Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 49 of 228
Found at i:14737949 original size:82 final size:81
Alignment explanation
Indices: 14737812--14738047 Score: 325
Period size: 82 Copynumber: 2.9 Consensus size: 81
14737802 TTTGGGGGCA
* *
14737812 TTTAGAGGCGTTTTTGAAAAAGCGCTACTAATGCTCGAGG-CTTTAGCGGCGTTTTTGAAAAAGC
1 TTTAGCGGCGTTTTTGAAAAAGCGC-GCTAATGCTCG-GGCCTTTAGCGGCGTTTTTGAAAAAGC
*
14737876 GCCGCTAATGCTCGAGCC
64 GCCGCTAATACTCGAGCC
* * *
14737894 TTTAGCGGCGTTTTTGGAAAAGCGACGCTAATACTCGGGCCTTTAGCGGCGTTTTTGGAAAAGCG
1 TTTAGCGGCGTTTTTGAAAAAGCG-CGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAGCG
* *
14737959 ACGCTAATACTCGGGCC
65 CCGCTAATACTCGAGCC
* *
14737976 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT--AGCCTTTAGAGGCGTTTTTGAAAAAGCG
1 TTTAGCGGCGTTTTTGAAAAAGCG-CGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAGCG
14738039 CCGCTAATA
65 CCGCTAATA
14738048 ATAAAATCTA
Statistics
Matches: 137, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
80 33 0.24
81 2 0.01
82 101 0.74
83 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAGCGC
CGCTAATACTCGAGCC
Found at i:14737979 original size:123 final size:121
Alignment explanation
Indices: 14737807--14738047 Score: 360
Period size: 123 Copynumber: 2.0 Consensus size: 121
14737797 GAGTTTTTGG
*
14737807 GGGCATTTAGAGGCGTTTTTGAAAAAGCGCTACTAATGCTCGAGGCTTTAGCGGCGTTTTTGAAA
1 GGGCATTTAGAGGCGTTTTTGAAAAAGCGCTACTAATACTCGAGGCTTTAGCGGCGTTTTTGAAA
* *
14737872 AAGCGCCGCTAATGCTCGAGCCTTTAGCGGCGTTTTTGGAAAAGCGACGCTAATACTC
66 AAGCGCCGCTAATGCT--AGCCTTTAGAGGCGTTTTTGAAAAAGCGACGCTAATACTC
* * * *
14737930 GGGCCTTTAGCGGCGTTTTTGGAAAAGCGAC-GCTAATACTCG-GGCCTTTAGCGGCGTTTTTGA
1 GGGCATTTAGAGGCGTTTTTGAAAAAGCG-CTACTAATACTCGAGG-CTTTAGCGGCGTTTTTGA
*
14737993 AAAAGCGCCGCTAATGCTAGCCTTTAGAGGCGTTTTTGAAAAAGCGCCGCTAATA
64 AAAAGCGCCGCTAATGCTAGCCTTTAGAGGCGTTTTTGAAAAAGCGACGCTAATA
14738048 ATAAAATCTA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
121 34 0.31
122 2 0.02
123 71 0.66
124 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (121 bp):
GGGCATTTAGAGGCGTTTTTGAAAAAGCGCTACTAATACTCGAGGCTTTAGCGGCGTTTTTGAAA
AAGCGCCGCTAATGCTAGCCTTTAGAGGCGTTTTTGAAAAAGCGACGCTAATACTC
Found at i:14739612 original size:24 final size:25
Alignment explanation
Indices: 14739576--14739623 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
14739566 TTAAAATGAA
14739576 TTTTAAAAGATTT-TAAACTTTTAT
1 TTTTAAAAGATTTATAAACTTTTAT
* * *
14739600 TTTTATAATATTTATATACTTTTA
1 TTTTAAAAGATTTATAAACTTTTA
14739624 AAGAAAAGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTTAAAAGATTTATAAACTTTTAT
Found at i:14739899 original size:41 final size:41
Alignment explanation
Indices: 14739842--14739928 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 41
14739832 AAGTTCTATG
14739842 ATTTTGGGCCGACTTTGTTATACGGGCATATCCATATAAAA
1 ATTTTGGGCCGACTTTGTTATACGGGCATATCCATATAAAA
* * *
14739883 ATTTTGGGCTGACTTTGTTATACTGGCTTATCCATATAAAA
1 ATTTTGGGCCGACTTTGTTATACGGGCATATCCATATAAAA
14739924 ATTTT
1 ATTTT
14739929 ATCCATATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (41 bp):
ATTTTGGGCCGACTTTGTTATACGGGCATATCCATATAAAA
Found at i:14743704 original size:43 final size:43
Alignment explanation
Indices: 14743626--14743810 Score: 203
Period size: 43 Copynumber: 4.3 Consensus size: 43
14743616 AGGTTATGTT
* * * *
14743626 TTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGGT-TTGATC
1 TTTAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
14743668 TATAGCGGCGTTTGTGACAAAAAGCGCCACTAAAGGT-TATGTTC
1 TTTAGCGGCGTTTGTG-CAAAAAGCGCCGCTAAAGGTCT-TGGTC
** * *
14743712 TTTAGCGGCGTTTGTGGGAGAAGAGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGGTCTTGGTC
* * * *
14743755 TTTAGCGGCGTTTGTGGAAAAGGCGCCGCTTAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGGTCTTGGTC
14743798 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
14743811 ATTTCTAAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
42 14 0.12
43 87 0.72
44 20 0.17
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGCAAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:14743781 original size:86 final size:86
Alignment explanation
Indices: 14743613--14743810 Score: 274
Period size: 86 Copynumber: 2.3 Consensus size: 86
14743603 TAAATTTTTT
* *
14743613 TAAAGGTTATGTT-TTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGGTTTGATCTATAGCGGC
1 TAAAGGTTATGTTCTTTAGCGGCGTTTGTGCGAGAAGAGCCGCTAAAGGTTTGATCTATAGCGGC
14743677 GTTTGTGACAAAAAGCGCCAC
66 GTTTGTGACAAAAAGCGCCAC
* * *
14743698 TAAAGGTTATGTTCTTTAGCGGCGTTTGTGGGAGAAGAGCCGCTAAAGGTCTTGGTCTTTAGCGG
1 TAAAGGTTATGTTCTTTAGCGGCGTTTGTGCGAGAAGAGCCGCTAAAGGT-TTGATCTATAGCGG
* * *
14743763 CGTTTGTG-GAAAAGGCGCCGC
65 CGTTTGTGACAAAAAGCGCCAC
* * *
14743784 TTAAGGTCATGGTCTTTAGCGGCGTTT
1 TAAAGGTTATGTTCTTTAGCGGCGTTT
14743811 ATTTCTAAAA
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
85 13 0.13
86 67 0.67
87 20 0.20
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (86 bp):
TAAAGGTTATGTTCTTTAGCGGCGTTTGTGCGAGAAGAGCCGCTAAAGGTTTGATCTATAGCGGC
GTTTGTGACAAAAAGCGCCAC
Found at i:14743863 original size:23 final size:23
Alignment explanation
Indices: 14743833--14743878 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14743823 GCCGCAAAAG
14743833 TTAGCACCGCTATCATTAGCGGC
1 TTAGCACCGCTATCATTAGCGGC
14743856 TTAGCACCGCTATCATTAGCGGC
1 TTAGCACCGCTATCATTAGCGGC
14743879 GTTTTTCGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (23 bp):
TTAGCACCGCTATCATTAGCGGC
Found at i:14745603 original size:14 final size:13
Alignment explanation
Indices: 14745569--14745610 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
14745559 TTGCAATAAC
14745569 CATAATAATAAATA
1 CATAATAAT-AATA
14745583 C-TAATAATAATA
1 CATAATAATAATA
14745595 CAGTAATAATAATA
1 CA-TAATAATAATA
14745609 CA
1 CA
14745611 ATTTAACAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.19
13 7 0.27
14 14 0.54
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (13 bp):
CATAATAATAATA
Found at i:14748797 original size:13 final size:13
Alignment explanation
Indices: 14748779--14748804 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14748769 CTCAATTTGC
14748779 TTCATTGCTAGTG
1 TTCATTGCTAGTG
14748792 TTCATTGCTAGTG
1 TTCATTGCTAGTG
14748805 CTAACTGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (13 bp):
TTCATTGCTAGTG
Found at i:14751831 original size:11 final size:11
Alignment explanation
Indices: 14751815--14751840 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14751805 TACTAAATAA
14751815 AATAATAAAAT
1 AATAATAAAAT
14751826 AATAATAAAAT
1 AATAATAAAAT
14751837 AATA
1 AATA
14751841 TTTAAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:14752505 original size:15 final size:15
Alignment explanation
Indices: 14752470--14752508 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
14752460 TACTTCGTCA
14752470 CCTCAACCTACTGCT
1 CCTCAACCTACTGCT
*
14752485 CATCAACCTACTG-T
1 CCTCAACCTACTGCT
14752499 CCCTCAACCT
1 -CCTCAACCT
14752509 GCTACCCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 1 0.05
15 20 0.95
ACGTcount: A:0.23, C:0.46, G:0.05, T:0.26
Consensus pattern (15 bp):
CCTCAACCTACTGCT
Found at i:14757804 original size:19 final size:20
Alignment explanation
Indices: 14757780--14757821 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14757770 ATATTTTTAT
14757780 TTTTTTGTA-ATGTTAAATA
1 TTTTTTGTATATGTTAAATA
* *
14757799 TTTTTTGTATATTTTAATTA
1 TTTTTTGTATATGTTAAATA
14757819 TTT
1 TTT
14757822 AATTAGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTTTTGTATATGTTAAATA
Found at i:14760443 original size:18 final size:17
Alignment explanation
Indices: 14760411--14760444 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14760401 ATCCAGAAAG
*
14760411 CAGATCATTCAGTTTAA
1 CAGATCATGCAGTTTAA
14760428 CAGATCATAGCAGTTTA
1 CAGATCAT-GCAGTTTA
14760445 GATAGATGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (17 bp):
CAGATCATGCAGTTTAA
Found at i:14769140 original size:22 final size:22
Alignment explanation
Indices: 14769115--14769157 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14769105 TCCCATTGTT
14769115 TTGCTGCCATTTCACTATTATG
1 TTGCTGCCATTTCACTATTATG
* * *
14769137 TTGCTTCCATTTTATTATTAT
1 TTGCTGCCATTTCACTATTAT
14769158 TGTTTAGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.09, T:0.53
Consensus pattern (22 bp):
TTGCTGCCATTTCACTATTATG
Found at i:14769322 original size:18 final size:18
Alignment explanation
Indices: 14769301--14769342 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14769291 GAAATATTTA
*
14769301 TTTTAATGT-TTTTAGTAT
1 TTTTAATGTATTATA-TAT
*
14769319 TTTTGATGTATTATATAT
1 TTTTAATGTATTATATAT
14769337 TTTTAA
1 TTTTAA
14769343 AAAATTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTTAATGTATTATATAT
Found at i:14775791 original size:58 final size:58
Alignment explanation
Indices: 14775683--14775796 Score: 137
Period size: 58 Copynumber: 1.9 Consensus size: 58
14775673 AGTTTAATAC
*
14775683 TAAATTAATATAATAATTATCAAGATAAATATTAGATTAAATTTAATATTA-AATCTAT
1 TAAATTAATAGAATAATTATCAAGATAAATATTAGATTAAATTT-ATATTACAATCTAT
*
14775741 TAAATTAATAGAATATTTATCTACAAGATAAATATTCA-ATTAAA-TT-TATTACAATC
1 TAAATTAATAGAATAATTA--T-CAAGATAAATATT-AGATTAAATTTATATTACAATC
14775797 ACATTAATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
58 22 0.45
59 4 0.08
60 3 0.06
61 19 0.39
62 1 0.02
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (58 bp):
TAAATTAATAGAATAATTATCAAGATAAATATTAGATTAAATTTATATTACAATCTAT
Found at i:14779605 original size:28 final size:28
Alignment explanation
Indices: 14779522--14779610 Score: 133
Period size: 28 Copynumber: 3.2 Consensus size: 28
14779512 ATTTTAATGA
*
14779522 AGACCACTATTACTGAATGTCTCTACGA
1 AGACCACTATTACTGAATGTCTCTACGG
* *
14779550 AAACCACTATTACTAAATGTCTCTACGG
1 AGACCACTATTACTGAATGTCTCTACGG
* *
14779578 AGACCACTGTTACTGTATGTCTCTACGG
1 AGACCACTATTACTGAATGTCTCTACGG
14779606 AGACC
1 AGACC
14779611 CTGGTGTGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (28 bp):
AGACCACTATTACTGAATGTCTCTACGG
Found at i:14780024 original size:20 final size:21
Alignment explanation
Indices: 14779973--14780025 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
14779963 AGTTAAATCA
14779973 ATAGGTATCGATACTAAACTT
1 ATAGGTATCGATACTAAACTT
* ***
14779994 ATA-GTACCGATACTTCTCTT
1 ATAGGTATCGATACTAAACTT
14780014 -TAGGTATCGATA
1 ATAGGTATCGATA
14780026 ACTTACCTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (21 bp):
ATAGGTATCGATACTAAACTT
Found at i:14781133 original size:22 final size:22
Alignment explanation
Indices: 14781105--14781150 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
14781095 GAAACCACAC
14781105 CAGAGAGCACT-ATAGTGCTAAG
1 CAGAGAGCACTGA-AGTGCTAAG
*
14781127 CAGAGAGCATTGAAGTGCTAAG
1 CAGAGAGCACTGAAGTGCTAAG
14781149 CA
1 CA
14781151 AAACGCAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (22 bp):
CAGAGAGCACTGAAGTGCTAAG
Found at i:14782878 original size:15 final size:15
Alignment explanation
Indices: 14782858--14782893 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
14782848 TTCCCTTCCC
14782858 TATAGATATCCAACT
1 TATAGATATCCAACT
*
14782873 TATAGATATTCAACT
1 TATAGATATCCAACT
14782888 TATAGA
1 TATAGA
14782894 ACGTGTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (15 bp):
TATAGATATCCAACT
Found at i:14785942 original size:21 final size:20
Alignment explanation
Indices: 14785903--14785942 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14785893 CTCACATGCC
*
14785903 AAAGTGAAAAATTAGTTTTT
1 AAAGTGAAAAATGAGTTTTT
14785923 AAAGTGAAAAACTGA-TTTTT
1 AAAGTGAAAAA-TGAGTTTTT
14785943 GTGGCCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.38
Consensus pattern (20 bp):
AAAGTGAAAAATGAGTTTTT
Found at i:14797149 original size:27 final size:27
Alignment explanation
Indices: 14796710--14797152 Score: 483
Period size: 27 Copynumber: 16.4 Consensus size: 27
14796700 AACCTTATCA
* * * *
14796710 GTCATTTTATCTTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
14796737 GTCATTTAAACCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
14796764 ATCATTCTACCCTTTGGAGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
14796791 GTCATTCTACCCTATGGAGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14796818 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
14796845 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
14796872 GTCAATTTATCCTATGGAGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * **
14796899 ATCATTCTACCCTTTGGAGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
14796926 GTCATTCTACCCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
14796953 ATCATTCTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14796980 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
14797007 GTCAATTTATCCTATGGGCGTATTTAG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
14797034 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
14797061 GTCATTTTACCCTATGAGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14797088 GTCATTTTACCCTATTGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
14797115 ATCATTTTACCC-ACTGGGGGTATTTTG
1 GTCATTTTACCCTA-TGGGGGTATTTCG
14797142 GTCATTTTACC
1 GTCATTTTACC
14797153 TATTTTTGGG
Statistics
Matches: 355, Mismatches: 60, Indels: 2
0.85 0.14 0.00
Matches are distributed among these distances:
26 1 0.00
27 354 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:14802196 original size:26 final size:26
Alignment explanation
Indices: 14802167--14802221 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14802157 AGATACACGA
14802167 AACCGATAGGAGACTCAATCGTGTAT
1 AACCGATAGGAGACTCAATCGTGTAT
**
14802193 AACCGATAGGAGACTCGGTCGTGTAT
1 AACCGATAGGAGACTCAATCGTGTAT
14802219 AAC
1 AAC
14802222 TTTGATACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
AACCGATAGGAGACTCAATCGTGTAT
Found at i:14805902 original size:29 final size:29
Alignment explanation
Indices: 14805870--14805935 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
14805860 CATCACCATT
*
14805870 CTTTTCATAATCGATAGCCAAAGCTATTC
1 CTTTTCATAATCGATAGCCAAAGCTATCC
* *
14805899 CTTTTCATAATTGATAGCTAAAGCTATCC
1 CTTTTCATAATCGATAGCCAAAGCTATCC
*
14805928 CATTTCAT
1 CTTTTCAT
14805936 TGGTCGATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (29 bp):
CTTTTCATAATCGATAGCCAAAGCTATCC
Found at i:14806914 original size:21 final size:21
Alignment explanation
Indices: 14806889--14806941 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
14806879 AATTAACTAT
*
14806889 CGAAACGTTAACATTTTTCAA
1 CGAAACGTTAAAATTTTTCAA
*
14806910 TGAAACGTTAAAATTTTTCAA
1 CGAAACGTTAAAATTTTTCAA
14806931 CGAAACGTTAA
1 CGAAACGTTAA
14806942 TACCACCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (21 bp):
CGAAACGTTAAAATTTTTCAA
Found at i:14813178 original size:40 final size:39
Alignment explanation
Indices: 14813094--14813278 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
14813084 TTGAATGATG
* * *
14813094 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
14813134 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14813174 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
14813213 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
14813254 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
14813279 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14813300 original size:79 final size:79
Alignment explanation
Indices: 14813147--14813311 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
14813137 GGACTAAGAT
* ** * *
14813147 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
14813212 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
14813226 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
14813289 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
14813305 CCGAAGG
1 CCGAAGG
14813312 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:14815141 original size:30 final size:29
Alignment explanation
Indices: 14815088--14815170 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 29
14815078 GATGGTTGAA
*
14815088 ACCATCCCTTTTCATATTCGATGGTCGTC
1 ACCATCCCTTTTCATAATCGATGGTCGTC
* *
14815117 ACCATCACTTTTCATTAATCGATGGTTGTC
1 ACCATCCCTTTTCA-TAATCGATGGTCGTC
14815147 ACCATCCCTTTTCATAATCGATGG
1 ACCATCCCTTTTCATAATCGATGG
14815171 CTGAAGCTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 23 0.47
30 26 0.53
ACGTcount: A:0.22, C:0.28, G:0.13, T:0.37
Consensus pattern (29 bp):
ACCATCCCTTTTCATAATCGATGGTCGTC
Found at i:14815186 original size:29 final size:29
Alignment explanation
Indices: 14815150--14815219 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
14815140 GGTTGTCACC
*
14815150 ATCCCTTTTCATAATCGATGGCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCTGAAGCT
* * *
14815179 ATCTCTTTTCATAATTGATAGTTGAAGCT
1 ATCCCTTTTCATAATCGATAGCTGAAGCT
14815208 ATCCCTTTTCAT
1 ATCCCTTTTCAT
14815220 TGGTTGATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCTGAAGCT
Found at i:14815187 original size:59 final size:59
Alignment explanation
Indices: 14815077--14815219 Score: 157
Period size: 59 Copynumber: 2.4 Consensus size: 59
14815067 GTGTGCTAAA
* *
14815077 CGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCACTTTTCATTAAT
1 CGATGGTTGAAACCATCCCTTTTCATAATCGATGGTCGTAACCATCACTTTTCATTAAT
** * *
14815136 CGATGGTTGTCACCATCCCTTTTCATAATCGATGG-C-TGAAGCTATCTCTTTTCA-TAAT
1 CGATGGTTGAAACCATCCCTTTTCATAATCGATGGTCGT-AA-CCATCACTTTTCATTAAT
* * * *
14815194 TGATAGTTGAAGCTATCCCTTTTCAT
1 CGATGGTTGAAACCATCCCTTTTCAT
14815220 TGGTTGATGA
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
57 1 0.01
58 26 0.37
59 43 0.61
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (59 bp):
CGATGGTTGAAACCATCCCTTTTCATAATCGATGGTCGTAACCATCACTTTTCATTAAT
Found at i:14820158 original size:10 final size:10
Alignment explanation
Indices: 14820143--14820172 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14820133 TTTTGGCATC
14820143 AAATTTTCTT
1 AAATTTTCTT
*
14820153 AAATTTTCCT
1 AAATTTTCTT
14820163 AAATTTTCTT
1 AAATTTTCTT
14820173 TTCCATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (10 bp):
AAATTTTCTT
Found at i:14824072 original size:21 final size:23
Alignment explanation
Indices: 14824018--14824073 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 23
14824008 GTTTGGGTTG
*
14824018 TATCGGTAGAA--CCCAAAGTTG
1 TATCGGTAGAATTCCCAAAGTTC
*
14824039 TATCGATAGAATTCCC-AA-TTC
1 TATCGGTAGAATTCCCAAAGTTC
14824060 TATCGGTAGAATTC
1 TATCGGTAGAATTC
14824074 TGTAGCCTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 25 0.83
22 2 0.07
23 3 0.10
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (23 bp):
TATCGGTAGAATTCCCAAAGTTC
Found at i:14827205 original size:27 final size:24
Alignment explanation
Indices: 14827148--14827197 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14827138 CGGAGGAAAA
14827148 GTAAAGCTTTTTTTCCTTCTAATG
1 GTAAAGCTTTTTTTCCTTCTAATG
14827172 GTAAAGCTTTTTTTCCTTCTAATG
1 GTAAAGCTTTTTTTCCTTCTAATG
14827196 GT
1 GT
14827198 GAAAAAGCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (24 bp):
GTAAAGCTTTTTTTCCTTCTAATG
Found at i:14827231 original size:3 final size:3
Alignment explanation
Indices: 14827225--14827250 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14827215 AATAAAGTAG
14827225 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
14827251 GATTTCTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:14827975 original size:5 final size:6
Alignment explanation
Indices: 14827942--14827976 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
14827932 TTTTATTTTC
14827942 TTTTAT TTTTAT TTTTAT TTTTATT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTT
14827977 GTAATTCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:14834116 original size:16 final size:18
Alignment explanation
Indices: 14834082--14834118 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
14834072 AAATAATGAA
14834082 AAATAATATTATTTCAATT
1 AAATAATA-TATTTCAATT
14834101 AAATAATA-ATTT-AATT
1 AAATAATATATTTCAATT
14834117 AA
1 AA
14834119 TTATCAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
19 8 0.44
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATAATATATTTCAATT
Found at i:14835055 original size:20 final size:20
Alignment explanation
Indices: 14835030--14835070 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14835020 TTTATTGAGG
* *
14835030 TTAAAATATGAAATAAGTTT
1 TTAAAAAATCAAATAAGTTT
*
14835050 TTAAAAAATCAATTAAGTTT
1 TTAAAAAATCAAATAAGTTT
14835070 T
1 T
14835071 CATTAAAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (20 bp):
TTAAAAAATCAAATAAGTTT
Found at i:14836360 original size:30 final size:29
Alignment explanation
Indices: 14836317--14836389 Score: 101
Period size: 30 Copynumber: 2.5 Consensus size: 29
14836307 ATGATATGGA
* *
14836317 AGGCTTAAATGATTTTATATTATTTTACG
1 AGGCTTAATTGATTTTATATTATTTTACC
*
14836346 AGGTCTTAATTGATTTTTTATTATTTTACC
1 AGG-CTTAATTGATTTTATATTATTTTACC
*
14836376 CGGCTTAATTGATT
1 AGGCTTAATTGATT
14836390 ATTTAAGTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 14 0.36
30 25 0.64
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.51
Consensus pattern (29 bp):
AGGCTTAATTGATTTTATATTATTTTACC
Found at i:14837227 original size:15 final size:15
Alignment explanation
Indices: 14837207--14837236 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14837197 AATGTATTTG
14837207 ATAATAAAAATAAAA
1 ATAATAAAAATAAAA
*
14837222 ATAATAAAATTAAAA
1 ATAATAAAAATAAAA
14837237 TTTATATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
ATAATAAAAATAAAA
Found at i:14841491 original size:32 final size:31
Alignment explanation
Indices: 14841450--14841526 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
14841440 CCCACATATT
* *
14841450 CGTGTGGCCCACACGC-CTAGATTGGCCTTGCC
1 CGTGTGGCCCACACGCTC-A-ACTGGCCTAGCC
14841482 CGTGTGGCCCACACGCTCAACTGGCCTAGCC
1 CGTGTGGCCCACACGCTCAACTGGCCTAGCC
*
14841513 CGTATGG-CCACACG
1 CGTGTGGCCCACACG
14841527 ACTACACTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
30 7 0.17
31 16 0.39
32 17 0.41
33 1 0.02
ACGTcount: A:0.16, C:0.39, G:0.27, T:0.18
Consensus pattern (31 bp):
CGTGTGGCCCACACGCTCAACTGGCCTAGCC
Found at i:14841514 original size:31 final size:32
Alignment explanation
Indices: 14841450--14841526 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 32
14841440 CCCACATATT
* *
14841450 CGTGTGGCCCACACGCCTAGATTGGCCTTGCC
1 CGTGTGGCCCACACGCCTAGACTGGCCTAGCC
14841482 CGTGTGGCCCACACG-CTCA-ACTGGCCTAGCC
1 CGTGTGGCCCACACGCCT-AGACTGGCCTAGCC
*
14841513 CGTATGG-CCACACG
1 CGTGTGGCCCACACG
14841527 ACTACACTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
30 7 0.17
31 18 0.44
32 16 0.39
ACGTcount: A:0.16, C:0.39, G:0.27, T:0.18
Consensus pattern (32 bp):
CGTGTGGCCCACACGCCTAGACTGGCCTAGCC
Found at i:14847322 original size:103 final size:104
Alignment explanation
Indices: 14847215--14847494 Score: 321
Period size: 103 Copynumber: 2.6 Consensus size: 104
14847205 ATATACGAAA
*
14847215 AAAAACAAAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCCGGCACCCAACAGTAAAATTTTT
1 AAAAA-AAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAATTTTT
* * *
14847280 TTT-A-TTTTTTTCGTGTCAGAATCAGATATAAAAATAAG
65 TTTAATTTTTTTTCCTGTCAAAATCAGATAGAAAAATAAG
* *
14847318 AAAAAAAATAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTT
1 AAAAAAAA-AAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAA-ATTTT
* *
14847383 TTTTGAATTTTTTCTTTTTTTTCCTGTCAAAATCAGATAGAAATATACG
64 TTTT-AA-------TTTTTTTTCCTGTCAAAATCAGATAGAAAAATAAG
* *
14847432 AAAAAAGTAAAAAAAATCTTTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAAAA
1 AAAAAA--AAAAAAAA--ATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAA
14847495 AAAAAATTGA
Statistics
Matches: 149, Mismatches: 12, Indels: 19
0.83 0.07 0.11
Matches are distributed among these distances:
102 3 0.02
103 53 0.36
104 8 0.05
106 1 0.01
114 35 0.23
115 6 0.04
116 2 0.01
117 41 0.28
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (104 bp):
AAAAAAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAAATTTTTT
TTAATTTTTTTTCCTGTCAAAATCAGATAGAAAAATAAG
Found at i:14847511 original size:117 final size:113
Alignment explanation
Indices: 14847273--14847552 Score: 346
Period size: 117 Copynumber: 2.4 Consensus size: 113
14847263 CCAACAGTAA
* *
14847273 AATTTTTTTTATTTTTTTCGTGTCAGAATCAGATATAAAAATAAGAAAAAAAATAAAAAAAATTT
1 AATTTTTTTT-TTTTTTTCGTGTCAGAATCAGATATAAATATACG-AAAAAAATAAAAAAAATTT
* *******
14847338 TGGGTGCTGGCCTGTCAATGGCCGGCACCCAACAGTAAATTTTTTTTTTG
64 TGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAAATAAAAAAATTG
* * * * *
14847388 AATTTTTTCTTTTTTTTCCTGTCAAAATCAGATAGAAATATACGAAAAAAGTAAAAAAAATCTTT
1 AATTTTTTTTTTTTTTTCGTGTCAGAATCAGATATAAATATACGAAAAAAATAAAAAAAA----T
14847453 TTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAAA-AAAAAAATTG
62 TTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAAATAAAAAAATTG
14847504 AATTTTTTCTTTTTTTTTTCGTGTCAGAATCAGATATAAATATACGAAA
1 AA-TTTTT-TTTTTTTTTTCGTGTCAGAATCAGATATAAATATACGAAA
14847553 TACTTTTTTC
Statistics
Matches: 140, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
113 15 0.11
114 29 0.21
115 9 0.06
116 5 0.04
117 46 0.33
118 36 0.26
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (113 bp):
AATTTTTTTTTTTTTTTCGTGTCAGAATCAGATATAAATATACGAAAAAAATAAAAAAAATTTTG
GGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAAATAAAAAAATTG
Found at i:14847686 original size:115 final size:114
Alignment explanation
Indices: 14847553--14848044 Score: 595
Period size: 115 Copynumber: 4.4 Consensus size: 114
14847543 ATATACGAAA
14847553 TACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAAAGAAAAAATTCAAAAAAAAAAT
1 TACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAAA-AAAAAATTCAAAAAAAAAAT
*
14847618 TTACTGTTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTT
65 TTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT
******
14847668 TACTTTTTTCGTATATTTATATCTGATTCTGACACG------AAAAAAAATTCAAAATTTTTTTT
1 TACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAAAAAAAAATTCAAAAAAAAAATT
*
14847727 TACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAGGATTTTTTTT
66 TACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAA--TTTTTTTTT
**
14847779 TACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAAAAAAGAAAAAATT-TTAAAAAA
1 TACTTTTTTCGTATATTTATATCTGATTCTGACACG---AAAAAAAA-AAAAAATTCAAAAAAAA
** *
14847843 TTTTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTT
62 AATTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT
* *
14847896 TAATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAATAAAAAAATTC--AAAAAAAA
1 T-ACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAA-AAAAAAATTCAAAAAAAAAA
* * * *
14847959 TTTACCGTTGGGTGCTGGCCATTGACAGGCTAGCACCCAAAA-----ATTT
64 TTTACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT
*
14848005 T--TTTTTTCGTATTTTTATATCTGATTCTGACAC-AAAAAAA
1 TACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAA
14848045 TAATTTTTTT
Statistics
Matches: 336, Mismatches: 25, Indels: 42
0.83 0.06 0.10
Matches are distributed among these distances:
105 7 0.02
106 32 0.10
108 50 0.15
109 10 0.03
111 44 0.13
114 44 0.13
115 51 0.15
116 1 0.00
117 9 0.03
118 33 0.10
119 4 0.01
120 43 0.13
121 8 0.02
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (114 bp):
TACTTTTTTCGTATATTTATATCTGATTCTGACACGAAAAAAAAAAAAAATTCAAAAAAAAAATT
TACTGTTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTT
Found at i:14850528 original size:19 final size:19
Alignment explanation
Indices: 14850464--14850530 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
14850454 AAAATGATAT
* * *
14850464 TTAAAGATAACTAAATTACA
1 TTAAA-ATAAATAAATAAAA
** *
14850484 TTAAAATATTTAAATATAA
1 TTAAAATAAATAAATAAAA
14850503 TGT-AAATAAATAAATAAAA
1 T-TAAAATAAATAAATAAAA
14850522 TTAAAATAA
1 TTAAAATAA
14850531 CCAAAAACTG
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
18 1 0.03
19 30 0.81
20 6 0.16
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
TTAAAATAAATAAATAAAA
Found at i:14857934 original size:12 final size:12
Alignment explanation
Indices: 14857917--14857946 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14857907 TTAGAGTATT
14857917 ACACGGGCAGGG
1 ACACGGGCAGGG
*
14857929 ACACGGGCTGGG
1 ACACGGGCAGGG
14857941 ACACGG
1 ACACGG
14857947 TCGTGTGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.27, G:0.47, T:0.03
Consensus pattern (12 bp):
ACACGGGCAGGG
Found at i:14864415 original size:14 final size:15
Alignment explanation
Indices: 14864392--14864434 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14864382 GTGTGAACTG
14864392 TGATATATGTTTGAA
1 TGATATATGTTTGAA
**
14864407 TGA-ATATGTGTTTTA
1 TGATATATGT-TTGAA
14864422 TGATATATGTTTG
1 TGATATATGTTTG
14864435 TGTGGGTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 6 0.26
15 11 0.48
16 6 0.26
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (15 bp):
TGATATATGTTTGAA
Found at i:14865781 original size:22 final size:22
Alignment explanation
Indices: 14865756--14865809 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
14865746 ACAGTCAGTC
*
14865756 ACGTCGTGATGACGAACACTCA
1 ACGTCGCGATGACGAACACTCA
14865778 ACGTCGCGATGACGAACACTCA
1 ACGTCGCGATGACGAACACTCA
14865800 ACGTCGCGAT
1 ACGTCGCGAT
14865810 AATGTATTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.24, T:0.17
Consensus pattern (22 bp):
ACGTCGCGATGACGAACACTCA
Found at i:14866417 original size:22 final size:24
Alignment explanation
Indices: 14866387--14866431 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
14866377 ACTCTCCTTA
14866387 ATTACATA-TATAA-TAAAAAAATC
1 ATTACATATTA-AAGTAAAAAAATC
14866410 ATTA-ATATTAAAGTAAAAAAAT
1 ATTACATATTAAAGTAAAAAAAT
14866432 TCTAAGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (24 bp):
ATTACATATTAAAGTAAAAAAATC
Found at i:14867099 original size:16 final size:16
Alignment explanation
Indices: 14867062--14867095 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14867052 AAAAAAAATA
14867062 TTTTAAATAATTATAT
1 TTTTAAATAATTATAT
14867078 TTTTAAA-AATTA-AT
1 TTTTAAATAATTATAT
14867092 TTTT
1 TTTT
14867096 TTAAGTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTTAAATAATTATAT
Found at i:14868542 original size:31 final size:31
Alignment explanation
Indices: 14868499--14868557 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
14868489 TGAACTTAGA
14868499 TGTCAAGTTCAGGGGCCATTGTGGACCTACT
1 TGTCAAGTTCAGGGGCCATTGTGGACCTACT
*
14868530 TGTCTAGTTCAGGGGCCATTGTGGACCT
1 TGTCAAGTTCAGGGGCCATTGTGGACCT
14868558 CCCTTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.31
Consensus pattern (31 bp):
TGTCAAGTTCAGGGGCCATTGTGGACCTACT
Found at i:14882605 original size:18 final size:19
Alignment explanation
Indices: 14882568--14882605 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14882558 ACTTGGAATT
*
14882568 TCTTTTAAATGGATATTTTA
1 TCTTTTAAAT-GAAATTTTA
14882588 TCTTTTAAAT-AAATTTTA
1 TCTTTTAAATGAAATTTTA
14882606 AAAGGGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (19 bp):
TCTTTTAAATGAAATTTTA
Found at i:14883919 original size:20 final size:19
Alignment explanation
Indices: 14883877--14883919 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
14883867 TTACAATGAT
* *
14883877 TTTAATATTTAAAATATAG
1 TTTAATATTTAAAATAAAA
14883896 TTTATATATTTAAAATAAAA
1 TTTA-ATATTTAAAATAAAA
14883916 TTTA
1 TTTA
14883920 CAAATAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TTTAATATTTAAAATAAAA
Found at i:14886705 original size:34 final size:35
Alignment explanation
Indices: 14886661--14886727 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
14886651 CAGTAAAATA
*
14886661 TTTTCCGTAAAATGATTT-CAGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACAGGAAAATATTTTAC
* *
14886695 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACAGGAAAATATTTT
14886728 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACAGGAAAATATTTTAC
Found at i:14888508 original size:20 final size:18
Alignment explanation
Indices: 14888474--14888510 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
14888464 ATATTATTTA
14888474 TGATTTATTAAATAAAAG
1 TGATTTATTAAATAAAAG
14888492 TGATATTATTCAAATAAAA
1 TGAT-TTATT-AAATAAAA
14888511 TGTTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (18 bp):
TGATTTATTAAATAAAAG
Found at i:14890729 original size:29 final size:29
Alignment explanation
Indices: 14890650--14890733 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
14890640 AAGGTGTTCC
* **
14890650 TTTAACAGAGATGGCCACAAAAACATCCT
1 TTTAACAGAGATAGCCACAAAGGCATCCT
*
14890679 TTTAACAGAGGTAGCCACAAAGGCATCCT
1 TTTAACAGAGATAGCCACAAAGGCATCCT
* *
14890708 TTTAACTGAGATCGCCACAAAGGCAT
1 TTTAACAGAGATAGCCACAAAGGCAT
14890734 TCATTTCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (29 bp):
TTTAACAGAGATAGCCACAAAGGCATCCT
Found at i:14890785 original size:29 final size:29
Alignment explanation
Indices: 14890697--14890786 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 29
14890687 AGGTAGCCAC
* * * * * *
14890697 AAAGGCATCCTTTTAACTGAGATCGCCAC
1 AAAGGCATTCATTTAACTAAGATAGACAA
* *
14890726 AAAGGCATTCATTTCACTAAGA-AAACTAA
1 AAAGGCATTCATTTAACTAAGATAGAC-AA
* *
14890755 AAAGGCGTTCGTTTAACTAAGATAGACAA
1 AAAGGCATTCATTTAACTAAGATAGACAA
14890784 AAA
1 AAA
14890787 AAGCTTCTTT
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
28 1 0.02
29 43 0.91
30 3 0.06
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (29 bp):
AAAGGCATTCATTTAACTAAGATAGACAA
Found at i:14895113 original size:48 final size:48
Alignment explanation
Indices: 14895039--14895134 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
14895029 TAGGAAATAT
* * *
14895039 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATAACTCTGTAGGTGATAAATGTTATGTA
* *
14895087 TTGAAAATAGTAAGTTAATATAACTCTGTAGGTGTTAAATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATAACTCTGTAGGTGATAAATGTTATGTA
14895135 CAATTGTTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (48 bp):
TTGAAAAGAGTAAGTTAATATAACTCTGTAGGTGATAAATGTTATGTA
Found at i:14903718 original size:16 final size:17
Alignment explanation
Indices: 14903697--14903739 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
14903687 TTAATCACTT
14903697 TAATATTAAATT-AATA
1 TAATATTAAATTCAATA
* *
14903713 TAATATT-TATTCAATT
1 TAATATTAAATTCAATA
14903729 TAATATTAAAT
1 TAATATTAAAT
14903740 CTTATTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 3 0.14
16 17 0.77
17 2 0.09
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATTAAATTCAATA
Found at i:14906503 original size:30 final size:30
Alignment explanation
Indices: 14906448--14906509 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
14906438 CACTAAGCAA
14906448 GTTTCATATACATGTATCATCCATTT-CAT
1 GTTTCATATACATGTATCATCCATTTCCAT
14906477 GTTTCAATATATCATGTAAT-AT-CATTTCCAT
1 GTTTC-ATATA-CATGT-ATCATCCATTTCCAT
14906508 GT
1 GT
14906510 ATTTCATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 10 0.34
31 12 0.41
32 2 0.07
ACGTcount: A:0.29, C:0.18, G:0.08, T:0.45
Consensus pattern (30 bp):
GTTTCATATACATGTATCATCCATTTCCAT
Found at i:14909191 original size:32 final size:32
Alignment explanation
Indices: 14909150--14909220 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
14909140 GCTTGTGTGA
* *
14909150 GCCCACACACTCGGATTGGCCTTACCCGTATG
1 GCCCACACACCCGGATTGGCCTTACCCATATG
* *
14909182 GCCCACACACCCGGATTGGTCTTGCCCATATG
1 GCCCACACACCCGGATTGGCCTTACCCATATG
14909214 G-CCACAC
1 GCCCACAC
14909221 GGCTTGGCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
31 6 0.17
32 29 0.83
ACGTcount: A:0.20, C:0.39, G:0.21, T:0.20
Consensus pattern (32 bp):
GCCCACACACCCGGATTGGCCTTACCCATATG
Found at i:14910682 original size:13 final size:12
Alignment explanation
Indices: 14910642--14910683 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
14910632 TTTTTAATCA
14910642 AATATATAT-TT
1 AATATATATATT
*
14910653 TATATATATATT
1 AATATATATATT
14910665 AAATATATATATGT
1 -AATATATATAT-T
14910679 AATAT
1 AATAT
14910684 GGGTCGGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 8 0.31
12 2 0.08
13 15 0.58
14 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (12 bp):
AATATATATATT
Found at i:14911569 original size:37 final size:37
Alignment explanation
Indices: 14911525--14911600 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
14911515 AAAATTTGTG
*
14911525 TCCTATCCTTCCTCTCCTTAAGCTTATATACAAATTA
1 TCCTATCCTCCCTCTCCTTAAGCTTATATACAAATTA
* *
14911562 TCCTATCCTCCCTCTCCTTTAGCTTATATTCAAATTA
1 TCCTATCCTCCCTCTCCTTAAGCTTATATACAAATTA
14911599 TC
1 TC
14911601 TAGTCTAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.32, G:0.03, T:0.42
Consensus pattern (37 bp):
TCCTATCCTCCCTCTCCTTAAGCTTATATACAAATTA
Found at i:14928345 original size:18 final size:18
Alignment explanation
Indices: 14928318--14928357 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
14928308 TACATGAAAC
*
14928318 AAAAATAG-AAAAGGCTG
1 AAAAATAGAAAAAAGCTG
14928335 AAAAATGAGAAAAAAGCTG
1 AAAAAT-AGAAAAAAGCTG
14928354 AAAA
1 AAAA
14928358 TATTTTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 2 0.10
19 12 0.60
ACGTcount: A:0.65, C:0.05, G:0.20, T:0.10
Consensus pattern (18 bp):
AAAAATAGAAAAAAGCTG
Found at i:14947215 original size:25 final size:24
Alignment explanation
Indices: 14947152--14947218 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 24
14947142 CAACCCGAAT
*
14947152 TATATATTAAATATATATTTTTTA
1 TATATATTAAATATATATTTTATA
* * *
14947176 TTTTTAATCAAATATATATTTTATA
1 TATAT-ATTAAATATATATTTTATA
14947201 TATATATT-AATATATATT
1 TATATATTAAATATATATT
14947219 GTAATATGGT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
23 10 0.29
24 5 0.14
25 20 0.57
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (24 bp):
TATATATTAAATATATATTTTATA
Found at i:14947223 original size:12 final size:11
Alignment explanation
Indices: 14947186--14947225 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
14947176 TTTTTAATCA
14947186 AATATATATTT
1 AATATATATTT
*
14947197 TATATATATATT
1 AATATATAT-TT
14947209 AATATATATTGT
1 AATATATATT-T
14947221 AATAT
1 AATAT
14947226 GGTCGGGCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (11 bp):
AATATATATTT
Found at i:14948088 original size:37 final size:37
Alignment explanation
Indices: 14948044--14948119 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
14948034 AAAATTTGTG
*
14948044 TCCTATCCTTCCTCTCCTTAAGCTTATATACAAATTA
1 TCCTATCCTCCCTCTCCTTAAGCTTATATACAAATTA
* *
14948081 TCCTATCCTCCCTCTCCTTTAGCTTATATTCAAATTA
1 TCCTATCCTCCCTCTCCTTAAGCTTATATACAAATTA
14948118 TC
1 TC
14948120 TAGTCTAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.32, G:0.03, T:0.42
Consensus pattern (37 bp):
TCCTATCCTCCCTCTCCTTAAGCTTATATACAAATTA
Found at i:14964873 original size:18 final size:18
Alignment explanation
Indices: 14964846--14964885 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
14964836 TACATGAAAC
*
14964846 AAAAATAG-AAAAGGCTG
1 AAAAATAGAAAAAAGCTG
14964863 AAAAATGAGAAAAAAGCTG
1 AAAAAT-AGAAAAAAGCTG
14964882 AAAA
1 AAAA
14964886 TATTTTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 2 0.10
19 12 0.60
ACGTcount: A:0.65, C:0.05, G:0.20, T:0.10
Consensus pattern (18 bp):
AAAAATAGAAAAAAGCTG
Found at i:14976541 original size:7 final size:7
Alignment explanation
Indices: 14976526--14976559 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
14976516 ATTAAATAAT
14976526 TATTATA
1 TATTATA
*
14976533 TACTATA
1 TATTATA
14976540 TATTATA
1 TATTATA
14976547 TATTATA
1 TATTATA
14976554 TATTAT
1 TATTAT
14976560 GAAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (7 bp):
TATTATA
Found at i:14977666 original size:16 final size:16
Alignment explanation
Indices: 14977644--14977712 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
14977634 TTTGGTTCGC
14977644 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
14977660 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14977676 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
14977693 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14977709 TGTA
1 TGTA
14977713 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14977690 original size:33 final size:32
Alignment explanation
Indices: 14977644--14977712 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
14977634 TTTGGTTCGC
14977644 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
14977676 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
14977709 TGTA
1 TGTA
14977713 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:14977777 original size:44 final size:45
Alignment explanation
Indices: 14977693--14977783 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
14977683 GGATTAGAGG
* * *
14977693 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
14977738 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
14977782 TG
1 TG
14977784 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:14977969 original size:18 final size:17
Alignment explanation
Indices: 14977948--14977982 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14977938 TTATTATTAA
*
14977948 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14977966 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14977983 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14978144 original size:120 final size:120
Alignment explanation
Indices: 14977931--14979869 Score: 3697
Period size: 120 Copynumber: 16.2 Consensus size: 120
14977921 ATCATATTTA
* *
14977931 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14977996 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* **
14978051 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14978116 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
14978171 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14978236 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATGAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14978291 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978356 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
**
14978411 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978476 TATTCTTATATTAATTT-CTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14978530 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978595 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14978650 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978715 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14978770 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978835 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14978890 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978955 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979010 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14979074 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979129 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14979194 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979249 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14979313 TATTCTTATATTAATTTATTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979368 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14979433 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979488 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14979553 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979608 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14979672 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979727 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14979792 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
14979847 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
14979870 AACTTGAAAA
Statistics
Matches: 1799, Mismatches: 16, Indels: 8
0.99 0.01 0.00
Matches are distributed among these distances:
119 472 0.26
120 1327 0.74
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:14978209 original size:18 final size:17
Alignment explanation
Indices: 14978188--14978222 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14978178 TTATTATTAA
*
14978188 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14978206 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14978223 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14978683 original size:359 final size:360
Alignment explanation
Indices: 14977931--14979869 Score: 3697
Period size: 359 Copynumber: 5.4 Consensus size: 360
14977921 ATCATATTTA
* *
14977931 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14977996 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
* **
14978061 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
*
14978126 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
* *
14978191 TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
*
14978256 CAAATCATAATATATGATACTGTAAAATATGAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATT
14978291 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978356 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
**
14978421 TTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14978486 TTAATTT-CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
14978550 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14978615 CAAATCATAATATATGATACTGTAAAATATAAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATT
14978650 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978715 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
14978780 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14978845 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
14978910 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14978975 CAAATCATAATATATGATACTGTAAAATATAAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATT
14979010 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14979074 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
14979139 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATGTTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14979204 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
*
14979269 TATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAATATTCTTATATTAATTTATT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14979333 CAAATCATAATATATGATACTGTAAAATATAAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATT
14979368 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14979433 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
14979498 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATGTTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14979563 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
*
14979628 TATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAATGTTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14979692 CAAATCATAATATATGATACTGTAAAATATAAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATT
14979727 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14979792 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
14979857 TTATTAAATATAT
131 TTATTAAATATAT
14979870 AACTTGAAAA
Statistics
Matches: 1562, Mismatches: 15, Indels: 5
0.99 0.01 0.00
Matches are distributed among these distances:
358 118 0.08
359 1045 0.67
360 399 0.26
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (360 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
CAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:14978829 original size:479 final size:480
Alignment explanation
Indices: 14977931--14979869 Score: 3697
Period size: 479 Copynumber: 4.0 Consensus size: 480
14977921 ATCATATTTA
* *
14977931 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
14977996 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
* **
14978061 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
*
14978126 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
* *
14978191 TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
*
14978256 CAAATCATAATATATGATACTGTAAAATATGAATTAACATAATTATTATTAAATATATTTTAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
14978321 AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
391 AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
14978386 TATATGATACTGTAAAATATAAATT
456 TATATGATACTGTAAAATATAAATT
**
14978411 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978476 TATTCTTATATTAATTT-CTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
14978540 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14978605 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
14978670 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14978735 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
14978800 AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
391 AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
14978865 TATATGATACTGTAAAATATAAATT
456 TATATGATACTGTAAAATATAAATT
14978890 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14978955 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
14979020 TTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAATATTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14979084 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
*
14979149 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATGTTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14979214 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
*
14979279 AAACTATATAATTT-AAAAAATTCTTAATAATTAATATTCTTATATTAATTTATTCAAATCATAA
391 AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
14979343 TATATGATACTGTAAAATATAAATT
456 TATATGATACTGTAAAATATAAATT
14979368 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
14979433 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
*
14979498 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATGTTCTTATA
131 TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
14979563 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
196 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
*
14979628 TATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAATGTTCTTATATTAATTTACT
261 TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
14979692 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
326 CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
*
14979757 AAACTATATAATTTAAAAAAATTCTTAATAATTAATGTTCTTATATTAATTTACTCAAATCATAA
391 AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
14979822 TATATGATACTGTAAAATATAAATT
456 TATATGATACTGTAAAATATAAATT
14979847 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
14979870 AACTTGAAAA
Statistics
Matches: 1439, Mismatches: 17, Indels: 7
0.98 0.01 0.00
Matches are distributed among these distances:
478 357 0.25
479 921 0.64
480 161 0.11
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (480 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
TTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATA
TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
TATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
CAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATT
AAACTATATAATTTAAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCATAA
TATATGATACTGTAAAATATAAATT
Found at i:14984214 original size:26 final size:26
Alignment explanation
Indices: 14984184--14984234 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14984174 CCGTAAAATA
14984184 CTGCAGCTAATACCAATGACAAAAAC
1 CTGCAGCTAATACCAATGACAAAAAC
*
14984210 CTGCAGCTAATATCAATGACAAAAA
1 CTGCAGCTAATACCAATGACAAAAA
14984235 TAAATGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.18
Consensus pattern (26 bp):
CTGCAGCTAATACCAATGACAAAAAC
Found at i:14985218 original size:23 final size:23
Alignment explanation
Indices: 14985173--14985218 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14985163 ATAAAAAATC
*
14985173 TATTTAAAAAAAAGGTCAAATTT
1 TATTTAAAAAAAAGGTAAAATTT
*
14985196 TATTTAAAATAAAGG-AAATATTT
1 TATTTAAAAAAAAGGTAAA-ATTT
14985219 CCACTTTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (23 bp):
TATTTAAAAAAAAGGTAAAATTT
Found at i:14990453 original size:16 final size:16
Alignment explanation
Indices: 14990432--14990499 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
14990422 GATTTGCTAT
14990432 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14990448 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
14990464 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
*
14990480 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
14990496 TACA
1 TACA
14990500 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14990670 original size:3 final size:3
Alignment explanation
Indices: 14990662--14990696 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14990652 ATGGTAACAC
14990662 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14990697 GATATAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14999108 original size:43 final size:43
Alignment explanation
Indices: 14999044--14999129 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
14999034 TTTGTGATTG
*
14999044 ATATTGAAATGGAAAAGATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGAAAAAGATGAGAAATGAATATGAGATGAGAAA
* *
14999087 ATATTGAAATGAAAAATATGAGAAATGATTATGAGATGAGAAA
1 ATATTGAAATGAAAAAGATGAGAAATGAATATGAGATGAGAAA
14999130 TGAGATATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.53, C:0.00, G:0.23, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGAAAAAGATGAGAAATGAATATGAGATGAGAAA
Found at i:14999111 original size:16 final size:16
Alignment explanation
Indices: 14999049--14999114 Score: 54
Period size: 16 Copynumber: 4.4 Consensus size: 16
14999039 GATTGATATT
* *
14999049 GAAATGGAAAAGATGA
1 GAAATGAAAAATATGA
14999065 GAAATG---AATATGA
1 GAAATGAAAAATATGA
*
14999078 G--ATGAGAAAATAT-T
1 GAAATGA-AAAATATGA
14999092 GAAATGAAAAATATGA
1 GAAATGAAAAATATGA
14999108 GAAATGA
1 GAAATGA
14999115 TTATGAGATG
Statistics
Matches: 40, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
11 3 0.08
13 7 0.17
14 1 0.03
15 12 0.30
16 17 0.43
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (16 bp):
GAAATGAAAAATATGA
Found at i:14999696 original size:23 final size:25
Alignment explanation
Indices: 14999646--14999699 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
14999636 TGAGGCTATG
14999646 TTGGTATGCTAGCCTAGTTTATATT
1 TTGGTATGCTAGCCTAGTTTATATT
*
14999671 TTGGTATG-T-GCTTAGTTTCATA-T
1 TTGGTATGCTAGCCTAGTTT-ATATT
14999694 TTGGTA
1 TTGGTA
14999700 ACTTTAGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 15 0.56
24 4 0.15
25 8 0.30
ACGTcount: A:0.19, C:0.09, G:0.22, T:0.50
Consensus pattern (25 bp):
TTGGTATGCTAGCCTAGTTTATATT
Found at i:15000450 original size:49 final size:49
Alignment explanation
Indices: 15000378--15000474 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 49
15000368 TCTAGAAGGG
* *
15000378 ATAAATAGTAATAAGAGTGTAGACAGTGAAAGACTAAATTTAGCAATGT
1 ATAAATAGTAATAAGAGTGTAGACAGTGAAAGACCAAATTTAGAAATGT
* * *
15000427 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAAATAGTAATAAGAGTGTAGACAGTGAAAGACCAAATTTAGAAATG
15000475 CATAGCATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.25
Consensus pattern (49 bp):
ATAAATAGTAATAAGAGTGTAGACAGTGAAAGACCAAATTTAGAAATGT
Found at i:15004233 original size:11 final size:12
Alignment explanation
Indices: 15004204--15004236 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15004194 AAATCGAGCC
15004204 ATAAATATTTTT
1 ATAAATATTTTT
*
15004216 ATCAATATTTTT
1 ATAAATATTTTT
15004228 -TAAATATTT
1 ATAAATATTT
15004237 AAGAAGTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (12 bp):
ATAAATATTTTT
Found at i:15004699 original size:18 final size:18
Alignment explanation
Indices: 15004668--15004702 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15004658 CGTACCTTCA
15004668 ATTTTGAAATTTTTAATG
1 ATTTTGAAATTTTTAATG
15004686 ATTTT-AAATGTTTTAAT
1 ATTTTGAAAT-TTTTAAT
15004703 TGATGAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (18 bp):
ATTTTGAAATTTTTAATG
Found at i:15009848 original size:25 final size:25
Alignment explanation
Indices: 15009820--15009929 Score: 100
Period size: 24 Copynumber: 4.5 Consensus size: 25
15009810 TAGCTCTTAT
*
15009820 GAGCATCCC-ATTACATGGCTCTCAC
1 GAGCTTCCCGATTA-ATGGCTCTCAC
* * *
15009845 GAGCTTCCCGA-TATTGGCTCGCAT
1 GAGCTTCCCGATTAATGGCTCTCAC
**
15009869 GAGCTTCCCGATTAATGGCTCTCTG
1 GAGCTTCCCGATTAATGGCTCTCAC
* * *
15009894 GAGCTTCCCGA-TATTGGCTCGCAT
1 GAGCTTCCCGATTAATGGCTCTCAC
*
15009918 GAGCTTCTCGAT
1 GAGCTTCCCGAT
15009930 ATTTGGCTTG
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
24 38 0.55
25 30 0.43
26 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.23, T:0.29
Consensus pattern (25 bp):
GAGCTTCCCGATTAATGGCTCTCAC
Found at i:15009872 original size:24 final size:24
Alignment explanation
Indices: 15009835--15009950 Score: 135
Period size: 24 Copynumber: 4.8 Consensus size: 24
15009825 TCCCATTACA
* *
15009835 TGGCTCTCACGAGCTTCCCGATAT
1 TGGCTCGCATGAGCTTCCCGATAT
*
15009859 TGGCTCGCATGAGCTTCCCGATTAA
1 TGGCTCGCATGAGCTTCCCGA-TAT
*
15009884 TGGCTCTC-TGGAGCTTCCCGATAT
1 TGGCTCGCAT-GAGCTTCCCGATAT
*
15009908 TGGCTCGCATGAGCTTCTCGATATT
1 TGGCTCGCATGAGCTTCCCGATA-T
* *
15009933 TGGCTTGCAAGAGCTTCC
1 TGGCTCGCATGAGCTTCC
15009951 TGTTAGATAG
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
24 41 0.53
25 37 0.47
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.31
Consensus pattern (24 bp):
TGGCTCGCATGAGCTTCCCGATAT
Found at i:15009887 original size:49 final size:50
Alignment explanation
Indices: 15009818--15009929 Score: 174
Period size: 49 Copynumber: 2.3 Consensus size: 50
15009808 TTTAGCTCTT
*
15009818 ATGAGCATCCC-ATTACATGGCTCTCACGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTTCCCGATTACATGGCTCTCACGAGCTTCCCGATATTGGCTCGC
**
15009867 ATGAGCTTCCCGATTA-ATGGCTCTCTGGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTTCCCGATTACATGGCTCTCACGAGCTTCCCGATATTGGCTCGC
*
15009916 ATGAGCTTCTCGAT
1 ATGAGCTTCCCGAT
15009930 ATTTGGCTTG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
49 54 0.93
50 4 0.07
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.29
Consensus pattern (50 bp):
ATGAGCTTCCCGATTACATGGCTCTCACGAGCTTCCCGATATTGGCTCGC
Found at i:15009947 original size:49 final size:49
Alignment explanation
Indices: 15009818--15009950 Score: 164
Period size: 49 Copynumber: 2.7 Consensus size: 49
15009808 TTTAGCTCTT
* *
15009818 ATGAGCATCCC-ATTACATGGCTCTCACGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTTCCCGATTA-ATGGCTCTCAAGAGCTTCCCGATATTGGCTCGC
**
15009867 ATGAGCTTCCCGATTAATGGCTCTCTGGAGCTTCCCGATATTGGCTCGC
1 ATGAGCTTCCCGATTAATGGCTCTCAAGAGCTTCCCGATATTGGCTCGC
* *
15009916 ATGAGCTTCTCGA-TATTTGGCT-TGCAAGAGCTTCC
1 ATGAGCTTCCCGATTA-ATGGCTCT-CAAGAGCTTCC
15009951 TGTTAGATAG
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
48 3 0.04
49 67 0.91
50 4 0.05
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.30
Consensus pattern (49 bp):
ATGAGCTTCCCGATTAATGGCTCTCAAGAGCTTCCCGATATTGGCTCGC
Found at i:15012197 original size:42 final size:42
Alignment explanation
Indices: 15012129--15012236 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
15012119 GTGCTAAACA
* * * *
15012129 GAAACCCATATGGGTTGAAC-GAAAGCTCGTAAGAGCTGAA-T
1 GAAACCCAAAAGGGTTAAACTG-AAGCTCGAAAGAGCTGAACT
15012170 GGAAACCCAAAAGGGTTAAACTGAAGCTCGAAAGAGCTGAACT
1 -GAAACCCAAAAGGGTTAAACTGAAGCTCGAAAGAGCTGAACT
* *
15012213 AAAACCCAGAAGGGTTAAACTGAA
1 GAAACCCAAAAGGGTTAAACTGAA
15012237 ACTCAAATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 56 0.97
43 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.16
Consensus pattern (42 bp):
GAAACCCAAAAGGGTTAAACTGAAGCTCGAAAGAGCTGAACT
Found at i:15012238 original size:21 final size:21
Alignment explanation
Indices: 15012171--15012238 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
15012161 GAGCTGAATG
*
15012171 GAAACCCAAAAGGGTTAAACT
1 GAAACCCAGAAGGGTTAAACT
* * * * *
15012192 GAAGCTC-GAAAGAGCTGAACT
1 GAAACCCAG-AAGGGTTAAACT
*
15012213 AAAACCCAGAAGGGTTAAACT
1 GAAACCCAGAAGGGTTAAACT
15012234 GAAAC
1 GAAAC
15012239 TCAAATGAGT
Statistics
Matches: 32, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (21 bp):
GAAACCCAGAAGGGTTAAACT
Found at i:15017876 original size:191 final size:191
Alignment explanation
Indices: 15017547--15017921 Score: 615
Period size: 191 Copynumber: 2.0 Consensus size: 191
15017537 CCACACACCC
* * * * *
15017547 ATGTGCGAGGCCGTGTGTCACACACAGTTGTGACACACGATCATGTCTCTGCCCGTGTGGACGAA
1 ATGTGCGAGGCCCTGTGTCACACACAGCTGTGACACACGACCATGTCTCTCCCCGTATGGACGAA
* *
15017612 AATAGGTCATTTTATGGCCTCTTTCCTCACCCATTCTTGACTTTAACCTACACACTACAAATTTC
66 AATAGGTCATTTTATGGCCTCTTTCCTCACCCATTCTTGACTTCAACCTACACACTACAAATTTA
*
15017677 ATGCATATAGGCCAAAACAAGATCTCTAAAACAACCAATTCCTAACTTTAATATGGTTATA
131 AAGCATATAGGCCAAAACAAGATCTCTAAAACAACCAATTCCTAACTTTAATATGGTTATA
* * *
15017738 ATGTGCGAGGCCCTGTGTCACACACGGCTGTGACACACGACCGTGTCTCTCCCCGTATGGACGAG
1 ATGTGCGAGGCCCTGTGTCACACACAGCTGTGACACACGACCATGTCTCTCCCCGTATGGACGAA
* *
15017803 AATATGTCATTTTATGGCCTCTTTCCTCACCCATTCTTGACTTCAACCTACACACTAGAAATTTA
66 AATAGGTCATTTTATGGCCTCTTTCCTCACCCATTCTTGACTTCAACCTACACACTACAAATTTA
* *
15017868 AAGCATATAGGTCAAAACAAGATCTCTAAAACAACTAATTCCTAACTTTAATAT
131 AAGCATATAGGCCAAAACAAGATCTCTAAAACAACCAATTCCTAACTTTAATAT
15017922 TGTCAAATTG
Statistics
Matches: 169, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
191 169 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (191 bp):
ATGTGCGAGGCCCTGTGTCACACACAGCTGTGACACACGACCATGTCTCTCCCCGTATGGACGAA
AATAGGTCATTTTATGGCCTCTTTCCTCACCCATTCTTGACTTCAACCTACACACTACAAATTTA
AAGCATATAGGCCAAAACAAGATCTCTAAAACAACCAATTCCTAACTTTAATATGGTTATA
Found at i:15018822 original size:35 final size:35
Alignment explanation
Indices: 15018776--15018846 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
15018766 GAATAATTAC
15018776 ATAATACCATTCATTAATCTAGCATTTAACCTTAA
1 ATAATACCATTCATTAATCTAGCATTTAACCTTAA
15018811 ATAATACCATTCATTAATCTAGCATTTAACCTTAA
1 ATAATACCATTCATTAATCTAGCATTTAACCTTAA
15018846 A
1 A
15018847 GTTTAACCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.20, G:0.03, T:0.37
Consensus pattern (35 bp):
ATAATACCATTCATTAATCTAGCATTTAACCTTAA
Found at i:15025576 original size:20 final size:19
Alignment explanation
Indices: 15025553--15025605 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
15025543 AAATAAATAA
* *
15025553 AAAATTTAAAAAAATTCGTT
1 AAAATTTAAAAAAAAT-ATT
*
15025573 AAAATATCAAAAAAAATATT
1 AAAAT-TTAAAAAAAATATT
*
15025593 AAAACTTAAAAAA
1 AAAATTTAAAAAA
15025606 TCATAAAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 7 0.26
20 11 0.41
21 9 0.33
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAATTTAAAAAAAATATT
Found at i:15025605 original size:17 final size:17
Alignment explanation
Indices: 15025582--15025628 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
15025572 TAAAATATCA
15025582 AAAAAAATATTAAAACT
1 AAAAAAATATTAAAACT
* *
15025599 TAAAAAATCATAAAAACT
1 AAAAAAAT-ATTAAAACT
*
15025617 AAAAAAAAATTA
1 AAAAAAATATTA
15025629 TTATCTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAAATATTAAAACT
Found at i:15030157 original size:24 final size:20
Alignment explanation
Indices: 15030106--15030145 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15030096 CATTTCATTT
15030106 ATGCAATTGCTTTATCCATA
1 ATGCAATTGCTTTATCCATA
15030126 ATGCAATTGCTTTATCCATA
1 ATGCAATTGCTTTATCCATA
15030146 CCATATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (20 bp):
ATGCAATTGCTTTATCCATA
Found at i:15030414 original size:41 final size:41
Alignment explanation
Indices: 15030289--15030421 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 41
15030279 ACCAGTTTGG
* *
15030289 CACCCAGTGTCTCATCAGA-TAATTCGAAGTAATAAATTGA
1 CACCCAGTGTCTCATTAGATTAATCCGAAGTAATAAATTGA
* * * * * *
15030329 CACTCAATGTCTCA-TCGGTTAAACCGAAG---TAAATTGG
1 CACCCAGTGTCTCATTAGATTAATCCGAAGTAATAAATTGA
* * *
15030366 CATCCAGTGCCTCATTAAATTAATCCGAAGTAATAAATTGA
1 CACCCAGTGTCTCATTAGATTAATCCGAAGTAATAAATTGA
15030407 CACCCAGTGTCTCAT
1 CACCCAGTGTCTCAT
15030422 CGACTTGAAG
Statistics
Matches: 69, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
37 17 0.25
38 11 0.16
39 1 0.01
40 20 0.29
41 20 0.29
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (41 bp):
CACCCAGTGTCTCATTAGATTAATCCGAAGTAATAAATTGA
Found at i:15033604 original size:31 final size:29
Alignment explanation
Indices: 15033569--15033688 Score: 99
Period size: 31 Copynumber: 4.1 Consensus size: 29
15033559 AACCCTAACA
15033569 TTTCTCTTCCTTTCTTTATT-TTTTTCTTTTC
1 TTTCT-TTCCTTTCTTT-TTGTTTTT-TTTTC
15033600 TTTCTTTCCTTCTCTGTTTTGTTTTTTTTTC
1 TTTCTTTCCTT-TCT-TTTTGTTTTTTTTTC
**
15033631 TTTCTTTCC-TTC--TTTGTTTCGTTTT-
1 TTTCTTTCCTTTCTTTTTGTTTTTTTTTC
* *
15033656 TTTCTCTCC-TTCTTTTTCTATTTCTTTTTC
1 TTTCTTTCCTTTCTTTTTGT-TTT-TTTTTC
15033686 TTT
1 TTT
15033689 TACTTTATCA
Statistics
Matches: 75, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
25 11 0.15
26 11 0.15
27 4 0.05
28 2 0.03
29 6 0.08
30 10 0.13
31 24 0.32
32 7 0.09
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.73
Consensus pattern (29 bp):
TTTCTTTCCTTTCTTTTTGTTTTTTTTTC
Found at i:15033665 original size:25 final size:26
Alignment explanation
Indices: 15033617--15033670 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
15033607 CCTTCTCTGT
** *
15033617 TTTGTTTTTTTTTCTTTCTTTCCTTC
1 TTTGTTTCGTTTTCTTTCTCTCCTTC
15033643 TTTGTTTCGTTTT-TTTCTCTCCTTC
1 TTTGTTTCGTTTTCTTTCTCTCCTTC
15033668 TTT
1 TTT
15033671 TTCTATTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.00, C:0.20, G:0.06, T:0.74
Consensus pattern (26 bp):
TTTGTTTCGTTTTCTTTCTCTCCTTC
Found at i:15033684 original size:56 final size:55
Alignment explanation
Indices: 15033573--15033688 Score: 121
Period size: 56 Copynumber: 2.1 Consensus size: 55
15033563 CTAACATTTC
* * * * *
15033573 TCTTCCTTTCTTTATTTTTTTCTTTTCTTTCTTTCCTTCTCTGTTTTGTTTTTTTT
1 TCTTTCTTTCCTTATTTGTTTCTTTTCTTTCTCTCCTTCTCTGTTTT-ATTTTTTT
*
15033629 TCTTTCTTTCCTTCTTTGTTTCGTTTT-TTTCTCTCCTTCT-T-TTTCTATTTCTTTT
1 TCTTTCTTTCCTTATTTGTTTC-TTTTCTTTCTCTCCTTCTCTGTTT-TATTT-TTTT
15033684 TCTTT
1 TCTTT
15033689 TACTTTATCA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
54 6 0.12
55 11 0.22
56 30 0.59
57 4 0.08
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.73
Consensus pattern (55 bp):
TCTTTCTTTCCTTATTTGTTTCTTTTCTTTCTCTCCTTCTCTGTTTTATTTTTTT
Found at i:15034434 original size:18 final size:18
Alignment explanation
Indices: 15034412--15034453 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
15034402 TAGTTTTAAT
*
15034412 ATTTTTATGATTTTTTTA
1 ATTTTAATGATTTTTTTA
*
15034430 CTTTTAATGATTTTTTTA
1 ATTTTAATGATTTTTTTA
15034448 ATTTTA
1 ATTTTA
15034454 TTATATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (18 bp):
ATTTTAATGATTTTTTTA
Found at i:15036307 original size:76 final size:78
Alignment explanation
Indices: 15035987--15036318 Score: 515
Period size: 78 Copynumber: 4.3 Consensus size: 78
15035977 AAAGTATATA
*
15035987 AATTGAATTAAAGGTATGAATTTTATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
1 AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
15036052 GTATAAGTTCTTG
66 GTATAAGTTCTTG
15036065 AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
1 AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
15036130 GTATAAGTTCTTG
66 GTATAAGTTCTTG
15036143 AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
1 AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
*
15036208 GTATAAGTTCCTG
66 GTATAAGTTCTTG
* * * * * * *
15036221 AATTGAATTAAAGGTATGAATTTTACATATGTATGTGTGTGATTTG-A-ATAGATGTATATACAT
1 AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
* * *
15036284 ATACAAGTACTTG
66 GTATAAGTTCTTG
* **
15036297 AGTTGAATTAAAATTATGAATT
1 AATTGAATTAAAGGTATGAATT
15036319 GTAAATACTC
Statistics
Matches: 238, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
76 43 0.18
77 1 0.00
78 194 0.82
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (78 bp):
AATTGAATTAAAGGTATGAATTATATATATGTATATGTGAGGTTCGAATATATATGTATATACAT
GTATAAGTTCTTG
Found at i:15036541 original size:40 final size:41
Alignment explanation
Indices: 15036474--15036564 Score: 157
Period size: 40 Copynumber: 2.2 Consensus size: 41
15036464 TGCCTAGTAT
* *
15036474 GCTTAATGCCGGTGAAATTTTTTAGACTTAATGTCTAGCAG
1 GCTTAATGCCGATGAAATTTTTCAGACTTAATGTCTAGCAG
15036515 GCTTAATGCCGATG-AATTTTTCAGACTTAATGTCTAGCAG
1 GCTTAATGCCGATGAAATTTTTCAGACTTAATGTCTAGCAG
15036555 GCTTAATGCC
1 GCTTAATGCC
15036565 AGTGTTCTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 35 0.73
41 13 0.27
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (41 bp):
GCTTAATGCCGATGAAATTTTTCAGACTTAATGTCTAGCAG
Found at i:15036753 original size:35 final size:35
Alignment explanation
Indices: 15036714--15036820 Score: 102
Period size: 35 Copynumber: 3.2 Consensus size: 35
15036704 TATTTGATAA
15036714 GTATATATATGCATTCGGTTATATACCTTTGAAGT
1 GTATATATATGCATTCGGTTATATACCTTTGAAGT
* *
15036749 G----TATATGCTTTCGATTATAAGTA--TTTGATAG-
1 GTATATATATGCATTCGGTTAT-A-TACCTTTGA-AGT
* *
15036780 GTATATATATGCATTTGGTTATATACCTTTGATGT
1 GTATATATATGCATTCGGTTATATACCTTTGAAGT
15036815 GTATAT
1 GTATAT
15036821 GCAGTCGATT
Statistics
Matches: 56, Mismatches: 6, Indels: 20
0.68 0.07 0.24
Matches are distributed among these distances:
31 21 0.38
32 3 0.05
33 4 0.07
34 2 0.04
35 26 0.46
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (35 bp):
GTATATATATGCATTCGGTTATATACCTTTGAAGT
Found at i:15036767 original size:31 final size:31
Alignment explanation
Indices: 15036719--15036963 Score: 124
Period size: 31 Copynumber: 7.6 Consensus size: 31
15036709 GATAAGTATA
*
15036719 TATATGCATTCGGTTATATACCTTTGAAGTG
1 TATATGCATTCGATTATATACCTTTGAAGTG
* *
15036750 TATATGCTTTCGATTATAAGTA--TTTGATAGGTATA
1 TATATGCATTCGATTAT-A-TACCTTTGA-A-G--TG
* * *
15036785 TATATGCATTTGGTTATATACCTTTGATGTG
1 TATATGCATTCGATTATATACCTTTGAAGTG
* *
15036816 TATATGCAGTCGATTATAAGTA--TTTGATAGGTA
1 TATATGCATTCGATTAT-A-TACCTTTGA-A-GTG
* * * * *
15036849 TATATGCATTCGGTTGTATGCATTTGATGTG
1 TATATGCATTCGATTATATACCTTTGAAGTG
* *
15036880 TATATGCATTTGATTATAAGTA--TTTGATAGGTA
1 TATATGCATTCGATTAT-A-TACCTTTGA-A-GTG
* * * *
15036913 TATATTTGCATTCGGTTGTATACATTTGATGTG
1 TATA--TGCATTCGATTATATACCTTTGAAGTG
*
15036946 TATATGCATTCGGTTATA
1 TATATGCATTCGATTATA
15036964 AGTAGTTGAT
Statistics
Matches: 161, Mismatches: 31, Indels: 44
0.68 0.13 0.19
Matches are distributed among these distances:
31 75 0.47
32 5 0.03
33 44 0.27
34 2 0.01
35 35 0.22
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (31 bp):
TATATGCATTCGATTATATACCTTTGAAGTG
Found at i:15036810 original size:66 final size:66
Alignment explanation
Indices: 15036704--15037014 Score: 425
Period size: 66 Copynumber: 4.8 Consensus size: 66
15036694 ATTTATATCT
* * * *
15036704 TATTTGATAAGTATATATATGCATTCGGTTATATACCTTTGAAGTGTATATGCTTTCGATTATAA
1 TATTTGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
15036769 G
66 G
* * *
15036770 TATTTGATAGGTATATATATGCATTTGGTTATATACCTTTGATGTGTATATGCAGTCGATTATAA
1 TATTTGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
15036835 G
66 G
* * *
15036836 TATTTGATAGG--TATATATGCATTCGGTTGTATGCATTTGATGTGTATATGCATTTGATTATAA
1 TATTTGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
15036899 G
66 G
* * *
15036900 TATTTGATAGGTATATATTTGCATTCGGTTGTATACATTTGATGTGTATATGCATTCGGTTATAA
1 TATTTGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
15036965 G
66 G
* * * *
15036966 TAGTTGATAAG--TATATATGCATTCGGTTATA-AGTATTTGATGAGTATAT
1 TATTTGATAGGTATATATATGCATTCGGTTATATA-CATTTGATGTGTATAT
15037015 ACATACATTT
Statistics
Matches: 221, Mismatches: 21, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
63 1 0.00
64 90 0.41
66 130 0.59
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (66 bp):
TATTTGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCATTCGATTATAA
G
Found at i:15036858 original size:130 final size:130
Alignment explanation
Indices: 15036707--15036996 Score: 438
Period size: 130 Copynumber: 2.2 Consensus size: 130
15036697 TATATCTTAT
*
15036707 TTGATAAGTATATATATGCATTCGGTTATATACCTTTGAAGTGTATATGC-TTTCGATTATAAGT
1 TTGATAAG--TATATATGCATTCGGTTATATACATTTGAAGTGTATATGCATTT-GATTATAAGT
* *
15036771 ATTTGATAGGTATATATATGCATTTGGTTATATACCTTTGATGTGTATATGCAGTCGATTATAAG
63 ATTTGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCAGTCGATTATAAG
*
15036836 TAT
128 TAG
* * * *
15036839 TTGATAGGTATATATGCATTCGGTTGTATGCATTTGATGTGTATATGCATTTGATTATAAGTATT
1 TTGATAAGTATATATGCATTCGGTTATATACATTTGAAGTGTATATGCATTTGATTATAAGTATT
* * * *
15036904 TGATAGGTATATATTTGCATTCGGTTGTATACATTTGATGTGTATATGCATTCGGTTATAAGTAG
66 TGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCAGTCGATTATAAGTAG
15036969 TTGATAAGTATATATGCATTCGGTTATA
1 TTGATAAGTATATATGCATTCGGTTATA
15036997 AGTATTTGAT
Statistics
Matches: 143, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
130 133 0.93
131 3 0.02
132 7 0.05
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (130 bp):
TTGATAAGTATATATGCATTCGGTTATATACATTTGAAGTGTATATGCATTTGATTATAAGTATT
TGATAGGTATATATATGCATTCGGTTATATACATTTGATGTGTATATGCAGTCGATTATAAGTAG
Found at i:15040083 original size:27 final size:27
Alignment explanation
Indices: 15040013--15040083 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
15040003 TGCCATATCA
* *
15040013 ATAGGCGACACTAGTGACCCTTACTTG
1 ATAGGCGGCACTAGTGACCCCTACTTG
*
15040040 ATAGGCGGTACTAGTGACCCCTATCTT-
1 ATAGGCGGCACTAGTGACCCCTA-CTTG
* *
15040067 ATAGGTGGCACTGGTGA
1 ATAGGCGGCACTAGTGA
15040084 AGTAAATTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
27 34 0.92
28 3 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (27 bp):
ATAGGCGGCACTAGTGACCCCTACTTG
Found at i:15044217 original size:21 final size:21
Alignment explanation
Indices: 15044188--15044229 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15044178 GCATGCGAAT
* *
15044188 TAAAAGAAAAAGAATAAAGAA
1 TAAAAGAAAAAAAAGAAAGAA
*
15044209 TAAAGGAAAAAAAAGAAAGAA
1 TAAAAGAAAAAAAAGAAAGAA
15044230 AGAACAGAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (21 bp):
TAAAAGAAAAAAAAGAAAGAA
Found at i:15050265 original size:35 final size:35
Alignment explanation
Indices: 15050219--15050288 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
15050209 CACTCTCCTG
15050219 ACTTTTATTTTAGGAAGGAGATAATTTTTTTTTAC
1 ACTTTTATTTTAGGAAGGAGATAATTTTTTTTTAC
15050254 ACTTTTATTTTAGGAAGGAGATAATTTTTTTTTAC
1 ACTTTTATTTTAGGAAGGAGATAATTTTTTTTTAC
15050289 TTATTTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (35 bp):
ACTTTTATTTTAGGAAGGAGATAATTTTTTTTTAC
Found at i:15050700 original size:18 final size:19
Alignment explanation
Indices: 15050677--15050712 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
15050667 AATTGAAGGA
*
15050677 TAAATTTAATTAA-AAAAT
1 TAAATTAAATTAATAAAAT
15050695 TAAATTAAATTAATAAAA
1 TAAATTAAATTAATAAAA
15050713 GATATAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAATTAAATTAATAAAAT
Found at i:15068833 original size:11 final size:11
Alignment explanation
Indices: 15068798--15068839 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
15068788 AAATCCTTTA
15068798 TCTC-AATTTC
1 TCTCAAATTTC
*
15068808 TCTCTAATATTC
1 TCTCAAAT-TTC
15068820 TCTCAAATTTC
1 TCTCAAATTTC
15068831 TCTCAAATT
1 TCTCAAATT
15068840 CCTATTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 4 0.14
11 15 0.52
12 10 0.34
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (11 bp):
TCTCAAATTTC
Found at i:15070696 original size:18 final size:18
Alignment explanation
Indices: 15070673--15070715 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
15070663 TGCCAAGTGC
*
15070673 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTTTAT
15070691 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTTTAT
*
15070709 GTTTCCT
1 GTATCCT
15070716 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTTTAT
Found at i:15074531 original size:125 final size:125
Alignment explanation
Indices: 15074305--15074716 Score: 689
Period size: 125 Copynumber: 3.3 Consensus size: 125
15074295 ACCAAACATG
* *
15074305 CTACTGTAGCAAAAGCGCGTCCACGTTGGAGCGATTTCAAAAATTCTTTTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAAAAATTCTTTTGATAAAGCATCCTGC
*
15074370 TTGAAACGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * *
15074430 CTATTGTAGCAAAAGCGCATCCACGTGGGAGCGATTTTAAAAATTCTTCTGATAAAGCATCCTAC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAAAAATTCTTTTGATAAAGCATCCTGC
*
15074495 TTGATGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* *
15074555 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAGAAATTATTTTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAAAAATTCTTTTGATAAAGCATCCTGC
* *
15074620 TTGAAGCGTTTTTTATTCTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * *
15074680 CTACTGTATCAAAAACGCGTCCAAGTGGGAGCGATTT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTT
15074717 CCTTAATAAA
Statistics
Matches: 267, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
125 267 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTTAAAAATTCTTTTGATAAAGCATCCTGC
TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:15078161 original size:3 final size:3
Alignment explanation
Indices: 15078153--15078189 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
15078143 TTGGGTTAGG
* *
15078153 GAA GAA GAA GAA GAG GAG GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
15078190 GGGGAAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15080242 original size:23 final size:23
Alignment explanation
Indices: 15080210--15080260 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
15080200 ATTGTTCCAA
15080210 CTTTG-GATAATAAGCTTATAGG
1 CTTTGTGATAATAAGCTTATAGG
15080232 CTTTGTGATAATAAGCTTATAGG
1 CTTTGTGATAATAAGCTTATAGG
15080255 CTTTGT
1 CTTTGT
15080261 TTTCATTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.18
23 23 0.82
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
CTTTGTGATAATAAGCTTATAGG
Found at i:15081435 original size:43 final size:43
Alignment explanation
Indices: 15081374--15081512 Score: 161
Period size: 43 Copynumber: 3.2 Consensus size: 43
15081364 GTTTACAACA
15081374 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGTAT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGTAT
* * * ** * * *
15081417 AAAAACACCGTTAGAGATCATAATATTTAGCGGCGCTTTTTTT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGTAT
* * * *
15081460 ACAAACGCCGCTACAGAACATGTTCTTTAGCGGCGCTTTTGTAC
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TTTGTAT
15081504 AAAAACGCC
1 AAAAACGCC
15081513 ACTATTTTTG
Statistics
Matches: 75, Mismatches: 20, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
43 63 0.84
44 12 0.16
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGTAT
Found at i:15081906 original size:21 final size:21
Alignment explanation
Indices: 15081882--15081930 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
15081872 CTTTTGAACC
* *
15081882 TCTGCTTCTCTCGCTGCAGCT
1 TCTGCTTCCCTCGCTGCAGCG
*
15081903 TCTGCTTCCCTCGCTGCCGCG
1 TCTGCTTCCCTCGCTGCAGCG
15081924 TCTGCTT
1 TCTGCTT
15081931 TAAGTTGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.41, G:0.20, T:0.37
Consensus pattern (21 bp):
TCTGCTTCCCTCGCTGCAGCG
Done.