACTGATGCCTAGG-GAGATAGAACTACCGGCTTCAATGTACTCCACTGTAAT
130 TTCAATCTATTCCACTGATGCCCAGGAAAG-TAGAACTACCGGCTTCAATGTACTCCACTGTAAC
*
13933589 CTTAGGGAGGTAAAATCCGCCATCTTCAATCT
194 CATAGGGAGGTAAAATCCGCCATCTTCAATCT
13933621 TCAATCTATT
Statistics
Matches: 202, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
262 4 0.02
263 198 0.98
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (263 bp):
AATCTATTCCACTGCTACCCAGGGAAGTAGAACTACTGGCTTCAATGTACTCCACTGTAATATCA
GAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCT
TCAATCTATTCCACTGATGCCCAGGAAAGTAGAACTACCGGCTTCAATGTACTCCACTGTAACCA
TAGGGAGGTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT
TTT
Found at i:13933692 original size:96 final size:95
Alignment explanation
Indices: 13933521--13933701 Score: 274
Period size: 96 Copynumber: 1.9 Consensus size: 95
13933511 TAAGATCTGT
* * *
13933521 AATCTTCAATCTATTCCACTGATGCCTAGGGAGATAGAACTACCGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGATACCCAGAGAGATAGAACTACCGGCTTCAATGTACTCCACTGT
*
13933586 AATCTTAGGGAGGTAAAATCCGCCATCTTC
66 AATCTCAGGGAGGTAAAATCCGCCATCTTC
* *
13933616 AATCTTCAATCTATTCCACTG-TCAACCCAGAGAGATAGAATTATCGGCTTCAATGTACTCCACT
1 AATCTTCAATCTATTCCACTGAT--ACCCAGAGAGATAGAACTACCGGCTTCAATGTACTCCACT
*
13933680 GTAGTCTCAGGGAGGTAAAATC
64 GTAATCTCAGGGAGGTAAAATC
13933702 TACCATATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 1 0.01
95 21 0.27
96 55 0.71
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
AATCTTCAATCTATTCCACTGATACCCAGAGAGATAGAACTACCGGCTTCAATGTACTCCACTGT
AATCTCAGGGAGGTAAAATCCGCCATCTTC
Found at i:13933781 original size:45 final size:46
Alignment explanation
Indices: 13933732--13933846 Score: 139
Period size: 44 Copynumber: 2.6 Consensus size: 46
13933722 GCTGTCGATG
* * * *
13933732 CAGGAGGGTAAGATCTGCTATCTTTAG-TCTGCTCCACTGTTAGTA
1 CAGGAAGGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTA
* *
13933777 CAGGAAGGCAAGA-CTGGCT-TC-TTCGATCTGCTTCACCGTCAGTA
1 CAGGAAGGCAAGATCT-GCTATCTTTAGATCTGCTCCACCGTCAGTA
13933821 CAGGAAGGCAAGATCTGCTATCTTTA
1 CAGGAAGGCAAGATCTGCTATCTTTA
13933847 ACCAGCTCCA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
43 3 0.05
44 35 0.60
45 18 0.31
46 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (46 bp):
CAGGAAGGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTA
Found at i:13934269 original size:43 final size:43
Alignment explanation
Indices: 13934220--13934356 Score: 111
Period size: 42 Copynumber: 3.2 Consensus size: 43
13934210 CAACTGATGG
13934220 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
1 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
* * * * * * * * *
13934263 AGGCAA-GATCTGCTATCTTTGACCAGCTCCACTG-CAACCGATA-G-
1 AGGCAAGGTTTTG-T-T-TTCGATCTGCTTCGCTGTTAA-TG-TAGGA
*
13934307 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
13934350 AGGCAAG
1 AGGCAAG
13934357 ATCTGCTATC
Statistics
Matches: 66, Mismatches: 19, Indels: 18
0.64 0.18 0.17
Matches are distributed among these distances:
41 1 0.02
42 18 0.27
43 17 0.26
44 10 0.15
45 18 0.27
46 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (43 bp):
AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
Found at i:13934757 original size:87 final size:87
Alignment explanation
Indices: 13933798--13934747 Score: 1407
Period size: 87 Copynumber: 10.9 Consensus size: 87
13933788 GACTGGCTTC
* * * * *
13933798 TTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
13933863 CCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
*
13933885 TTCGATCTGCTTCGCTATTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
13933950 CCGATGAAGGTAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * * * **
13933972 TTTGATCTGCTTTGCTGTTAATGCAGGAAGGCAAGATCTACTATTTTTAACCAGCTCCACTATAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
13934037 CCGA-GAGAGGCAAGGTTTGTGTT
66 CCGATG-GAGGCAAGGTTT-TGTT
* * * ** * *
13934060 TTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTATTGTCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* * *
13934125 ACGAGGGAGGCAAGGTTTGTGTC
66 CCGATGGAGGCAAGGTTT-TGTT
* * * * * *
13934148 TTCAATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
13934213 CTGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* *
13934235 TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCTATCTTTGACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
13934300 CCGATAGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
*
13934322 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTGACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
13934387 CCGATGGAGGCAATGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * * *
13934409 TTCGATCTGCTTCACTATTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAG
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
13934474 CCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * * * *
13934496 TTTGATTTGCTTCACTGTTAATGCAGGAAGGCAATATCTGCTATCTTTAACCAGCTCCACTGCAG
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
13934561 TCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
*
13934583 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAG
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
13934648 CCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * *
13934670 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGTAAGATCTACTATCTTTGACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
13934735 CTGATGGAGGCAA
66 CCGATGGAGGCAA
13934748 TGATCTGTTT
Statistics
Matches: 788, Mismatches: 72, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
86 1 0.00
87 632 0.80
88 154 0.20
89 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGTTTTGTT
Found at i:13935381 original size:108 final size:108
Alignment explanation
Indices: 13935192--13935387 Score: 311
Period size: 108 Copynumber: 1.8 Consensus size: 108
13935182 GAAAAATGCT
* *
13935192 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTATTGAGAGCAAAGCTCTAAACAAACAAAT
*
13935257 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGATAACAAATTTTGCTGAGATACGAGATGTATAAGA
* * * **
13935300 TGAAAAAGATTATCACAATGGATAAGATGAAAATTTATTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTATTGAGAGCAAAGCTCTAAACAAACAAAT
*
13935365 TAATCAAGATAACAAATTTTGCT
66 CAATCAAGATAACAAATTTTGCT
13935388 AGAATACAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 79 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTATTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAACAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:13935451 original size:45 final size:43
Alignment explanation
Indices: 13935353--13935453 Score: 103
Period size: 45 Copynumber: 2.3 Consensus size: 43
13935343 GCAAAGCTCT
* *
13935353 AAATGAACAAATTAATCAAGATAACAAATTTTGCTAGAATACA
1 AAATGAATAAATTAATCAAGATAACAAATTTTGCTAAAATACA
** ** *
13935396 AAATGAGAATAAATTAATCAAGATGGCGTATTTTGTTAAAAATACAA
1 AAAT--GAATAAATTAATCAAGATAACAAATTTTGCT-AAAATAC-A
13935443 AAATGAATAAA
1 AAATGAATAAA
13935454 ATTGAAATAG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.09
45 32 0.68
46 6 0.13
47 5 0.11
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (43 bp):
AAATGAATAAATTAATCAAGATAACAAATTTTGCTAAAATACA
Found at i:13935741 original size:13 final size:12
Alignment explanation
Indices: 13935723--13935782 Score: 54
Period size: 13 Copynumber: 5.0 Consensus size: 12
13935713 TGGCCTCTCT
13935723 TTTTTCTCTTTTC
1 TTTTTCT-TTTTC
13935736 TTTTTCATTTTTC
1 TTTTTC-TTTTTC
*
13935749 TTTTCCTTTTT-
1 TTTTTCTTTTTC
*
13935760 TCTTTT-TGTTTC
1 T-TTTTCTTTTTC
13935772 TTTTT-TTTTTC
1 TTTTTCTTTTTC
13935783 AAGTGAAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 14 0.35
12 9 0.22
13 16 0.40
14 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTTCTTTTTC
Found at i:13935752 original size:18 final size:17
Alignment explanation
Indices: 13935724--13935782 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 17
13935714 GGCCTCTCTT
13935724 TTTTCTCTTTTCTTTTTC
1 TTTT-TCTTTTCTTTTTC
13935742 ATTTTTCTTTTCCTTTTTTC
1 -TTTTTCTTTT-C-TTTTTC
*
13935762 TTTTT-GTTTCTTTTT-
1 TTTTTCTTTTCTTTTTC
13935777 TTTTTC
1 TTTTTC
13935783 AAGTGAAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 5 0.14
16 5 0.14
17 1 0.03
18 9 0.25
19 10 0.28
20 6 0.17
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTTC
Found at i:13935766 original size:7 final size:7
Alignment explanation
Indices: 13935720--13935766 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
13935710 CCTTGGCCTC
13935720 TCTTTTT
1 TCTTTTT
*
13935727 TCTCTTT
1 TCTTTTT
13935734 TC-TTTT
1 TCTTTTT
*
13935740 TCATTTT
1 TCTTTTT
13935747 TC-TTTT
1 TCTTTTT
*
13935753 CCTTTTT
1 TCTTTTT
13935760 TCTTTTT
1 TCTTTTT
13935767 GTTTCTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 10 0.29
7 24 0.71
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (7 bp):
TCTTTTT
Found at i:13936237 original size:15 final size:15
Alignment explanation
Indices: 13936217--13936268 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
13936207 CCGGTAGAGG
13936217 TTTTTTTCTTTTATT
1 TTTTTTTCTTTTATT
13936232 TTTTTTTCTTTTATT
1 TTTTTTTCTTTTATT
* *
13936247 TTTGTTT-TTTTGTT
1 TTTTTTTCTTTTATT
13936261 GTTTTTTT
1 -TTTTTTT
13936269 GTTGTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 6 0.18
15 27 0.82
ACGTcount: A:0.04, C:0.04, G:0.06, T:0.87
Consensus pattern (15 bp):
TTTTTTTCTTTTATT
Found at i:13936248 original size:20 final size:20
Alignment explanation
Indices: 13936231--13936278 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
13936221 TTTCTTTTAT
13936231 TTTTTTTTCTTTTATTTTTG
1 TTTTTTTTCTTTTATTTTTG
*
13936251 TTTTTTTGT-TGTT-TTTTTG
1 TTTTTTT-TCTTTTATTTTTG
13936270 TTGTTTTTT
1 TT-TTTTTT
13936279 TGCCTCCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.36
20 15 0.60
21 1 0.04
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.85
Consensus pattern (20 bp):
TTTTTTTTCTTTTATTTTTG
Found at i:13936262 original size:11 final size:11
Alignment explanation
Indices: 13936230--13936280 Score: 70
Period size: 11 Copynumber: 4.7 Consensus size: 11
13936220 TTTTCTTTTA
*
13936230 TTTTTTT-TTC
1 TTTTTTTGTTG
13936240 TTTTATTT-TTG
1 TTTT-TTTGTTG
13936251 TTTTTTTGTTG
1 TTTTTTTGTTG
13936262 TTTTTTTGTTG
1 TTTTTTTGTTG
13936273 TTTTTTTG
1 TTTTTTTG
13936281 CCTCCACTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
10 7 0.18
11 31 0.82
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (11 bp):
TTTTTTTGTTG
Found at i:13936268 original size:14 final size:13
Alignment explanation
Indices: 13936216--13936279 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 13
13936206 CCCGGTAGAG
13936216 GTTTTTTTCTTTTAT
1 GTTTTTTT-TTTT-T
13936231 -TTTTTTTTCTTTT
1 GTTTTTTTT-TTTT
*
13936244 ATTTTTGTTTTTTT
1 GTTTTT-TTTTTTT
*
13936258 GTTGTTTTTTTGTT
1 GTT-TTTTTTTTTT
13936272 GTTTTTTT
1 GTTTTTTT
13936280 GCCTCCACTG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
13 7 0.16
14 30 0.70
15 6 0.14
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.84
Consensus pattern (13 bp):
GTTTTTTTTTTTT
Found at i:13947407 original size:9 final size:9
Alignment explanation
Indices: 13947393--13947465 Score: 65
Period size: 9 Copynumber: 7.7 Consensus size: 9
13947383 ACTTATTTTT
13947393 ATTTTTAAA
1 ATTTTTAAA
13947402 ATTTTTAAATA
1 ATTTTT-AA-A
*
13947413 ATTTTTACA
1 ATTTTTAAA
13947422 ATTTTTATAA
1 ATTTTTA-AA
*
13947432 ATTTTTATA
1 ATTTTTAAA
* *
13947441 AGTTTTATA
1 ATTTTTAAA
*
13947450 AGTTTTAAA
1 ATTTTTAAA
13947459 AGTTTTT
1 A-TTTTT
13947466 CTAATATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
9 32 0.59
10 15 0.28
11 7 0.13
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:13947427 original size:10 final size:10
Alignment explanation
Indices: 13947393--13947476 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 10
13947383 ACTTATTTTT
13947393 ATTTTTA-AA
1 ATTTTTATAA
*
13947402 ATTTTTAAATA
1 ATTTTTATA-A
*
13947413 ATTTTTA-CA
1 ATTTTTATAA
13947422 ATTTTTATAA
1 ATTTTTATAA
13947432 ATTTTTAT-A
1 ATTTTTATAA
*
13947441 AGTTTTAT-A
1 ATTTTTATAA
*
13947450 AGTTTTA-AA
1 ATTTTTATAA
*
13947459 AGTTTTTCTAA
1 A-TTTTTATAA
13947470 TATTTTT
1 -ATTTTT
13947477 TTATAAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
9 33 0.52
10 14 0.22
11 15 0.24
12 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:13947434 original size:19 final size:19
Alignment explanation
Indices: 13947393--13947476 Score: 80
Period size: 19 Copynumber: 4.3 Consensus size: 19
13947383 ACTTATTTTT
*
13947393 ATTTTTAAAATTTTTAAATA
1 ATTTTTAAAATTTTTATA-A
*
13947413 ATTTTTACAATTTTTATAA
1 ATTTTTAAAATTTTTATAA
* *
13947432 ATTTTTATAAGTTTTAT-A
1 ATTTTTAAAATTTTTATAA
* *
13947450 AGTTTTAAAAGTTTTTCTAA
1 ATTTTTAAAA-TTTTTATAA
13947470 TATTTTT
1 -ATTTTT
13947477 TTATAAAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
18 9 0.17
19 21 0.40
20 17 0.33
21 5 0.10
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTTTAAAATTTTTATAA
Found at i:13947578 original size:11 final size:10
Alignment explanation
Indices: 13947515--13947590 Score: 56
Period size: 10 Copynumber: 8.1 Consensus size: 10
13947505 TTTCTTTTCA
*
13947515 TTTATATAAT
1 TTTATATATT
*
13947525 TTTGTA-ATT
1 TTTATATATT
13947534 TTTATA-A--
1 TTTATATATT
13947541 TTTATATATT
1 TTTATATATT
*
13947551 TATT-TCTATT
1 T-TTATATATT
13947561 TTTATATATT
1 TTTATATATT
13947571 TTTA-ATATT
1 TTTATATATT
* *
13947580 TATATACATT
1 TTTATATATT
13947590 T
1 T
13947591 GATAAAAGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
7 6 0.11
8 1 0.02
9 18 0.34
10 26 0.49
11 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTATATATT
Found at i:13950381 original size:45 final size:45
Alignment explanation
Indices: 13950276--13950404 Score: 179
Period size: 45 Copynumber: 2.9 Consensus size: 45
13950266 TCCAAATTTA
* *
13950276 CAGACAAGCTACCATGTAGGTTGTGGA-TAAACTACCAATATTCG
1 CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAATATTCG
* * * *
13950320 TAGGCAAGCTATCATGTAGGTTATGGACGAAACCACCAATATTCG
1 CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAATATTCG
* *
13950365 CAGACAAGTTGCCATGTAGGTTGTGGACGAAACCACCAAT
1 CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAAT
13950405 TCTTCTCATT
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 23 0.32
45 49 0.68
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (45 bp):
CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAATATTCG
Found at i:13951855 original size:15 final size:16
Alignment explanation
Indices: 13951835--13951865 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
13951825 AGGGAAATGG
13951835 AAAAAAAGAAA-GAAA
1 AAAAAAAGAAATGAAA
13951850 AAAAAAAGAAATGAAA
1 AAAAAAAGAAATGAAA
13951866 TGAATGTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAAAAGAAATGAAA
Found at i:13956074 original size:12 final size:12
Alignment explanation
Indices: 13956059--13956083 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13956049 ACTTTCCACC
13956059 ACAATCATCAGA
1 ACAATCATCAGA
13956071 ACAATCATCAGA
1 ACAATCATCAGA
13956083 A
1 A
13956084 ACTCCCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
ACAATCATCAGA
Found at i:13956965 original size:20 final size:22
Alignment explanation
Indices: 13956928--13956967 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
13956918 ACTGCCCAAC
*
13956928 AAAGAAGAAAAGGCATTTTCGT
1 AAAGAAGAAAAAGCATTTTCGT
13956950 AAAGAA-AAAAAG-ATTTTC
1 AAAGAAGAAAAAGCATTTTC
13956968 CCGAGTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.53, C:0.07, G:0.17, T:0.23
Consensus pattern (22 bp):
AAAGAAGAAAAAGCATTTTCGT
Found at i:13960991 original size:12 final size:12
Alignment explanation
Indices: 13960974--13961028 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
13960964 GCAGTCATCC
13960974 TTTCTTCTTCTT
1 TTTCTTCTTCTT
*
13960986 TTTCTTTTTCTT
1 TTTCTTCTTCTT
*
13960998 TTCCTTCTTC--
1 TTTCTTCTTCTT
* *
13961008 CTTCTTCTTTTT
1 TTTCTTCTTCTT
13961020 TTTCTTCTT
1 TTTCTTCTT
13961029 TCAATAATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
10 7 0.21
12 27 0.79
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTCTTCTTCTT
Found at i:13961012 original size:22 final size:22
Alignment explanation
Indices: 13960987--13961028 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13960977 CTTCTTCTTT
13960987 TTCTT-TTTCTTTTCCTTCTTCC
1 TTCTTCTTT-TTTTCCTTCTTCC
*
13961009 TTCTTCTTTTTTTTCTTCTT
1 TTCTTCTTTTTTTCCTTCTT
13961029 TCAATAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (22 bp):
TTCTTCTTTTTTTCCTTCTTCC
Found at i:13968492 original size:31 final size:33
Alignment explanation
Indices: 13968464--13968528 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
13968454 AAAATATAGT
13968464 AAAT-AAA-ATTTTTTAA-ATAATTTAATATAA
1 AAATAAAAGATTTTTTAATATAATTTAATATAA
13968494 AAATAAAAGATTTTTTAATATAATTTAATATAA
1 AAATAAAAGATTTTTTAATATAATTTAATATAA
13968527 AA
1 AA
13968529 TAATTATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 4 0.12
31 3 0.09
32 9 0.28
33 16 0.50
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (33 bp):
AAATAAAAGATTTTTTAATATAATTTAATATAA
Found at i:13968843 original size:16 final size:16
Alignment explanation
Indices: 13968822--13968872 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
13968812 TGAATTACTG
13968822 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
13968838 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
13968854 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTCC
13968870 ATT
1 ATT
13968873 CCACTGAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:13973023 original size:44 final size:45
Alignment explanation
Indices: 13972912--13973026 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
13972902 TAATTTATAG
* *
13972912 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCTGATAT
* * * *
13972957 TTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA-CTGATGA-
1 CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCTGAT-AT
*
13973001 CTTCAATCTGTTCCACTACAACTTCA
1 CTTCAATCTGTTCCACTGCAACTTCA
13973027 AAAAGATAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 25 0.42
45 34 0.58
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (45 bp):
CTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCTGATAT
Found at i:13973123 original size:143 final size:143
Alignment explanation
Indices: 13972902--13973680 Score: 1013
Period size: 143 Copynumber: 5.4 Consensus size: 143
13972892 ATAAGATCTG
* * * ** * * * * *
13972902 TAATTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATTTTCAATCTG
1 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
** * * * * *
13972967 CTCCACTGCAACTTTAGGGAGATAAGACTGATGACTTCAATCTGTTCCACTACAACTTCAAAAAG
66 CTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
* *
13973032 ATAAGATTCACCA
131 ATAAGATCCGCCA
* * * * *
13973045 TAATTTTTAGCTTTAATATGTTCCACTGTAACGCTAGGGAAATAAGATTCGCTGTCTTCAGTCTA
1 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
* * *
13973110 CTCTGCTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAG
66 CTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
13973175 ATAAGATCCGCCA
131 ATAAGATCCGCCA
* *
13973188 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTTGATGTCTTCAGTCTG
1 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
* * * * ** *
13973253 CTCTGCTACAACTTCAGGAAGATAAGGCTGGTGGCTTCAATCTGTTCCACTGTAACTTCGAGAAG
66 CTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
13973318 ATAAGATCCGCCA
131 ATAAGATCCGCCA
* * *
13973331 TAATTTGTAGTTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGTTGTCTTCAGTCTG
1 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
* * * **
13973396 CT-TCGCTGCCACTTCT-GAGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCTGGA
66 CTCT-GCTGCAACTT-TAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGA
*
13973459 AGATAAGATCCGCTA
129 AGATAAGATCCGCCA
* * * *
13973474 TAATTTGTAGCTTTAATCTATTCCACTGTAACGCCAGGAAAATAAGATTCGTTGTCTTCAGTCTG
1 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
* * * * *
13973539 CTCCGCTACAACTTTAGGGAGATAAGACTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAA
66 CTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
*
13973604 ATAAGATCTGCCA
131 ATAAGATCCGCCA
* *
13973617 TAATTTGTATCTTTAATATGTTCCACTGCAACGCAAGGGAAATAAGATTCGTTGTCTTCAGTCT
1 TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCT
13973681 AGAGGTGCTC
Statistics
Matches: 560, Mismatches: 72, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
142 2 0.00
143 558 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (143 bp):
TAATTTGTAGCTTTAATATGTTCCACTGCAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTG
CTCTGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAAGAAG
ATAAGATCCGCCA
Found at i:13973608 original size:44 final size:45
Alignment explanation
Indices: 13973508--13973609 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 45
13973498 ACTGTAACGC
* * * * *
13973508 CAGGAAAATAAGATTCGTTGTCTTCAGTCTGCTCCGCTACAACTT
1 CAGGAAAATAAGACTCGGTGGCTTCAATCTGCTCCACTACAACTT
* * *
13973553 TAGGGAGATAAGACT-GGTGGCTTCAATCTGCTCCACTACAACTT
1 CAGGAAAATAAGACTCGGTGGCTTCAATCTGCTCCACTACAACTT
13973597 CAGGAAAATAAGA
1 CAGGAAAATAAGA
13973610 TCTGCCATAA
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
44 35 0.76
45 11 0.24
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (45 bp):
CAGGAAAATAAGACTCGGTGGCTTCAATCTGCTCCACTACAACTT
Found at i:13973900 original size:39 final size:39
Alignment explanation
Indices: 13973836--13973936 Score: 143
Period size: 37 Copynumber: 2.6 Consensus size: 39
13973826 ACCAAAATTT
*
13973836 TATTTTAAAAATAAAAAAATTAAAAAAAAGTACTTTAAAAA
1 TATTTT-AAAATTAAAAAA-TAAAAAAAAGTACTTTAAAAA
*
13973877 TA-TTTAAAATTAAAAAAT-AAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAAAAAAAAGTACTTTAAAAA
13973914 TATTTTAAAATTTAAAAAATAAA
1 TATTTTAAAA-TTAAAAAATAAA
13973937 TATATTTATT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
37 20 0.36
38 8 0.15
39 20 0.36
40 5 0.09
41 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (39 bp):
TATTTTAAAATTAAAAAATAAAAAAAAGTACTTTAAAAA
Found at i:13973910 original size:37 final size:38
Alignment explanation
Indices: 13973836--13973936 Score: 141
Period size: 39 Copynumber: 2.6 Consensus size: 38
13973826 ACCAAAATTT
*
13973836 TATTTTAAAAATAAAAAAATTAAAAAAAAGTACTTTAAAAA
1 TATTTT-AAAATTAAAAAA-T-AAAAAAAGTACTTTAAAAA
*
13973877 TA-TTTAAAATTAAAAAATAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAAAAAAAGTACTTTAAAAA
13973914 TATTTTAAAATTTAAAAAATAAA
1 TATTTTAAAA-TTAAAAAATAAA
13973937 TATATTTATT
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
37 20 0.36
38 8 0.14
39 23 0.41
40 3 0.05
41 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (38 bp):
TATTTTAAAATTAAAAAATAAAAAAAGTACTTTAAAAA
Found at i:13974382 original size:143 final size:143
Alignment explanation
Indices: 13974115--13974538 Score: 670
Period size: 143 Copynumber: 3.0 Consensus size: 143
13974105 AGCACCTCTA
* *
13974115 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGACTTCAATCTGTTCCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
* * * * *
13974180 CTTCAGGAAAATAAGATCCGCCACAATTTGTAGCTTTAATTTGTTCCACTACAATGCTAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
13974245 TAAGATTCAATGT
131 TAAGATTCAATGT
* *
13974258 CTTCAGTCTGCTCCACTGCAATTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
*
13974323 CTTCAGGAAGATAAGATCCGTCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
***
13974388 TAAGATTTGCTGT
131 TAAGATTCAATGT
* * *
13974401 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATCTACTCCACTACAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
* *
13974466 CTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCT-GGGAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACG-CTAAGGAA
13974530 ATAAGATTC
130 ATAAGATTC
13974539 GCTATGATGA
Statistics
Matches: 258, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
143 256 0.99
144 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (143 bp):
CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
TAAGATTCAATGT
Found at i:13975443 original size:20 final size:20
Alignment explanation
Indices: 13975421--13975458 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13975411 TGGCCTCTCT
13975421 TTTTCCTTT-TTTGTTTTTC
1 TTTTCCTTTCTTTGTTTTTC
*
13975440 TTTTCTTTTCTTTGTTTTT
1 TTTTCCTTTCTTTGTTTTT
13975459 TTTAAGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (20 bp):
TTTTCCTTTCTTTGTTTTTC
Found at i:13978057 original size:19 final size:19
Alignment explanation
Indices: 13978035--13978074 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
13978025 TGTAAAATTT
*
13978035 AATGCATATG-ATGAAATGC
1 AATGCAGATGCATG-AATGC
13978054 AATGCAGATGCATGAATGC
1 AATGCAGATGCATGAATGC
13978073 AA
1 AA
13978075 AAAAAGGCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (19 bp):
AATGCAGATGCATGAATGC
Found at i:13983632 original size:19 final size:20
Alignment explanation
Indices: 13983608--13983651 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
13983598 TATATAAATA
* *
13983608 ATATAATAAATATGTA-ATT
1 ATATAATAAAAATATATATT
13983627 ATATAATAAAAATATATATT
1 ATATAATAAAAATATATATT
13983647 ATATA
1 ATATA
13983652 TATCATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
ATATAATAAAAATATATATT
Found at i:13984048 original size:45 final size:45
Alignment explanation
Indices: 13983993--13984093 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
13983983 TTTGTATGTG
* * * *
13983993 TATTTAAAATAATTATTTGAAATATTTAACATATAAACATAATGA
1 TATTTGAAATAATTAATTGAAATATTTAACATATAAAAATAATAA
* * *
13984038 TATTTGAAATAATTAATTGAAATTTTTCATATATAAAAATAATAA
1 TATTTGAAATAATTAATTGAAATATTTAACATATAAAAATAATAA
13984083 TATTTGAAATA
1 TATTTGAAATA
13984094 TTTTACATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (45 bp):
TATTTGAAATAATTAATTGAAATATTTAACATATAAAAATAATAA
Found at i:13984104 original size:32 final size:32
Alignment explanation
Indices: 13984045--13984115 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
13984035 TGATATTTGA
*
13984045 AATAATTAATTGAAATTTTTCATATATAAAAAT
1 AATAA-TAATTGAAATTTTTCACATATAAAAAT
*
13984078 AATAATATTTGAAATATTTT-ACATATAAAAAT
1 AATAATAATTGAAAT-TTTTCACATATAAAAAT
13984110 AATAAT
1 AATAAT
13984116 GATGTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 26 0.74
33 9 0.26
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (32 bp):
AATAATAATTGAAATTTTTCACATATAAAAAT
Found at i:13984476 original size:15 final size:16
Alignment explanation
Indices: 13984438--13984468 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13984428 AATTAAAAAG
*
13984438 ATAAATTAAAAATAAA
1 ATAATTTAAAAATAAA
13984454 ATAATTTAAAAATAA
1 ATAATTTAAAAATAA
13984469 CATGTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAATTTAAAAATAAA
Found at i:13992681 original size:25 final size:25
Alignment explanation
Indices: 13992604--13992683 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
13992594 GACACACCAT
*
13992604 AGCTCTTATGAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCTC
* * *
13992629 AACTCGTATAAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCTC
*
13992654 AGCTCATATGAGCTTACCGATTCAC
1 AGCTCATATGAGCTTACCGATTCTC
13992679 AGCTC
1 AGCTC
13992684 GCAAAAGCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (25 bp):
AGCTCATATGAGCTTACCGATTCTC
Found at i:13992716 original size:50 final size:50
Alignment explanation
Indices: 13992604--13992701 Score: 133
Period size: 50 Copynumber: 2.0 Consensus size: 50
13992594 GACACACCAT
* * * * *
13992604 AGCTCTTATGAGCTTACCGATTCTCAACTCGTATAAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCACAACTCGCAAAAGCATACCGATTCTC
* *
13992654 AGCTCATATGAGCTTACCGATTCACAGCTCGCAAAAGCATACTGATTC
1 AGCTCATATGAGCTTACCGATTCACAACTCGCAAAAGCATACCGATTC
13992702 ATAGTTTGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (50 bp):
AGCTCATATGAGCTTACCGATTCACAACTCGCAAAAGCATACCGATTCTC
Found at i:13996772 original size:40 final size:39
Alignment explanation
Indices: 13996707--13996884 Score: 151
Period size: 40 Copynumber: 4.4 Consensus size: 39
13996697 ACTATGTTTA
* ** *
13996707 GCACTTAGTGTACGATCCGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGATTAGA-ATAGCTTCGGCTATATATG
*
13996747 GCACTTAGTGTGCGATTAGGAATAGCTTCGGCCATATATG
1 GCACTTAGTGTGCGATTA-GAATAGCTTCGGCTATATATG
* * * * *
13996787 GCACTTACTGTGCGA-AACTGAGATAGCTTTGGCTATGTAAG
1 GCACTTAGTGTGCGATTA--GA-ATAGCTTCGGCTATATATG
* **
13996828 GCACTTAGTGTGCGGGATTATAATAGCTTCGGCTATGCGATG
1 GCACTTAGTGTGC--GATTAGAATAGCTTCGGCTAT-ATATG
*
13996870 GCATTTAGTGTGCGA
1 GCACTTAGTGTGCGA
13996885 AACATTGAGT
Statistics
Matches: 111, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
39 1 0.01
40 50 0.45
41 42 0.38
42 15 0.14
43 2 0.02
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (39 bp):
GCACTTAGTGTGCGATTAGAATAGCTTCGGCTATATATG
Found at i:14002997 original size:25 final size:25
Alignment explanation
Indices: 14002938--14002998 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
14002928 CTCCTAAATT
*
14002938 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
* *
14002963 TTTATAAAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
14002988 TTAATTAAATT
1 TTAATTAAATT
14002999 TTTGAGAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:14009015 original size:26 final size:27
Alignment explanation
Indices: 14008986--14009037 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
14008976 GTTATATATT
*
14008986 AAATAT-ATATTT-TTTTATTTTTAATC
1 AAATATAAT-TTTGTTTTATTATTAATC
14009012 AAATATAATTTTGTTTTATTATTAAT
1 AAATATAATTTTGTTTTATTATTAAT
14009038 TTGGCTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
AAATATAATTTTGTTTTATTATTAATC
Found at i:14027494 original size:13 final size:13
Alignment explanation
Indices: 14027461--14027494 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
14027451 AATTCTGACG
14027461 TCGATTTTCTTCT
1 TCGATTTTCTTCT
14027474 TC-ACTTTTCTTCT
1 TCGA-TTTTCTTCT
14027487 TCGATTTT
1 TCGATTTT
14027495 TCGCGGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 17 0.89
14 1 0.05
ACGTcount: A:0.09, C:0.24, G:0.06, T:0.62
Consensus pattern (13 bp):
TCGATTTTCTTCT
Found at i:14029579 original size:18 final size:18
Alignment explanation
Indices: 14029535--14029582 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
14029525 GCAATAAAAA
14029535 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAATTGAAT
* *
14029553 AACGATTTGTAAA-TGAAT
1 AATGTTTTG-AAATTGAAT
14029571 AATGTTTTGAAA
1 AATGTTTTGAAA
14029583 ACGAACGACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 19 0.76
19 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (18 bp):
AATGTTTTGAAATTGAAT
Found at i:14030867 original size:20 final size:20
Alignment explanation
Indices: 14030842--14030886 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
14030832 TGGTAACAAA
14030842 TATTATGTAATAGATATATT
1 TATTATGTAATAGATATATT
14030862 TATTATGTAATAGATATATT
1 TATTATGTAATAGATATATT
14030882 TATTA
1 TATTA
14030887 AAAATTCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (20 bp):
TATTATGTAATAGATATATT
Found at i:14033313 original size:34 final size:33
Alignment explanation
Indices: 14033271--14033337 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
14033261 ATTTGGGTTG
* *
14033271 GTTTGGGTTTGAAA-CTGATTCGAGAATCGATTA
1 GTTTGGGTTAGAAATC-GATTCAAGAATCGATTA
*
14033304 GTTTAGGGTTAGAAATCGATTCAATAATCGATTA
1 GTTT-GGGTTAGAAATCGATTCAAGAATCGATTA
14033338 ACAAGGTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 4 0.14
34 24 0.83
35 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (33 bp):
GTTTGGGTTAGAAATCGATTCAAGAATCGATTA
Found at i:14033551 original size:6 final size:6
Alignment explanation
Indices: 14033536--14033689 Score: 115
Period size: 6 Copynumber: 25.7 Consensus size: 6
14033526 ATTTTGGGTT
* * *
14033536 ATTTCA ATTTCG ATTTCA ATTTTG ATTTCG ATTAT-G ATTAT-G ATTTCG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATT-TCG ATT-TCG ATTTCG
* *
14033584 ATTTCG ATTTCG ATTTTG ATTTCG ATTTTG ATTTCG A-TTCTG A-TTCTG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTC-G ATTTC-G
* * *
14033632 A-TTCTG A-TTCTG A-TTCTG ATTTAG ATTTAG ATTTTG ATTTCG ATTTCG
1 ATTTC-G ATTTC-G ATTTC-G ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
*
14033680 ATTTTG ATTT
1 ATTTCG ATTT
14033690 TAATTTAGGG
Statistics
Matches: 131, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
5 4 0.03
6 124 0.95
7 3 0.02
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (6 bp):
ATTTCG
Found at i:14033690 original size:6 final size:6
Alignment explanation
Indices: 14033554--14033695 Score: 122
Period size: 6 Copynumber: 23.7 Consensus size: 6
14033544 TTCGATTTCA
* * * * * *
14033554 ATTTTG ATTTCG ATTATG ATTATG ATTTCG ATTTCG ATTTCG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* * * * * * *
14033602 ATTTCG ATTTTG ATTTCG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* * * * *
14033650 ATTTAG ATTTAG ATTTTG ATTTCG ATTTCG ATTTTG ATTTTA ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTT
14033696 AGGGTTATTT
Statistics
Matches: 119, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 119 1.00
ACGTcount: A:0.20, C:0.09, G:0.15, T:0.55
Consensus pattern (6 bp):
ATTTTG
Found at i:14033695 original size:18 final size:18
Alignment explanation
Indices: 14033542--14033689 Score: 160
Period size: 18 Copynumber: 8.2 Consensus size: 18
14033532 GGTTATTTCA
*
14033542 ATTTCGATTTCAATTTTG
1 ATTTCGATTTCGATTTTG
*
14033560 ATTTCGATTAT-GATTATG
1 ATTTCGATT-TCGATTTTG
*
14033578 ATTTCGATTTCGATTTCG
1 ATTTCGATTTCGATTTTG
*
14033596 ATTTTGATTTCGATTTTG
1 ATTTCGATTTCGATTTTG
*
14033614 ATTTCGA-TTCTGATTCTG
1 ATTTCGATTTC-GATTTTG
*
14033632 A-TTCTGA-TTCTGATTCTG
1 ATTTC-GATTTC-GATTTTG
* *
14033650 ATTTAGATTTAGATTTTG
1 ATTTCGATTTCGATTTTG
14033668 ATTTCGATTTCGATTTTG
1 ATTTCGATTTCGATTTTG
14033686 ATTT
1 ATTT
14033690 TAATTTAGGG
Statistics
Matches: 111, Mismatches: 13, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
17 7 0.06
18 99 0.89
19 5 0.05
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.54
Consensus pattern (18 bp):
ATTTCGATTTCGATTTTG
Found at i:14034065 original size:62 final size:61
Alignment explanation
Indices: 14033968--14034104 Score: 238
Period size: 62 Copynumber: 2.2 Consensus size: 61
14033958 GTTAAAATAT
*
14033968 TTGGTTATTGCCTGCCACGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
1 TTGGTTATTGTCTGCCACGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTA-TTTTGTA
*
14034030 TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTGTA
1 TTGGTTATTGTCTGCCACGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTGTA
*
14034091 TTTGTTATTGTCTG
1 TTGGTTATTGTCTG
14034105 ATAGAAATGG
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
61 20 0.28
62 52 0.72
ACGTcount: A:0.23, C:0.09, G:0.21, T:0.47
Consensus pattern (61 bp):
TTGGTTATTGTCTGCCACGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTGTA
Found at i:14036063 original size:95 final size:95
Alignment explanation
Indices: 14035910--14036211 Score: 496
Period size: 95 Copynumber: 3.2 Consensus size: 95
14035900 GAATGTTTTT
* *
14035910 TAATATGCATGCAATGATTGTTGGTGTGTATGACTATTTTTTAATATACATGTTGTTGACTATTT
1 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
14035975 TTTAATATGCATGCAGTGAGTATTTTTTAA
66 TTTAATATGCATGCAGTGAGTATTTTTTAA
*
14036005 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCAGTTGACTATTT
1 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
14036070 TTTAATATGCATGCAGTGAGTATTTTTTAA
66 TTTAATATGCATGCAGTGAGTATTTTTTAA
* * * * * *
14036100 CAATATGCATGCAGTGATTGTCGGTGTGTATGATTGTTTTTTAATATACATACTTTTGACTATTT
1 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
* *
14036165 TTTAATATGAATGCAATGAGTATTTTTTAA
66 TTTAATATGCATGCAGTGAGTATTTTTTAA
*
14036195 TAATATGCATGTAGTGA
1 TAATATGCATGCAGTGA
14036212 CTGCTTTTTA
Statistics
Matches: 193, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 193 1.00
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (95 bp):
TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
TTTAATATGCATGCAGTGAGTATTTTTTAA
Found at i:14036071 original size:26 final size:25
Alignment explanation
Indices: 14036035--14036099 Score: 103
Period size: 26 Copynumber: 2.6 Consensus size: 25
14036025 TTGGTGTGTA
14036035 TGACTATTTTTTAATATACATGCAG
1 TGACTATTTTTTAATATACATGCAG
*
14036060 TTGACTATTTTTTAATATGCATGCAG
1 -TGACTATTTTTTAATATACATGCAG
*
14036086 TGAGTATTTTTTAA
1 TGACTATTTTTTAA
14036100 CAATATGCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 13 0.35
26 24 0.65
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (25 bp):
TGACTATTTTTTAATATACATGCAG
Found at i:14036116 original size:28 final size:25
Alignment explanation
Indices: 14035940--14036021 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 25
14035930 TTGGTGTGTA
* **
14035940 TGACTATTTTTTAATATACATGTTG
1 TGACTATTTTTTAATATGCATGCAG
14035965 TTGACTATTTTTTAATATGCATGCAG
1 -TGACTATTTTTTAATATGCATGCAG
*
14035991 TGAGTATTTTTTAATAATATGCATGCAG
1 TGACTA-TTTTT--TAATATGCATGCAG
14036019 TGA
1 TGA
14036022 TTGTTGGTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.10
26 27 0.55
28 17 0.35
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.46
Consensus pattern (25 bp):
TGACTATTTTTTAATATGCATGCAG
Found at i:14036949 original size:18 final size:18
Alignment explanation
Indices: 14036893--14036952 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
14036883 CCCAAATTAG
*
14036893 CAACAGGCTACCCCAAAT
1 CAACAGGCTACCCCAACT
* * *
14036911 CAGCAAGAGAGTACCCTAACT
1 CAAC-AG-G-CTACCCCAACT
14036932 CAACAGGCTACCCCAACT
1 CAACAGGCTACCCCAACT
14036950 CAA
1 CAA
14036953 TTACAAACTG
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
18 15 0.47
19 3 0.09
20 3 0.09
21 11 0.34
ACGTcount: A:0.38, C:0.37, G:0.13, T:0.12
Consensus pattern (18 bp):
CAACAGGCTACCCCAACT
Found at i:14036968 original size:21 final size:22
Alignment explanation
Indices: 14036942--14036993 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
14036932 CAACAGGCTA
*
14036942 CCCCAACTCAAT-TACAAACTG
1 CCCCAACTCAATCAACAAACTG
*
14036963 CCCCAACTC-ATCAACAAGCTG
1 CCCCAACTCAATCAACAAACTG
14036984 CCCCAACTCA
1 CCCCAACTCA
14036994 CCAAAAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.35, C:0.44, G:0.06, T:0.15
Consensus pattern (22 bp):
CCCCAACTCAATCAACAAACTG
Found at i:14037013 original size:24 final size:21
Alignment explanation
Indices: 14036960--14037001 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14036950 CAATTACAAA
* *
14036960 CTGCCCCAACTCATCAACAAG
1 CTGCCCCAACTCACCAAAAAG
14036981 CTGCCCCAACTCACCAAAAAG
1 CTGCCCCAACTCACCAAAAAG
14037002 ATGCTGCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.43, G:0.10, T:0.12
Consensus pattern (21 bp):
CTGCCCCAACTCACCAAAAAG
Found at i:14037436 original size:23 final size:24
Alignment explanation
Indices: 14037405--14037450 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14037395 TTCTAACATA
*
14037405 TGAGTATTGA-AAAAACAAATGTG
1 TGAGAATTGAGAAAAACAAATGTG
*
14037428 TGAGAATTGAGAAATACAAATGT
1 TGAGAATTGAGAAAAACAAATGT
14037451 TTCTTTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.48, C:0.04, G:0.22, T:0.26
Consensus pattern (24 bp):
TGAGAATTGAGAAAAACAAATGTG
Found at i:14037734 original size:36 final size:36
Alignment explanation
Indices: 14037687--14037765 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
14037677 GTTAGCCATG
*
14037687 TATACCAGTAGCCATGTATAACAACATAAGCAACAA
1 TATACCAGTAGCCATATATAACAACATAAGCAACAA
14037723 TATACCAGTAGCCATATATAACAACATAAGCAACAA
1 TATACCAGTAGCCATATATAACAACATAAGCAACAA
14037759 TATACCA
1 TATACCA
14037766 ACAACAATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.48, C:0.23, G:0.09, T:0.20
Consensus pattern (36 bp):
TATACCAGTAGCCATATATAACAACATAAGCAACAA
Found at i:14037767 original size:20 final size:20
Alignment explanation
Indices: 14037703--14037768 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
14037693 AGTAGCCATG
14037703 TATAACAACATAAGCAACAA
1 TATAACAACATAAGCAACAA
14037723 TAT-AC--CAGT-AGC--CATA
1 TATAACAACA-TAAGCAACA-A
14037739 TATAACAACATAAGCAACAA
1 TATAACAACATAAGCAACAA
*
14037759 TATACCAACA
1 TATAACAACA
14037769 ACAATATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 16
0.69 0.02 0.30
Matches are distributed among these distances:
15 2 0.05
16 4 0.11
17 7 0.19
18 2 0.05
19 7 0.19
20 13 0.35
21 2 0.05
ACGTcount: A:0.53, C:0.23, G:0.06, T:0.18
Consensus pattern (20 bp):
TATAACAACATAAGCAACAA
Found at i:14037785 original size:36 final size:36
Alignment explanation
Indices: 14037703--14037789 Score: 122
Period size: 36 Copynumber: 2.4 Consensus size: 36
14037693 AGTAGCCATG
** * *
14037703 TATAACAACATAAGCAACAATATACCAGTAGCCATA
1 TATAACAACATAAGCAACAATATACCAACAACAATA
14037739 TATAACAACATAAGCAACAATATACCAACAACAATA
1 TATAACAACATAAGCAACAATATACCAACAACAATA
14037775 TTATAA-AACATAAGC
1 -TATAACAACATAAGC
14037790 TGGTTTTCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 41 0.89
37 5 0.11
ACGTcount: A:0.54, C:0.21, G:0.06, T:0.20
Consensus pattern (36 bp):
TATAACAACATAAGCAACAATATACCAACAACAATA
Found at i:14038603 original size:6 final size:6
Alignment explanation
Indices: 14038592--14038628 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
14038582 TGCTTCATTT
14038592 CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG C
1 CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG C
14038629 TGAGAACCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.68, G:0.16, T:0.00
Consensus pattern (6 bp):
CCACCG
Found at i:14044998 original size:39 final size:39
Alignment explanation
Indices: 14044944--14045023 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
14044934 AAATTAAACG
* * *
14044944 GTAAAAGAGAATAGGAATGAGAGCTTTCGATTGGTGCAA
1 GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
14044983 GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
1 GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
14045022 GT
1 GT
14045024 GATGCGAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.07, G:0.28, T:0.24
Consensus pattern (39 bp):
GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
Found at i:14046479 original size:20 final size:21
Alignment explanation
Indices: 14046451--14046494 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
14046441 AAAAGGAAAA
* *
14046451 CTTATAAAAATAT-ATTTTTT
1 CTTAAAAAAATATGATTATTT
*
14046471 CTTAAAAAATTATGATTATTT
1 CTTAAAAAAATATGATTATTT
14046492 CTT
1 CTT
14046495 TTTATTTTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (21 bp):
CTTAAAAAAATATGATTATTT
Found at i:14046494 original size:21 final size:20
Alignment explanation
Indices: 14046451--14046494 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
14046441 AAAAGGAAAA
*
14046451 CTTATAAAAATATATTTTTT
1 CTTATAAAAATATATTATTT
14046471 CTTA-AAAAATTATGATTATTT
1 CTTATAAAAA-TAT-ATTATTT
14046492 CTT
1 CTT
14046495 TTTATTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 7 0.33
21 9 0.43
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
CTTATAAAAATATATTATTT
Found at i:14049139 original size:23 final size:23
Alignment explanation
Indices: 14049081--14049159 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 23
14049071 CGCGTGCTCG
* *
14049081 TGAATTTAGCACTCTGGTGTTCT
1 TGAATTTAGCACTTTGGTGTTCC
** * *
14049104 TGAAACTAACACTTTGGGGTTCC
1 TGAATTTAGCACTTTGGTGTTCC
*
14049127 TGAATTTAGCACTTTGGTGCTCC
1 TGAATTTAGCACTTTGGTGTTCC
14049150 T-AATTTAGCA
1 TGAATTTAGCA
14049160 TTTATGTGAT
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 9 0.20
23 36 0.80
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (23 bp):
TGAATTTAGCACTTTGGTGTTCC
Found at i:14049172 original size:22 final size:22
Alignment explanation
Indices: 14049113--14049178 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
14049103 TTGAAACTAA
* *
14049113 CACTTTGGGGTTCCTGAATTTAG
1 CACTTTGGTGATCCT-AATTTAG
*
14049136 CACTTTGGTGCTCCTAATTTAG
1 CACTTTGGTGATCCTAATTTAG
*
14049158 CA-TTTATGTGATCCTATATTT
1 CACTTT-GGTGATCCTA-ATTT
14049179 GTGAATTCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 17 0.46
23 17 0.46
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (22 bp):
CACTTTGGTGATCCTAATTTAG
Found at i:14053555 original size:9 final size:9
Alignment explanation
Indices: 14053541--14053577 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
14053531 TATAGTTTGA
14053541 TATTCGAAT
1 TATTCGAAT
14053550 TATTCGAAT
1 TATTCGAAT
**
14053559 TATTCGAGC
1 TATTCGAAT
14053568 TATTCGAAT
1 TATTCGAAT
14053577 T
1 T
14053578 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14054251 original size:27 final size:26
Alignment explanation
Indices: 14054220--14054346 Score: 77
Period size: 27 Copynumber: 4.7 Consensus size: 26
14054210 ATATCTTGGT
14054220 TATATGACTAGATTATATGGAAATAGA
1 TATATGA-TAGATTATATGGAAATAGA
* *
14054247 TATATGAAATGGTTATAT-G-AATCA-A
1 TATATGATA-GATTATATGGAAAT-AGA
* *
14054272 TTATATGGAAATAGA-TATAT-GAAATGGT
1 -TATAT-G--ATAGATTATATGGAAATAGA
14054300 TATATGAATCA-ATTATATGGAAATAGA
1 TATATG-AT-AGATTATATGGAAATAGA
*
14054327 TATATGATATGGTTATATGG
1 TATATGATA-GATTATATGG
14054347 TCATATAGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 26
0.69 0.08 0.23
Matches are distributed among these distances:
25 9 0.12
26 17 0.22
27 46 0.59
28 4 0.05
29 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (26 bp):
TATATGATAGATTATATGGAAATAGA
Found at i:14054255 original size:13 final size:13
Alignment explanation
Indices: 14054228--14054399 Score: 83
Period size: 13 Copynumber: 13.2 Consensus size: 13
14054218 GTTATATGAC
14054228 TAGATTATATGGAAA
1 TAGA-TATAT-GAAA
14054243 TAGATATATGAAA
1 TAGATATATGAAA
* *
14054256 TGGTTATATG-AA
1 TAGATATATGAAA
14054268 TCA-ATTATATGGAAA
1 T-AGA-TATAT-GAAA
14054283 TAGATATATGAAA
1 TAGATATATGAAA
* *
14054296 TGGTTATATG-AA
1 TAGATATATGAAA
14054308 TCA-ATTATATGGAAA
1 T-AGA-TATAT-GAAA
*
14054323 TAGATATATGATA
1 TAGATATATGAAA
* * *
14054336 TGGTTATATG--G
1 TAGATATATGAAA
*
14054347 T-CATATA-GAAA
1 TAGATATATGAAA
14054358 TAGATATATGAAA
1 TAGATATATGAAA
* *
14054371 TGGA-ATATTAGATA
1 TAGATATA-T-GAAA
*
14054385 TAGATATTTGAAA
1 TAGATATATGAAA
14054398 TA
1 TA
14054400 AAATGTGAGC
Statistics
Matches: 119, Mismatches: 21, Indels: 36
0.68 0.12 0.20
Matches are distributed among these distances:
9 1 0.01
10 4 0.03
11 2 0.02
12 14 0.12
13 58 0.49
14 26 0.22
15 14 0.12
ACGTcount: A:0.45, C:0.02, G:0.18, T:0.35
Consensus pattern (13 bp):
TAGATATATGAAA
Found at i:14054266 original size:40 final size:40
Alignment explanation
Indices: 14054216--14054373 Score: 238
Period size: 40 Copynumber: 4.1 Consensus size: 40
14054206 GAATATATCT
*
14054216 TGGTTATATGACT-AGATTATATGGAAATAGATATATGAAA
1 TGGTTATATGAATCA-ATTATATGGAAATAGATATATGAAA
14054256 TGGTTATATGAATCAATTATATGGAAATAGATATATGAAA
1 TGGTTATATGAATCAATTATATGGAAATAGATATATGAAA
*
14054296 TGGTTATATGAATCAATTATATGGAAATAGATATATGATA
1 TGGTTATATGAATCAATTATATGGAAATAGATATATGAAA
*
14054336 TGGTTATATG-GTC-A-TATA--GAAATAGATATATGAAA
1 TGGTTATATGAATCAATTATATGGAAATAGATATATGAAA
14054371 TGG
1 TGG
14054374 AATATTAGAT
Statistics
Matches: 113, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
35 19 0.17
37 4 0.04
38 1 0.01
39 2 0.02
40 86 0.76
41 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.35
Consensus pattern (40 bp):
TGGTTATATGAATCAATTATATGGAAATAGATATATGAAA
Found at i:14054983 original size:49 final size:50
Alignment explanation
Indices: 14054928--14055028 Score: 177
Period size: 49 Copynumber: 2.0 Consensus size: 50
14054918 TTTTGCTACC
* *
14054928 TAAATGCAATTTTGGTGTAATGACCTGATAGTCACAGGTATC-GAAAATG
1 TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
14054977 TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
1 TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
14055027 TA
1 TA
14055029 TTTTCGAGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 41 0.84
50 8 0.16
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (50 bp):
TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
Found at i:14055425 original size:25 final size:25
Alignment explanation
Indices: 14055368--14055442 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
14055358 ATAGAAATAG
* *
14055368 AAAAAGAAGGAGAGAAAGAAACGAA
1 AAAAAGAAGGAAAGAAAGAAAAGAA
* * *
14055393 ACAGAGAAGGAAATAAAGAAAAGAA
1 AAAAAGAAGGAAAGAAAGAAAAGAA
*
14055418 AAAAAGAAAGAAAGAAGGAGAAAAG
1 AAAAAGAAGGAAAGAA--AGAAAAG
14055443 TTAGGGTTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 32 0.82
27 7 0.18
ACGTcount: A:0.69, C:0.03, G:0.27, T:0.01
Consensus pattern (25 bp):
AAAAAGAAGGAAAGAAAGAAAAGAA
Found at i:14056122 original size:24 final size:24
Alignment explanation
Indices: 14056095--14056140 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
14056085 ATTGAAATGG
14056095 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
14056119 ATTGAATTTATATTGATTGAAT
1 ATTGAATTTATATTGATTGAAT
14056141 AGGTATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.15
24 12 0.60
25 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:14056360 original size:40 final size:40
Alignment explanation
Indices: 14056297--14056431 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
14056287 CGACTTCGAG
*
14056297 TCGATGAGACACTGGGTGTCAATTTATTACTTCGGATTAA
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
* * *
14056337 TTCGATGAGGCA-TGGGTGCCAA--T-TTACTTCAGTTTAA
1 -TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
*
14056374 CCGATGAGACACTGGGTGTCAATTTATTACTTCA-AGTT-A
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCAGA-TTAA
14056413 TCCGATGATG-CACTGGGTG
1 T-CGATGA-GACACTGGGTG
14056432 CCAAACTGGT
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
36 9 0.12
37 21 0.27
38 1 0.01
39 2 0.03
40 34 0.44
41 11 0.14
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
Found at i:14056600 original size:20 final size:20
Alignment explanation
Indices: 14056575--14056614 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14056565 TTGAATATTG
14056575 TATGGATAAAGC-AATTGCAT
1 TATGGAT-AAGCTAATTGCAT
14056595 TATGGATAAGCTAATTGCAT
1 TATGGATAAGCTAATTGCAT
14056615 AAACGAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (20 bp):
TATGGATAAGCTAATTGCAT
Found at i:14057118 original size:13 final size:13
Alignment explanation
Indices: 14057100--14057127 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14057090 TGAATGATAT
14057100 TTTGATGATATAA
1 TTTGATGATATAA
14057113 TTTGATGATATAA
1 TTTGATGATATAA
14057126 TT
1 TT
14057128 GTGGTACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
TTTGATGATATAA
Found at i:14061830 original size:218 final size:216
Alignment explanation
Indices: 14061427--14061830 Score: 531
Period size: 218 Copynumber: 1.9 Consensus size: 216
14061417 ATTTTTACTG
* *
14061427 GTTAGGATTCATGAATTTATATTCATTTATGTTGGTGTTACACAATTTTAAGTTTGCAAATACAA
1 GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAGTTTGCAAATACAA
* ** ** * * *
14061492 TAATATTTATTGACCTATCGTTTTCATCAATGTATTCTATTGGTCACAATTTAACTAATAGAACA
66 TAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAACA
** * * * * * * **
14061557 ATTGCATTATAATTTTTATCTTTTGAATTGTTCTTATAGCGTAATTATGTTAAGTACGTCGACGA
131 ACAGCATTACAAGTTTTATCTTTT-AATTATTCTAATACCATAATTACATTAAGTACGTCGACGA
14061622 TAACGTTTTGCATAATGCAACT
195 TAACGTTTTGCATAATGCAACT
*
14061644 GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAGTTTTGCAAATACT
1 GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAG-TTTGCAAATACA
*
14061709 ATAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAAT
65 ATAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAAC
* * * *
14061774 AGCAGCATTACGAGTTTTATCTCCTTT-ATTATTGTAATTCCATAATTACATTAAGTA
130 AACAGCATTACAAGTTTTATCT--TTTAATTATTCTAATACCATAATTACATTAAGTA
14061831 TTTTGGTGAT
Statistics
Matches: 158, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
217 50 0.32
218 105 0.66
220 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (216 bp):
GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAGTTTGCAAATACAA
TAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAACA
ACAGCATTACAAGTTTTATCTTTTAATTATTCTAATACCATAATTACATTAAGTACGTCGACGAT
AACGTTTTGCATAATGCAACT
Found at i:14062449 original size:37 final size:37
Alignment explanation
Indices: 14062408--14062484 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
14062398 AGCTCCTTAC
* * *
14062408 TTTCTTCCCGATT-CATTCAACGCTTCAAGTTTCCTAT
1 TTTCTTCCCGATTCCATT-AACACTTCAAGCTTCCAAT
*
14062445 TTTCTTCTCGATTCCATTAACACTTCAAGCTTCCAAT
1 TTTCTTCCCGATTCCATTAACACTTCAAGCTTCCAAT
14062482 TTT
1 TTT
14062485 ATTCTTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 31 0.89
38 4 0.11
ACGTcount: A:0.21, C:0.29, G:0.06, T:0.44
Consensus pattern (37 bp):
TTTCTTCCCGATTCCATTAACACTTCAAGCTTCCAAT
Found at i:14062496 original size:37 final size:38
Alignment explanation
Indices: 14062421--14062509 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 38
14062411 CTTCCCGATT
* * * * *
14062421 CATTCAACGCTTCAAGTTTCCTATTTTCTTCTCGATTC
1 CATTCAACACTTCAAGCTTCCAATTTTATTCTCAATTC
*
14062459 CATT-AACACTTCAAGCTTCCAATTTTATTCTTAATTC
1 CATTCAACACTTCAAGCTTCCAATTTTATTCTCAATTC
*
14062496 C-TTCAACTCTTCAA
1 CATTCAACACTTCAA
14062510 TCTCTAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 2 0.05
37 37 0.86
38 4 0.09
ACGTcount: A:0.25, C:0.28, G:0.04, T:0.43
Consensus pattern (38 bp):
CATTCAACACTTCAAGCTTCCAATTTTATTCTCAATTC
Found at i:14064657 original size:37 final size:37
Alignment explanation
Indices: 14064606--14064859 Score: 172
Period size: 37 Copynumber: 6.9 Consensus size: 37
14064596 ATCGTATGCC
*
14064606 TTCCTTCAACCCTTCAAGCTCCTTACGTTCTTCCCTA
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* ** * * ***
14064643 TTCCTTCAATCCTTCAAATTCCATATTTTCTTCTAGA
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* *** * *
14064680 TT-CTCACAACCCTTCAAGCTCCTTAAAATATTCCCTT
1 TTCCT-TCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* * *
14064717 TTCCTTCAAACCTTGAAGCTCCTTACTTTCTTCCCGA
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* * * * * *
14064754 TTCATTCAACCCTTAAAGATCCCTATTTTCTTCCCTC
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* * * *
14064791 TTGCTTCAACCCTTCAAACT-CTCTACTTTCTTCCATC
1 TTCCTTCAACCCTTCAAGCTCCT-TACTTTCTTCCCTA
* * * *
14064828 TTCCTTAAACACATCAAGTTTCC-TACTTTCTT
1 TTCCTTCAACCCTTCAAG-CTCCTTACTTTCTT
14064860 ATTGACTCCA
Statistics
Matches: 159, Mismatches: 53, Indels: 10
0.72 0.24 0.05
Matches are distributed among these distances:
36 3 0.02
37 152 0.96
38 3 0.02
39 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.04, T:0.40
Consensus pattern (37 bp):
TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
Found at i:14068571 original size:37 final size:37
Alignment explanation
Indices: 14068521--14068715 Score: 137
Period size: 37 Copynumber: 5.3 Consensus size: 37
14068511 ATCGTACACA
*
14068521 TTCCTTCAACCCTTCAAGATCCCTATATTCTTCCATT
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
* * * **
14068558 TTCCTTCAACCCTTGAA-ACTCCCTATTTTTTTCTAGA
1 TTCCTTCAACCCTTGAAGA-TCCCTATATTCTTCCATT
* * * * * * * *
14068595 TTCCATCAACCCTTCAAGCTCCTTACAATATTCCCTT
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
* * *
14068632 TTCCTTCAA-CCTTGAAGCTCTCTATTTTCTTCTCGA--
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTC-C-ATT
* * *
14068668 TTCATTCAACCCTTGAAGATCCCTATGTTCTTCCCTT
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
* *
14068705 TTACTCCAACC
1 TTCCTTCAACC
14068716 TGTCAAACAC
Statistics
Matches: 116, Mismatches: 35, Indels: 14
0.70 0.21 0.08
Matches are distributed among these distances:
36 26 0.22
37 90 0.78
ACGTcount: A:0.21, C:0.34, G:0.05, T:0.40
Consensus pattern (37 bp):
TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
Found at i:14068702 original size:73 final size:73
Alignment explanation
Indices: 14068520--14068737 Score: 240
Period size: 73 Copynumber: 3.0 Consensus size: 73
14068510 AATCGTACAC
* *
14068520 ATTCCTTCAACCCTTCAAGATCCCTATATTCTTCCATTTTCCTTCAACCCTTGAAACTCCCTATT
1 ATTCATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAA-CCTTGAAACTCCCTATT
*
14068585 TTTTTCTAG
65 TTCTTCTAG
* * * * * * *
14068594 ATTCCA-TCAACCCTTCAAGCTCCTTACAATATTCCCTTTTCCTTCAACCTTGAAGCTCTCTATT
1 ATT-CATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAACCTTGAAACTCCCTATT
*
14068658 TTCTTCTCG
65 TTCTTCTAG
* * * * * * *
14068667 ATTCATTCAACCCTTGAAGATCCCTATGTTCTTCCCTTTTACTCCAACCTGTCAAACACCCTACT
1 ATTCATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAACCT-TGAAACTCCCTATT
14068732 TTCTTC
65 TTCTTC
14068738 CCTCTTCCTT
Statistics
Matches: 116, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
72 2 0.02
73 60 0.52
74 53 0.46
75 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.05, T:0.39
Consensus pattern (73 bp):
ATTCATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAACCTTGAAACTCCCTATTT
TCTTCTAG
Found at i:14071388 original size:37 final size:36
Alignment explanation
Indices: 14071311--14071473 Score: 152
Period size: 37 Copynumber: 4.4 Consensus size: 36
14071301 TCCTTATTGA
* * *
14071311 TTCAACCTTTCAAACTCCTTAC-TTCTCCCCGATTCC
1 TTCAACCTTTCAAGCTTCTTACTTTCT-CCCAATTCC
* * *
14071347 TTCAACCTTTCAAGCTTCATACTTTCTCCATAATTCT
1 TTCAACCTTTCAAGCTTCTTACTTTCTCC-CAATTCC
14071384 TTCAACCTTTCAAGCTTCTTACTTTCTTCCCAATTCC
1 TTCAACCTTTCAAGCTTCTTACTTTC-TCCCAATTCC
* * * * *
14071421 TTCAACTCTTT-AAGCTTCCTAGTTTGTTCTCGATTCC
1 TTCAAC-CTTTCAAGCTTCTTACTTT-CTCCCAATTCC
14071458 TTCAACTCTTT-AAGCT
1 TTCAAC-CTTTCAAGCT
14071474 ACCTTATTTC
Statistics
Matches: 108, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
36 21 0.19
37 80 0.74
38 7 0.06
ACGTcount: A:0.20, C:0.33, G:0.05, T:0.42
Consensus pattern (36 bp):
TTCAACCTTTCAAGCTTCTTACTTTCTCCCAATTCC
Found at i:14071462 original size:74 final size:74
Alignment explanation
Indices: 14071311--14071486 Score: 191
Period size: 74 Copynumber: 2.4 Consensus size: 74
14071301 TCCTTATTGA
* * *
14071311 TTCAACCTTTCAAACTCCTTAC-TTCTCCCCGATTCCTTCAACCTTTCAAGCTTCATACTTTCTC
1 TTCAACCTTTCAAGCTCCTTACTTTCTTCCCAATTCCTTCAACCTTTCAAGCTTCATACTTTCTC
*
14071375 CATAATTCT
66 CATAATTCC
* * * *
14071384 TTCAACCTTTCAAGCTTCTTACTTTCTTCCCAATTCCTTCAACTCTTT-AAGCTTCCTAGTTTGT
1 TTCAACCTTTCAAGCTCCTTACTTTCTTCCCAATTCCTTCAAC-CTTTCAAGCTTCATACTTTCT
* *
14071448 TC-TCGATTCC
65 CCAT-AATTCC
14071458 TTCAACTCTTT-AAGCTACCTTA-TTTCTTC
1 TTCAAC-CTTTCAAGCT-CCTTACTTTCTTC
14071487 ACTCTTCTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
73 21 0.24
74 54 0.62
75 12 0.14
ACGTcount: A:0.20, C:0.32, G:0.05, T:0.43
Consensus pattern (74 bp):
TTCAACCTTTCAAGCTCCTTACTTTCTTCCCAATTCCTTCAACCTTTCAAGCTTCATACTTTCTC
CATAATTCC
Found at i:14072595 original size:37 final size:37
Alignment explanation
Indices: 14072540--14072812 Score: 201
Period size: 37 Copynumber: 7.4 Consensus size: 37
14072530 AATTGAATTC
* * * * *
14072540 CTTCCTTTAACCCCTCAAGCTCCCTACGTTCTGCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * *
14072577 CTTCCTTCAACCCTTCAAGCTCCCTAATTTCTTCCCA
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * * *
14072614 ATTCATTCAACCCTTGAAAATCCCTA-TATTCTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACT-TTCTTCCCT
* *
14072651 CTTGCTTCAACCCTTCAAACTCTCTACTTTCTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * * *
14072688 CTTCCTTCAA-CCTACCAAGCTTCCTACTTTCTTCCCAA
1 CTTCCTTCAACCCT-TCAAACTCCCTACTTTCTTCCC-T
* ** * * * * *
14072726 C-TCCATCAACCCTTTGAGCTTCCTAGTTTATTCCCG
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * * * * *
14072762 ATTCCTTCAACTCTTCAATCTTCCTATTTTTTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
*
14072799 TTTCCTTCAACCCT
1 CTTCCTTCAACCCT
14072813 CATCATCCCA
Statistics
Matches: 188, Mismatches: 42, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
36 4 0.02
37 179 0.95
38 5 0.03
ACGTcount: A:0.18, C:0.39, G:0.04, T:0.38
Consensus pattern (37 bp):
CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
Found at i:14072760 original size:111 final size:110
Alignment explanation
Indices: 14072541--14072810 Score: 260
Period size: 111 Copynumber: 2.4 Consensus size: 110
14072531 ATTGAATTCC
* * * * * * *
14072541 TTCCTTTAACCCCTCAAGCTCCCTACGTTCTGCCCTCTTCCTTCAACCCTTCAAGCTCCCTAATT
1 TTCCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAA-CCTCCAAGCTCCCTAATT
* * **
14072606 TCTTCCCAATTCATTCAACCCTTGAAAATCCCTATATTCTTCCCTC
65 TCTTCCCAATCCATTCAACCCTTGAAAATCCCTATATTATTCCCGA
* * *
14072652 TTGCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAACCTACCAAGCTTCCTACTT
1 TTCCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAACCT-CCAAGCTCCCTAATT
** *
14072717 TCTTCCCAACTCCA-TCAACCCTTTG-AGCTTCCTAGT-TTATTCCCGA
65 TCTTCCCAA-TCCATTCAACCC-TTGAAAATCCCTA-TATTATTCCCGA
* * * * *
14072763 TTCCTTCAACTCTTCAATCT-TCCTATTTTTTTCCCTTTTCCTTCAACC
1 TTCCTTCAACCCTTCAAACTCT-CTACTTTCTTCCCTCTTCCTTCAACC
14072811 CTCATCATCC
Statistics
Matches: 131, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
110 4 0.03
111 120 0.92
112 7 0.05
ACGTcount: A:0.19, C:0.39, G:0.04, T:0.39
Consensus pattern (110 bp):
TTCCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAACCTCCAAGCTCCCTAATTT
CTTCCCAATCCATTCAACCCTTGAAAATCCCTATATTATTCCCGA
Found at i:14073772 original size:74 final size:72
Alignment explanation
Indices: 14073651--14073866 Score: 225
Period size: 74 Copynumber: 2.9 Consensus size: 72
14073641 TTGCACGCCT
* * * * * *
14073651 TCCTTCAACACTTCAAGCTCCCTACATTTTTCCCTCTTCTTTTAACCCTTCAAGCACCCTACTTT
1 TCCTTCAACACTTCAAGCTCCCTAAATCTTT-CCTTTTCCTTCAACCCTTCAAGCTCCCTACTTT
*
14073716 CTTTTTGAG
65 CTTTCTG-G
* **
14073725 TCCTTCAACACTTCGAGCTCCCTATAATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACAAT
1 TCCTTCAACACTTCAAGCTCCCTA-AATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACTTT
*
14073790 CTTTCTGT
65 CTTTCTGG
* * * * * * *
14073798 TCCTTTAAACCCTTTAAGCTCCCTACAATCTTTCATTTTCCTTCAATCCTTGAAGCTCCTTACTT
1 TCC-TTCAACACTTCAAGCTCCCTA-AATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACTT
14073863 TCTT
64 TCTT
14073867 CCCAATTCAT
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
73 3 0.03
74 110 0.93
75 5 0.04
ACGTcount: A:0.19, C:0.35, G:0.05, T:0.41
Consensus pattern (72 bp):
TCCTTCAACACTTCAAGCTCCCTAAATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACTTTC
TTTCTGG
Found at i:14073944 original size:37 final size:37
Alignment explanation
Indices: 14073649--14074034 Score: 195
Period size: 37 Copynumber: 10.4 Consensus size: 37
14073639 AATTGCACGC
* * *
14073649 CTTCCTTCAACACTTCAAGCTCCCTACATTT-TTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTA-TTTTCTTCCCT
* * * * * **
14073686 CTTCTTTTAACCCTTCAAGCACCCTACTTTCTT-TTT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
** * * * ** *
14073722 GAGTCCTTCAACACTTCGAGCTCCCTATAATCTTTCCT
1 -CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * *** *
14073760 TTTCCTTCAACCCTTCAAGCTCCCTACAATCTT-TCT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * *** * *
14073796 GTTCCTTTAAACCCTTTAAGCTCCCTACAATCTTTCAT
1 CTTCC-TTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * * * *
14073834 TTTCCTTCAATCCTTGAAGCTCCTTACTTTCTTCCCA
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * *
14073871 ATTCATTCAACCCTT-AAAGATCCCTATGTTCTTCCCT
1 CTTCCTTCAACCCTTCAAA-CTCCCTATTTTCTTCCCT
*
14073908 CTTGCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * * * *
14073945 CTTCCTTTAACCCTTCGATCTTCCTAGTTTATTCCCG
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * *
14073982 ATTCCTTTAACCCTTCAAGCTCCCTACTTTCTTACCT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
14074019 CTTCCTTCAACCCTTC
1 CTTCCTTCAACCCTTC
14074035 TCATCCCATT
Statistics
Matches: 270, Mismatches: 72, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
36 12 0.04
37 249 0.92
38 9 0.03
ACGTcount: A:0.19, C:0.37, G:0.05, T:0.40
Consensus pattern (37 bp):
CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
Found at i:14073950 original size:111 final size:111
Alignment explanation
Indices: 14073835--14074034 Score: 244
Period size: 111 Copynumber: 1.8 Consensus size: 111
14073825 ATCTTTCATT
* *
14073835 TTCCTTCAATCCTT-GAAGC-TCCTTACTTTCTTCCCAATTCATTCAACCCTTAAAGATCCCTA-
1 TTCCTTCAACCCTTCG-AGCTTCC-TACTTTATTCCCAATTCATTCAACCCTTAAAGATCCCTAC
* *
14073897 TGTTCTTCCCTCTTGCTTCAACCCTTCAAACTCCCTATTTTCTTCCCTC
64 T-TTCTTACCTCTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCTC
* * * * * * * *
14073946 TTCCTTTAACCCTTCGATCTTCCTAGTTTATTCCCGATTCCTTTAACCCTTCAAGCTCCCTACTT
1 TTCCTTCAACCCTTCGAGCTTCCTACTTTATTCCCAATTCATTCAACCCTTAAAGATCCCTACTT
14074011 TCTTACCTCTTCCTTCAACCCTTC
66 TCTTACCTCTTCCTTCAACCCTTC
14074035 TCATCCCATT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
111 69 0.93
112 5 0.07
ACGTcount: A:0.17, C:0.38, G:0.04, T:0.41
Consensus pattern (111 bp):
TTCCTTCAACCCTTCGAGCTTCCTACTTTATTCCCAATTCATTCAACCCTTAAAGATCCCTACTT
TCTTACCTCTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCTC
Found at i:14080746 original size:19 final size:19
Alignment explanation
Indices: 14080722--14080770 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
14080712 TGAGAGTTTC
* *
14080722 TTTTATATTTCTTCTTCTG
1 TTTTATATTTCCTCTTCAG
*
14080741 TTTTATTAGTTCCTCTTCAG
1 TTTTA-TATTTCCTCTTCAG
*
14080761 TTTAATATTT
1 TTTTATATTT
14080771 TGAAGCTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.16, C:0.14, G:0.06, T:0.63
Consensus pattern (19 bp):
TTTTATATTTCCTCTTCAG
Found at i:14082725 original size:21 final size:21
Alignment explanation
Indices: 14082701--14082740 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14082691 CGTCTCAATA
14082701 TTTA-ATTACAAATATTTAATT
1 TTTATATT-CAAATATTTAATT
*
14082722 TTTATATTTAAATATTTAA
1 TTTATATTCAAATATTTAA
14082741 ATATAGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTATATTCAAATATTTAATT
Found at i:14083592 original size:27 final size:27
Alignment explanation
Indices: 14083542--14083594 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
14083532 TGACGATATT
14083542 ATAATATTTTTTTAATTAATTTAAATG
1 ATAATATTTTTTTAATTAATTTAAATG
14083569 ATAAT-TTTATTTGTAATTAA-TTAAAT
1 ATAATATTT-TTT-TAATTAATTTAAAT
14083595 TAATAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 3 0.12
27 14 0.58
28 7 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (27 bp):
ATAATATTTTTTTAATTAATTTAAATG
Found at i:14083600 original size:28 final size:27
Alignment explanation
Indices: 14083542--14083600 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 27
14083532 TGACGATATT
*
14083542 ATAATATTTTTTTAATTAATTTAAATG
1 ATAATATTTTTTTAATTAATTTAAATA
14083569 ATAAT-TTTATTTGTAATTAA-TTAAATTA
1 ATAATATTT-TTT-TAATTAATTTAAA-TA
14083597 ATAA
1 ATAA
14083601 GAGCTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 3 0.11
27 13 0.46
28 12 0.43
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (27 bp):
ATAATATTTTTTTAATTAATTTAAATA
Found at i:14084956 original size:100 final size:101
Alignment explanation
Indices: 14084844--14085272 Score: 534
Period size: 100 Copynumber: 4.2 Consensus size: 101
14084834 GGTTTAATAA
**
14084844 TTTTTA-TGAATGTAATTTTTTAAAAAGGTGTTATAGTTATTTTGTTAGTAATTTATGATTA-GT
1 TTTTTAGT-AATGTAATTTTTTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGGT
*
14084907 TTATAAATTGTTAGTGTTTAGTTTAGGGTTTTATGAT
65 TTATAAATTGTTAGTGTTTAGTTTAGGGTTTTGTGAT
* * * *
14084944 TTTTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTTATTTTGTTAGTAATTTATGATTAG
1 TTTTTAGTAATGTAATTTT---TTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAG
* * *
14085009 GTTATATAAATTGTTA----TT-GTATAGTGTTTTCTGAT
63 GTT-TATAAATTGTTAGTGTTTAGTTTAGGGTTTTGTGAT
* * *
14085044 TTATTAGTAATGTAAATTATTTTTAAAAAAATGTTATAGTTATTTTGTTGGTAATTTATG-TTTG
1 TTTTTAGTAATGT-AA-T-TTTTTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAG
14085108 GTTTATAAATTGTTAGTGTTTAGTTT-GGGTTTTGTGAT
63 GTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTTGTGAT
*
14085146 TTTTTAGTAATGTAATTTTTTTTAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTAG
1 TTTTTAGTAATGTAA--TTTTTTAAAAA-AATGTTATAGTTATTTTGTTAGTAATTTATGATTAG
* *
14085211 GCTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGAT
63 G-TTTATAAATTGTTAGTGTTTAGTTTAGGGTTTTGTGAT
*
14085251 TTTTTATTAATGTAATTTTTTA
1 TTTTTAGTAATGTAATTTTTTA
14085273 TAATGTAATT
Statistics
Matches: 284, Mismatches: 26, Indels: 35
0.82 0.08 0.10
Matches are distributed among these distances:
98 12 0.04
99 6 0.02
100 76 0.27
101 17 0.06
102 56 0.20
103 53 0.19
104 27 0.10
105 37 0.13
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (101 bp):
TTTTTAGTAATGTAATTTTTTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGGTT
TATAAATTGTTAGTGTTTAGTTTAGGGTTTTGTGAT
Found at i:14085204 original size:202 final size:203
Alignment explanation
Indices: 14084860--14085235 Score: 612
Period size: 202 Copynumber: 1.9 Consensus size: 203
14084850 TGAATGTAAT
**
14084860 TTTTTAAAAAGGTGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTT
1 TTTTTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTT
*
14084925 TAGTTTAGGGTTTTATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTTATTTT
66 TAGTTTAGGGTTTTATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATTTTATAGTTATTTT
* *
14084990 GTTAGTAATTTATGATTAGGTTATATAAATTGTTATTGTATAGTGTTTTCTGATTTATTAGTAAT
131 GTTAGTAATTTATGATTAGGCTATATAAATTGTTAGTGTATAGTGTTTTCTGATTTATTAGTAAT
14085055 GTAAATTA
196 GTAAATTA
* * *
14085063 TTTTTAAAAAAATGTTATAGTTATTTTGTTGGTAATTTATGTTTGGTTTATAAATTGTTAGTGTT
1 TTTTTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTT
* ***
14085128 TAGTTT-GGGTTTTGTGATTTTTTAGTAATGTAATTTT-TTTTAAAAATAATTTTATAGTTATTT
66 TAGTTTAGGGTTTTATGATTTTTTAGTAATGTAATTTTAAAAT-AAAATAATTTTATAGTTATTT
*
14085191 TGTTAGTAATTTATGATTAGGCTATATAAATTGTTAGTGTTTAGT
130 TGTTAGTAATTTATGATTAGGCTATATAAATTGTTAGTGTATAGT
14085236 TTAGTGTTTT
Statistics
Matches: 159, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
201 1 0.01
202 92 0.58
203 66 0.42
ACGTcount: A:0.30, C:0.01, G:0.16, T:0.54
Consensus pattern (203 bp):
TTTTTAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTT
TAGTTTAGGGTTTTATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATTTTATAGTTATTTT
GTTAGTAATTTATGATTAGGCTATATAAATTGTTAGTGTATAGTGTTTTCTGATTTATTAGTAAT
GTAAATTA
Found at i:14085276 original size:15 final size:16
Alignment explanation
Indices: 14085249--14085284 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
14085239 GTGTTTTGTG
14085249 ATTTTTTATTAATGTA
1 ATTTTTTATTAATGTA
14085265 ATTTTTTA-TAATGTA
1 ATTTTTTATTAATGTA
14085280 ATTTT
1 ATTTT
14085285 ATTTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
ATTTTTTATTAATGTA
Found at i:14087389 original size:33 final size:33
Alignment explanation
Indices: 14087320--14087434 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 33
14087310 ATCCACTTCA
* * * * *
14087320 GTACTCCATTCTTTCTGGCCCATACCCACCGCC
1 GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
* *
14087353 GTACTCCACTCTTCCTAGCCCGTATCCACAGTC
1 GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
* * * *
14087386 GTACTCCACTCTTCCCGGCCGGTATCTACTGCC
1 GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
14087419 GTACTCCACTACTTCC
1 GTACTCCACT-CTTCC
14087435 GGCTCAAATT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
33 63 0.93
34 5 0.07
ACGTcount: A:0.16, C:0.43, G:0.13, T:0.28
Consensus pattern (33 bp):
GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
Found at i:14087745 original size:76 final size:76
Alignment explanation
Indices: 14087629--14087859 Score: 308
Period size: 77 Copynumber: 3.1 Consensus size: 76
14087619 AATAACTTCA
* *
14087629 TATTTATATAATGAC-TTTTTTCCATTTAAGTTATTAATTTTATGGGTTTTTTTGTAATTTAAAT
1 TATTTATGTAATGACTTTTTTTCCATTTAAGTTATTAATTTTATGGGTTTTTTTGCAATTTAAAT
14087693 AGTCAACTTTG
66 AGTCAACTTTG
* *
14087704 TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
1 TATTTATGTAATGACTTTTTTTCCATTTAAGTTATTAATTTTATGGGTTTT-TTTGCAATTTAAA
14087769 TAGTCAACTTTG
65 TAGTCAACTTTG
* * * *
14087781 TATTTATGTAATGAATTTTTTGT-TATTTCAGTTATTAATTTTA-GGAG-TTTTTTACAATTTAA
1 TATTTATGTAATGACTTTTTT-TCCATTTAAGTTATTAATTTTATGG-GTTTTTTTGCAATTTAA
* * *
14087843 ATAATAAACTTTA
64 ATAGTCAACTTTG
14087856 TATT
1 TATT
14087860 ATTTACGTAA
Statistics
Matches: 140, Mismatches: 12, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
75 38 0.27
76 39 0.28
77 62 0.44
78 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (76 bp):
TATTTATGTAATGACTTTTTTTCCATTTAAGTTATTAATTTTATGGGTTTTTTTGCAATTTAAAT
AGTCAACTTTG
Found at i:14091505 original size:19 final size:19
Alignment explanation
Indices: 14091481--14091536 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
14091471 AATTTTTGAG
14091481 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14091500 GATATGTGCAATCTTGGATAT
1 GATA--TGCAATCTTAGATAT
14091521 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14091537 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14091511 original size:21 final size:21
Alignment explanation
Indices: 14091485--14091543 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
14091475 TTTGAGGATA
14091485 TGCAATCTTAGATATGATATG
1 TGCAATCTTAGATATGATATG
*
14091506 TGCAATCTTGGATATGATA--
1 TGCAATCTTAGATATGATATG
14091525 TGCAATCTTAGA-A-GATATG
1 TGCAATCTTAGATATGATATG
14091544 ATTTTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 11 0.32
21 18 0.53
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (21 bp):
TGCAATCTTAGATATGATATG
Found at i:14092008 original size:9 final size:10
Alignment explanation
Indices: 14091985--14092010 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14091975 GAGCATTTGT
14091985 TTTTTTATTA
1 TTTTTTATTA
14091995 TTTTTTATTA
1 TTTTTTATTA
14092005 TTTTTT
1 TTTTTT
14092011 TCCTTTCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTATTA
Found at i:14092504 original size:4 final size:4
Alignment explanation
Indices: 14092484--14092532 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
14092474 GCTTTGCATG
* *
14092484 TTAT TGAT TTA- TT-T TTAT TTAT TTAT TTAT TTAT TTGT TTAT ATTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT
14092531 TT
1 TT
14092533 CTATGCCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
3 4 0.11
4 30 0.79
5 4 0.11
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:14092528 original size:22 final size:21
Alignment explanation
Indices: 14092484--14092532 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
14092474 GCTTTGCATG
* *
14092484 TTATTGATTTATTTTTATTTA
1 TTATTTATTTATTTTTATATA
14092505 TTTATTTATTTATTTGTT-TATA
1 -TTATTTATTTATTT-TTATATA
14092527 TTATTT
1 TTATTT
14092533 CTATGCCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 6 0.25
22 16 0.67
23 2 0.08
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (21 bp):
TTATTTATTTATTTTTATATA
Found at i:14092580 original size:19 final size:20
Alignment explanation
Indices: 14092539--14092580 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
14092529 ATTTCTATGC
* *
14092539 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
14092559 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
14092578 CAT
1 CAT
14092581 CACATCTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:14092933 original size:27 final size:27
Alignment explanation
Indices: 14092889--14092943 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
14092879 GGCTGCGATT
*
14092889 TTTTAAATCTTGAATAAATGAATATTC
1 TTTTAAATCTTGAATAAACGAATATTC
* * * *
14092916 TTTTAAATTTTTATTAAACGAGTATTC
1 TTTTAAATCTTGAATAAACGAATATTC
14092943 T
1 T
14092944 GGCTTAATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.49
Consensus pattern (27 bp):
TTTTAAATCTTGAATAAACGAATATTC
Found at i:14093579 original size:32 final size:32
Alignment explanation
Indices: 14093543--14093609 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
14093533 TTCAATCTAA
**
14093543 TTAGACTA-TTATCTAAATGTTTTCATAAAAGT
1 TTAGAC-AGTTATCTAAATACTTTCATAAAAGT
14093575 TTAGACAGTTATCTAAATACTTTCATAAAAGT
1 TTAGACAGTTATCTAAATACTTTCATAAAAGT
14093607 TTA
1 TTA
14093610 TATTTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 1 0.03
32 31 0.97
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (32 bp):
TTAGACAGTTATCTAAATACTTTCATAAAAGT
Found at i:14097327 original size:31 final size:30
Alignment explanation
Indices: 14097292--14097378 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 30
14097282 TGTATGATTA
14097292 AATCAAAATTAAAGTTTCAAGTATACATTTG
1 AATCAAAATTAAAGTTTCAAGTATACA-TTG
* *
14097323 AATCACAATTAGAGTTTCACATGTATA-ATTG
1 AATCAAAATTAAAGTTTCA-A-GTATACATTG
* * *
14097354 TA-CCAAATTAAAG-TTCATGTATACA
1 AATCAAAATTAAAGTTTCAAGTATACA
14097379 CTTGCATATT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
27 5 0.11
28 1 0.02
29 4 0.09
30 8 0.17
31 21 0.46
32 2 0.04
33 5 0.11
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (30 bp):
AATCAAAATTAAAGTTTCAAGTATACATTG
Found at i:14097373 original size:27 final size:28
Alignment explanation
Indices: 14097342--14097410 Score: 77
Period size: 31 Copynumber: 2.4 Consensus size: 28
14097332 TAGAGTTTCA
14097342 CATGTATAATTG-TACCAAATTAAAGTT
1 CATGTATAATTGATACCAAATTAAAGTT
** *
14097369 CATGTATACACTTGCATATTAAATTGAAGTT
1 CATGTATA-A-TTG-ATACCAAATTAAAGTT
14097400 CATGTATAATT
1 CATGTATAATT
14097411 TTGATATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 8 0.23
28 1 0.03
29 5 0.14
30 1 0.03
31 20 0.57
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (28 bp):
CATGTATAATTGATACCAAATTAAAGTT
Found at i:14107236 original size:3 final size:3
Alignment explanation
Indices: 14107228--14107254 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14107218 GTATGTTGTG
14107228 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
14107255 ATCAAAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14109542 original size:15 final size:16
Alignment explanation
Indices: 14109513--14109542 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14109503 CAAACATGCT
14109513 TTAACACATTATCAAA
1 TTAACACATTATCAAA
14109529 TTAACACA-TATCAA
1 TTAACACATTATCAA
14109543 CCAGACATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:14110689 original size:25 final size:24
Alignment explanation
Indices: 14110661--14110816 Score: 142
Period size: 25 Copynumber: 6.4 Consensus size: 24
14110651 ATGAGCTATG
* * *
14110661 AATCGATATGCTCTCACGAGCTGTA
1 AATCGGTAAGCTCTCAAGAGCTG-A
*
14110686 AATCGGTAAGCTCAT-ATGAGCTGA
1 AATCGGTAAGCTC-TCAAGAGCTGA
14110710 GAATCGGTAAGCTCTCAAGAGCTGA
1 -AATCGGTAAGCTCTCAAGAGCTGA
14110735 AATCGGTAAGCTCATTC--GAGCTGA
1 AATCGGTAAGCTC--TCAAGAGCTGA
14110759 AATCGGTAAGCTCATTC-A-AGCTGA
1 AATCGGTAAGCTC--TCAAGAGCTGA
* *
14110783 GAATTGGTAAGCTCTCACGAGCTGA
1 -AATCGGTAAGCTCTCAAGAGCTGA
*
14110808 AATCAGTAA
1 AATCGGTAA
14110817 TCCCTAATGA
Statistics
Matches: 114, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
23 2 0.02
24 52 0.46
25 57 0.50
26 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (24 bp):
AATCGGTAAGCTCTCAAGAGCTGA
Found at i:14110724 original size:50 final size:49
Alignment explanation
Indices: 14110645--14110796 Score: 179
Period size: 49 Copynumber: 3.1 Consensus size: 49
14110635 GTACATGTAT
* * *
14110645 GCTCATATGAGCT-ATGAATCGATATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATATGAGCTGA-GAATCGGTAAGCTCTCAAGAGCTG-AAATCGGTAA
14110695 GCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAA
1 GCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAA
*
14110744 GCTCAT-TCGAGCTGA-AATCGGTAAGCTCATTC-A-AGCTGAGAATTGGTAA
1 GCTCATAT-GAGCTGAGAATCGGTAAGCTC--TCAAGAGCTGA-AATCGGTAA
14110793 GCTC
1 GCTC
14110797 TCACGAGCTG
Statistics
Matches: 93, Mismatches: 4, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
48 20 0.22
49 36 0.39
50 36 0.39
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (49 bp):
GCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAA
Found at i:14110781 original size:73 final size:74
Alignment explanation
Indices: 14110677--14110816 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 74
14110667 TATGCTCTCA
* *
14110677 CGAGCTGTAAATCGGTAAGCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGT
1 CGAGCTGTAAATCGGTAAGCTCATATAAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCAGT
14110742 AAGCTCATT
66 AAGCTCATT
* *
14110751 CGAGCTG-AAATCGGTAAGCTCAT-TCAAGCTGAGAATTGGTAAGCTCTCACGAGCTGAAATCAG
1 CGAGCTGTAAATCGGTAAGCTCATAT-AAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCAG
14110814 TAA
65 TAA
14110817 TCCCTAATGA
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
72 1 0.02
73 53 0.87
74 7 0.11
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (74 bp):
CGAGCTGTAAATCGGTAAGCTCATATAAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCAGT
AAGCTCATT
Found at i:14110804 original size:49 final size:48
Alignment explanation
Indices: 14110661--14110816 Score: 174
Period size: 49 Copynumber: 3.2 Consensus size: 48
14110651 ATGAGCTATG
* * * *
14110661 AATCGATATGCTCTCACGAGCTGTAAATCGGTAAGCTCATATGAGCTGA
1 AATCGGTAAGCTCTCAAGAGCTG-AAATCGGTAAGCTCATACGAGCTGA
*
14110710 GAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAAGCTCATTCGAGCTGA
1 -AATCGGTAAGCTCTCAAGAGCTGAAATCGGTAAGCTCATACGAGCTGA
*
14110759 AATCGGTAAGCTCATTC-A-AGCTGAGAATTGGTAAGCTC-TCACGAGCTGA
1 AATCGGTAAGCTC--TCAAGAGCTGA-AATCGGTAAGCTCAT-ACGAGCTGA
*
14110808 AATCAGTAA
1 AATCGGTAA
14110817 TCCCTAATGA
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
48 20 0.21
49 52 0.55
50 22 0.23
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (48 bp):
AATCGGTAAGCTCTCAAGAGCTGAAATCGGTAAGCTCATACGAGCTGA
Found at i:14131822 original size:25 final size:28
Alignment explanation
Indices: 14131770--14131826 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 28
14131760 TGACACATTG
14131770 TTAATATCATGATAATAGTAATAATATT
1 TTAATATCATGATAATAGTAATAATATT
*
14131798 TTAATATTATGAT-A-A-TAATAATATT
1 TTAATATCATGATAATAGTAATAATATT
14131823 TTAA
1 TTAA
14131827 ATAAAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 14 0.50
26 1 0.04
27 1 0.04
28 12 0.43
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (28 bp):
TTAATATCATGATAATAGTAATAATATT
Found at i:14131838 original size:25 final size:25
Alignment explanation
Indices: 14131783--14131834 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
14131773 ATATCATGAT
* * *
14131783 AATAGTAATAATATTTTAATATTAT
1 AATAATAATAATATTTTAATATAAA
*
14131808 GATAATAATAATATTTTAA-ATAAA
1 AATAATAATAATATTTTAATATAAA
14131832 AAT
1 AAT
14131835 TAATTTTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
AATAATAATAATATTTTAATATAAA
Found at i:14139170 original size:59 final size:59
Alignment explanation
Indices: 14139100--14139214 Score: 212
Period size: 59 Copynumber: 1.9 Consensus size: 59
14139090 ATTGTCCCTT
*
14139100 AAACAATATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGCCTC
1 AAACAACATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGCCTC
*
14139159 AAACAACATATTATTTTCAATTCATGAATCTAACTCCTGAAGTTATCTTCTCTTGC
1 AAACAACATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGC
14139215 ACATTCTTCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (59 bp):
AAACAACATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGCCTC
Done.