Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 51 of 228
Found at i:15408891 original size:44 final size:45
Alignment explanation
Indices: 15408823--15408909 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 45
15408813 TTTTATTACA
*
15408823 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
* *
15408868 TCAAA-AAATTTCTATTTTTTTACATAAAATAATATCAAAATA
1 TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATA
15408910 TTCAAAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 34 0.87
45 5 0.13
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
Found at i:15410189 original size:22 final size:22
Alignment explanation
Indices: 15410164--15410237 Score: 98
Period size: 22 Copynumber: 3.4 Consensus size: 22
15410154 AAATATGGAT
*
15410164 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGAAAGGAAA
15410186 TTGAGAGAATTTTGAAAGGAAA
1 TTGAGAGAATTTTGAAAGGAAA
*
15410208 TTGAGAAGAA--TTGAGAGGAAA
1 TTGAG-AGAATTTTGAAAGGAAA
15410229 TATGAGAGA
1 T-TGAGAGA
15410238 GGATTTGTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.29
22 30 0.62
23 4 0.08
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (22 bp):
TTGAGAGAATTTTGAAAGGAAA
Found at i:15417263 original size:15 final size:15
Alignment explanation
Indices: 15417243--15417273 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15417233 AGCTTGAAGT
15417243 GAAGATCAAGATAAA
1 GAAGATCAAGATAAA
*
15417258 GAAGATGAAGATAAA
1 GAAGATCAAGATAAA
15417273 G
1 G
15417274 TAGTGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.26, T:0.13
Consensus pattern (15 bp):
GAAGATCAAGATAAA
Found at i:15418628 original size:28 final size:28
Alignment explanation
Indices: 15418587--15418675 Score: 115
Period size: 28 Copynumber: 3.2 Consensus size: 28
15418577 TTGCACTGAG
**
15418587 GCAAAGCTTAACAGAGAGCTCACACAAA
1 GCAAAGCCAAACAGAGAGCTCACACAAA
* * **
15418615 GCAGAGCCAAACAGAGAGTTCGTACAAA
1 GCAAAGCCAAACAGAGAGCTCACACAAA
*
15418643 GCAAAGCCAAAAAGAGAGCTCACACAAA
1 GCAAAGCCAAACAGAGAGCTCACACAAA
15418671 GCAAA
1 GCAAA
15418676 CTTAGCAGAA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.48, C:0.24, G:0.20, T:0.08
Consensus pattern (28 bp):
GCAAAGCCAAACAGAGAGCTCACACAAA
Found at i:15422199 original size:16 final size:15
Alignment explanation
Indices: 15422178--15422220 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
15422168 AATTTCTAAC
15422178 CCTAAACCTTAAAAA
1 CCTAAACCTTAAAAA
*
15422193 CCATAAACATTTAAAAA
1 CC-TAAAC-CTTAAAAA
15422210 CTCTAAACCTT
1 C-CTAAACCTT
15422221 TTAAAAAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
15 2 0.09
16 7 0.30
17 13 0.57
18 1 0.04
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (15 bp):
CCTAAACCTTAAAAA
Found at i:15422216 original size:17 final size:18
Alignment explanation
Indices: 15422186--15422227 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
15422176 ACCCTAAACC
15422186 TTAAAAACCATAAA-CAT
1 TTAAAAACCATAAACCAT
*
15422203 TTAAAAACTC-TAAACCTT
1 TTAAAAAC-CATAAACCAT
15422221 TTAAAAA
1 TTAAAAA
15422228 GGGTCGAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.29
Consensus pattern (18 bp):
TTAAAAACCATAAACCAT
Found at i:15424793 original size:33 final size:33
Alignment explanation
Indices: 15424756--15424870 Score: 103
Period size: 33 Copynumber: 3.5 Consensus size: 33
15424746 AGATTAATTT
15424756 ATATTTTATGTATCATTATATTAAATTATTTAA
1 ATATTTTATGTATCATTATATTAAATTATTTAA
* * * * *
15424789 ATATTTCATATCTCAATACATTAAATTATTTAA
1 ATATTTTATGTATCATTATATTAAATTATTTAA
* * *
15424822 ATATATTTAT-TATTA-TAT-TTAAGTT-TTCAAA
1 ATAT-TTTATGTATCATTATATTAAATTATT-TAA
*
15424853 ATATTTTATGTATTATTA
1 ATATTTTATGTATCATTA
15424871 ATTTTACAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
30 7 0.10
31 17 0.25
32 4 0.06
33 35 0.52
34 4 0.06
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (33 bp):
ATATTTTATGTATCATTATATTAAATTATTTAA
Found at i:15425759 original size:16 final size:17
Alignment explanation
Indices: 15425740--15425776 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
15425730 ATGACACATA
15425740 AAAAAATTGA-CCCACC
1 AAAAAATTGACCCCACC
*
15425756 AAAAATTTGACCCCACC
1 AAAAAATTGACCCCACC
15425773 AAAA
1 AAAA
15425777 TTTTTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.51, C:0.30, G:0.05, T:0.14
Consensus pattern (17 bp):
AAAAAATTGACCCCACC
Found at i:15427919 original size:27 final size:27
Alignment explanation
Indices: 15427859--15427918 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 27
15427849 ATAAAAAATA
15427859 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
15427886 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
15427912 ACCAAAA
1 ACCAAAA
15427919 AATACAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 18 0.55
27 15 0.45
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.47
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:15428364 original size:19 final size:19
Alignment explanation
Indices: 15428340--15428405 Score: 91
Period size: 19 Copynumber: 3.5 Consensus size: 19
15428330 ATTAAAATAG
15428340 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
15428359 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
15428377 TCTT-ATTTAATAACTCTAT
1 T-TTAATTTAATAACTCTAT
15428396 TTTAATTTAA
1 TTTAATTTAA
15428406 AAAAATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 15 0.38
19 25 0.62
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:15428669 original size:18 final size:19
Alignment explanation
Indices: 15428630--15428688 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
15428620 ATTTTATATT
15428630 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
15428649 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
15428667 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
15428686 TTA
1 TTA
15428689 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:15437998 original size:50 final size:50
Alignment explanation
Indices: 15437936--15438312 Score: 228
Period size: 50 Copynumber: 7.6 Consensus size: 50
15437926 TTGAAAAGTA
* *
15437936 AAAAGATTGAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAGCGG
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGG
* * * * * *** * * * *
15437986 AACAGATTGAAGCTACGACGGCAGCTCTGGTTTCCCT-GATATTGCAAGT-A
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGC-AGTGG
*
15438036 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGG
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGG
* * * * *** * * * * **
15438086 AACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCT-GATATTGCAATTA
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGCAGTGG
* * *
15438136 AAAAGATTGAAGCCACAATGGCGGATCTTACTTCCTTAGCAGCGCAATGG
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGG
* * * * * * * * * *
15438186 AATAGATTGAAACTACGACGGTGGATC-TAGTTTTCC-TAACATTGCAAT-T
1 AAAAGATTGAAGCCACAACGGCGGATCTTA--CTTCCTTAGCAGTGCAGTGG
* *
15438235 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTT-GACGGTGCGGTGG
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGCAGTGG
* * * *
15438285 AACAGATTGAAGCTACGACGACGGATCT
1 AAAAGATTGAAGCCACAACGGCGGATCT
15438313 AGTTTCCCCA
Statistics
Matches: 235, Mismatches: 80, Indels: 24
0.69 0.24 0.07
Matches are distributed among these distances:
48 4 0.02
49 34 0.14
50 189 0.80
51 8 0.03
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (50 bp):
AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGG
Found at i:15438063 original size:100 final size:100
Alignment explanation
Indices: 15437931--15438320 Score: 559
Period size: 100 Copynumber: 3.9 Consensus size: 100
15437921 GCGGGTTGAA
*
15437931 AAGTAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGA
1 AAGTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGA
*
15437996 AGCTACGACGGCAGCTCTGGTTTCCCTGATATTGC
66 AGCTACGACGGCAGATCTGGTTTCCCTGATATTGC
15438031 AAGTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGA
1 AAGTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGA
15438096 AGCTACGACGGCAGATCTGGTTTCCCTGATATTGC
66 AGCTACGACGGCAGATCTGGTTTCCCTGATATTGC
* * * ** *
15438131 AATTAAAAAGATTGAAGCCACAATGGCGGATCTTACTTCCTTAGCAGCGCAATGGAATAGATTGA
1 AAGTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGA
* ** * * * *
15438196 AACTACGACGGTGGATCTAGTTTTCCTAACATTGC
66 AGCTACGACGGCAGATCTGGTTTCCCTGATATTGC
* * * *
15438231 AA-TTAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTT-GACGGTGCGGTGGAACAGATTG
1 AAGTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGCAGCGGAACAGATTG
* * *
15438294 AAGCTACGACGACGGATCTAGTTTCCC
65 AAGCTACGACGGCAGATCTGGTTTCCC
15438321 CAACACAACA
Statistics
Matches: 263, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
98 1 0.00
99 75 0.29
100 187 0.71
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (100 bp):
AAGTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGA
AGCTACGACGGCAGATCTGGTTTCCCTGATATTGC
Found at i:15438391 original size:44 final size:44
Alignment explanation
Indices: 15438330--15438773 Score: 315
Period size: 44 Copynumber: 9.9 Consensus size: 44
15438320 CCAACACAAC
*
15438330 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
* * ** * * * *
15438374 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTAAGGCTGC
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAA-GCAGT
* * *
15438419 AGTGGAGTATATTGAAGCCAGTAAC---TC-TATCTCCCTAGGCAGT
1 AGTGGAGTAGATTAAAG--A-TAACAGATCTTATCTCCCTAAGCAGT
*
15438462 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
* ** * * *
15438506 AGTGGAGTAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTT
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCT-A---AGCAG-T
*
15438555 AGCAATGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
1 AG---TGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
* * ** * * * ** *
15438602 AGTGGAGAAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGC
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCT-AAGCAGT
* * ** ** ** *
15438647 AGTGGAGTATATTGAAGCCAGTA-AT-TCTATCTCCCTGGGCAGC
1 AGTGGAGTAGATTAAAGATAACAGATCT-TATCTCCCTAAGCAGT
*
15438690 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
* * ** *
15438734 AGTGGAGCAGATCAAAGATGGCAGATTTTATCTCCCTAAG
1 AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAAG
15438774 GTTGCAGTGG
Statistics
Matches: 303, Mismatches: 77, Indels: 40
0.72 0.18 0.10
Matches are distributed among these distances:
40 4 0.01
41 1 0.00
43 40 0.13
44 174 0.57
45 37 0.12
47 4 0.01
48 10 0.03
49 3 0.01
51 1 0.00
52 29 0.10
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (44 bp):
AGTGGAGTAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGT
Found at i:15438576 original size:52 final size:49
Alignment explanation
Indices: 15438501--15438649 Score: 150
Period size: 52 Copynumber: 3.1 Consensus size: 49
15438491 ATCTCCCTAA
*
15438501 GCAG-TAGTGGAGTAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
1 GCAGTTAGTGGAATAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
* ** * * *
15438549 GCAGTTAGCAATGGAATAGATTAAAGATAACAGATCTTATCTCCCT-A---A
1 GCAGTTAG---TGGAATAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
15438597 GCAG-TAGTGGAGA-AGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
1 GCAGTTAGTGGA-ATAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
15438645 GCAGT
1 GCAGT
15438650 GGAGTATATT
Statistics
Matches: 78, Mismatches: 13, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
44 28 0.36
45 2 0.03
47 3 0.04
48 12 0.15
49 3 0.04
51 1 0.01
52 29 0.37
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (49 bp):
GCAGTTAGTGGAATAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTT
Found at i:15438628 original size:96 final size:96
Alignment explanation
Indices: 15438464--15438649 Score: 363
Period size: 96 Copynumber: 1.9 Consensus size: 96
15438454 TAGGCAGTAG
*
15438464 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGATGGCA
1 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
15438529 GATTTTACCTCCCTGAGGTTGCAGTTAGCAA
66 GATTTTACCTCCCTGAGGTTGCAGTTAGCAA
15438560 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
1 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
15438625 GATTTTACCTCCCTGAGGTTGCAGT
66 GATTTTACCTCCCTGAGGTTGCAGT
15438650 GGAGTATATT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (96 bp):
TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
GATTTTACCTCCCTGAGGTTGCAGTTAGCAA
Found at i:15438729 original size:228 final size:228
Alignment explanation
Indices: 15438332--15438781 Score: 819
Period size: 228 Copynumber: 2.0 Consensus size: 228
15438322 AACACAACAG
*
15438332 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCA
1 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
*
15438397 GATTTTACCTCCCTAAGGCTGCAGTGGAGTATATTGAAGCCAGTAACTCTATCTCCCTAGGCAGT
66 GATTTTACCTCCCTAAGGCTGCAGTGGAGTATATTGAAGCCAGTAACTCTATCTCCCTAGGCAGC
*
15438462 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGATGG
131 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
*
15438527 CAGATTTTACCTCCCTGAGGTTGCAGTTAGCAA
196 CAGATTTTACCTCCCTAAGGTTGCAGTTAGCAA
15438560 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
1 TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
* * * *
15438625 GATTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTGGGCAGC
66 GATTTTACCTCCCTAAGGCTGCAGTGGAGTATATTGAAGCCAGTAACTCTATCTCCCTAGGCAGC
15438690 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
131 AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
*
15438755 CAGATTTTATCTCCCTAAGGTTGCAGT
196 CAGATTTTACCTCCCTAAGGTTGCAGT
15438782 GGAGTATATT
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
228 213 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (228 bp):
TGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCA
GATTTTACCTCCCTAAGGCTGCAGTGGAGTATATTGAAGCCAGTAACTCTATCTCCCTAGGCAGC
AGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
CAGATTTTACCTCCCTAAGGTTGCAGTTAGCAA
Found at i:15438735 original size:132 final size:132
Alignment explanation
Indices: 15438555--15438813 Score: 464
Period size: 132 Copynumber: 2.0 Consensus size: 132
15438545 GGTTGCAGTT
15438555 AGCAATGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGA
1 AGCAATGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGA
* * *
15438620 TGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTGG
66 TGGCAGATTTTACCTCCCTAAGGTTGCAGTGGAGTATATTGAAGCCAATAATTCTACCTCCCTGG
15438685 GC
131 GC
* *
15438687 AGCAGTGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
1 AGCAATGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGA
*
15438752 TGGCAGATTTTATCTCCCTAAGGTTGCAGTGGAGTATATTGAAGCCAATAATTCTACCTCCC
66 TGGCAGATTTTACCTCCCTAAGGTTGCAGTGGAGTATATTGAAGCCAATAATTCTACCTCCC
15438814 CGGTTGGCAG
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 121 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (132 bp):
AGCAATGGAATAGATTAAAGATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATCAAAGA
TGGCAGATTTTACCTCCCTAAGGTTGCAGTGGAGTATATTGAAGCCAATAATTCTACCTCCCTGG
GC
Found at i:15442114 original size:27 final size:27
Alignment explanation
Indices: 15442029--15442105 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
15442019 TTTTAGTCCT
* *
15442029 TTGGCGCCATTGGTGCTGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCACA
15442056 TTGGCACCATTGGTGCCGCCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCACA
* *
15442083 TTGGCACCTTTGGTGTCGCCAAT
1 TTGGCACCATTGGTGCCGCCAAT
15442106 GTAATTGGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.18, C:0.30, G:0.25, T:0.27
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCACA
Found at i:15442193 original size:28 final size:28
Alignment explanation
Indices: 15442162--15442227 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
15442152 TTTTTTTGGT
*
15442162 ATATTTTGGTAAATAAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
15442190 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
15442218 ATATTTTGGT
1 ATATTTTGGT
15442228 TATTTTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:15442650 original size:19 final size:20
Alignment explanation
Indices: 15442616--15442655 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
15442606 AATAATTTGA
15442616 TTTAGTTTTATTTTAAATTT
1 TTTAGTTTTATTTTAAATTT
15442636 TTTAGTTTT-TTTTAAATTT
1 TTTAGTTTTATTTTAAATTT
15442655 T
1 T
15442656 AAATTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTAGTTTTATTTTAAATTT
Found at i:15442666 original size:19 final size:20
Alignment explanation
Indices: 15442622--15442666 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
15442612 TTGATTTAGT
* *
15442622 TTTA-TTTTAAATTTTTTAG
1 TTTATTTTTAAATTTTTAAA
15442641 TTT-TTTTTAAA-TTTTAAA
1 TTTATTTTTAAATTTTTAAA
15442659 TTTATTTT
1 TTTATTTT
15442667 GACCAAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTATTTTTAAATTTTTAAA
Found at i:15449107 original size:38 final size:38
Alignment explanation
Indices: 15449022--15449109 Score: 158
Period size: 38 Copynumber: 2.3 Consensus size: 38
15449012 CTAATAAATC
**
15449022 AAATACATGACAAACATGTCTACTGCTACTATTGATCT
1 AAATACATGTTAAACATGTCTACTGCTACTATTGATCT
15449060 AAATACATGTTAAACATGTCTACTGCTACTATTGATCT
1 AAATACATGTTAAACATGTCTACTGCTACTATTGATCT
15449098 AAATACATGTTA
1 AAATACATGTTA
15449110 CTATTGATCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (38 bp):
AAATACATGTTAAACATGTCTACTGCTACTATTGATCT
Found at i:15449114 original size:22 final size:22
Alignment explanation
Indices: 15449086--15449127 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
15449076 TGTCTACTGC
15449086 TACTATTGATCTAAATACATGT
1 TACTATTGATCTAAATACATGT
15449108 TACTATTGATCTAAATACAT
1 TACTATTGATCTAAATACAT
15449128 ATTAAACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (22 bp):
TACTATTGATCTAAATACATGT
Found at i:15451573 original size:39 final size:39
Alignment explanation
Indices: 15451491--15451590 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
15451481 GAAATCCTTG
*
15451491 TTATAATTATTGTAATTATAA-TTTACGATCAAATATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAAAATTA
* * *
15451529 TTATAATTATTGTAATTGTAATTTTTCGGTCAAAAATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAAAATTA
* *
15451568 TTATAACTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
15451591 ATTATATTCG
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 20 0.37
39 34 0.63
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (39 bp):
TTATAATTATTGTAATTATAATTTTACGATCAAAAATTA
Found at i:15456354 original size:16 final size:15
Alignment explanation
Indices: 15456327--15456356 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
15456317 AAATTCACAT
15456327 TTATACTATATATAA
1 TTATACTATATATAA
15456342 TTATACATATATATA
1 TTATAC-TATATATA
15456357 TTTTCAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATACTATATATAA
Found at i:15467810 original size:26 final size:26
Alignment explanation
Indices: 15467755--15467810 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
15467745 GAATTTTCTC
*
15467755 AAAATTTTATCGAGGATAAAATCGTT
1 AAAATTTTATCGAGGATAAAATCGTA
* *
15467781 AAAATTTTATC-AGGGGTAAAATTGTA
1 AAAATTTTATCGA-GGATAAAATCGTA
15467807 AAAA
1 AAAA
15467811 AAAATTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (26 bp):
AAAATTTTATCGAGGATAAAATCGTA
Found at i:15482896 original size:12 final size:12
Alignment explanation
Indices: 15482879--15482904 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15482869 TAATACATTA
15482879 ACTTACATAACT
1 ACTTACATAACT
15482891 ACTTACATAACT
1 ACTTACATAACT
15482903 AC
1 AC
15482905 CATTGCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.31
Consensus pattern (12 bp):
ACTTACATAACT
Found at i:15488677 original size:41 final size:42
Alignment explanation
Indices: 15488624--15488913 Score: 195
Period size: 42 Copynumber: 6.9 Consensus size: 42
15488614 GTTTTTGTAT
* * *
15488624 AAAAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTG-TA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
* *
15488665 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAAA
* * ****
15488708 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCC
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
** * * ****
15488750 TTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTC
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
** * * * * * ****
15488792 CTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
* * ****
15488834 ACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
** * * *
15488876 CTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTT
15488914 TTTCTAAGCG
Statistics
Matches: 213, Mismatches: 34, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
41 32 0.15
42 148 0.69
43 33 0.15
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (42 bp):
AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
Found at i:15488777 original size:42 final size:41
Alignment explanation
Indices: 15488713--15488955 Score: 285
Period size: 42 Copynumber: 5.8 Consensus size: 41
15488703 AGAAAAAAAA
15488713 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-CCTTAAG
*
15488755 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCC-TAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCG--TTTTCCTTAAG
* * * * *
15488797 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTT-TTTACAAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTT--AAG
* **
15488839 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCT-TAAG
*
15488881 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-TTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCT-TAAG
* * *
15488922 CGCCGCTAAAGAACATGGTCTTTAACGGTGTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT
15488956 TGTTTGTAAA
Statistics
Matches: 180, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
40 5 0.03
41 38 0.21
42 128 0.71
43 4 0.02
44 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (41 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTTAAG
Found at i:15488801 original size:84 final size:82
Alignment explanation
Indices: 15488626--15488956 Score: 356
Period size: 84 Copynumber: 4.0 Consensus size: 82
15488616 TTTTGTATAA
* * * *** ** *
15488626 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTGTAAAAAATGCCACTAAAGAACATGTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TCTTAAGCGCCGCTAAAGAACATGTTCT
*******
15488691 TTAGCGGCGATTAGAAAAA
65 TTAGCGGCG-TTTTTTCCT
*
15488710 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCCTTAAGCGCCGCTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT--CTTAAGCGCCGCTAAAGAACATGTTC
15488775 TTTAGCGGCGTTTTTTCCT
64 TTTAGCGGCGTTTTTTCCT
* * * * *
15488794 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTACAAACGCCGCTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTT--AAGCGCCGCTAAAGAACATGTTC
*
15488859 TTTAGCGGCGTTTTTTTCT
64 TTTAGCGGCGTTTTTTCCT
* *
15488878 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCT-TAAGCGCCGCTAAAGAACATGTTCT
* *
15488943 TTAACGGTGTTTTT
65 TTAGCGGCGTTTTT
15488957 GTTTGTAAAC
Statistics
Matches: 211, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
82 2 0.01
83 35 0.17
84 143 0.68
85 31 0.15
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (82 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTAAGCGCCGCTAAAGAACATGTTCTT
TAGCGGCGTTTTTTCCT
Found at i:15488851 original size:126 final size:125
Alignment explanation
Indices: 15488710--15488945 Score: 411
Period size: 126 Copynumber: 1.9 Consensus size: 125
15488700 ATTAGAAAAA
*
15488710 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCC-CTTAAGCGCCGCTAAAGAACATGTT
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTC-TAAGCGCCGCTAAAGAACATGAT
15488774 CTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC
65 CTTTAGCGGCGTTTTTT-CTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC
* **
15488836 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTCTAAGCGCCGCTAAAGAACATGATC
15488901 TTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
66 TTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
15488946 ACGGTGTTTT
Statistics
Matches: 105, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
125 29 0.28
126 75 0.71
127 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (125 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTCTAAGCGCCGCTAAAGAACATGATC
TTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC
Found at i:15490233 original size:87 final size:87
Alignment explanation
Indices: 15490080--15490280 Score: 249
Period size: 87 Copynumber: 2.3 Consensus size: 87
15490070 ACTGATTTTG
** * * * *
15490080 ATCTGATCTGGCAGTTTAACTGTAACTTATCGGTACAACGGTTTACCACACTGTACCGCATGTAC
1 ATCTGATCTGGCAGTTTAACTACAACTTATCAGTACAACAGTTTACCACACTGTACCACATATAC
**
15490145 GTCAGCTTTGCTGTGTGCTATT
66 GTCAGCTTTGCTACGTGCTATT
* * * * *
15490167 ATCTGATCTGGTAATTTAACTACAACTTATTAGTACAGCAGTTTACCACACTGTACTACATATAC
1 ATCTGATCTGGCAGTTTAACTACAACTTATCAGTACAACAGTTTACCACACTGTACCACATATAC
* *
15490232 GTCAGTTTTGCTACGTGTTATT
66 GTCAGCTTTGCTACGTGCTATT
*
15490254 ATCTGATTTGGCAGTTTAAACTACAAC
1 ATCTGATCTGGCAGTTT-AACTACAAC
15490281 ATGTCTGTAC
Statistics
Matches: 95, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
87 86 0.91
88 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (87 bp):
ATCTGATCTGGCAGTTTAACTACAACTTATCAGTACAACAGTTTACCACACTGTACCACATATAC
GTCAGCTTTGCTACGTGCTATT
Found at i:15491768 original size:16 final size:15
Alignment explanation
Indices: 15491747--15491796 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 15
15491737 ATGTGGAATA
15491747 AACTAAAATTAAAATT
1 AACT-AAATTAAAATT
15491763 AACTAAATATAAAATAT
1 AACTAAAT-TAAAAT-T
15491780 AA-TAAATTAAAAATT
1 AACTAAATT-AAAATT
15491795 AA
1 AA
15491797 AATATATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 8 0.26
16 20 0.65
17 3 0.10
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (15 bp):
AACTAAATTAAAATT
Found at i:15491797 original size:22 final size:24
Alignment explanation
Indices: 15491758--15491802 Score: 67
Period size: 22 Copynumber: 1.9 Consensus size: 24
15491748 ACTAAAATTA
15491758 AAATTAACTAAATATAAAATATAAT
1 AAATTAAC-AAATATAAAATATAAT
15491783 AAATTAA-AAAT-TAAAATATA
1 AAATTAACAAATATAAAATATA
15491803 TTTAAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 4 0.20
25 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATTAACAAATATAAAATATAAT
Found at i:15492630 original size:14 final size:14
Alignment explanation
Indices: 15492619--15492647 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15492609 TTTCAGTTAC
15492619 AGTTGGTTAGTTGA
1 AGTTGGTTAGTTGA
15492633 AGTTGGTTAGTTGA
1 AGTTGGTTAGTTGA
15492647 A
1 A
15492648 CTTGCAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (14 bp):
AGTTGGTTAGTTGA
Found at i:15498996 original size:26 final size:24
Alignment explanation
Indices: 15498965--15499014 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
15498955 CAATTCAAAA
*
15498965 TATCTACAATTTTTTTAATCTTATAT
1 TATCTACAATCTTTTT--TCTTATAT
*
15498991 TATCTATAATCTTTTTTCTTATAT
1 TATCTACAATCTTTTTTCTTATAT
15499015 AATATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
26 14 0.64
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (24 bp):
TATCTACAATCTTTTTTCTTATAT
Found at i:15500926 original size:8 final size:8
Alignment explanation
Indices: 15500913--15500949 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
15500903 ATTTTAATTC
15500913 TCAATTTT
1 TCAATTTT
15500921 TCAATTTT
1 TCAATTTT
15500929 TCAA-TTT
1 TCAATTTT
15500936 TCAATTTT
1 TCAATTTT
15500944 TCAATT
1 TCAATT
15500950 CATGTATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.25
8 21 0.75
ACGTcount: A:0.27, C:0.14, G:0.00, T:0.59
Consensus pattern (8 bp):
TCAATTTT
Found at i:15500934 original size:23 final size:22
Alignment explanation
Indices: 15500904--15500949 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
15500894 TTTTAAGAAA
15500904 TTTTAATTCTCAATTTTTCAAT
1 TTTTAATTCTCAATTTTTCAAT
*
15500926 TTTTCAATTTTCAATTTTTCAAT
1 TTTT-AATTCTCAATTTTTCAAT
15500949 T
1 T
15500950 CATGTATTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTAATTCTCAATTTTTCAAT
Found at i:15500936 original size:15 final size:15
Alignment explanation
Indices: 15500913--15500949 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
15500903 ATTTTAATTC
15500913 TCAATTTTTCAATTTT
1 TCAA-TTTTCAATTTT
15500929 TCAATTTTCAATTTT
1 TCAATTTTCAATTTT
15500944 TCAATT
1 TCAATT
15500950 CATGTATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.27, C:0.14, G:0.00, T:0.59
Consensus pattern (15 bp):
TCAATTTTCAATTTT
Found at i:15501016 original size:14 final size:15
Alignment explanation
Indices: 15500997--15501033 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
15500987 CTCGATAATC
15500997 ATATAATTAAA-AAA
1 ATATAATTAAATAAA
15501011 ATATAACTTAAATAAA
1 ATATAA-TTAAATAAA
15501027 AT-TAATT
1 ATATAATT
15501034 CTATGTGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 8 0.38
16 5 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATAATTAAATAAA
Found at i:15513553 original size:89 final size:89
Alignment explanation
Indices: 15512797--15513552 Score: 1128
Period size: 89 Copynumber: 8.5 Consensus size: 89
15512787 TCTGCTGCGC
* * * * *
15512797 TTGATCTACTTCACGCC---A-ATGAAGACAAGGTCTGTTCTCTTCGATCTACTCCACCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
15512858 ATAGGGAA-ACAAGATCTGTTGTCT
66 AT-GGGAAGACAAGATCTGTTATCT
* * *
15512882 TTGATCTACTTCACGTCAATACATGAAGACAAGATCTGCTTTTTCCTTCGATCTACTTCGCCACC
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG--TTTT-CTTCGATCTGCTTCGCCACC
*
15512947 AGTATGGGAAGACAAGATCTGTTACCT
63 AGTATGGGAAGACAAGATCTGTTATCT
* * *
15512974 TTGATCTACTTCACGCCAGTACATGAAGATAAGATCTGCTTTCTTCGATCTGTTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
15513039 ATGGGAAGACAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
*
15513063 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCTTCGATCTGCTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
15513128 ATGGGAAGACAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
*
15513152 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGTTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
15513217 ATGGGAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
*
15513241 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCGGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
*
15513306 ATGGGAAGGCAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * *
15513330 CTT-ATTTACTTCACGCCAGTACATGAAGACAAGATTTGCTTTCTTCGATCTGTTTCGCCACCAG
1 -TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAG
* *
15513394 TATGGGAAGGCAAGATTTGTTATCT
65 TATGGGAAGACAAGATCTGTTATCT
* * *
15513419 TTGATCTACTTCACGCCAGTACATGAAGACAAAATCTGCTTTCTTTGATCTGCTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
* * * *
15513484 ATGGGAAGGCAATATTTGGTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* *
15513508 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTATCTT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTT
15513553 TCCACCTGCC
Statistics
Matches: 621, Mismatches: 40, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
85 16 0.03
88 3 0.00
89 517 0.83
90 5 0.01
91 8 0.01
92 72 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (89 bp):
TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGT
ATGGGAAGACAAGATCTGTTATCT
Found at i:15533275 original size:5 final size:5
Alignment explanation
Indices: 15533265--15533292 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
15533255 ATAACCACAA
15533265 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
15533293 TATATTCTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:15535979 original size:42 final size:42
Alignment explanation
Indices: 15535933--15536110 Score: 185
Period size: 42 Copynumber: 4.2 Consensus size: 42
15535923 AGACTGAACA
* * * * * *
15535933 GAAGCTCATGAGAACTAAACGGAAACCTATAAGGGTTGAACG
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
* * *
15535975 GAAGCTCGTAAGAGCTGGACGGAAACCCATAAAGGTTAAACT
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
* *
15536017 GAAGCTCAAAAGAGCTGAATGGAAACCCATAAGGGTTAAACT
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
* * ** * * *
15536059 GAAGCTTAAAAGAGCTGAACAAAAACCCATTAGGGTTGAACA
1 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
*
15536101 GAAACTCATA
1 GAAGCTCATA
15536111 TGAGTTAACA
Statistics
Matches: 112, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 112 1.00
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
Found at i:15536228 original size:24 final size:24
Alignment explanation
Indices: 15536195--15536242 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
15536185 TACTTGGGTA
*
15536195 ATTTACCGTCAATTCATCCTTTGC
1 ATTTACCGTCAATTCATCATTTGC
*
15536219 ATTTATCGTCAATTCATCATTTGC
1 ATTTACCGTCAATTCATCATTTGC
15536243 CACAGAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (24 bp):
ATTTACCGTCAATTCATCATTTGC
Found at i:15539736 original size:17 final size:18
Alignment explanation
Indices: 15539696--15539736 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
15539686 ATGACCTTTC
*
15539696 TTGT-TGCGAAGCCCGTA
1 TTGTATGCGAAGCCCATA
*
15539713 TTATATGCGAA-CCCATA
1 TTGTATGCGAAGCCCATA
15539730 TTGTATG
1 TTGTATG
15539737 TTATTATGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (18 bp):
TTGTATGCGAAGCCCATA
Found at i:15539756 original size:18 final size:18
Alignment explanation
Indices: 15539733--15539767 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15539723 ACCCATATTG
15539733 TATGTTATTATGCGAACT
1 TATGTTATTATGCGAACT
* *
15539751 TATGTTGTTGTGCGAAC
1 TATGTTATTATGCGAAC
15539768 CTTAATATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (18 bp):
TATGTTATTATGCGAACT
Found at i:15544804 original size:29 final size:30
Alignment explanation
Indices: 15544771--15544839 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
15544761 GAGAGAGAGA
* *
15544771 AAAAAAAAGAGTTAGTTAAAAGAG-TACAC
1 AAAAAAAAGAGCTAGCTAAAAGAGTTACAC
* *
15544800 AAAAAAAA-AGCTAGCTAGAAGAGTTAGAC
1 AAAAAAAAGAGCTAGCTAAAAGAGTTACAC
15544829 AAAATAAAAGA
1 AAAA-AAAAGA
15544840 TAGTCATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 12 0.36
29 16 0.48
30 4 0.12
31 1 0.03
ACGTcount: A:0.61, C:0.07, G:0.17, T:0.14
Consensus pattern (30 bp):
AAAAAAAAGAGCTAGCTAAAAGAGTTACAC
Found at i:15547919 original size:65 final size:65
Alignment explanation
Indices: 15547843--15547971 Score: 249
Period size: 65 Copynumber: 2.0 Consensus size: 65
15547833 ATTTGAAATT
*
15547843 GCCTTAAATATAATTTAGCCATAAATTTAATGTTAGTGGATGAGGTTGATCATTTCCATTGAATG
1 GCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCATTGAATG
15547908 GCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCATTGAAT
1 GCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCATTGAAT
15547972 TCCACTTGGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (65 bp):
GCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCATTGAATG
Found at i:15551278 original size:17 final size:16
Alignment explanation
Indices: 15551237--15551284 Score: 64
Period size: 15 Copynumber: 3.0 Consensus size: 16
15551227 ATAAATAGGA
15551237 TATTTTT-ATTTCTTT
1 TATTTTTAATTTCTTT
15551252 TATTTTTAATTT-TTT
1 TATTTTTAATTTCTTT
15551267 TATTTGTTTAATTTCTTT
1 TA-TT-TTTAATTTCTTT
15551285 CTAGTTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 12 0.41
16 6 0.21
17 8 0.28
18 3 0.10
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (16 bp):
TATTTTTAATTTCTTT
Found at i:15563127 original size:30 final size:30
Alignment explanation
Indices: 15563091--15563153 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
15563081 ACTTATTTTA
15563091 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
15563121 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
15563151 TTG
1 TTG
15563154 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:15563667 original size:25 final size:22
Alignment explanation
Indices: 15563632--15563679 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 22
15563622 TTATGTGTCG
15563632 TTTTTAAAATTTATTAAACAATATA
1 TTTTTAAAA-TT-TTAAA-AATATA
*
15563657 TTTTTATAATTTTAAAAATATA
1 TTTTTAAAATTTTAAAAATATA
15563679 T
1 T
15563680 AATTAAATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 5 0.23
24 2 0.09
25 8 0.36
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTTAAAATTTTAAAAATATA
Found at i:15566905 original size:46 final size:46
Alignment explanation
Indices: 15566782--15566906 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
15566772 CAGGGCTTAA
* * * *
15566782 TATTCTTGTATTCTTGAGT-TCGCAACATATGCAAGAGCTCGGAACC
1 TATTCTTGTACTCTCGAGTCT-ACAACATATGCAAGAGCTCAGAACC
** ** *
15566828 TAAACTTGTACTCTCGAGTCTACAATTTATGCAAGATCTCAGAACC
1 TATTCTTGTACTCTCGAGTCTACAACATATGCAAGAGCTCAGAACC
15566874 TATTCTTGTACTCTCGAGTCTACAACATATGCA
1 TATTCTTGTACTCTCGAGTCTACAACATATGCA
15566907 GGAACTCGAA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 64 0.98
47 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (46 bp):
TATTCTTGTACTCTCGAGTCTACAACATATGCAAGAGCTCAGAACC
Found at i:15566920 original size:46 final size:46
Alignment explanation
Indices: 15566782--15566920 Score: 147
Period size: 46 Copynumber: 3.0 Consensus size: 46
15566772 CAGGGCTTAA
* * * * *
15566782 TATTCTTGTATTCTTGAGT-TCGCAACATATGCAAGAGCTCGGAACC
1 TATTCTTGTACTCTCGAGTCT-ACAACATATGCAAGAACTCGAAACC
** ** *
15566828 TAAACTTGTACTCTCGAGTCTACAATTTATGCAAGATCTC-AGAACC
1 TATTCTTGTACTCTCGAGTCTACAACATATGCAAGAACTCGA-AACC
*
15566874 TATTCTTGTACTCTCGAGTCTACAACATATGCAGGAACTCGAAACC
1 TATTCTTGTACTCTCGAGTCTACAACATATGCAAGAACTCGAAACC
15566920 T
1 T
15566921 GAGCAACACT
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
46 73 0.97
47 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (46 bp):
TATTCTTGTACTCTCGAGTCTACAACATATGCAAGAACTCGAAACC
Found at i:15567835 original size:13 final size:13
Alignment explanation
Indices: 15567817--15567841 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15567807 TGGTATATTT
15567817 TCCCTTGAGAATA
1 TCCCTTGAGAATA
15567830 TCCCTTGAGAAT
1 TCCCTTGAGAAT
15567842 CTTTAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (13 bp):
TCCCTTGAGAATA
Found at i:15568718 original size:115 final size:115
Alignment explanation
Indices: 15568571--15568803 Score: 349
Period size: 115 Copynumber: 2.0 Consensus size: 115
15568561 CTAATTTACC
* * * * * **
15568571 ATTTTTTGAGTATATGGGGCAAAATCCAATCCATTTCCTTCTACAAAGGTCTCCATGGTACTTTT
1 ATTTTTTGAATAGATGAGACAAAATACAATCCAACTCCTTCTACAAAGGTCTCCATGGTACTTTT
* *
15568636 ACCGTCTTCATACATACATAAAATGGAAGGAAGAATGATGGACTTTGAAT
66 ACCGCCTTCATACATACATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
* *
15568686 ATTTTTTGAATAGATGAGACAAAATACAATCCAACTCCTTGTACAAGGGTCTCCATGGTACTTTT
1 ATTTTTTGAATAGATGAGACAAAATACAATCCAACTCCTTCTACAAAGGTCTCCATGGTACTTTT
* *
15568751 ACCGCCTTGATACATGCATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
66 ACCGCCTTCATACATACATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
15568801 ATT
1 ATT
15568804 GAATTTACTT
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 105 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (115 bp):
ATTTTTTGAATAGATGAGACAAAATACAATCCAACTCCTTCTACAAAGGTCTCCATGGTACTTTT
ACCGCCTTCATACATACATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
Found at i:15572883 original size:20 final size:20
Alignment explanation
Indices: 15572860--15572898 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15572850 CAAATACTAT
15572860 AAAAAATAGAAAAATTAAAG
1 AAAAAATAGAAAAATTAAAG
** *
15572880 AAAAGTTATAAAAATTAAA
1 AAAAAATAGAAAAATTAAA
15572899 AATTATTGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAAAATAGAAAAATTAAAG
Found at i:15573135 original size:21 final size:19
Alignment explanation
Indices: 15573111--15573153 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
15573101 TTCATGTCCC
15573111 TATTTTACAATTTTTAAAACA
1 TATTTT-CAA-TTTTAAAACA
* *
15573132 TATTTTTAATTTTAAAATA
1 TATTTTCAATTTTAAAACA
15573151 TAT
1 TAT
15573154 AAAATAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 2 0.10
21 6 0.30
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTTTCAATTTTAAAACA
Found at i:15573224 original size:41 final size:41
Alignment explanation
Indices: 15573163--15573245 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
15573153 TAAAATAAAC
* * * *
15573163 TTAGTTTTTAGATATTTTTAATTATTGAATAGTGAATTGGA
1 TTAGTTTCTAAATATGTTTAATTATTGAATAGTAAATTGGA
15573204 TTAGTTTCTAAATATGTTTAATTATTGAATAGTAAATTGGA
1 TTAGTTTCTAAATATGTTTAATTATTGAATAGTAAATTGGA
15573245 T
1 T
15573246 CGGTCCATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (41 bp):
TTAGTTTCTAAATATGTTTAATTATTGAATAGTAAATTGGA
Found at i:15574516 original size:16 final size:17
Alignment explanation
Indices: 15574495--15574531 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
15574485 GATTAATATT
15574495 AAATATA-G-TTTAATTA
1 AAATATATGATTTAA-TA
15574511 AAATATATGATTTAATA
1 AAATATATGATTTAATA
15574528 AAAT
1 AAAT
15574532 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 7 0.37
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:15574579 original size:101 final size:93
Alignment explanation
Indices: 15574473--15574755 Score: 308
Period size: 91 Copynumber: 3.0 Consensus size: 93
15574463 ACTATAAAAG
* * * * *
15574473 ATAATTTGAAATGATTAATATTAAATATAGTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTT---
*
15574537 ATAATTATAACTAATAAATTATCTTATATGAATTTGT
62 -T-A-T-TAA-TAATAAATTATCTTATATGAATTTAT
* *
15574574 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAA--TTATT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTATT
* *
15574637 GATAATAAATTTTCTTATATGAATTTAT
66 AATAATAAATTATCTTATATGAATTTAT
* * *
15574665 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCTT
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTATT
15574728 AATAATAAAATGT-TCTTATATGAATTTA
66 AATAAT-AAAT-TATCTTATATGAATTTA
15574756 CTAAAATCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
91 87 0.53
92 21 0.13
93 2 0.01
94 1 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 47 0.29
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTTATT
AATAATAAATTATCTTATATGAATTTAT
Found at i:15574580 original size:47 final size:46
Alignment explanation
Indices: 15574514--15574755 Score: 148
Period size: 47 Copynumber: 5.3 Consensus size: 46
15574504 TTAATTAAAA
*
15574514 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTATCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTATCT
* * * * * *
15574561 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
* * * *
15574606 TA-AT-AATAATATATAATTTCATAA-AATTATTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATTA-TAATAATAAATTATCT
* *
15574652 TATATGAATTTATACAATTTAAAATAA-T-TAATATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-ATCT
* * *
15574697 TA-AT-AATGATATATAATTTCATAA-AATTCTTAATAATAAAATGT-TCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAAT-AAAT-TATCT
15574744 TATATGAATTTA
1 TATATGAATTTA
15574756 CTAAAATCAA
Statistics
Matches: 148, Mismatches: 28, Indels: 37
0.69 0.13 0.17
Matches are distributed among these distances:
43 6 0.04
44 38 0.26
45 22 0.15
46 16 0.11
47 47 0.32
48 16 0.11
49 3 0.02
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTATCT
Found at i:15574602 original size:26 final size:28
Alignment explanation
Indices: 15574573--15574633 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
15574563 TATGAATTTG
*
15574573 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
15574599 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
15574627 TAAAATT
1 TATAATT
15574634 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:15574636 original size:44 final size:43
Alignment explanation
Indices: 15574573--15574715 Score: 130
Period size: 44 Copynumber: 3.2 Consensus size: 43
15574563 TATGAATTTG
15574573 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAATAATA
* **
15574617 TATAATTTCATAA-AATTATTGA-TAATA-AATTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAATATAA-TTTAATA-AT-AA--TA
* * *
15574664 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAATAATA
15574708 TATAATTT
1 TATAATTT
15574716 CATAAAATTC
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
42 2 0.03
43 8 0.10
44 28 0.36
45 6 0.08
46 5 0.06
47 18 0.23
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATAATA
Found at i:15577896 original size:40 final size:40
Alignment explanation
Indices: 15577848--15577923 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
15577838 TATTTTGTGG
15577848 ATAAATAGTTGTTAAATTCAATTTGTAAAGGACTTTGTCT
1 ATAAATAGTTGTTAAATTCAATTTGTAAAGGACTTTGTCT
15577888 ATAAATAGTTGTTAAATTCAATTTGTAAAGGACTTT
1 ATAAATAGTTGTTAAATTCAATTTGTAAAGGACTTT
15577924 TGACATTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (40 bp):
ATAAATAGTTGTTAAATTCAATTTGTAAAGGACTTTGTCT
Found at i:15578236 original size:21 final size:21
Alignment explanation
Indices: 15578210--15578253 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
15578200 CTCTTTAATA
15578210 CCATACCATTTCATACCAATT
1 CCATACCATTTCATACCAATT
**
15578231 CCATACCATTTTGTACCAATT
1 CCATACCATTTCATACCAATT
15578252 CC
1 CC
15578254 CAAATACCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.34, G:0.02, T:0.34
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:15580415 original size:15 final size:15
Alignment explanation
Indices: 15580395--15580424 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15580385 TATCCATCCG
15580395 TTTTTTAAATATAAT
1 TTTTTTAAATATAAT
*
15580410 TTTTTTAATTATAAT
1 TTTTTTAAATATAAT
15580425 AATTAACGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTTTAAATATAAT
Found at i:15583989 original size:21 final size:23
Alignment explanation
Indices: 15583965--15584007 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
15583955 TCGACACCAC
15583965 ATTA-AATTTC-TCATACATAGT
1 ATTATAATTTCATCATACATAGT
*
15583986 ATTATTATTTTCATCATACATA
1 ATTA-TAATTTCATCATACATA
15584008 CATAGATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
23 5 0.28
24 9 0.50
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTATAATTTCATCATACATAGT
Found at i:15585395 original size:15 final size:15
Alignment explanation
Indices: 15585375--15585407 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15585365 GTATGAAAAA
15585375 AAAAAT-ACAAACATT
1 AAAAATAACAAA-ATT
15585390 AAAAATAACAAAATT
1 AAAAATAACAAAATT
15585405 AAA
1 AAA
15585408 TTTGTAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAAATAACAAAATT
Found at i:15589393 original size:23 final size:23
Alignment explanation
Indices: 15589366--15589437 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
15589356 GCTATACGCC
15589366 AAGATGAGTAAGACTATAGCTGA
1 AAGATGAGTAAGACTATAGCTGA
* * *
15589389 AAGATG-CTATGACGTCAT-GAT-A
1 AAGATGAGTAAGAC-T-ATAGCTGA
* *
15589411 AAAATGAGTAAGACCATAGCTGA
1 AAGATGAGTAAGACTATAGCTGA
15589434 AAGA
1 AAGA
15589438 CAATATGGCA
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
21 2 0.06
22 13 0.37
23 18 0.51
24 2 0.06
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (23 bp):
AAGATGAGTAAGACTATAGCTGA
Found at i:15589433 original size:45 final size:45
Alignment explanation
Indices: 15589369--15589528 Score: 203
Period size: 45 Copynumber: 3.6 Consensus size: 45
15589359 ATACGCCAAG
* *
15589369 ATGAGTAAGACTATAGCTGAAAGATGCTATGACGTCATGATAAAA
1 ATGAGTAAGACTATAGCTGAAAGACGCTATGACATCATGATAAAA
* ** * *
15589414 ATGAGTAAGACCATAGCTGAAAGACAATATGGCATCATGACAAAA
1 ATGAGTAAGACTATAGCTGAAAGACGCTATGACATCATGATAAAA
* *
15589459 ATGAGTAATACTATAGCTGAAAGACGCTATGACATCATGGTAAAA
1 ATGAGTAAGACTATAGCTGAAAGACGCTATGACATCATGATAAAA
* * **
15589504 AGGACTAAGAAAATAGCTGAAAGAC
1 ATGAGTAAGACTATAGCTGAAAGAC
15589529 TTTATGGAAT
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (45 bp):
ATGAGTAAGACTATAGCTGAAAGACGCTATGACATCATGATAAAA
Found at i:15604967 original size:40 final size:39
Alignment explanation
Indices: 15604900--15605006 Score: 117
Period size: 40 Copynumber: 2.7 Consensus size: 39
15604890 GATAAAGCAG
* * * *
15604900 GAAAACGCTTCCTCGAGGTAGCGCTTTGTCTACGTGGAC
1 GAAAACGCTTCCTTGAGGAAGCACTTTGTCCACGTGGAC
**
15604939 AGAAAACGCTTCCTTGAGGGCGCACTTTGTGTCCACGTGGAC
1 -GAAAACGCTTCCTTGAGGAAGCAC-TT-TGTCCACGTGGAC
*
15604981 -AAAGCGCTTCCTTGAGGAAGCACTTT
1 GAAAACGCTTCCTTGAGGAAGCACTTT
15605007 CCCCGTTTGT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 40 0.70
41 2 0.04
42 12 0.21
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
GAAAACGCTTCCTTGAGGAAGCACTTTGTCCACGTGGAC
Found at i:15605853 original size:97 final size:97
Alignment explanation
Indices: 15605732--15605999 Score: 441
Period size: 97 Copynumber: 2.8 Consensus size: 97
15605722 TAACAACTAG
* *
15605732 ATTTATTTGA-TTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTAAAAATTTA
1 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTA
*
15605796 TAATTAATTTGCTCAAGTAACCCTAAACCCTA
66 TAATTAATTTACTCAAGTAACCCTAAACCCTA
* * *
15605828 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATATAATTTTTAAAAAAATTA
1 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTA
15605893 TAATTAATTTACTCAAGTAACCCTAAACCCTA
66 TAATTAATTTACTCAAGTAACCCTAAACCCTA
* * *
15605925 ATTTCTTTGATTTTTTCCTTAAAAACCATAAACATTAAACCCTAATCTAATTTTTT-AAAATTTA
1 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTA
15605989 TAATTAATTTA
66 TAATTAATTTA
15606000 ATTAAGAAAC
Statistics
Matches: 159, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
96 28 0.18
97 131 0.82
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (97 bp):
ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTA
TAATTAATTTACTCAAGTAACCCTAAACCCTA
Found at i:15612367 original size:16 final size:16
Alignment explanation
Indices: 15612346--15612376 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15612336 CATGTTAGAA
15612346 AATATAAATTTGAAAC
1 AATATAAATTTGAAAC
*
15612362 AATATATATTTGAAA
1 AATATAAATTTGAAA
15612377 ACTTTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (16 bp):
AATATAAATTTGAAAC
Found at i:15612547 original size:27 final size:27
Alignment explanation
Indices: 15612505--15612566 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
15612495 TAGATTTTTT
*
15612505 TAAA-TTTATAATTTTTAAAAAAATTA
1 TAAATTTTAGAATTTTTAAAAAAATTA
* * *
15612531 TAAATTTTAGAATTTTTATAAATATTT
1 TAAATTTTAGAATTTTTAAAAAAATTA
*
15612558 TGAATTTTA
1 TAAATTTTA
15612567 AAAATTATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TAAATTTTAGAATTTTTAAAAAAATTA
Found at i:15612566 original size:18 final size:19
Alignment explanation
Indices: 15612528--15612565 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15612518 TTTAAAAAAA
*
15612528 TTATAAAT-TTTAGAATTT
1 TTATAAATATTTTGAATTT
15612546 TTATAAATATTTTGAATTT
1 TTATAAATATTTTGAATTT
15612565 T
1 T
15612566 AAAAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATAAATATTTTGAATTT
Found at i:15612571 original size:18 final size:21
Alignment explanation
Indices: 15612534--15612577 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
15612524 AAAATTATAA
*
15612534 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTTAAAAATT
15612554 ATTTT-GAA-TTTTAAAAATT
1 ATTTTAGAATTTTTAAAAATT
15612573 ATTTT
1 ATTTT
15612578 CAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTTAGAATTTTTAAAAATT
Found at i:15614584 original size:69 final size:67
Alignment explanation
Indices: 15614511--15614724 Score: 207
Period size: 69 Copynumber: 3.1 Consensus size: 67
15614501 TTAAACTTAA
* **
15614511 TATTATTTTAGTTTTATTATTAATATTGTTTAATTTATTGTATATTATTATCTTAGATTTATCAT
1 TATTATTTTAATTTTATTATTAATATT-TTTAATTTATCATATATTATTAT-TTAGATTTATCAT
*
15614576 GCAT
64 GTAT
* * * * ** *
15614580 TATTATTTGTAATTTATCAATATTATTATTTTAAATTCATCAT-TAACATTATTTAAATTTATCA
1 TATTATTT-TAATTT-T-ATTATTAATATTTTTAATTTATCATATATTATTATTTAGATTTATCA
15614644 TGTA-
63 TGTAT
* * *
15614648 TATTTATTTTAAATTTATCATTAATATTTTTAAATTTATCATATATTATTATTTTGAATTTATCA
1 TA-TTATTTTAATTTTATTATTAATATTTTT-AATTTATCATATATTATTATTTAG-ATTTATCA
*
15614713 CGTAT
63 TGTAT
15614718 TATTATT
1 TATTATT
15614725 ATTAGAATAA
Statistics
Matches: 115, Mismatches: 22, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
66 11 0.10
67 10 0.09
68 16 0.14
69 44 0.38
70 14 0.12
71 10 0.09
72 10 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (67 bp):
TATTATTTTAATTTTATTATTAATATTTTTAATTTATCATATATTATTATTTAGATTTATCATGT
AT
Found at i:15614655 original size:46 final size:45
Alignment explanation
Indices: 15614511--15614712 Score: 185
Period size: 45 Copynumber: 4.4 Consensus size: 45
15614501 TTAAACTTAA
** * * **
15614511 TATTATTTTAGTTTTATTATTAATATTGTTT-AATTTATTGTATAT
1 TATTATTTTAAATTTATCATTAACATT-TTTAAATTTATCATATAT
* * * ** *
15614556 TATTATCTTAGATTTATCATGCATTATTATTTGTAATTTATCA-ATAT
1 TATTATTTTAAATTTATCAT-TAACATT-TTT-AAATTTATCATATAT
* *
15614603 TATTATTTTAAATTCATCATTAACATTATTTAAATTTATCATGTA-
1 TATTATTTTAAATTTATCATTAACATT-TTTAAATTTATCATATAT
*
15614648 TATTTATTTTAAATTTATCATTAATATTTTTAAATTTATCATATAT
1 TA-TTATTTTAAATTTATCATTAACATTTTTAAATTTATCATATAT
*
15614694 TATTATTTTGAATTTATCA
1 TATTATTTTAAATTTATCA
15614713 CGTATTATTA
Statistics
Matches: 131, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
45 60 0.46
46 43 0.33
47 21 0.16
48 7 0.05
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (45 bp):
TATTATTTTAAATTTATCATTAACATTTTTAAATTTATCATATAT
Found at i:15614660 original size:24 final size:25
Alignment explanation
Indices: 15614510--15614724 Score: 155
Period size: 24 Copynumber: 9.3 Consensus size: 25
15614500 TTTAAACTTA
** *
15614510 ATATTATTTTAGTTTTATTAT-TA-
1 ATATTATTTTAAATTTATCATGTAT
*
15614533 ATATT-GTTT-AATTTAT--TGTAT
1 ATATTATTTTAAATTTATCATGTAT
* * *
15614554 ATTATTATCTTAGATTTATCATGCAT
1 A-TATTATTTTAAATTTATCATGTAT
*
15614580 -TATTATTTGT-AATTTATCA-ATAT
1 ATATTATTT-TAAATTTATCATGTAT
*
15614603 -TATTATTTTAAATTCATCAT-TA-
1 ATATTATTTTAAATTTATCATGTAT
*
15614625 ACATTA-TTTAAATTTATCATGTAT
1 ATATTATTTTAAATTTATCATGTAT
15614649 AT-TTATTTTAAATTTATCAT-TA-
1 ATATTATTTTAAATTTATCATGTAT
*
15614671 ATA-T-TTTTAAATTTATCATATAT
1 ATATTATTTTAAATTTATCATGTAT
* *
15614694 -TATTATTTTGAATTTATCACGTAT
1 ATATTATTTTAAATTTATCATGTAT
15614718 -TATTATT
1 ATATTATT
15614725 ATTAGAATAA
Statistics
Matches: 155, Mismatches: 18, Indels: 37
0.74 0.09 0.18
Matches are distributed among these distances:
19 1 0.01
20 2 0.01
21 21 0.14
22 28 0.18
23 39 0.25
24 59 0.38
25 1 0.01
26 4 0.03
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
ATATTATTTTAAATTTATCATGTAT
Found at i:15614689 original size:114 final size:114
Alignment explanation
Indices: 15614567--15614779 Score: 274
Period size: 114 Copynumber: 1.9 Consensus size: 114
15614557 ATTATCTTAG
* * *
15614567 ATTTATCATGCATTATTA-TTTGTAATTTATCA-ATATTATTATT-TTA-AATTCATCATTAACA
1 ATTTATCATACATTATTATTTTG-AATTTATCACATATTATTATTATTAGAA-TAATCATCAA-A
*
15614628 TTATTTAAATTTATCATGTA-TATTTATTTTAAATTTATCATTAATATTTTTAA
63 TT-TTTAAATTTATCATGTATTA-TTATTTCAAATTTATCATTAATATTTTTAA
* * *
15614681 ATTTATCATATATTATTATTTTGAATTTATCACGTATTATTATTATTAGAATAATCATCCAATTT
1 ATTTATCATACATTATTATTTTGAATTTATCACATATTATTATTATTAGAATAATCATCAAATTT
*
15614746 TTAAATTTATTATGTATTATTATTTCAAATTTAT
66 TTAAATTTATCATGTATTATTATTTCAAATTTAT
15614780 TATATATTGT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
114 55 0.64
115 19 0.22
116 10 0.12
117 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (114 bp):
ATTTATCATACATTATTATTTTGAATTTATCACATATTATTATTATTAGAATAATCATCAAATTT
TTAAATTTATCATGTATTATTATTTCAAATTTATCATTAATATTTTTAA
Found at i:15614775 original size:24 final size:23
Alignment explanation
Indices: 15614534--15614801 Score: 162
Period size: 24 Copynumber: 11.6 Consensus size: 23
15614524 TTATTATTAA
* **
15614534 TATTGTTT-AATTTATTGTATAT
1 TATTATTTAAATTTATCATATAT
* **
15614556 TATTATCTTAGATTTATCATGCAT
1 TATTAT-TTAAATTTATCATATAT
*
15614580 TATTATTTGTAATTTATCA-ATAT
1 TATTATTT-AAATTTATCATATAT
* *
15614603 TATTATTTTAAATTCATCAT-TAA
1 TATTA-TTTAAATTTATCATATAT
* *
15614626 CATTATTTAAATTTATCATGTA-
1 TATTATTTAAATTTATCATATAT
*
15614648 TATTTATTTTAAATTTATCAT-TAA
1 TA-TTA-TTTAAATTTATCATATAT
15614672 TATT-TTTAAATTTATCATATAT
1 TATTATTTAAATTTATCATATAT
*
15614694 TATTATTTTGAATTTATCACGTATTAT
1 TATTA-TTTAAATTTATCA--TA-TAT
* **
15614721 TATTA-TTAGAA-TAATCATCCA-
1 TATTATTTA-AATTTATCATATAT
* *
15614742 -ATT-TTTAAATTTATTATGTAT
1 TATTATTTAAATTTATCATATAT
*
15614763 TATTATTTCAAATTTATTATATAT
1 TATTATTT-AAATTTATCATATAT
*
15614787 TGTTTATTGTAAATT
1 T-ATTATT-TAAATT
15614802 ACTCTATTCA
Statistics
Matches: 194, Mismatches: 28, Indels: 45
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.01
20 12 0.06
21 14 0.07
22 29 0.15
23 38 0.20
24 69 0.36
25 17 0.09
26 5 0.03
27 8 0.04
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTATTTAAATTTATCATATAT
Found at i:15618652 original size:19 final size:18
Alignment explanation
Indices: 15618597--15618659 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 18
15618587 TAATAATGAT
15618597 TAAAT-TATTTTATTATA
1 TAAATATATTTTATTATA
*
15618614 TAAAAATATTTTA--A-A
1 TAAATATATTTTATTATA
15618629 T--ATATATTTTATTAGTA
1 TAAATATATTTTATTA-TA
15618646 TAAATATAATTTTA
1 TAAATAT-ATTTTA
15618660 ATTCTTACTA
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
13 9 0.25
15 3 0.08
16 1 0.03
17 6 0.17
18 7 0.19
19 4 0.11
20 6 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TAAATATATTTTATTATA
Found at i:15618910 original size:13 final size:13
Alignment explanation
Indices: 15618892--15618916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15618882 TTAAACTCGT
15618892 ATACACATTTTTC
1 ATACACATTTTTC
15618905 ATACACATTTTT
1 ATACACATTTTT
15618917 AATTGAGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (13 bp):
ATACACATTTTTC
Found at i:15629635 original size:42 final size:42
Alignment explanation
Indices: 15629583--15629676 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
15629573 TGCACAGTTG
* * *
15629583 GCAGAAAAGCGCGTCCAGCTGAATGCGTTTTCCTTTGAGTAT
1 GCAGGAAAGCGCATCCAGCTGAATGCGTTTTCCTTTGAGCAT
*
15629625 GCAGGAAAGCGTATCCAGCTGAATGCGTTTTCCTTTGAGCAT
1 GCAGGAAAGCGCATCCAGCTGAATGCGTTTTCCTTTGAGCAT
15629667 GCAGGAAAGC
1 GCAGGAAAGC
15629677 CTATCCAACT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (42 bp):
GCAGGAAAGCGCATCCAGCTGAATGCGTTTTCCTTTGAGCAT
Found at i:15629682 original size:42 final size:42
Alignment explanation
Indices: 15629596--15629683 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
15629586 GAAAAGCGCG
* *
15629596 TCCAGCTGAATGCGTTTTCCTTTGAGTATGCAGGAAAGCGTA
1 TCCAGCTGAATGCGTTTTCCTTTGAGCATGCAGGAAAGCCTA
15629638 TCCAGCTGAATGCGTTTTCCTTTGAGCATGCAGGAAAGCCTA
1 TCCAGCTGAATGCGTTTTCCTTTGAGCATGCAGGAAAGCCTA
15629680 TCCA
1 TCCA
15629684 ACTGGATTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (42 bp):
TCCAGCTGAATGCGTTTTCCTTTGAGCATGCAGGAAAGCCTA
Found at i:15633175 original size:10 final size:9
Alignment explanation
Indices: 15633142--15633176 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
15633132 TGTGACCCCT
15633142 ATTTTCAAA
1 ATTTTCAAA
15633151 ATTTTCAAA
1 ATTTTCAAA
15633160 ATTTTCTAAA
1 ATTTTC-AAA
*
15633170 ACTTTCA
1 ATTTTCA
15633177 GTTTTGTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.46
Consensus pattern (9 bp):
ATTTTCAAA
Found at i:15635966 original size:18 final size:18
Alignment explanation
Indices: 15635943--15635978 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
15635933 GTCGATGGTA
15635943 GGTTGTAT-TTTTGTAATG
1 GGTTGTATGTTTTG-AATG
15635961 GGTTGTATGTTTTGAATG
1 GGTTGTATGTTTTGAATG
15635979 ATTTGGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.53
Consensus pattern (18 bp):
GGTTGTATGTTTTGAATG
Found at i:15640939 original size:16 final size:16
Alignment explanation
Indices: 15640893--15640943 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
15640883 CTATAGAAAG
* *
15640893 TTCCATCCTTCTAGTT
1 TTCCATCCTTCCAATT
*
15640909 TTCTATACCTT-CAATT
1 TTCCAT-CCTTCCAATT
15640925 TTCCATCCTTCCAATT
1 TTCCATCCTTCCAATT
15640941 TTC
1 TTC
15640944 TTTCCACTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.14
16 21 0.72
17 4 0.14
ACGTcount: A:0.18, C:0.31, G:0.02, T:0.49
Consensus pattern (16 bp):
TTCCATCCTTCCAATT
Found at i:15642882 original size:21 final size:21
Alignment explanation
Indices: 15642852--15642940 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
15642842 CTCACAAAGA
*
15642852 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTGACTTAGAC
* * *
15642872 AAAAAGAGAAGCGACTTGGGC
1 AAAAAGAGAAGTGACTTAGAC
* *
15642893 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTGACTTAGAC
15642914 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTGACTTAGAC
15642938 AAA
1 AAA
15642941 TCTTTTTTTG
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
20 6 0.11
21 34 0.61
23 1 0.02
24 15 0.27
ACGTcount: A:0.52, C:0.10, G:0.26, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTGACTTAGAC
Found at i:15647983 original size:26 final size:26
Alignment explanation
Indices: 15647954--15648037 Score: 98
Period size: 26 Copynumber: 3.2 Consensus size: 26
15647944 GCCAACACAC
15647954 CAGTATCGCAGTAAAGCTGCCAGTAA
1 CAGTATCGCAGTAAAGCTGCCAGTAA
* * *
15647980 CAGTATCGCAGCAAAGTTGCCAATAA
1 CAGTATCGCAGTAAAGCTGCCAGTAA
* * *
15648006 CAGTATTGCA-TCAAAGCTTCTAGTAA
1 CAGTATCGCAGT-AAAGCTGCCAGTAA
15648032 CAGTAT
1 CAGTAT
15648038 ACTTCCTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (26 bp):
CAGTATCGCAGTAAAGCTGCCAGTAA
Found at i:15651158 original size:271 final size:269
Alignment explanation
Indices: 15650656--15651183 Score: 762
Period size: 271 Copynumber: 2.0 Consensus size: 269
15650646 AAGTATAGGG
*
15650656 AGGTATATTTCCTAACCTTCCACTCAAAAAATCTAAATCTGAGTAGTATTTAGCTTTCAAAGTAC
1 AGGTATATTTCCTAACATTCCACTCAAAAAATCTAAATCTGAGTAGTATTTAGCTTTCAAAGTAC
15650721 GTGCAAGTAATGAATTGGGAAAATTAATCAACCTCCAAACTTATTTTGCAAATAAAGATAAATTG
66 GTGCAAGTAATGAATTGGGAAAATTAATCAACCTCCAAACTTATTTTGCAAATAAAGATAAATTG
* *
15650786 AATTTAGCTAAACTGCAAAAACCCAAACTCCCATTTTCCTTCAATTGACATAACTTCCTCCATTC
131 AATTTAGCTAAACTACAAAAACCCAAACTCCCATTTTCCTTCAATTCACATAACTTCCTCCATTC
*
15650851 GCACAAATGAATTCCCCTCTTACCATGACATTTTTGCCCACAAAAAATTC-TCACAAATACTCTT
196 ACACAAATGAATTCCCCTC-TACCATGACATTTTTG-CCACAAAAAATTCAT-ACAAATACTCTT
15650915 TCAGGGATAAAA
258 TCAGGGATAAAA
* * *
15650927 AGGTATATTTCCTAACATTGCATTCATAAAATCTAAATCT-AGGTAGTATTTAGCTTTCAAAGTA
1 AGGTATATTTCCTAACATTCCACTCAAAAAATCTAAATCTGA-GTAGTATTTAGCTTTCAAAGTA
* * * *
15650991 CTTGCAAGTAATGAATTGGGAAAATTAATCAACCTCCTCCAACCTTGTTTTGCAAGTAAAGATAA
65 CGTGCAAGTAATGAATTGGGAAAATTAATCAA---CCTCCAAACTTATTTTGCAAATAAAGATAA
* * *
15651056 ATTGATTTTAGCTAAACTACGAAAACCCAAAC-CCCTATTTTCCTTCAATTCACATAACTTCCTT
127 ATTGAATTTAGCTAAACTACAAAAACCCAAACTCCC-ATTTTCCTTCAATTCACATAACTTCCTC
* * * * *
15651120 CATTCACACCAATGTA-TCCCACTC-A-TATGACCTTTTTGCCACCAAAAATTCATACAAATACT
191 CATTCACACAAATGAATTCCC-CTCTACCATGACATTTTTGCCACAAAAAATTCATACAAATACT
15651182 CT
255 CT
15651184 CCATTTCATG
Statistics
Matches: 231, Mismatches: 19, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
270 24 0.10
271 101 0.44
272 1 0.00
273 7 0.03
274 98 0.42
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (269 bp):
AGGTATATTTCCTAACATTCCACTCAAAAAATCTAAATCTGAGTAGTATTTAGCTTTCAAAGTAC
GTGCAAGTAATGAATTGGGAAAATTAATCAACCTCCAAACTTATTTTGCAAATAAAGATAAATTG
AATTTAGCTAAACTACAAAAACCCAAACTCCCATTTTCCTTCAATTCACATAACTTCCTCCATTC
ACACAAATGAATTCCCCTCTACCATGACATTTTTGCCACAAAAAATTCATACAAATACTCTTTCA
GGGATAAAA
Found at i:15656598 original size:6 final size:6
Alignment explanation
Indices: 15656582--15656613 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
15656572 ACACATTATA
15656582 GGAGA- GGAGAG GGAGAG GGAGAG GGAGAG GGA
1 GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGA
15656614 TGGGTGGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (6 bp):
GGAGAG
Found at i:15658086 original size:28 final size:28
Alignment explanation
Indices: 15658042--15658183 Score: 117
Period size: 28 Copynumber: 4.9 Consensus size: 28
15658032 GGTTTTGGAG
*
15658042 AAAATAATTTA-AGGTTTAAGGTTTTTAA
1 AAAATAAATTAGA-GTTTAAGGTTTTTAA
*
15658070 AAAATAAATTAGAGTTTATGGTTTTTCTAAA
1 AAAATAAATTAGAGTTTAAGG-TTTT-T-AA
* **
15658101 ATAAATTAAATTAGGGTTTATTGTTTTTAA
1 A-AAA-TAAATTAGAGTTTAAGGTTTTTAA
* *
15658131 AAAATAAATTAGGGTTTATAGATTTTT-A
1 AAAATAAATTAGAGTTTA-AGGTTTTTAA
* * *
15658159 AAAATAAATTTGTGTTTAGGGTTTT
1 AAAATAAATTAGAGTTTAAGGTTTT
15658184 AGGGTTTTCG
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
27 5 0.05
28 48 0.50
29 13 0.14
30 4 0.04
31 4 0.04
32 7 0.07
33 15 0.16
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.45
Consensus pattern (28 bp):
AAAATAAATTAGAGTTTAAGGTTTTTAA
Found at i:15658114 original size:33 final size:33
Alignment explanation
Indices: 15658074--15658141 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
15658064 TTTTAAAAAA
**
15658074 TAAATTAGAGTTTATGGTTTTTCTAAAATAAAT
1 TAAATTAGAGTTTATGGTTTTTAAAAAATAAAT
* *
15658107 TAAATTAGGGTTTATTGTTTTTAAAAAATAAAT
1 TAAATTAGAGTTTATGGTTTTTAAAAAATAAAT
15658140 TA
1 TA
15658142 GGGTTTATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (33 bp):
TAAATTAGAGTTTATGGTTTTTAAAAAATAAAT
Found at i:15658538 original size:25 final size:25
Alignment explanation
Indices: 15658509--15658572 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
15658499 ACAGAATGAT
*
15658509 AAATTAGAGAAGTTTAGAAGAATAG
1 AAATTAGAGAAGTTCAGAAGAATAG
* *
15658534 AAATTAAAGAAGTTCAGAAGAATAT
1 AAATTAGAGAAGTTCAGAAGAATAG
15658559 AAATT-GAAGAAGTT
1 AAATTAG-AGAAGTT
15658573 GATAAGGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.53, C:0.02, G:0.20, T:0.25
Consensus pattern (25 bp):
AAATTAGAGAAGTTCAGAAGAATAG
Found at i:15661740 original size:59 final size:59
Alignment explanation
Indices: 15661564--15661755 Score: 230
Period size: 61 Copynumber: 3.2 Consensus size: 59
15661554 TCTATTGCCT
* *
15661564 TATTCAAAAGAACTTCTATTTTATTAAATAGGACAAAATATAAAAATAA-TT-TACCATTAAAA
1 TATT-AAAAAAACTTCTATTTTATTAAATA-GACAAAATATAAAAATAATTTGTA-CA--AATA
* *
15661626 TATTAAAACAACTTCTATTTTATTAAATAGGACAAATTATAAAAATAATTTGTACAAATA
1 TATTAAAAAAACTTCTATTTTATTAAATA-GACAAAATATAAAAATAATTTGTACAAATA
* *
15661686 TATTCAAAAAAACTTCCATTTTATTAAAT-GA-AACAATATAAAAACAATTTGTACAAATA
1 TATT-AAAAAAACTTCTATTTTATTAAATAGACAA-AATATAAAAATAATTTGTACAAATA
15661745 TATTAAAAAAA
1 TATTAAAAAAA
15661756 TAATGCATGT
Statistics
Matches: 119, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
58 9 0.08
59 29 0.24
60 7 0.06
61 64 0.54
62 8 0.07
63 2 0.02
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (59 bp):
TATTAAAAAAACTTCTATTTTATTAAATAGACAAAATATAAAAATAATTTGTACAAATA
Found at i:15662130 original size:18 final size:18
Alignment explanation
Indices: 15662107--15662142 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15662097 GGAAAAAGAA
*
15662107 ACATATAAGGGTTAGGAT
1 ACATATAAGGGATAGGAT
15662125 ACATATAAGGGATAGGAT
1 ACATATAAGGGATAGGAT
15662143 GCGCACCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (18 bp):
ACATATAAGGGATAGGAT
Found at i:15663972 original size:11 final size:11
Alignment explanation
Indices: 15663910--15663973 Score: 51
Period size: 11 Copynumber: 5.7 Consensus size: 11
15663900 AGAGAGCTTT
15663910 AAGAAATTTAG
1 AAGAAATTTAG
15663921 AGAGAAATTT-G
1 A-AGAAATTTAG
***
15663932 AGAGCTTTTTA-
1 A-AGAAATTTAG
15663943 AAGAAATTTAG
1 AAGAAATTTAG
*
15663954 ATAGAAATTTGG
1 A-AGAAATTTAG
15663966 AAGAAATT
1 AAGAAATT
15663974 AAAGGAAACT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
10 6 0.14
11 18 0.43
12 18 0.43
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.31
Consensus pattern (11 bp):
AAGAAATTTAG
Found at i:15668612 original size:42 final size:42
Alignment explanation
Indices: 15668499--15668668 Score: 128
Period size: 43 Copynumber: 4.0 Consensus size: 42
15668489 CAAAAAGCTC
* * * ***
15668499 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAA
* * * *
15668541 ATAACGATGCCACTGCCCCAGACAGGGTCTTACACAAAATCAT
1 AT-ACGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAA
* **
15668584 ATACGATGCCAATGTCCCGGACATGGTCTTACATGTAAATCGCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACA-CAAAAT--CAA
* ** *
15668629 AT-TGATGCCAACT-TCCCAGACGCGGTCTTACACAATATCA
1 ATACGATGCCAA-TGTCCCAGACATGGTCTTACACAAAATCA
15668669 CATATCAGAT
Statistics
Matches: 99, Mismatches: 24, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.29
43 39 0.39
44 24 0.24
45 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:15668659 original size:86 final size:84
Alignment explanation
Indices: 15668499--15668668 Score: 202
Period size: 85 Copynumber: 2.0 Consensus size: 84
15668489 CAAAAAGCTC
*
15668499 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAACGATGCCACTGCCCCAGAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAAT-ACGATGCCACTGCCCCAGAC
15668564 AGGGTCTTACACAAAATCAT
65 AGGGTCTTACACAAAATCAT
* * * * *
15668584 ATACGATGCCAATGTCCCGGACATGGTCTTACATGTAAATCGCAAAT-TGATGCCAACT-TCCCA
1 ATACAATGCCAACGTCCCAGACATGGTCTTACATGT-AAT--CAAATACGATGCC-ACTGCCCCA
*
15668647 GAC-GCGGTCTTACACAATATCA
62 GACAG-GGTCTTACACAAAATCA
15668669 CATATCAGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
85 33 0.45
86 32 0.44
87 3 0.04
88 5 0.07
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (84 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATACGATGCCACTGCCCCAGACA
GGGTCTTACACAAAATCAT
Found at i:15675018 original size:28 final size:28
Alignment explanation
Indices: 15674960--15675019 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
15674950 TACTGCATAA
*
15674960 TGTTACTGTATTGGGCTAAGGCCCACCT
1 TGTTACTGTATTGGGCTAAGGCCCACAT
* *
15674988 TGTTTCTGTATTGGGCTGAA-GCCTACAT
1 TGTTACTGTATTGGGCT-AAGGCCCACAT
15675016 TGTT
1 TGTT
15675020 CTATTCTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 26 0.93
29 2 0.07
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (28 bp):
TGTTACTGTATTGGGCTAAGGCCCACAT
Found at i:15685446 original size:31 final size:32
Alignment explanation
Indices: 15685406--15685468 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
15685396 GTATGCATTT
15685406 AATTAATTTTT-AAAATTAAAAAATTATATAAA
1 AATTAATTTTTAAAAATTAAAAAATTAT-TAAA
15685438 AATT-ATTTTTAAAAATTAAAAAATTATTAAA
1 AATTAATTTTTAAAAATTAAAAAATTATTAAA
15685469 GTCATTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
31 10 0.33
32 20 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (32 bp):
AATTAATTTTTAAAAATTAAAAAATTATTAAA
Found at i:15686757 original size:23 final size:23
Alignment explanation
Indices: 15686731--15686793 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
15686721 ATTTTTAATT
15686731 TATTAAATAATAGATTTTTACAA
1 TATTAAATAATAGATTTTTACAA
* *
15686754 TATTAAA-AATATGCTTTTTACTA
1 TATTAAATAATA-GATTTTTACAA
*
15686777 -ATTAAATGATA-ATTTTT
1 TATTAAATAATAGATTTTT
15686794 CTAATTTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 5 0.15
22 10 0.29
23 19 0.56
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (23 bp):
TATTAAATAATAGATTTTTACAA
Found at i:15687118 original size:63 final size:64
Alignment explanation
Indices: 15687042--15687168 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
15687032 TTATATAATC
* ** * *
15687042 GTCATTGTCATTTGAATATGTCTTGT-GTTTTCTTAAATTATTGCTTTAATGCTTTAATAAAAT
1 GTCATTATCATTTGAATATGAATTGTGGTTTTCTCAAATTATTACTTTAATGCTTTAATAAAAT
*
15687105 GTCATTATTATTTGAATATGAATTGTGGTTTTCTCAAATTATTACTTTAATGCTTTAATAAAAT
1 GTCATTATCATTTGAATATGAATTGTGGTTTTCTCAAATTATTACTTTAATGCTTTAATAAAAT
15687169 ATCTAATCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
63 22 0.39
64 35 0.61
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.50
Consensus pattern (64 bp):
GTCATTATCATTTGAATATGAATTGTGGTTTTCTCAAATTATTACTTTAATGCTTTAATAAAAT
Found at i:15687565 original size:26 final size:26
Alignment explanation
Indices: 15687531--15687585 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
15687521 AATATATTTA
15687531 TCATATGGGTTATAAGTTAAATTCAG
1 TCATATGGGTTATAAGTTAAATTCAG
* *
15687557 TCATGTGGGTTATAAGTTAAATTTAG
1 TCATATGGGTTATAAGTTAAATTCAG
15687583 TCA
1 TCA
15687586 ATTAATGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (26 bp):
TCATATGGGTTATAAGTTAAATTCAG
Found at i:15697105 original size:18 final size:17
Alignment explanation
Indices: 15697035--15697109 Score: 59
Period size: 19 Copynumber: 4.3 Consensus size: 17
15697025 TCAAAATATT
15697035 ATAATAAAT--TTATAAA
1 ATAATAAATAATT-TAAA
15697051 ATAATTAAA-AATTTAGAA
1 ATAA-TAAATAATTTA-AA
*
15697069 ATATACAAATAATTTTAAA
1 ATA-ATAAATAA-TTTAAA
15697088 ATACATAAATAATTT-AA
1 ATA-ATAAATAATTTAAA
15697105 ATAAT
1 ATAAT
15697110 TTATTTATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
16 6 0.12
17 11 0.22
18 13 0.27
19 15 0.31
20 4 0.08
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (17 bp):
ATAATAAATAATTTAAA
Found at i:15699197 original size:12 final size:12
Alignment explanation
Indices: 15699174--15699207 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15699164 ACATTTACAA
15699174 AACAACATAAAAT
1 AACAA-ATAAAAT
15699187 AACAAATAAAAT
1 AACAAATAAAAT
*
15699199 AACATATAA
1 AACAAATAA
15699208 CATATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (12 bp):
AACAAATAAAAT
Found at i:15699669 original size:24 final size:24
Alignment explanation
Indices: 15699642--15699693 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15699632 TTAGTAAGTC
*
15699642 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15699666 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15699690 AAAT
1 AAAT
15699694 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15702726 original size:67 final size:67
Alignment explanation
Indices: 15702633--15702877 Score: 323
Period size: 67 Copynumber: 3.7 Consensus size: 67
15702623 CATAGCTCGA
* * * * * *
15702633 CTATGACAACATAGAGAGTCCACCAGGACAGTAAACATGGGGTAAAATGTTTAAGACCGTAGCTT
1 CTATGGCAACATAAAGAGTCCGCCAGGACATTAAACATGGGGTAAAATGTATAAGATCGTAGCTT
15702698 AG
66 AG
*
15702700 CTATGGCAACATAAAGAG-CTCGCCAGGACATTAAACATGGGGTAAAATGTGTAAGATCGTAGCT
1 CTATGGCAACATAAAGAGTC-CGCCAGGACATTAAACATGGGGTAAAATGTATAAGATCGTAGCT
15702764 TAG
65 TAG
* *
15702767 CTATGGCAACATAAAGAG-CTCGCCAGGACATTAAACATGGGGTAAGATGTATAAGATCATAGCT
1 CTATGGCAACATAAAGAGTC-CGCCAGGACATTAAACATGGGGTAAAATGTATAAGATCGTAGCT
* *
15702831 CAA
65 TAG
* * * *
15702834 CTATGGAAACATAGAGAGTCCGCTAAGACATTAAACATGGGGTA
1 CTATGGCAACATAAAGAGTCCGCCAGGACATTAAACATGGGGTA
15702878 TGATGTGTAA
Statistics
Matches: 161, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
66 1 0.01
67 159 0.99
68 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (67 bp):
CTATGGCAACATAAAGAGTCCGCCAGGACATTAAACATGGGGTAAAATGTATAAGATCGTAGCTT
AG
Found at i:15702883 original size:67 final size:67
Alignment explanation
Indices: 15702615--15702905 Score: 318
Period size: 67 Copynumber: 4.3 Consensus size: 67
15702605 AGGCATAATA
* * * *
15702615 TGTAAGACCATAGCTCGACTAT-GACAACATAGAGAG-TCCACCAGGACAGTAAACATGGGGTAA
1 TGTAAGACCATAGCTCAACTATGGA-AACATAAAGAGCT-CGCCAGGACATTAAACATGGGGTAA
15702678 AATG
64 AATG
* * * * *
15702682 TTTAAGACCGTAGCTTAGCTATGGCAACATAAAGAGCTCGCCAGGACATTAAACATGGGGTAAAA
1 TGTAAGACCATAGCTCAACTATGGAAACATAAAGAGCTCGCCAGGACATTAAACATGGGGTAAAA
15702747 TG
66 TG
* * * * * *
15702749 TGTAAGATCGTAGCTTAGCTATGGCAACATAAAGAGCTCGCCAGGACATTAAACATGGGGTAAGA
1 TGTAAGACCATAGCTCAACTATGGAAACATAAAGAGCTCGCCAGGACATTAAACATGGGGTAAAA
15702814 TG
66 TG
* * * * * **
15702816 TATAAGATCATAGCTCAACTATGGAAACATAGAGAG-TCCGCTAAGACATTAAACATGGGGTATG
1 TGTAAGACCATAGCTCAACTATGGAAACATAAAGAGCT-CGCCAGGACATTAAACATGGGGTAAA
15702880 ATG
65 ATG
* *
15702883 TGTAAGACTATAGCTCGACTATG
1 TGTAAGACCATAGCTCAACTATG
15702906 ACAGCATATA
Statistics
Matches: 196, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
66 1 0.01
67 193 0.98
68 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (67 bp):
TGTAAGACCATAGCTCAACTATGGAAACATAAAGAGCTCGCCAGGACATTAAACATGGGGTAAAA
TG
Found at i:15706656 original size:23 final size:25
Alignment explanation
Indices: 15706592--15706680 Score: 107
Period size: 24 Copynumber: 3.8 Consensus size: 25
15706582 AATATTGCAA
*
15706592 AAAGTGCCACATTTTGATT-GCATC
1 AAAGTGCCACATTTTCATTCGCATC
* *
15706616 AAAGTGTCACA-TTTCATTCGCACC
1 AAAGTGCCACATTTTCATTCGCATC
15706640 AAAGTG-C-CATTTTCATTCGCATC
1 AAAGTGCCACATTTTCATTCGCATC
*
15706663 AAAGTGCCATA-TTTCATT
1 AAAGTGCCACATTTTCATT
15706681 TGTGCGTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
22 2 0.04
23 25 0.45
24 28 0.50
25 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (25 bp):
AAAGTGCCACATTTTCATTCGCATC
Found at i:15709767 original size:14 final size:14
Alignment explanation
Indices: 15709748--15709781 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
15709738 AAAGATGAAA
15709748 AGGTTATAGAATAC
1 AGGTTATAGAATAC
15709762 AGGTTATAGAATAC
1 AGGTTATAGAATAC
15709776 AGGTTA
1 AGGTTA
15709782 AAGCCCATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (14 bp):
AGGTTATAGAATAC
Found at i:15709897 original size:44 final size:45
Alignment explanation
Indices: 15709846--15710087 Score: 298
Period size: 44 Copynumber: 5.5 Consensus size: 45
15709836 TTATATTTAG
* * * *
15709846 CAGGTACTATGTACCGA-TGTTGGCTATTTGTCATTTATACGCAA
1 CAGGTACTATGTATCGAGTGTTGGCTATGTGCCATTTATATGCAA
* * *
15709890 CAAGTACTATGT-GCTAGTGTTGGCTATGTGCCATTTATATGCAA
1 CAGGTACTATGTATCGAGTGTTGGCTATGTGCCATTTATATGCAA
* *
15709934 CAGGTACTATGCATCG-GTGTTGGCTATGTGTCATTTATATGCAA
1 CAGGTACTATGTATCGAGTGTTGGCTATGTGCCATTTATATGCAA
* * *
15709978 CAGGTACTATGTA-CCAGTGTTGGCTATGTGCCATTTATATGTAG
1 CAGGTACTATGTATCGAGTGTTGGCTATGTGCCATTTATATGCAA
* * *
15710022 CAAGTAATATGTATC-AGTGTTGGCTATGTGCCATTTATATGCAG
1 CAGGTACTATGTATCGAGTGTTGGCTATGTGCCATTTATATGCAA
*
15710066 CAGGTACTATGTATTGA-TGTTG
1 CAGGTACTATGTATCGAGTGTTG
15710088 TAGTAGCAGA
Statistics
Matches: 171, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.02
44 165 0.96
45 3 0.02
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (45 bp):
CAGGTACTATGTATCGAGTGTTGGCTATGTGCCATTTATATGCAA
Found at i:15709985 original size:88 final size:88
Alignment explanation
Indices: 15709846--15710078 Score: 331
Period size: 88 Copynumber: 2.6 Consensus size: 88
15709836 TTATATTTAG
* * * * * * *
15709846 CAGGTACTATGTACCGATGTTGGCTATTTGTCATTTATACGCAACAAGTACTATGTGCTAGTGTT
1 CAGGTACTATGTATCGGTGTTGGCTATGTGTCATTTATATGCAACAGGTACTATGTACCAGTGTT
15709911 GGCTATGTGCCATTTATATGCAA
66 GGCTATGTGCCATTTATATGCAA
*
15709934 CAGGTACTATGCATCGGTGTTGGCTATGTGTCATTTATATGCAACAGGTACTATGTACCAGTGTT
1 CAGGTACTATGTATCGGTGTTGGCTATGTGTCATTTATATGCAACAGGTACTATGTACCAGTGTT
* *
15709999 GGCTATGTGCCATTTATATGTAG
66 GGCTATGTGCCATTTATATGCAA
* * * * *
15710022 CAAGTAATATGTATCAGTGTTGGCTATGTGCCATTTATATGCAGCAGGTACTATGTA
1 CAGGTACTATGTATCGGTGTTGGCTATGTGTCATTTATATGCAACAGGTACTATGTA
15710079 TTGATGTTGT
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 129 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (88 bp):
CAGGTACTATGTATCGGTGTTGGCTATGTGTCATTTATATGCAACAGGTACTATGTACCAGTGTT
GGCTATGTGCCATTTATATGCAA
Found at i:15710087 original size:132 final size:132
Alignment explanation
Indices: 15709846--15710087 Score: 353
Period size: 132 Copynumber: 1.8 Consensus size: 132
15709836 TTATATTTAG
* * *
15709846 CAGGTACTATGTACCGATGTTGGCTATTTGTCATTTATACGCAACAAGTACTATGTGCTAGTGTT
1 CAGGTACTATGTACCGATGTTGGCTATGTGCCATTTATACGCAACAAGTAATATGTGCTAGTGTT
*
15709911 GGCTATGTGCCATTTATATGCAACAGGTACTATGCATCGGTGTTGGCTATGTGTCATTTATATGC
66 GGCTATGTGCCATTTATATGCAACAGGTACTATGCATCGATGTTGGCTATGTGTCATTTATATGC
15709976 AA
131 AA
* * * *
15709978 CAGGTACTATGTACC-AGTGTTGGCTATGTGCCATTTATATGTAGCAAGTAATATGT-ATCAGTG
1 CAGGTACTATGTACCGA-TGTTGGCTATGTGCCATTTATACGCAACAAGTAATATGTGCT-AGTG
* * *
15710041 TTGGCTATGTGCCATTTATATGCAGCAGGTACTATGTATTGATGTTG
64 TTGGCTATGTGCCATTTATATGCAACAGGTACTATGCATCGATGTTG
15710088 TAGTAGCAGA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
131 2 0.02
132 95 0.98
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (132 bp):
CAGGTACTATGTACCGATGTTGGCTATGTGCCATTTATACGCAACAAGTAATATGTGCTAGTGTT
GGCTATGTGCCATTTATATGCAACAGGTACTATGCATCGATGTTGGCTATGTGTCATTTATATGC
AA
Found at i:15728584 original size:189 final size:189
Alignment explanation
Indices: 15728236--15728618 Score: 590
Period size: 189 Copynumber: 2.0 Consensus size: 189
15728226 GTAATCCTGA
*
15728236 CCTTCCAAATCAACATTGTAGACCCTCTATCCTTTGTCGTAGTATTTTCGCCATAACATTTTTAG
1 CCTTCCAAATCAACATTCTAGACCCTCTATCCTTTGTCGTAGTATTTTCGCCATAACATTTTTAG
* * *
15728301 TTTTTTACTTGTTCGTTTGCATATTATTCATGTAATTATTCTCGAATTCTCTATTGCATTCTTAC
66 TTTTTTACTTGTTCATTTGCATATTATTCACGTAATTATTCTCGAATTCTCCATTGCATTCTTAC
* * * * * * *
15728366 TCTTATCTTTTCATAGTATTTTTCATTATTTATCAGTTATACATTGTACACATCATTAT
131 TCTTATCCTGTCATAGCATTTTCCATTATTTATCAGTTACACATTGAACAAATCATTAT
* *
15728425 CCTTTCAAATCAACATTCTAGACCCTCTATCCTTTTTCGTAGTATCTTT-GCCATAACATTTTTA
1 CCTTCCAAATCAACATTCTAGACCCTCTATCCTTTGTCGTAGTAT-TTTCGCCATAACATTTTTA
* *
15728489 GTTTTTTACTTGTTCATTTTCATATTATTTACGTAATTATTCTCGAATT-TGCCATTGCATTCTT
65 GTTTTTTACTTGTTCATTTGCATATTATTCACGTAATTATTCTCGAATTCT-CCATTGCATTCTT
*
15728553 ACTCTTGTCCTGTCATAGCATTTTCCATTATTTATCAGTTACACATTGAACAAATCATTAT
129 ACTCTTATCCTGTCATAGCATTTTCCATTATTTATCAGTTACACATTGAACAAATCATTAT
15728614 CCTTC
1 CCTTC
15728619 AATTTACCAC
Statistics
Matches: 175, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
188 1 0.01
189 171 0.98
190 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.47
Consensus pattern (189 bp):
CCTTCCAAATCAACATTCTAGACCCTCTATCCTTTGTCGTAGTATTTTCGCCATAACATTTTTAG
TTTTTTACTTGTTCATTTGCATATTATTCACGTAATTATTCTCGAATTCTCCATTGCATTCTTAC
TCTTATCCTGTCATAGCATTTTCCATTATTTATCAGTTACACATTGAACAAATCATTAT
Found at i:15734904 original size:21 final size:18
Alignment explanation
Indices: 15734865--15734914 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
15734855 TATATTATAA
15734865 TATTAATTAATAAAATAT
1 TATTAATTAATAAAATAT
* *
15734883 TATTAATTATTAAAGTAT
1 TATTAATTAATAAAATAT
15734901 TATT-ATTAATAAAA
1 TATTAATTAATAAAA
15734915 ATATCATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TATTAATTAATAAAATAT
Found at i:15737413 original size:227 final size:227
Alignment explanation
Indices: 15737018--15737468 Score: 875
Period size: 227 Copynumber: 2.0 Consensus size: 227
15737008 TATCTTTTCA
*
15737018 AAATTTGCATAGCTTTTATATCATTTGATATATGATGAAATGATTGTATATATACATTTGATTTG
1 AAATTTGCATAGCTTTTATATCATTTGATATATGATGAAATAATTGTATATATACATTTGATTTG
15737083 AGTATCATGGTATAGTTATGCAAATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAA
66 AGTATCATGGTATAGTTATGCAAATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAA
15737148 AGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTA
131 AGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTA
15737213 ATTTCAAGGTAAGTTAAGTAAATTTTATAAGT
196 ATTTCAAGGTAAGTTAAGTAAATTTTATAAGT
* *
15737245 AAATTTGCATAGCTTTTATATTATTTGATATATGATGAAATAATTGTATATATACATTTTATTTG
1 AAATTTGCATAGCTTTTATATCATTTGATATATGATGAAATAATTGTATATATACATTTGATTTG
15737310 AGTATCATGGTATAGTTATGCAAATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAA
66 AGTATCATGGTATAGTTATGCAAATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAA
15737375 AGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTA
131 AGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTA
15737440 ATTTCAAGGTAAGTTAAGTAAATTTTATA
196 ATTTCAAGGTAAGTTAAGTAAATTTTATA
15737469 TAGACTTATT
Statistics
Matches: 221, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
227 221 1.00
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (227 bp):
AAATTTGCATAGCTTTTATATCATTTGATATATGATGAAATAATTGTATATATACATTTGATTTG
AGTATCATGGTATAGTTATGCAAATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAA
AGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTA
ATTTCAAGGTAAGTTAAGTAAATTTTATAAGT
Found at i:15737823 original size:373 final size:373
Alignment explanation
Indices: 15737138--15737873 Score: 1454
Period size: 373 Copynumber: 2.0 Consensus size: 373
15737128 ATTGTGAAAT
15737138 TGCACATGAAAGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTA
1 TGCACATGAAAGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTA
15737203 AATTGTTGTAATTTCAAGGTAAGTTAAGTAAATTTTATAAGTAAATTTGCATAGCTTTTATATTA
66 AATTGTTGTAATTTCAAGGTAAGTTAAGTAAATTTTATAAGTAAATTTGCATAGCTTTTATATTA
15737268 TTTGATATATGATGAAATAATTGTATATATACATTTTATTTGAGTATCATGGTATAGTTATGCAA
131 TTTGATATATGATGAAATAATTGTATATATACATTTTATTTGAGTATCATGGTATAGTTATGCAA
15737333 ATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAAAGCATAAGGATGATAAAGGATAT
196 ATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAAAGCATAAGGATGATAAAGGATAT
15737398 CATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTAATTTCAAGGTAAGTTAAGTAAAT
261 CATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTAATTTCAAGGTAAGTTAAGTAAAT
15737463 TTTATATAGACTTATTAAGCATTCAAAATGCTTACCCATTATTCAAAA
326 TTTATATAGACTTATTAAGCATTCAAAATGCTTACCCATTATTCAAAA
15737511 TGCACATGAAAGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTA
1 TGCACATGAAAGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTA
15737576 AATTGTTGTAATTTCAAGGTAAGTTAAGTAAATTTTATAAGTAAATTTGCATAGCTTTTATATTA
66 AATTGTTGTAATTTCAAGGTAAGTTAAGTAAATTTTATAAGTAAATTTGCATAGCTTTTATATTA
*
15737641 TTTGATATATGATGAAATGATTGTATATATACATTTTATTTGAGTATCATGGTATAGTTATGCAA
131 TTTGATATATGATGAAATAATTGTATATATACATTTTATTTGAGTATCATGGTATAGTTATGCAA
15737706 ATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAAAGCATAAGGATGATAAAGGATAT
196 ATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAAAGCATAAGGATGATAAAGGATAT
*
15737771 CATGTTAGATACCACTTTATTACAATTGTTTAAATTTTTGTAATTTCAAGGTAAGTTAAGTAAAT
261 CATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTAATTTCAAGGTAAGTTAAGTAAAT
15737836 TTTATATAGACTTATTAAGCATTCAAAATGCTTACCCA
326 TTTATATAGACTTATTAAGCATTCAAAATGCTTACCCA
15737874 CTAGAAAGCT
Statistics
Matches: 361, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
373 361 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (373 bp):
TGCACATGAAAGCATAAGGATGATAAAGGATATCATGTTAGATACCACTTTATTACAATTGTTTA
AATTGTTGTAATTTCAAGGTAAGTTAAGTAAATTTTATAAGTAAATTTGCATAGCTTTTATATTA
TTTGATATATGATGAAATAATTGTATATATACATTTTATTTGAGTATCATGGTATAGTTATGCAA
ATGAACTAACCTTTTTTGGTGTATTGTGAAATTGCACATGAAAGCATAAGGATGATAAAGGATAT
CATGTTAGATACCACTTTATTACAATTGTTTAAATTGTTGTAATTTCAAGGTAAGTTAAGTAAAT
TTTATATAGACTTATTAAGCATTCAAAATGCTTACCCATTATTCAAAA
Done.