Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 56 of 228
Found at i:16693036 original size:44 final size:44
Alignment explanation
Indices: 16692856--16693185 Score: 163
Period size: 44 Copynumber: 7.5 Consensus size: 44
16692846 CCAATAATTC
* *
16692856 TATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * ** * ** ** ** * *
16692900 TATCTCTCTAAGCAATAATGGAGCAGATCAAAGATGGCAAATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * *
16692944 TACCTCCCTGGGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
*
16692988 TATCTCCCTAGGCAGCAGCGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * ** *
16693032 TATCTCCCTAGGTAGTAGTAGAGTAGATCGAGGATGGCAGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * *
16693076 TACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCT-AGG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
*
16693120 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* *
16693164 TATCTCCCTAAGCAGTAGTGGA
1 TATCTCCCTAGGCAGCAGTGGA
16693186 GCAGATCGAA
Statistics
Matches: 200, Mismatches: 70, Indels: 32
0.66 0.23 0.11
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 39 0.19
44 113 0.56
45 31 0.16
46 5 0.03
47 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:16693037 original size:132 final size:132
Alignment explanation
Indices: 16692800--16693254 Score: 739
Period size: 132 Copynumber: 3.4 Consensus size: 132
16692790 GGAGCAGGTT
* * * *
16692800 GATGGCGAATTTTACCTCCCTGAGGTTATAGTGGAGTACATTGAAGCCAATAATTCTATCTCCTT
1 GATGGCAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
* * * *
16692865 GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAAGCAATAATGGAGCAGATCA
66 GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
16692930 AA
131 AA
*
16692932 GATGGCAAATTTTACCTCCCTGGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
* * * * * *
16692997 AGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGTAGTAGTAGAGTAGATCG
66 GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
*
16693062 AG
131 AA
*
16693064 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
16693129 GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
66 GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
16693194 AA
131 AA
**
16693196 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
1 GATGGCAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
16693255 TGAAGATTAC
Statistics
Matches: 297, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 297 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GATGGCAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
GGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
AA
Found at i:16693332 original size:107 final size:107
Alignment explanation
Indices: 16693146--16693361 Score: 371
Period size: 107 Copynumber: 2.0 Consensus size: 107
16693136 AGTGGAATAG
*
16693146 ATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTAC
1 ATTGAAGATTACAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTAC
*
16693211 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
66 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCT
* *
16693253 ATTGAAGATTACAGATATTATCTCCCTCAGCAGTAGTGGAGCAGAT-TAAGGATGGCGGATTTTA
1 ATTGAAGATTACAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-GATGGCGGATTTTA
*
16693317 TCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCT
65 CCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCT
16693360 AT
1 AT
16693362 CTCTCTAGAC
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
106 2 0.02
107 101 0.98
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (107 bp):
ATTGAAGATTACAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTAC
CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCT
Found at i:16695204 original size:18 final size:18
Alignment explanation
Indices: 16695183--16695243 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
16695173 ATTCATATGT
*
16695183 ATTTTATAGTATATATAC
1 ATTTTATAATATATATAC
* *
16695201 ATTTCATAATATTTATAC
1 ATTTTATAATATATATAC
*
16695219 ATTTTCTATAATATACATAC
1 A-TTT-TATAATATATATAC
16695239 ATTTT
1 ATTTT
16695244 TTATATCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 17 0.49
19 6 0.17
20 12 0.34
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTTTATAATATATATAC
Found at i:16695229 original size:20 final size:20
Alignment explanation
Indices: 16695187--16695248 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
16695177 ATATGTATTT
*
16695187 TATAGTATATATACA-TTTC
1 TATAATATATATACATTTTC
*
16695206 -ATAATATTTATACATTTTC
1 TATAATATATATACATTTTC
* *
16695225 TATAATATACATACATTTTT
1 TATAATATATATACATTTTC
16695245 TATA
1 TATA
16695249 TCTTTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.33
19 4 0.11
20 20 0.56
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.50
Consensus pattern (20 bp):
TATAATATATATACATTTTC
Found at i:16707832 original size:27 final size:27
Alignment explanation
Indices: 16707794--16707849 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
16707784 AAATTAAATG
*
16707794 AATTGTTATTATTTTTTATTTATTCAT
1 AATTATTATTATTTTTTATTTATTCAT
16707821 AATTATTATTATTTTTTATTTATTCAT
1 AATTATTATTATTTTTTATTTATTCAT
16707848 AA
1 AA
16707850 AGACACCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (27 bp):
AATTATTATTATTTTTTATTTATTCAT
Found at i:16707860 original size:27 final size:27
Alignment explanation
Indices: 16707803--16707860 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
16707793 GAATTGTTAT
** * *
16707803 TATTTTTTATTTATTCATAATTATTAT
1 TATTTTTTATTTATTCATAAAGATCAC
16707830 TATTTTTTATTTATTCATAAAGA-CACC
1 TATTTTTTATTTATTCATAAAGATCA-C
16707857 TATT
1 TATT
16707861 GAAAGATGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.59
Consensus pattern (27 bp):
TATTTTTTATTTATTCATAAAGATCAC
Found at i:16709648 original size:16 final size:16
Alignment explanation
Indices: 16709570--16709636 Score: 98
Period size: 16 Copynumber: 4.2 Consensus size: 16
16709560 AAAAACAGGA
16709570 AGAAAAAAATGTATAT
1 AGAAAAAAATGTATAT
* * * *
16709586 AGATATATATCTATAT
1 AGAAAAAAATGTATAT
16709602 AGAAAAAAATGTATAT
1 AGAAAAAAATGTATAT
16709618 AGAAAAAAATGTATAT
1 AGAAAAAAATGTATAT
16709634 AGA
1 AGA
16709637 TATATATGTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.58, C:0.01, G:0.12, T:0.28
Consensus pattern (16 bp):
AGAAAAAAATGTATAT
Found at i:16709675 original size:42 final size:42
Alignment explanation
Indices: 16709610--16709689 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
16709600 ATAGAAAAAA
**
16709610 ATGTATATAGAAAAAAATGTATAT-AGATATATATGTATAGAT
1 ATGTATATAGAAAAAAAAATATATGA-ATATATATGTATAGAT
*
16709652 ATGTATATA-AATAAAAAAATATATGAATATGTATGTAT
1 ATGTATATAGAA-AAAAAAATATATGAATATATATGTAT
16709690 CTATTAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 2 0.06
42 30 0.91
43 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.36
Consensus pattern (42 bp):
ATGTATATAGAAAAAAAAATATATGAATATATATGTATAGAT
Found at i:16709804 original size:17 final size:17
Alignment explanation
Indices: 16709782--16709814 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
16709772 GAGTTTATAC
16709782 ATATAATGAT-TTAAAAT
1 ATATAAT-ATATTAAAAT
16709799 ATATAATATATTAAAA
1 ATATAATATATTAAAA
16709815 GAATTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATATAATATATTAAAAT
Found at i:16711820 original size:157 final size:157
Alignment explanation
Indices: 16711467--16711781 Score: 481
Period size: 157 Copynumber: 2.0 Consensus size: 157
16711457 AATTACAAAT
* * * *
16711467 GAACAAAATCTTACAAACCAAGTTGCTTCAAGAGCTTTTTGTGCCAAGAAAAATCTGGATTTTTA
1 GAACAAAATCTCACAAACCAAGATGCATCAAGACCTTTTTGTGCCAAGAAAAATCTGGATTTTTA
* * *
16711532 TTGGGGGCAAAAAGGAATTGGTTTTTATTTTAGTTTACAAGTTTTTTTTATATATATAATTTTCT
66 TTGGGGGCAAAAAGGAATAGGTTTTTATTTTAGTTTACAAGTGTTTTTTATATAAATAATTTTCT
* *
16711597 ACAGTTTTAAATTTTTTAGATTTTTAA
131 AAAGTTTTAAATGTTTTAGATTTTTAA
* * * *
16711624 GAACAAAATCTCACAAACCAAGTTGCTTCAAGAGCTTTTTGTGCCAAGAAAAATCTGGGTTTTTA
1 GAACAAAATCTCACAAACCAAGATGCATCAAGACCTTTTTGTGCCAAGAAAAATCTGGATTTTTA
*
16711689 TTGGGGGCAAAAGGGAATAGGTTTTTATTTTAGTTTAC-AG-GTTTTTTATATAAATAATTTTCT
66 TTGGGGGCAAAAAGGAATAGGTTTTTATTTTAGTTTACAAGTGTTTTTTATATAAATAATTTTCT
16711752 AAAGTTTTTAAATGTTTTAGATTTTTAA
131 AAAG-TTTTAAATGTTTTAGATTTTTAA
16711780 GA
1 GA
16711782 TTTTCACTTT
Statistics
Matches: 149, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
155 24 0.16
156 26 0.17
157 99 0.66
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.42
Consensus pattern (157 bp):
GAACAAAATCTCACAAACCAAGATGCATCAAGACCTTTTTGTGCCAAGAAAAATCTGGATTTTTA
TTGGGGGCAAAAAGGAATAGGTTTTTATTTTAGTTTACAAGTGTTTTTTATATAAATAATTTTCT
AAAGTTTTAAATGTTTTAGATTTTTAA
Found at i:16720598 original size:29 final size:29
Alignment explanation
Indices: 16720567--16720621 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
16720557 AAAAGCCCCT
16720567 TTTTTTAA-TAATTA-CGGATATGGGCCGG
1 TTTTTTAATTAATTACCGGA-ATGGGCCGG
*
16720595 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAATTAATTACCGGAATGGGCC
16720622 ATTTTCCGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 12 0.50
30 4 0.17
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.42
Consensus pattern (29 bp):
TTTTTTAATTAATTACCGGAATGGGCCGG
Found at i:16720626 original size:28 final size:28
Alignment explanation
Indices: 16720567--16720626 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
16720557 AAAAGCCCCT
*
16720567 TTTTTTAATAATTACGGATATGGGCCGG
1 TTTTTTAATAATTACGGATATGGGCCGA
*
16720595 TTTTTTAATTATTTACCGGA-ATGGGCC-A
1 TTTTTTAA-TAATTA-CGGATATGGGCCGA
16720623 TTTT
1 TTTT
16720627 CCGCGAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 12 0.43
29 12 0.43
30 4 0.14
ACGTcount: A:0.23, C:0.12, G:0.20, T:0.45
Consensus pattern (28 bp):
TTTTTTAATAATTACGGATATGGGCCGA
Found at i:16722319 original size:20 final size:20
Alignment explanation
Indices: 16722294--16722333 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
16722284 TTTATTCTTA
16722294 CAAAATCT-ATATAACAATTT
1 CAAAATCTGATATAA-AATTT
*
16722314 CAAAATGTGATATAAAATTT
1 CAAAATCTGATATAAAATTT
16722334 ACCTCGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (20 bp):
CAAAATCTGATATAAAATTT
Found at i:16723098 original size:14 final size:15
Alignment explanation
Indices: 16723081--16723114 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
16723071 AATAAATATC
16723081 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
16723095 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
16723110 TAAAA
1 TAAAA
16723115 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:16723327 original size:21 final size:22
Alignment explanation
Indices: 16723301--16723342 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
16723291 ATTTGGATAT
* *
16723301 TTTTTGAATGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
16723323 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
16723343 TTTGAGAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:16723350 original size:30 final size:30
Alignment explanation
Indices: 16723314--16723372 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
16723304 TTGAATGAAA
* *
16723314 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
16723344 TTGAGAGAATTTTGGAAGGAAATTGAGAG
1 TTGAGAGAATTTTGGAAGGAAATTGAGAG
16723373 AATTTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAAATTGAGAGT
Found at i:16723369 original size:22 final size:22
Alignment explanation
Indices: 16723344--16723420 Score: 129
Period size: 22 Copynumber: 3.5 Consensus size: 22
16723334 ATTTGAGAGT
*
16723344 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
*
16723366 TTGAGAGAATTTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAGGAAA
16723388 TTGAGAGAATTTTTGAA-GAAA
1 TTGAGAGAATTTTTGAAGGAAA
16723409 TTGAGAGAATTT
1 TTGAGAGAATTT
16723421 GTTTGTGAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
21 15 0.29
22 37 0.71
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (22 bp):
TTGAGAGAATTTTTGAAGGAAA
Found at i:16726778 original size:22 final size:22
Alignment explanation
Indices: 16726725--16726778 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
16726715 ATTAACTCAA
16726725 TCATAAAACATTTCAATTCACT
1 TCATAAAACATTTCAATTCACT
* ** *
16726747 TAATTCAACATTTCATTATCA-T
1 TCATAAAACATTTCAAT-TCACT
16726769 TCATAAAACA
1 TCATAAAACA
16726779 AACAATCATT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (22 bp):
TCATAAAACATTTCAATTCACT
Found at i:16732891 original size:50 final size:50
Alignment explanation
Indices: 16732602--16732890 Score: 294
Period size: 50 Copynumber: 5.8 Consensus size: 50
16732592 TAATAACATA
* * * ** * * *
16732602 CCAAAGCCATGTCCCAGACATAGTCTTACATGGGATGTTTCATGTAC--TA
1 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCT-CGGTG
* * * * * ** *
16732651 CCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTG
1 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * * ** * **
16732701 CCCATGCCATATCCCAAACATGGTCTTACGGGGGATCAATCATCTCGGTG
1 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
* *
16732751 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTG
1 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
* *
16732801 CCAACGTCATGTCCCAAACATGGTCTTACATGGGACCTCTTATCTCGGTG
1 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
*
16732851 CCAACGCCATGTCCCATACATGGTCTTACATGGGACCTCT
1 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCT
16732891 TTACCCAAAT
Statistics
Matches: 201, Mismatches: 37, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
48 1 0.00
49 36 0.18
50 164 0.82
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
Found at i:16733262 original size:30 final size:30
Alignment explanation
Indices: 16733228--16733285 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
16733218 CCTCGACTCT
16733228 AACTTTGGA-AAAATTACAATTTTGCCCCTA
1 AACTTT-GACAAAATTACAATTTTGCCCCTA
* * *
16733258 AACTTTTACACAATTACACTTTTGCCCC
1 AACTTTGACAAAATTACAATTTTGCCCC
16733286 AAAGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (30 bp):
AACTTTGACAAAATTACAATTTTGCCCCTA
Found at i:16734777 original size:23 final size:24
Alignment explanation
Indices: 16734723--16734774 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
16734713 ACAAATAAAT
* *
16734723 TACTACTAAAATAATAACCAATTA
1 TACTAATAAAATAATAACCAACTA
16734747 TACTAATAAAA-AATAACCAACTA
1 TACTAATAAAATAATAACCAACTA
16734770 -ACTAA
1 TACTAA
16734775 ATACACTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 5 0.19
23 11 0.42
24 10 0.38
ACGTcount: A:0.58, C:0.17, G:0.00, T:0.25
Consensus pattern (24 bp):
TACTAATAAAATAATAACCAACTA
Found at i:16738685 original size:16 final size:16
Alignment explanation
Indices: 16738652--16738685 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16738642 TCTATCTGTT
* *
16738652 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
16738668 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
16738684 AA
1 AA
16738686 TATAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:16743465 original size:16 final size:16
Alignment explanation
Indices: 16743432--16743465 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16743422 GGAGATTGTT
* *
16743432 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
16743448 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
16743464 AA
1 AA
16743466 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:16746064 original size:99 final size:100
Alignment explanation
Indices: 16745945--16746145 Score: 316
Period size: 99 Copynumber: 2.0 Consensus size: 100
16745935 TCTTCAAATG
16745945 TTTAATCAAAATATCTTTTATTTATATAAATAAAATAATAAATATGTAACTATATAATAAAAATA
1 TTTAATCAAAATATCTTTTATTTATATAAATAAAATAATAAATATGTAACTATATAATAAAAATA
*
16746010 TATAT-TTTATATATATCATTATGTTAAAAATATT
66 TATATATTTATATATACCATTATGTTAAAAATATT
* * * *
16746044 TTTAATTAATAAT-TCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATGAAATT
1 TTTAATCAA-AATATCTTTTATTTATATAAATAAAATAATAAATATGTAACTATATAATAAAAAT
* *
16746108 ATATATATTTATATTTACCATTATGTTAAATATATT
65 ATATATATTTATATATACCATTATGTTAAAAATATT
16746144 TT
1 TT
16746146 ATTTTTAACT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
99 62 0.67
100 31 0.33
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (100 bp):
TTTAATCAAAATATCTTTTATTTATATAAATAAAATAATAAATATGTAACTATATAATAAAAATA
TATATATTTATATATACCATTATGTTAAAAATATT
Found at i:16747096 original size:25 final size:24
Alignment explanation
Indices: 16747064--16747113 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
16747054 TGTAATTAAA
*
16747064 TAAAATTTAAAAAGTTATGTTATTTC
1 TAAATTTTAAAAA-TTAT-TTATTTC
*
16747090 TAAATTTTGAAAATTATTTATTTC
1 TAAATTTTAAAAATTATTTATTTC
16747114 CTGATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 4 0.18
26 11 0.50
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (24 bp):
TAAATTTTAAAAATTATTTATTTC
Found at i:16747558 original size:10 final size:10
Alignment explanation
Indices: 16747543--16747594 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
16747533 GGATGAGTTC
16747543 AAAATTATAA
1 AAAATTATAA
16747553 AAAATT-T-A
1 AAAATTATAA
*
16747561 GAAATTATAA
1 AAAATTATAA
16747571 AAAA-TACTAA
1 AAAATTA-TAA
*
16747581 AAAATTGTAA
1 AAAATTATAA
16747591 AAAA
1 AAAA
16747595 AAATTCAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
8 6 0.17
9 4 0.11
10 24 0.69
11 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (10 bp):
AAAATTATAA
Found at i:16748105 original size:23 final size:23
Alignment explanation
Indices: 16748079--16748125 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
16748069 TTAATTTTTG
16748079 TAAAAATTTT-AAATTAATAAAAA
1 TAAAAATTTTAAAATT-ATAAAAA
**
16748102 TAAATCTTTTAAAATTATAAAAA
1 TAAAAATTTTAAAATTATAAAAA
16748125 T
1 T
16748126 TTAATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
TAAAAATTTTAAAATTATAAAAA
Found at i:16749856 original size:31 final size:31
Alignment explanation
Indices: 16749821--16749907 Score: 80
Period size: 31 Copynumber: 3.0 Consensus size: 31
16749811 GATGTGAATT
16749821 AAATGGAAAAAGTAATTAGATATGATATTCA
1 AAATGGAAAAAGTAATTAGATATGATATTCA
* * *
16749852 AAATGAAAAAAG--A-GA-ATGTGA-ATT--
1 AAATGGAAAAAGTAATTAGATATGATATTCA
*
16749876 AAATGGAAAAATTAATTAGATATGATAATTCA
1 AAATGGAAAAAGTAATTAGATATGAT-ATTCA
16749908 TTTTCGATGT
Statistics
Matches: 41, Mismatches: 7, Indels: 15
0.65 0.11 0.24
Matches are distributed among these distances:
24 10 0.24
26 4 0.10
27 6 0.15
28 6 0.15
29 1 0.02
30 3 0.07
31 11 0.27
ACGTcount: A:0.54, C:0.02, G:0.16, T:0.28
Consensus pattern (31 bp):
AAATGGAAAAAGTAATTAGATATGATATTCA
Found at i:16751269 original size:28 final size:28
Alignment explanation
Indices: 16751238--16751296 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
16751228 ACACACCCAA
*
16751238 AATAAATAT-AAATCCTCCATAACACACC
1 AATAAATATCAAATCCTCC-CAACACACC
*
16751266 AAT--ATATCATATCCTCCCAACACACC
1 AATAAATATCAAATCCTCCCAACACACC
16751292 AATAA
1 AATAA
16751297 GGCATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
26 15 0.58
27 8 0.31
28 3 0.12
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (28 bp):
AATAAATATCAAATCCTCCCAACACACC
Found at i:16752276 original size:14 final size:14
Alignment explanation
Indices: 16752257--16752300 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
16752247 GCCTCTGTTC
16752257 TTTCTTTCTTTTTG
1 TTTCTTTCTTTTTG
16752271 TTTCTTTC-TTTTG
1 TTTCTTTCTTTTTG
*
16752284 TTTTCTTT-TATTTG
1 -TTTCTTTCTTTTTG
16752298 TTT
1 TTT
16752301 ACTAATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 8 0.30
14 19 0.70
ACGTcount: A:0.02, C:0.11, G:0.07, T:0.80
Consensus pattern (14 bp):
TTTCTTTCTTTTTG
Found at i:16752488 original size:24 final size:21
Alignment explanation
Indices: 16752461--16752508 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 21
16752451 ATATTTATAA
16752461 TATAATTAATTTAATAATATACTT
1 TATAATTAATTT-AT-ATATA-TT
16752485 TATAATTAATTTATATATATT
1 TATAATTAATTTATATATATT
16752506 TAT
1 TAT
16752509 CTAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 5 0.21
22 5 0.21
23 2 0.08
24 12 0.50
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TATAATTAATTTATATATATT
Found at i:16752499 original size:11 final size:11
Alignment explanation
Indices: 16752461--16752499 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
16752451 ATATTTATAA
16752461 TATAATTAATT
1 TATAATTAATT
*
16752472 TAATAATATACTT
1 T-ATAAT-TAATT
16752485 TATAATTAATT
1 TATAATTAATT
16752496 TATA
1 TATA
16752500 TATATTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 10 0.42
13 5 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATAATTAATT
Found at i:16758131 original size:10 final size:10
Alignment explanation
Indices: 16758116--16758164 Score: 98
Period size: 10 Copynumber: 4.9 Consensus size: 10
16758106 TTAAGCCCGA
16758116 GCCCGGCCTC
1 GCCCGGCCTC
16758126 GCCCGGCCTC
1 GCCCGGCCTC
16758136 GCCCGGCCTC
1 GCCCGGCCTC
16758146 GCCCGGCCTC
1 GCCCGGCCTC
16758156 GCCCGGCCT
1 GCCCGGCCT
16758165 ATTTTTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.00, C:0.59, G:0.31, T:0.10
Consensus pattern (10 bp):
GCCCGGCCTC
Found at i:16760790 original size:42 final size:42
Alignment explanation
Indices: 16760694--16760777 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
16760684 TGGACATACA
* * * * *
16760694 ACCATGTCCTTGCTTGTGTGGCTCACACGGCCTGGGCACACG
1 ACCATATCCTTACTCGTGTGACTCACACAGCCTGGGCACACG
*
16760736 ACCATATCCTTACTCGTGTGACTCACACAGCTTGGGCACACG
1 ACCATATCCTTACTCGTGTGACTCACACAGCCTGGGCACACG
16760778 TTCGTATGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.19, C:0.33, G:0.24, T:0.24
Consensus pattern (42 bp):
ACCATATCCTTACTCGTGTGACTCACACAGCCTGGGCACACG
Found at i:16761411 original size:31 final size:31
Alignment explanation
Indices: 16761365--16761439 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
16761355 ATCGTTAACT
* *
16761365 CAGTGAAACTCACAAAATGAGAGGAAAGTAA
1 CAGTAAAACTTACAAAATGAGAGGAAAGTAA
*
16761396 TAGTAAAACTTACAAAATGAGAGGAAAGTAA
1 CAGTAAAACTTACAAAATGAGAGGAAAGTAA
16761427 CAGTAAAACTTAC
1 CAGTAAAACTTAC
16761440 TCAATAATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (31 bp):
CAGTAAAACTTACAAAATGAGAGGAAAGTAA
Found at i:16764038 original size:20 final size:21
Alignment explanation
Indices: 16763998--16764037 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16763988 TAATAGTAGA
16763998 TTTAGAAATAAATCCTAAAAT
1 TTTAGAAATAAATCCTAAAAT
* *
16764019 TTTAGAGATAAATCGTAAA
1 TTTAGAAATAAATCCTAAA
16764038 TAAATTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (21 bp):
TTTAGAAATAAATCCTAAAAT
Found at i:16764608 original size:24 final size:24
Alignment explanation
Indices: 16764581--16764626 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
16764571 CTAATTAAAA
* * *
16764581 TTTATAAATAATTAATATTTATTG
1 TTTAAAAACAATTAAAATTTATTG
*
16764605 TTTAAAAACATTTAAAATTTAT
1 TTTAAAAACAATTAAAATTTAT
16764627 ATTTCATATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTAAAAACAATTAAAATTTATTG
Found at i:16767819 original size:21 final size:21
Alignment explanation
Indices: 16767795--16767837 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
16767785 AAAATTAGGG
* *
16767795 TTTTTTTGTATTTTTAATGAA
1 TTTTTTTATATTTTTAAAGAA
16767816 TTTTTTTATATTTTTAAAGAA
1 TTTTTTTATATTTTTAAAGAA
16767837 T
1 T
16767838 ATTGAGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (21 bp):
TTTTTTTATATTTTTAAAGAA
Found at i:16770500 original size:20 final size:20
Alignment explanation
Indices: 16770477--16770519 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
16770467 TGATTTATTA
16770477 AGTTCAACAACAATCTACAG
1 AGTTCAACAACAATCTACAG
16770497 AGTTCAACAACAATCTACAG
1 AGTTCAACAACAATCTACAG
16770517 AGT
1 AGT
16770520 AGCCTATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.21
Consensus pattern (20 bp):
AGTTCAACAACAATCTACAG
Found at i:16776795 original size:17 final size:17
Alignment explanation
Indices: 16776773--16776808 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
16776763 AAATTAATGG
16776773 GAAAAGATGGTTTGGTA
1 GAAAAGATGGTTTGGTA
16776790 GAAAAGATGGTTTGGTA
1 GAAAAGATGGTTTGGTA
16776807 GA
1 GA
16776809 TTGAGGTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (17 bp):
GAAAAGATGGTTTGGTA
Found at i:16779690 original size:22 final size:22
Alignment explanation
Indices: 16779642--16779697 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
16779632 TTTTCTATGA
* *
16779642 AAAAATATAAATTTATGGTTTG
1 AAAAATATAAATTTAAGATTTG
*
16779664 AAAAATGTAAATTTTAAGATTTG
1 AAAAATATAAA-TTTAAGATTTG
*
16779687 AAAACTATAAA
1 AAAAATATAAA
16779698 ATAATATTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (22 bp):
AAAAATATAAATTTAAGATTTG
Found at i:16780966 original size:31 final size:32
Alignment explanation
Indices: 16780931--16781004 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
16780921 TCCAATGAGC
*
16780931 TAAAATTAAATTT-AAAAACTTTTAAGGGA-GA
1 TAAAATAAAATTTGAAAAA-TTTTAAGGGATGA
* *
16780962 TAAAATAAAATTTGTAAAATTTTAGGGGATGA
1 TAAAATAAAATTTGAAAAATTTTAAGGGATGA
*
16780994 TAAGATAAAAT
1 TAAAATAAAAT
16781005 GGTGGTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 21 0.57
32 16 0.43
ACGTcount: A:0.51, C:0.01, G:0.15, T:0.32
Consensus pattern (32 bp):
TAAAATAAAATTTGAAAAATTTTAAGGGATGA
Found at i:16781301 original size:9 final size:9
Alignment explanation
Indices: 16781287--16781354 Score: 55
Period size: 9 Copynumber: 7.3 Consensus size: 9
16781277 AACTATTAAT
16781287 TTTTTTATA
1 TTTTTTATA
16781296 TTTTTTATA
1 TTTTTTATA
* *
16781305 CTTTTTAAA
1 TTTTTTATA
* *
16781314 TTTGTAATA
1 TTTTTTATA
* *
16781323 ATTTTTATGC
1 TTTTTTAT-A
*
16781333 TTTTTTCAAA
1 TTTTTT-ATA
16781343 TTTTTTATA
1 TTTTTTATA
16781352 TTT
1 TTT
16781355 AAAAAATTAA
Statistics
Matches: 43, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
9 31 0.72
10 11 0.26
11 1 0.02
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.68
Consensus pattern (9 bp):
TTTTTTATA
Found at i:16782562 original size:10 final size:11
Alignment explanation
Indices: 16782537--16782586 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
16782527 ATGAATTTTC
16782537 AAAAACATAATT
1 AAAAACAT-ATT
16782549 AAAAACAT-TT
1 AAAAACATATT
16782559 AAAAACATAGTT
1 AAAAACATA-TT
*
16782571 AATAAA-ATTTT
1 AA-AAACATATT
16782582 AAAAA
1 AAAAA
16782587 TAATTACAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 13 0.38
11 4 0.12
12 14 0.41
13 3 0.09
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (11 bp):
AAAAACATATT
Found at i:16782562 original size:22 final size:22
Alignment explanation
Indices: 16782537--16782592 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
16782527 ATGAATTTTC
16782537 AAAAACATAATTAA-AAACATTT
1 AAAAACATAATTAATAAA-ATTT
*
16782559 AAAAACATAGTTAATAAAATTT
1 AAAAACATAATTAATAAAATTT
*
16782581 TAAAA-ATAATTA
1 AAAAACATAATTA
16782593 CAATATCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.20
22 21 0.70
23 3 0.10
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.30
Consensus pattern (22 bp):
AAAAACATAATTAATAAAATTT
Found at i:16787325 original size:25 final size:25
Alignment explanation
Indices: 16787293--16787393 Score: 73
Period size: 25 Copynumber: 4.1 Consensus size: 25
16787283 GGCTCTTTGT
16787293 GAGCTTCCTGATTAATGGCTCTCCG
1 GAGCTTCCTGATTAATGGCTCTCCG
* * * **
16787318 GAGCTTCC-CAAT-ATGGCTCACTT
1 GAGCTTCCTGATTAATGGCTCTCCG
* * *
16787341 GAACTTCCCGA-TATATGGCTATCCG
1 GAGCTTCCTGATTA-ATGGCTCTCCG
** *
16787366 GAGCTTATTGATTAATGGCTCTTCG
1 GAGCTTCCTGATTAATGGCTCTCCG
16787391 GAG
1 GAG
16787394 ATACCTGTTA
Statistics
Matches: 55, Mismatches: 17, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
23 16 0.29
24 3 0.05
25 34 0.62
26 2 0.04
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTCCTGATTAATGGCTCTCCG
Found at i:16788393 original size:48 final size:48
Alignment explanation
Indices: 16788337--16788434 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
16788327 AATTTGTTTA
16788337 AATGTTAATGTAGGTGGAAGACAAGATTGGGTGAGAAATAAGGCTTGG
1 AATGTTAATGTAGGTGGAAGACAAGATTGGGTGAGAAATAAGGCTTGG
*
16788385 AATGTTAATGTAGTTGGAAGACAAGATTGGGTGAGAAATAAGGCTTGG
1 AATGTTAATGTAGGTGGAAGACAAGATTGGGTGAGAAATAAGGCTTGG
16788433 AA
1 AA
16788435 ATGACCTTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.37, C:0.04, G:0.34, T:0.26
Consensus pattern (48 bp):
AATGTTAATGTAGGTGGAAGACAAGATTGGGTGAGAAATAAGGCTTGG
Found at i:16796195 original size:63 final size:63
Alignment explanation
Indices: 16796087--16796250 Score: 159
Period size: 63 Copynumber: 2.6 Consensus size: 63
16796077 TTATGGCTCG
* * * * * * * * *
16796087 TGTGACACTAATTCACAAACAGTGAGTTACACGGCTTAGAGACATG-TCTGTGTCCTTATCCCA
1 TGTGACCCTAAATCATAAACAGTGAGTTACACGACCTGGACACATGCTC-GTGTCCCTAGCCCA
* * * **
16796150 TGTGAGCCTAAATCATAAACACTGAGTTACACGACCTGGACACATGCTCGTGTCCCTGGCCTG
1 TGTGACCCTAAATCATAAACAGTGAGTTACACGACCTGGACACATGCTCGTGTCCCTAGCCCA
* * *
16796213 TGTTACCCTAAATCATAAAAAGTGTGTTACACGACCTG
1 TGTGACCCTAAATCATAAACAGTGAGTTACACGACCTG
16796251 TCATACGGTC
Statistics
Matches: 81, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
63 79 0.98
64 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (63 bp):
TGTGACCCTAAATCATAAACAGTGAGTTACACGACCTGGACACATGCTCGTGTCCCTAGCCCA
Found at i:16798169 original size:15 final size:15
Alignment explanation
Indices: 16798122--16798169 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
16798112 TTTTTCTTAA
*
16798122 ATTATATTTTAAGATT
1 ATTA-ATTTTAATATT
*
16798138 AATAA-TTTAATATTT
1 ATTAATTTTAATA-TT
16798153 ATTAATTTTAATATT
1 ATTAATTTTAATATT
16798168 AT
1 AT
16798170 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.22
15 11 0.41
16 10 0.37
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (15 bp):
ATTAATTTTAATATT
Found at i:16798183 original size:30 final size:31
Alignment explanation
Indices: 16798122--16798183 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
16798112 TTTTTCTTAA
* *
16798122 ATTATATTTTAAGATTAATAATTTAATATTT
1 ATTATATTTTAAGATTAATAAATTAAAATTT
*
16798153 ATTA-ATTTTAATATT-ATAAAATTAAAATTT
1 ATTATATTTTAAGATTAAT-AAATTAAAATTT
16798183 A
1 A
16798184 ATTCAAGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 2 0.07
30 21 0.78
31 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
ATTATATTTTAAGATTAATAAATTAAAATTT
Found at i:16798306 original size:67 final size:69
Alignment explanation
Indices: 16798196--16798335 Score: 248
Period size: 67 Copynumber: 2.1 Consensus size: 69
16798186 TCAAGTAAGT
*
16798196 AAAATATTAAAATAAAAACATAATTTATTTAAAATCGAGTTAATATTTAACATATAAAAAATTAT
1 AAAATATTAAAATAAAAACATAATTTATTTAAAATCGAATTAATATTTAACATATAAAAAATTAT
16798261 AAA-
66 AAAG
*
16798264 AAAATATTAAAATAAAAA-ATAATTTATTTAAAATCGAATTAATATTTAACATATAAAAAGTTAT
1 AAAATATTAAAATAAAAACATAATTTATTTAAAATCGAATTAATATTTAACATATAAAAAATTAT
16798328 AAAG
66 AAAG
16798332 AAAA
1 AAAA
16798336 AATTCAGACA
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
67 47 0.68
68 22 0.32
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (69 bp):
AAAATATTAAAATAAAAACATAATTTATTTAAAATCGAATTAATATTTAACATATAAAAAATTAT
AAAG
Found at i:16799789 original size:14 final size:14
Alignment explanation
Indices: 16799770--16799806 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
16799760 ATTAAAATTC
16799770 ATAATATTTTTATA
1 ATAATATTTTTATA
16799784 ATAATATTTTT-TA
1 ATAATATTTTTATA
16799797 A-AAT-TTTTTA
1 ATAATATTTTTA
16799807 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 5 0.23
12 3 0.14
13 3 0.14
14 11 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATAATATTTTTATA
Found at i:16799812 original size:12 final size:13
Alignment explanation
Indices: 16799770--16799819 Score: 63
Period size: 12 Copynumber: 4.1 Consensus size: 13
16799760 ATTAAAATTC
16799770 ATAATATTTTTATA
1 ATAATATTTTT-TA
16799784 ATAATATTTTTT-
1 ATAATATTTTTTA
16799796 A-AA-ATTTTTTA
1 ATAATATTTTTTA
16799807 ATAA-ATTTTTTA
1 ATAATATTTTTTA
16799819 A
1 A
16799820 AAACTCGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 7 0.21
11 3 0.09
12 12 0.35
13 1 0.03
14 11 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
ATAATATTTTTTA
Found at i:16799822 original size:23 final size:22
Alignment explanation
Indices: 16799775--16799821 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 22
16799765 AATTCATAAT
16799775 ATTTTTATAATAATATTTTTTAAA
1 ATTTTT-TAATAA-ATTTTTTAAA
16799799 ATTTTTTAATAAATTTTTTAAA
1 ATTTTTTAATAAATTTTTTAAA
16799821 A
1 A
16799822 ACTCGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.48
23 6 0.26
24 6 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTTTAATAAATTTTTTAAA
Found at i:16799830 original size:23 final size:22
Alignment explanation
Indices: 16799782--16799836 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
16799772 AATATTTTTA
* **
16799782 TAATAATATTTTTTAAAATTTTT
1 TAATAA-ATTTTTTAAAACTCGT
16799805 TAATAAATTTTTTAAAAACTCGT
1 TAATAAATTTTTT-AAAACTCGT
16799828 TAATAAATT
1 TAATAAATT
16799837 GAAAAAGGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
TAATAAATTTTTTAAAACTCGT
Found at i:16799926 original size:15 final size:15
Alignment explanation
Indices: 16799869--16799937 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 15
16799859 ATACTTTTAG
16799869 AAATATTTAACTAATTTA
1 AAATATTTAA-T-A-TTA
*
16799887 AAATCAGTT-ATATTA
1 AAAT-ATTTAATATTA
*
16799902 ATATTATTTAACT-TTA
1 A-AATATTTAA-TATTA
16799918 AAATATTTAATATTA
1 AAATATTTAATATTA
16799933 AAATA
1 AAATA
16799938 ATACAAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
14 1 0.02
15 23 0.55
16 8 0.19
17 2 0.05
18 5 0.12
19 3 0.07
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (15 bp):
AAATATTTAATATTA
Found at i:16800472 original size:19 final size:19
Alignment explanation
Indices: 16800448--16800489 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
16800438 CCTAATTAGA
16800448 ATTTCTCTTCTCTCTCCAT
1 ATTTCTCTTCTCTCTCCAT
*
16800467 A-TT-TCTTCTCTCTCTAT
1 ATTTCTCTTCTCTCTCCAT
16800484 ATTTCT
1 ATTTCT
16800490 TCTCATACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 14 0.70
18 4 0.20
19 2 0.10
ACGTcount: A:0.12, C:0.31, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTCTCTTCTCTCTCCAT
Found at i:16800478 original size:15 final size:17
Alignment explanation
Indices: 16800453--16800493 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
16800443 TTAGAATTTC
*
16800453 TCTTCTCTCTCCATATT
1 TCTTCTCTCTCTATATT
16800470 TCTTCTCTCTCTATATT
1 TCTTCTCTCTCTATATT
16800487 TCTTCTC
1 TCTTCTC
16800494 ATACTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.10, C:0.34, G:0.00, T:0.56
Consensus pattern (17 bp):
TCTTCTCTCTCTATATT
Found at i:16803256 original size:30 final size:30
Alignment explanation
Indices: 16803220--16803277 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
16803210 ATTCAAAAGA
16803220 ATAAAAATGTTTTATTTTCCAAATATAAGG
1 ATAAAAATGTTTTATTTTCCAAATATAAGG
16803250 ATAAAAATGTTTTATTTTCCAAATATAA
1 ATAAAAATGTTTTATTTTCCAAATATAA
16803278 TGAATCGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (30 bp):
ATAAAAATGTTTTATTTTCCAAATATAAGG
Found at i:16816444 original size:44 final size:44
Alignment explanation
Indices: 16816395--16816481 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
16816385 GGGGCATGTC
* *
16816395 TGTTTTCATAGACTCCCTTGAGTGCACCATTGTGGAGGCCAATT
1 TGTTTTCATAAACTCCCTTGAGTGCACCATTGTAGAGGCCAATT
* * *
16816439 TGTTTTCATAAACTCCCTTGTGTGCACCCTTGTAGAGGTCAAT
1 TGTTTTCATAAACTCCCTTGAGTGCACCATTGTAGAGGCCAAT
16816482 CGCAACAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (44 bp):
TGTTTTCATAAACTCCCTTGAGTGCACCATTGTAGAGGCCAATT
Found at i:16820725 original size:18 final size:18
Alignment explanation
Indices: 16820668--16820725 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
16820658 CTAGATCAAA
16820668 AAATTGTAAAAATATTA-
1 AAATTGTAAAAATATTAT
*
16820685 AATATTGTTAAAAATATTTT
1 AA-ATTG-TAAAAATATTAT
16820705 AAAGTTGTAAAAA-ATTAT
1 AAA-TTGTAAAAATATTAT
16820723 AAA
1 AAA
16820726 ACATTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
17 2 0.06
18 11 0.31
19 17 0.49
20 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (18 bp):
AAATTGTAAAAATATTAT
Found at i:16820731 original size:10 final size:10
Alignment explanation
Indices: 16820712--16820835 Score: 61
Period size: 10 Copynumber: 11.9 Consensus size: 10
16820702 TTTAAAGTTG
16820712 TAAAAAATTA
1 TAAAAAATTA
*
16820722 TAAAACATTA
1 TAAAAAATTA
** * *
16820732 TTTATAATTT
1 TAAAAAATTA
*
16820742 TTAAAAATTA
1 TAAAAAATTA
*
16820752 TTAAAAATTA
1 TAAAAAATTA
* *
16820762 GAAAAAAAATA
1 -TAAAAAATTA
16820773 TTAAAAAACTT-
1 -TAAAAAA-TTA
*
16820784 TCAAATAATTA
1 T-AAAAAATTA
*
16820795 TTAAAAAATTG
1 -TAAAAAATTA
**
16820806 TAAGTAATTA
1 TAAAAAATTA
*
16820816 TTAAAAAATTT
1 -TAAAAAATTA
16820827 TAAAAAATT
1 TAAAAAATT
16820836 TATTTAAAAA
Statistics
Matches: 84, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
10 50 0.60
11 32 0.38
12 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:16820796 original size:22 final size:20
Alignment explanation
Indices: 16820741--16820847 Score: 83
Period size: 22 Copynumber: 5.1 Consensus size: 20
16820731 ATTTATAATT
16820741 TTTAAA-AATTATT-AAAAA
1 TTTAAATAATTATTAAAAAA
* * *
16820759 TTAGAAAAAAAATATTAAAAAA
1 TT--TAAATAATTATTAAAAAA
16820781 CTTTCAAATAATTATTAAAAAA
1 -TTT-AAATAATTATTAAAAAA
*
16820803 TTGTAAGTAATTATTAAAAAA
1 TT-TAAATAATTATTAAAAAA
* *
16820824 TTTTAAAAAATTTATTTAAAAA
1 -TTTAAATAA-TTATTAAAAAA
16820846 TT
1 TT
16820848 GTGAATCGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
18 2 0.03
20 3 0.04
21 31 0.44
22 33 0.46
23 2 0.03
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (20 bp):
TTTAAATAATTATTAAAAAA
Found at i:16820813 original size:21 final size:21
Alignment explanation
Indices: 16820712--16820849 Score: 95
Period size: 21 Copynumber: 6.5 Consensus size: 21
16820702 TTTAAAGTTG
*
16820712 TAAAAAATTATAAA-ACATTAT
1 TAAAAAATTGTAAATA-ATTAT
* * * *
16820733 TTATAATTTTTAAA-AATTAT
1 TAAAAAATTGTAAATAATTAT
* * *
16820753 T-AAAAATTAGAAAAAAAATAT
1 TAAAAAATT-GTAAATAATTAT
16820774 TAAAAAACTT-TCAAATAATTAT
1 TAAAAAA-TTGT-AAATAATTAT
*
16820796 TAAAAAATTGTAAGTAATTAT
1 TAAAAAATTGTAAATAATTAT
* *
16820817 TAAAAAATTTTAAAAAATTTAT
1 TAAAAAATTGTAAATAA-TTAT
*
16820839 TTAAAAATTGT
1 TAAAAAATTGT
16820850 GAATCGGTGG
Statistics
Matches: 92, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
19 5 0.05
20 9 0.10
21 42 0.46
22 34 0.37
23 2 0.02
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (21 bp):
TAAAAAATTGTAAATAATTAT
Found at i:16820836 original size:10 final size:10
Alignment explanation
Indices: 16820765--16820836 Score: 63
Period size: 10 Copynumber: 6.9 Consensus size: 10
16820755 AAAATTAGAA
*
16820765 AAAAAATATT
1 AAAAAATTTT
*
16820775 AAAAAACTTTC
1 AAAAAA-TTTT
*
16820786 AAATAATTATT
1 AAAAAATT-TT
*
16820797 AAAAAATTGT
1 AAAAAATTTT
**
16820807 AAGTAATTATT
1 AAAAAATT-TT
16820818 AAAAAATTTT
1 AAAAAATTTT
16820828 AAAAAATTT
1 AAAAAATTT
16820837 ATTTAAAAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
10 26 0.54
11 22 0.46
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:16821863 original size:20 final size:19
Alignment explanation
Indices: 16821838--16821876 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
16821828 TCGGCCCGAT
*
16821838 TTTTAATAAACACAAAAATA
1 TTTTAA-AAACAAAAAAATA
*
16821858 TTTTAAAAATAAAAAAATA
1 TTTTAAAAACAAAAAAATA
16821877 AAAAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
TTTTAAAAACAAAAAAATA
Found at i:16823119 original size:12 final size:12
Alignment explanation
Indices: 16823098--16823144 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
16823088 CCCAGGCCCA
*
16823098 CAAACCAAAAAT
1 CAAACAAAAAAT
16823110 CAAACAAAAAAT
1 CAAACAAAAAAT
*
16823122 -AATACAAAAAAA
1 CAA-ACAAAAAAT
16823134 CAAAACAAAAA
1 C-AAACAAAAA
16823145 CCATAGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 2 0.07
12 19 0.63
13 7 0.23
14 2 0.07
ACGTcount: A:0.77, C:0.17, G:0.00, T:0.06
Consensus pattern (12 bp):
CAAACAAAAAAT
Found at i:16824430 original size:19 final size:17
Alignment explanation
Indices: 16824406--16824449 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 17
16824396 ATAGTCCTTG
16824406 TTATTATCATTATTTTTA
1 TTATTAT-ATTATTTTTA
16824424 TTTATTAATATTATTTTTA
1 -TTATT-ATATTATTTTTA
16824443 TTATTAT
1 TTATTAT
16824450 TGTCAATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.08
18 5 0.21
19 15 0.62
20 2 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATTATATTATTTTTA
Found at i:16824645 original size:3 final size:3
Alignment explanation
Indices: 16824637--16824684 Score: 78
Period size: 3 Copynumber: 15.3 Consensus size: 3
16824627 CATTACATTT
16824637 TTA TTA TTA TTTA TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16824684 T
1 T
16824685 AAATCTGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 37 0.86
4 6 0.14
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16830301 original size:25 final size:25
Alignment explanation
Indices: 16830267--16830316 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
16830257 TTTTGCTTAT
16830267 CGTTAATGATATAGGCTTATTACAC
1 CGTTAATGATATAGGCTTATTACAC
16830292 CGTTAATGATATAGGCTTATTACAC
1 CGTTAATGATATAGGCTTATTACAC
16830317 GAAACTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (25 bp):
CGTTAATGATATAGGCTTATTACAC
Found at i:16835010 original size:7 final size:7
Alignment explanation
Indices: 16834998--16835025 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
16834988 GGCTTAAAAG
16834998 TTGCTAT
1 TTGCTAT
16835005 TTGCTAT
1 TTGCTAT
16835012 TTGCTAT
1 TTGCTAT
16835019 TTGCTAT
1 TTGCTAT
16835026 AAGGTGATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (7 bp):
TTGCTAT
Found at i:16843624 original size:34 final size:34
Alignment explanation
Indices: 16843580--16843655 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
16843570 CATTGAATTT
* * *
16843580 TGCTTTTAACAGA-ACAATACGGTAGCAACCAATA
1 TGCTTATAACA-ACACAATACAGTAGCAAACAATA
* * *
16843614 TGCTTATAACAACTCAATATAGTAGCAAATAATA
1 TGCTTATAACAACACAATACAGTAGCAAACAATA
16843648 TGCTTATA
1 TGCTTATA
16843656 GCATATCAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 1 0.03
34 34 0.97
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (34 bp):
TGCTTATAACAACACAATACAGTAGCAAACAATA
Found at i:16843671 original size:34 final size:34
Alignment explanation
Indices: 16843601--16843677 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
16843591 GAACAATACG
**
16843601 GTAGCAACCAATATGCTTATAACAACTCAATATA
1 GTAGCAAATAATATGCTTATAACAACTCAATATA
*
16843635 GTAGCAAATAATATGCTTATAGCATA-TCAACT-TA
1 GTAGCAAATAATATGCTTATAACA-ACTCAA-TATA
16843669 GTAGCAAAT
1 GTAGCAAAT
16843678 TGTCATGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 36 0.95
35 2 0.05
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29
Consensus pattern (34 bp):
GTAGCAAATAATATGCTTATAACAACTCAATATA
Found at i:16843999 original size:25 final size:27
Alignment explanation
Indices: 16843969--16844018 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
16843959 ACAAAATTGT
16843969 AAAATTTG-AAAATAGGGG-AAAATGA
1 AAAATTTGAAAAATAGGGGTAAAATGA
16843994 AAAATTTGAAAAATAGGGGTAAAAT
1 AAAATTTGAAAAATAGGGGTAAAAT
16844019 TTTAAAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 8 0.35
26 10 0.43
27 5 0.22
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (27 bp):
AAAATTTGAAAAATAGGGGTAAAATGA
Found at i:16844046 original size:30 final size:29
Alignment explanation
Indices: 16844002--16844093 Score: 105
Period size: 29 Copynumber: 3.1 Consensus size: 29
16843992 GAAAAATTTG
*
16844002 AAAAATAGGGGTAAAATTTTAAAATCTAA
1 AAAAATAAGGGTAAAATTTTAAAATCTAA
*
16844031 AAAAACTAAGGGTAAAATTTGTAAAAT-TTA
1 AAAAA-TAAGGGTAAAATTT-TAAAATCTAA
* * * *
16844061 AAAAATATGGGAAAAACTGTAAAATCTAA
1 AAAAATAAGGGTAAAATTTTAAAATCTAA
16844090 AAAA
1 AAAA
16844094 TATGGGACAT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
28 6 0.11
29 21 0.40
30 20 0.38
31 6 0.11
ACGTcount: A:0.58, C:0.04, G:0.13, T:0.25
Consensus pattern (29 bp):
AAAAATAAGGGTAAAATTTTAAAATCTAA
Found at i:16844096 original size:28 final size:28
Alignment explanation
Indices: 16844021--16844100 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
16844011 GGTAAAATTT
* **
16844021 TAAAATCTAAAAAAACTAAGGGTAAAATTTG
1 TAAAATCT-AAAAAA-TATGGG-AAAAACTG
*
16844052 TAAAATTTAAAAAATATGGGAAAAACTG
1 TAAAATCTAAAAAATATGGGAAAAACTG
16844080 TAAAATCTAAAAAATATGGGA
1 TAAAATCTAAAAAATATGGGA
16844101 CATACAATCG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 26 0.59
29 5 0.11
30 6 0.14
31 7 0.16
ACGTcount: A:0.56, C:0.05, G:0.14, T:0.25
Consensus pattern (28 bp):
TAAAATCTAAAAAATATGGGAAAAACTG
Found at i:16845435 original size:23 final size:23
Alignment explanation
Indices: 16845409--16845453 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
16845399 GCTTATACAT
16845409 TTATTCAA-TTTATTATTATTAAA
1 TTATTCAACTTTA-TATTATTAAA
* *
16845432 TTATTTAACTTTATATTTTTAA
1 TTATTCAACTTTATATTATTAA
16845454 CACATTCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TTATTCAACTTTATATTATTAAA
Found at i:16849761 original size:67 final size:67
Alignment explanation
Indices: 16849610--16850040 Score: 349
Period size: 67 Copynumber: 6.5 Consensus size: 67
16849600 GGGCTCCCCC
** * * * * * *
16849610 ATAGTCGAGCTATGGTCTTACACACCACACCCAATGCTTAATGTCCTGGC-AACTTTTTATGTTG
1 ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCTGACGGACTCTCTATGTTG
*
16849674 CC
66 CA
* * * * * *
16849676 ATAGCCGAGCTATAGTCTTACACAATATACCCTATGTTTAATGTCCTGACGGACTTTCTATGTTG
1 ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCTGACGGACTCTCTATGTTG
16849741 CA
66 CA
* * * * * *
16849743 ATGGTCAAGCTATCGTCTTACATAATATACCCCATG--T--T-TCCTGACAGACTCTCTATGTTG
1 ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCTGACGGACTCTCTATGTTG
16849803 TC-
66 -CA
* * * * ** *
16849805 ATATTCGAGTTATGGTCTTACACATTTTGCCCCATGCTTAATGTTTTGGA-AGACTCTCTATGTT
1 ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCT-GACGGACTCTCTATGTT
* *
16849869 TCT
65 GCA
* * *
16849872 ATAGTTGAGCTATGGTCTTACACATTTTACCCCATGCTTAATGTCCTAACGGACTCTCTATGTTG
1 ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCTGACGGACTCTCTATGTTG
*
16849937 CC
66 CA
* * * * * * * * * *
16849939 ATAGTTGAGCTATGATCTTACACATTTTACCCAATGTTTAATGTCTTGACGGGCTTTTTATGTTT
1 ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCTGACGGACTCTCTATGTTG
*
16850004 CC
66 CA
* *
16850006 ATAGTTGAGCCATGGTCTTACACACTT-TACCCCAT
1 ATAGTCGAGCTATGGTCTTACACA-TTATACCCCAT
16850041 TATAGACCAT
Statistics
Matches: 301, Mismatches: 53, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
62 47 0.16
63 2 0.01
64 1 0.00
65 1 0.00
66 45 0.15
67 201 0.67
68 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (67 bp):
ATAGTCGAGCTATGGTCTTACACATTATACCCCATGCTTAATGTCCTGACGGACTCTCTATGTTG
CA
Found at i:16849980 original size:134 final size:133
Alignment explanation
Indices: 16849610--16850040 Score: 410
Period size: 134 Copynumber: 3.3 Consensus size: 133
16849600 GGGCTCCCCC
* * * * * * *
16849610 ATAGTCGAGCTATGGTCTTACACACCACACCCAATGCTTAATGTCCTGGCAACTTTTTATGTTGC
1 ATAGTCGAGCTATGGTCTTACACACTATACCCCATGCTTAATGTCCTGACGACTCTCTATGTTGC
** * * * *
16849675 CATAGCCGAGCTAT-AGTCTTACACAATATACCCTATGTTTAATGTCCTGACGGACTTTCTATGT
66 CATAGTTGAGCTATGA-TCTTACACATTTTACCCAATGTTTAATGTCTTGACGGACTTTCTATGT
*
16849739 TGCA
130 TTCA
* * * * *
16849743 ATGGTCAAGCTATCGTCTTACATAATATACCCCATG--T--T-TCCTGACAGACTCTCTATGTTG
1 ATAGTCGAGCTATGGTCTTACACACTATACCCCATGCTTAATGTCCTGAC-GACTCTCTATGTTG
* * * * * * * * *
16849803 TCATA-TTCGAGTTATGGTCTTACACATTTTGCCCCATGCTTAATGTTTTGGA-AGACTCTCTAT
65 CCATAGTT-GAGCTATGATCTTACACATTTTACCCAATGTTTAATGTCTT-GACGGACTTTCTAT
*
16849866 GTTTCT
128 GTTTCA
* * * *
16849872 ATAGTTGAGCTATGGTCTTACACATTTTACCCCATGCTTAATGTCCTAACGGACTCTCTATGTTG
1 ATAGTCGAGCTATGGTCTTACACACTATACCCCATGCTTAATGTCCTGAC-GACTCTCTATGTTG
* *
16849937 CCATAGTTGAGCTATGATCTTACACATTTTACCCAATGTTTAATGTCTTGACGGGCTTTTTATGT
65 CCATAGTTGAGCTATGATCTTACACATTTTACCCAATGTTTAATGTCTTGACGGACTTTCTATGT
*
16850002 TTCC
130 TTCA
* * *
16850006 ATAGTTGAGCCATGGTCTTACACACTTTACCCCAT
1 ATAGTCGAGCTATGGTCTTACACACTATACCCCAT
16850041 TATAGACCAT
Statistics
Matches: 236, Mismatches: 51, Indels: 21
0.77 0.17 0.07
Matches are distributed among these distances:
128 6 0.03
129 89 0.38
130 2 0.01
131 2 0.01
133 31 0.13
134 104 0.44
135 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (133 bp):
ATAGTCGAGCTATGGTCTTACACACTATACCCCATGCTTAATGTCCTGACGACTCTCTATGTTGC
CATAGTTGAGCTATGATCTTACACATTTTACCCAATGTTTAATGTCTTGACGGACTTTCTATGTT
TCA
Found at i:16855303 original size:50 final size:50
Alignment explanation
Indices: 16855175--16855420 Score: 276
Period size: 50 Copynumber: 4.8 Consensus size: 50
16855165 ATTTGGGTAA
* * * *
16855175 AGAGATCCCATGTAGGACAATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
16855231 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
16855281 AGAGGTCCCATGTAAGATCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
16855331 AGAGGTCCCCCGTAAGACCATGTCTGTGACATGGCATGGGCACTGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
16855381 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
16855421 TAGTACAAGA
Statistics
Matches: 166, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 124 0.75
53 3 0.02
55 1 0.01
56 38 0.23
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:16855456 original size:49 final size:50
Alignment explanation
Indices: 16855180--16855471 Score: 201
Period size: 50 Copynumber: 5.7 Consensus size: 50
16855170 GGTAAAGAGA
* * * * **
16855180 TCCCATGTAGGACAATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-C--TGACA--A-GAGAAC
* * * * * **
16855236 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACTGACAAGAGAAC
* * * * * * * **
16855286 TCCCATGTAAGATCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACTGACAAGAGAAC
** * * * * *
16855336 TCCCCCGTAAGACCATGTCTGTGACATGGCATGGGCACTGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACTGACAAGAGAAC
* * *
16855386 TCCCATGTAAGACCATATCTGGGATATGGCATTGGTAGT-ACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACTGACAAGAGAAC
* *
16855434 ATCCCATGTAAGACCATGTCTGGTATATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA
16855472 TGTTATTATC
Statistics
Matches: 203, Mismatches: 32, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.01
49 37 0.18
50 124 0.61
53 4 0.02
55 1 0.00
56 34 0.17
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACTGACAAGAGAAC
Found at i:16860551 original size:104 final size:104
Alignment explanation
Indices: 16860371--16860594 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
16860361 TGTATATAAA
** * *
16860371 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
16860436 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
16860475 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
16860539 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
16860579 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
16860595 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:16860646 original size:71 final size:72
Alignment explanation
Indices: 16860513--16860664 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
16860503 TCATTGGTGG
* *
16860513 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
16860578 GAGGGGT
66 GAGGGGT
***
16860585 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
16860649 GAGGGGT
66 GAGGGGT
16860656 TGCTAAGTG
1 TGCTAAGTG
16860665 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:16868310 original size:24 final size:24
Alignment explanation
Indices: 16868283--16868369 Score: 122
Period size: 24 Copynumber: 3.7 Consensus size: 24
16868273 CATTATTGGG
*
16868283 AAAGGATGAATTGATGGAAAATGT
1 AAAGGATGAATTGACGGAAAATGT
* * *
16868307 AAAGGAGGAACTGACAGAAAATGT
1 AAAGGATGAATTGACGGAAAATGT
*
16868331 AAAGGATGAATTGACGG-TAATGT
1 AAAGGATGAATTGACGGAAAATGT
16868354 AAAGGATGAATTGACG
1 AAAGGATGAATTGACG
16868370 ACAAATTATT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 21 0.38
24 34 0.62
ACGTcount: A:0.45, C:0.05, G:0.30, T:0.21
Consensus pattern (24 bp):
AAAGGATGAATTGACGGAAAATGT
Found at i:16871549 original size:24 final size:24
Alignment explanation
Indices: 16871521--16871573 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
16871511 CGGTGCTTTT
*
16871521 CGTTAATTGCCCTTCGGAGCTACC
1 CGTTAATTACCCTTCGGAGCTACC
* *
16871545 CGTTAATTACTCTTTGGAGCTACC
1 CGTTAATTACCCTTCGGAGCTACC
16871569 CGTTA
1 CGTTA
16871574 TAGGCTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (24 bp):
CGTTAATTACCCTTCGGAGCTACC
Found at i:16871595 original size:25 final size:24
Alignment explanation
Indices: 16871536--16871600 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
16871526 ATTGCCCTTC
16871536 GGAGCTACCCGTTAATTA--CTCTTT
1 GGAGCTACCCGTT-A-TAGGCTCTTT
16871560 GGAGCTACCCGTTATAGGCTCTTT
1 GGAGCTACCCGTTATAGGCTCTTT
*
16871584 GTGAGCTTCCCGTTATA
1 G-GAGCTACCCGTTATA
16871601 TTACCTGAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 2 0.05
23 1 0.03
24 20 0.54
25 14 0.38
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (24 bp):
GGAGCTACCCGTTATAGGCTCTTT
Found at i:16879897 original size:33 final size:35
Alignment explanation
Indices: 16879854--16879928 Score: 102
Period size: 33 Copynumber: 2.2 Consensus size: 35
16879844 AAATCATTTG
16879854 AAAATGAATGTAGGTTTC-C-AAAAATGGAAATGA
1 AAAATGAATGTAGGTTTCTCAAAAAATGGAAATGA
* *
16879887 AAAATTAATGTGGGTTTCTCAAAAAATGGAAATG-
1 AAAATGAATGTAGGTTTCTCAAAAAATGGAAATGA
*
16879921 GAAATGAA
1 AAAATGAA
16879929 AATAAGAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 16 0.44
34 7 0.19
35 13 0.36
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.25
Consensus pattern (35 bp):
AAAATGAATGTAGGTTTCTCAAAAAATGGAAATGA
Found at i:16881158 original size:25 final size:25
Alignment explanation
Indices: 16881097--16881162 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
16881087 AGCATTATTG
16881097 GGTTGCTAACACTAGCTTCGAATTAA
1 GGTTGCTAACACTAGCTTC-AATTAA
* *
16881123 GGTTGCTAACACTAGCTT-AGTTCGA
1 GGTTGCTAACACTAGCTTCAATT-AA
*
16881148 TGTTGCTAACACTAG
1 GGTTGCTAACACTAG
16881163 TTAAGAGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.08
25 15 0.42
26 18 0.50
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (25 bp):
GGTTGCTAACACTAGCTTCAATTAA
Found at i:16882147 original size:40 final size:40
Alignment explanation
Indices: 16882100--16882184 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
16882090 CTACAACCTT
*
16882100 ATATTATCTATAATTATAGAAAATTCATGTAAATTTCAAA
1 ATATTATCTATAATTACAGAAAATTCATGTAAATTTCAAA
16882140 ATATTATCTATAATTACAGAAAATTCATGTAAATTTCAAA
1 ATATTATCTATAATTACAGAAAATTCATGTAAATTTCAAA
16882180 ATATT
1 ATATT
16882185 TATACTTGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (40 bp):
ATATTATCTATAATTACAGAAAATTCATGTAAATTTCAAA
Found at i:16884710 original size:55 final size:58
Alignment explanation
Indices: 16884651--16884759 Score: 145
Period size: 57 Copynumber: 1.9 Consensus size: 58
16884641 ATTCCGTGTA
* * *
16884651 CATTTCTAAATGAATT-CA-TTTCTC-ATTTTCATTTCCATTT-TGAGAAAACCACATT
1 CATTTCCAAATG-ATTCCATTTTCTCTATTTTCATTTCAATTTAGGAGAAAACCACATT
*
16884706 CATTTCCAAATGATTCCATTTTCTCTATTTTCATTTTAATTTAGGAGAAAACCA
1 CATTTCCAAATGATTCCATTTTCTCTATTTTCATTTCAATTTAGGAGAAAACCA
16884760 TAATAATTTC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
54 3 0.07
55 13 0.28
56 6 0.13
57 14 0.30
58 10 0.22
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.43
Consensus pattern (58 bp):
CATTTCCAAATGATTCCATTTTCTCTATTTTCATTTCAATTTAGGAGAAAACCACATT
Found at i:16884769 original size:58 final size:55
Alignment explanation
Indices: 16884652--16884770 Score: 132
Period size: 58 Copynumber: 2.1 Consensus size: 55
16884642 TTCCGTGTAC
* * * * *
16884652 ATTTCTAAATGAATTCATTTCTCATTTTCATTTCCATTTTGAGAAAACCACATTC
1 ATTTCCAAATGAATTCATTTCTCATTTTCATTTCAATTTGGAGAAAACCACAATA
* *
16884707 ATTTCCAAATG-ATTCCATTTTCTCTATTTTCATTTTAATTTAGGAGAAAACCATAATA
1 ATTTCCAAATGAATT-CA-TTTCTC-ATTTTCATTTCAATTT-GGAGAAAACCACAATA
16884765 ATTTCC
1 ATTTCC
16884771 TGAATATTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
54 3 0.06
55 12 0.23
56 6 0.11
57 14 0.26
58 18 0.34
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (55 bp):
ATTTCCAAATGAATTCATTTCTCATTTTCATTTCAATTTGGAGAAAACCACAATA
Found at i:16890564 original size:16 final size:16
Alignment explanation
Indices: 16890543--16890689 Score: 99
Period size: 18 Copynumber: 9.1 Consensus size: 16
16890533 TTCCCTCATT
16890543 TTTTAATTATTATAAC
1 TTTTAATTATTATAAC
* *
16890559 TTTTAAGAATATTAGAAC
1 TTTT-A-ATTATTATAAC
**
16890577 TTTTGCTTA-T-TAAC
1 TTTTAATTATTATAAC
16890591 TTTTAATTATTATAAC
1 TTTTAATTATTATAAC
*
16890607 TCTTT--TTACTTATTAATT
1 T-TTTAATTA-TTA-TAA-C
16890625 TTTTAATTATTATAAC
1 TTTTAATTATTATAAC
* *
16890641 TTTTAAGAATATTAGAAC
1 TTTT-A-ATTATTATAAC
**
16890659 TTTTGCTTA-T-TAAC
1 TTTTAATTATTATAAC
16890673 TTTTAATTATTATAAC
1 TTTTAATTATTATAAC
16890689 T
1 T
16890690 CTTTTTACTT
Statistics
Matches: 99, Mismatches: 18, Indels: 28
0.68 0.12 0.19
Matches are distributed among these distances:
14 20 0.20
15 7 0.07
16 25 0.25
17 14 0.14
18 30 0.30
19 3 0.03
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (16 bp):
TTTTAATTATTATAAC
Found at i:16890619 original size:19 final size:18
Alignment explanation
Indices: 16890591--16890644 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 18
16890581 GCTTATTAAC
16890591 TTTTAATTATTATAACTCT
1 TTTTAATTATTATAACT-T
*
16890610 TTTTACTTA-T-TAA-TT
1 TTTTAATTATTATAACTT
16890625 TTTTAATTATTATAACTT
1 TTTTAATTATTATAACTT
16890643 TT
1 TT
16890645 AAGAATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 9 0.30
16 2 0.07
17 6 0.20
18 5 0.17
19 8 0.27
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTAATTATTATAACTT
Found at i:16890632 original size:34 final size:33
Alignment explanation
Indices: 16890577--16890641 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
16890567 ATATTAGAAC
*
16890577 TTTTGCTTATTAACTTTTAATTATTATAACTCT
1 TTTTACTTATTAACTTTTAATTATTATAACTCT
*
16890610 TTTTACTTATTAATTTTTTAATTATTATAACT
1 TTTTACTTATTAA-CTTTTAATTATTATAACT
16890642 TTTAAGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (33 bp):
TTTTACTTATTAACTTTTAATTATTATAACTCT
Found at i:16890634 original size:82 final size:82
Alignment explanation
Indices: 16890540--16890704 Score: 330
Period size: 82 Copynumber: 2.0 Consensus size: 82
16890530 GTTTTCCCTC
16890540 ATTTTTTAATTATTATAACTTTTAAGAATATTAGAACTTTTGCTTATTAACTTTTAATTATTATA
1 ATTTTTTAATTATTATAACTTTTAAGAATATTAGAACTTTTGCTTATTAACTTTTAATTATTATA
16890605 ACTCTTTTTACTTATTA
66 ACTCTTTTTACTTATTA
16890622 ATTTTTTAATTATTATAACTTTTAAGAATATTAGAACTTTTGCTTATTAACTTTTAATTATTATA
1 ATTTTTTAATTATTATAACTTTTAAGAATATTAGAACTTTTGCTTATTAACTTTTAATTATTATA
16890687 ACTCTTTTTACTTATTA
66 ACTCTTTTTACTTATTA
16890704 A
1 A
16890705 CTTTGGCTTC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.55
Consensus pattern (82 bp):
ATTTTTTAATTATTATAACTTTTAAGAATATTAGAACTTTTGCTTATTAACTTTTAATTATTATA
ACTCTTTTTACTTATTA
Found at i:16893137 original size:944 final size:943
Alignment explanation
Indices: 16891313--16895375 Score: 7114
Period size: 944 Copynumber: 4.3 Consensus size: 943
16891303 CTCTCATTTA
* * *
16891313 ATTTCGCTTCAAGCAGCACAATGATGGTTGCTCCTTGAATCTACTAGTGATTCTTGTCTCTTCTT
1 ATTTCGCTTCAAGCAGCAGAATGATGGTTGCTCCTTGAATCTGCTACTGATTCTTGTCTCTTCTT
*
16891378 TATTTATCCTAATGTTAT-CCCTTTTTTATTTTAATGTCTACAGCGACAAGAGCAGCTATCTAAA
66 TATTTATCCTAATGTT-TCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTAAA
* * *
16891442 TCCGTCCAAAACCAAGAGGTAGTTTAATGTCTCTAAAAATGTCTTTATTCATTTTGAAAAGATAG
130 TCCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAG
* *
16891507 TCATAATCAATTATCCTTTCTATATTCTCGTTATTGTTTACCATGGAACTTTGAGAA-TTTTTCT
195 TCATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTGAGAATTTTTTCT
16891571 TTAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCATTTTTTTTGC
260 TTAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCATTTTTTTTGC
16891636 TTTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTG-CAAAAGTATGGGCTAA
325 TTTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAA
16891700 TATTGCCTACTTGTAAACTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTAC
390 TATTGCCTACTTGTAAACTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTAC
* *
16891765 TACCATCTTAAATAATTAATTAAACAGATAATAAAATATCCATTAAGCACATTTACTGGTTTATA
455 TACCATCTTAAATAATTAATTAAACAGATAATAAAATATCCAATAAGCACATTTACTGGTGTATA
16891830 GGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTT
520 GGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTT
16891895 TTCAGATTTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGATG
585 TTCAGATTTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGATG
16891960 ATTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACCT
650 ATTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACCT
*
16892025 TGAGTGATTAAATGCATTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTATGAAAAAC
715 TGAGTGATTAAATGCATTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTAAGAAAAAC
16892090 CAAACTACTCAAGTTTGCTTAAACTTTTTTCTGGTACAAACCTGTTCGTACTATTGTTTTAATCC
780 CAAACTACTCAAGTTTGCTTAAAC-TTTTTCTGGTACAAACCTGTTCGTACTATTGTTTTAATCC
16892155 AAATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCAGC
844 AAATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCAGC
*
16892220 TTATTTCTTATTTATCCTAATGTTTCCCCTTTTTG
909 TTATTGCTTATTTATCCTAATGTTTCCCCTTTTTG
* * * *
16892255 ATTTCGCTTCAAGTAGCAGAACGATGGTTGCTCCTTGAATCTGCTACCGATTCTTATCTCTTCTT
1 ATTTCGCTTCAAGCAGCAGAATGATGGTTGCTCCTTGAATCTGCTACTGATTCTTGTCTCTTCTT
* * *
16892320 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGTAGTGACAAGAGCCGCTATCTAAAT
66 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTAAAT
*
16892385 CCATCCAAAAGCAAAAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
131 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
*
16892450 CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATAGATCTTTGAGAATTTTTTCTT
196 CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTGAGAATTTTTTCTT
* * *
16892515 TAGTGTTCATCTTATAGCTTTCATCCTTTGTTCCATTTTGTTGATATGATAGCATTTTTTTTTGC
261 TAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCA-TTTTTTTTGC
* *
16892580 TTTGTCTACATTTCAATTTACTGTTTAAATCTATATTTATGAAATGTGTCAAAAATATGGGCTAA
325 TTTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAA
16892645 TATTGCCTACTTGTAAACTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTAC
390 TATTGCCTACTTGTAAACTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTAC
* *
16892710 TACCATCTTAAATAATTAATTATACAGATAATAGAATATCCAATAAGCACATTTACTGGTGTATA
455 TACCATCTTAAATAATTAATTAAACAGATAATAAAATATCCAATAAGCACATTTACTGGTGTATA
*
16892775 GGGAAT-CTTTAGACCACATAATAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTT
520 GGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTT
*
16892839 TTCA-TTATTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGAT
585 TTCAGAT-TTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGAT
16892903 GATTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACC
649 GATTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACC
*
16892968 TTGAGTGATTAAATGCATTTTTTTAGACTAAAGTAAAAATTTGATGTTTAGTGTTGCTAAGAAAA
714 TTGAGTGATTAAATGCA-TTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTAAGAAAA
*
16893033 ACCAAACTACTCAAGTTTGCTTACACTTTTTCTGGTACAAACCTGTTCGTACTATTGTTTTAATC
778 ACCAAACTACTCAAGTTTGCTTAAACTTTTTCTGGTACAAACCTGTTCGTACTATTGTTTTAATC
* *
16893098 CAAATTCTCGAGAATCTGAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCAG
843 CAAATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCAG
16893163 CTTATTGCTTATTTATCCTAATGTTTCCCCTTTTTG
908 CTTATTGCTTATTTATCCTAATGTTTCCCCTTTTTG
* * * *
16893199 ATTTCGCTTCAAGCAACCGAATGATGGTTGCTTCTTGAATCTGCTACTAATTCTTGTCTCTTCTT
1 ATTTCGCTTCAAGCAGCAGAATGATGGTTGCTCCTTGAATCTGCTACTGATTCTTGTCTCTTCTT
* * *
16893264 TATTTATCCCAATGTTTCCCATTTTTTATTTTAATGTCTACAGCGACAAGAGCAGCTATCTAAAT
66 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTAAAT
*
16893329 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTAGTCATTTTGAAAAGATAGT
131 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
* *
16893394 CATAATCAATTATCCTTTCTATATCCTCGTTATTATTTCCCATGGATCTTTGAGAATTTTTTCTT
196 CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTGAGAATTTTTTCTT
* *
16893459 TAGTGTTCATCTTATGGCTTTCATCCTTTTTTTGATTTTGTTGATCTGATAGCATTTTTTTTTGC
261 TAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCA-TTTTTTTTGC
16893524 TTTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAA
325 TTTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAA
*
16893589 TATTTCCTACTTGTAAACCTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTA
390 TATTGCCTACTTGTAAA-CTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTA
* * * *
16893654 CTACCACCTTATATAATTAATTAAACCGATAATAAAATATCCATTAAGCACATTTACTGGTGTAT
454 CTACCATCTTAAATAATTAATTAAACAGATAATAAAATATCCAATAAGCACATTTACTGGTGTAT
16893719 AGGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGT
519 AGGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGT
* *
16893784 TTTCATATTTTCTAATAAGAATGATGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGAT
584 TTTCAGATTTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGAT
* * * *
16893849 GATTTGATATTTTGAATAGTTTTACAGTCTCGGCATTCAGAAACTATGAGATTGATGTCATAACC
649 GATTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACC
* *
16893914 TTAAGTGATTAAATGCATTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCCAAGAAAAA
714 TTGAGTGATTAAATGCATTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTAAGAAAAA
* * * *
16893979 CCAAACTACTCAAGTTTGCTTAAAATTTTTC-GAGTAGACACCTGTTCGTATTATTGTTTTAAT-
779 CCAAACTACTCAAGTTTGCTTAAACTTTTTCTG-GTACAAACCTGTTCGTACTATTGTTTTAATC
*
16894042 CATAATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTACGCA
843 CA-AATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCA
* * *
16894107 GTTTATTGCTTATATATCCTAATGTTTCCCCTTTTTT
907 GCTTATTGCTTATTTATCCTAATGTTTCCCCTTTTTG
* * * *
16894144 ATTTCACTTCAAGCAGCACAATGATGGTTGCTCCCTGAATCTGCTACCGATTCTTGTCTCTTCTT
1 ATTTCGCTTCAAGCAGCAGAATGATGGTTGCTCCTTGAATCTGCTACTGATTCTTGTCTCTTCTT
*
16894209 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTGAAT
66 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTAAAT
* *
16894274 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATACCGTTATTCATTTTGAAAAGATAGT
131 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
*
16894339 CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTTAGAATTTTTTCTT
196 CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTGAGAATTTTTTCTT
16894404 TAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCATTTTTTTTGCT
261 TAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCATTTTTTTTGCT
16894469 TTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAAT
326 TTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAAT
16894534 ATTGCCTACTTGTAAACTTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTAC
391 ATTGCCTACTTGTAAAC-TCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTAC
* *
16894599 TACCATCTTAAATAATTAATTATACAGATAATAGAATATCCAATAAGCACATTTACTGGTGTATA
455 TACCATCTTAAATAATTAATTAAACAGATAATAAAATATCCAATAAGCACATTTACTGGTGTATA
16894664 GGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTT
520 GGGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTT
*
16894729 TTCAGATTTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAAGGGTTAGGATG
585 TTCAGATTTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGATG
*
16894794 ATTTGATATTTTGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACCT
650 ATTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACCT
*
16894859 TGAGTGGTTAAATGCATTTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTAAGAAAAA
715 TGAGTGATTAAATGCA-TTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTAAGAAAAA
* * * * *
16894924 CCAAACTACTCAAGTTTGCTTACACTTTTTCTAGTAGAAACCTATTCGTACTATTGTTTGAATCC
779 CCAAACTACTCAAGTTTGCTTAAACTTTTTCTGGTACAAACCTGTTCGTACTATTGTTTTAATCC
* *
16894989 AAATTCTAGAGAATCTGAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAATCTAAGCAGC
844 AAATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCAGC
*
16895054 TTATTGCTTATTTATCCTAATGTTCCCCCCTTTTTG
909 TTATTGCTTATTTATCCTAATGTT-TCCCCTTTTTG
* *
16895090 ATTTCGCTTCAAGCAGCAGAACGATGGTTGCTCTTTGAATCTGCTACTGATTCTTGTCTCTTCTT
1 ATTTCGCTTCAAGCAGCAGAATGATGGTTGCTCCTTGAATCTGCTACTGATTCTTGTCTCTTCTT
*
16895155 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTTTGCAGCGACAAGAGCAGCTATCTAAAT
66 TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTAAAT
16895220 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
131 CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
* *
16895285 CATAATCAATTATCCTTTCTATATCCTCATTATTATTTACCATGGATCTTTGAGAATTTTTTCTT
196 CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTGAGAATTTTTTCTT
*
16895350 TAGTGTTCATCTTATTGCTTTCATCC
261 TAGTGTTCATCTTATGGCTTTCATCC
16895376 ATTCGTGGTG
Statistics
Matches: 2952, Mismatches: 153, Indels: 28
0.94 0.05 0.01
Matches are distributed among these distances:
941 1 0.00
942 231 0.08
943 61 0.02
944 1177 0.40
945 1004 0.34
946 477 0.16
947 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (943 bp):
ATTTCGCTTCAAGCAGCAGAATGATGGTTGCTCCTTGAATCTGCTACTGATTCTTGTCTCTTCTT
TATTTATCCTAATGTTTCCCCTTTTTTATTTTAATGTCTGCAGCGACAAGAGCAGCTATCTAAAT
CCATCCAAAAGCAAGAGGTAGTTTAATGTCTCTAAAAATGCCTTTATTCATTTTGAAAAGATAGT
CATAATCAATTATCCTTTCTATATCCTCGTTATTGTTTACCATGGATCTTTGAGAATTTTTTCTT
TAGTGTTCATCTTATGGCTTTCATCCTTTGTTCGATTTTGTTGATCTGATAGCATTTTTTTTGCT
TTGTCTACATTTCAATTTACTGTTTAAACCTATATTTATGAAATGTGTCAAAAGTATGGGCTAAT
ATTGCCTACTTGTAAACTCCACTTGTTTATTCCTGCACTGTCATCGTATATTAGTTGAAATTACT
ACCATCTTAAATAATTAATTAAACAGATAATAAAATATCCAATAAGCACATTTACTGGTGTATAG
GGAATGCTTTAGACCACATAACAAGCTAATGTGGAACAAGCTGCTGGTTTGGCTATGTCTTGTTT
TCAGATTTTCTAATAAGAATGTTGCAAAGGCTTACCCTTTTTAAAAGAAAAAGGGGTTAGGATGA
TTTGATATTATGAGTAGTTTTACAGTCTCGGCCTTCAAAAACTATGAGATTGATGTCATAACCTT
GAGTGATTAAATGCATTTTTTAGACTAAAGTAAAAATTTGATGTCTAGTGTTGCTAAGAAAAACC
AAACTACTCAAGTTTGCTTAAACTTTTTCTGGTACAAACCTGTTCGTACTATTGTTTTAATCCAA
ATTCTAGAGAATCTAAAGGGGTTTGTCAAGATCAAGTGCAATTTTACACTGAAGCTAAGCAGCTT
ATTGCTTATTTATCCTAATGTTTCCCCTTTTTG
Found at i:16896823 original size:25 final size:23
Alignment explanation
Indices: 16896769--16896832 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
16896759 AATAGACATG
* *
16896769 TACATAAAAAATATATATATGTA
1 TACATTAAAAATATATATATATA
* *
16896792 TAGATTAAAAATATTATATAATATC
1 TACATTAAAAATA-TATAT-ATATA
*
16896817 TACATTAAAAAAATAT
1 TACATTAAAAATATAT
16896833 GTGTATAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 11 0.33
24 8 0.24
25 14 0.42
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (23 bp):
TACATTAAAAATATATATATATA
Found at i:16900697 original size:21 final size:21
Alignment explanation
Indices: 16900673--16900724 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
16900663 CCATTGTTTT
*
16900673 TAATCTCACTACTACAGTATC
1 TAATCTCACTACTACAGTAAC
**
16900694 TAATCTCACCGCTACAGTAAC
1 TAATCTCACTACTACAGTAAC
*
16900715 TAATTTCACT
1 TAATCTCACT
16900725 GCCATTGCTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.33
Consensus pattern (21 bp):
TAATCTCACTACTACAGTAAC
Found at i:16903812 original size:87 final size:87
Alignment explanation
Indices: 16903666--16903839 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
16903656 GGTCCATAAG
16903666 GTACCTTGTTGCAAGCCCAATTAATTTCTCCTCCCTTTCGACCCACATTCAATTTTTGTCTTTAA
1 GTACCTTGTTGCAAGCCCAATTAATTTCTCCTCCCTTTCGACCCACATTCAATTTTTGTCTTTAA
16903731 GGCCCTTCACTAAATTTCTCTT
66 GGCCCTTCACTAAATTTCTCTT
*
16903753 GTACCTTGTTGCAAGCCCAATTAATTTCTCCTCCCTTTCGACCCACCTTCAATTTTTGTCTTTAA
1 GTACCTTGTTGCAAGCCCAATTAATTTCTCCTCCCTTTCGACCCACATTCAATTTTTGTCTTTAA
16903818 GGCCCTTCACTAAATTTCTCTT
66 GGCCCTTCACTAAATTTCTCTT
16903840 CCTATGTTGA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.20, C:0.30, G:0.09, T:0.40
Consensus pattern (87 bp):
GTACCTTGTTGCAAGCCCAATTAATTTCTCCTCCCTTTCGACCCACATTCAATTTTTGTCTTTAA
GGCCCTTCACTAAATTTCTCTT
Found at i:16904845 original size:15 final size:15
Alignment explanation
Indices: 16904825--16904880 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
16904815 CTTTTGCTCA
16904825 ATCTTTTCTTTATTT
1 ATCTTTTCTTTATTT
*
16904840 ATCTTTTTCTTTCTTT
1 ATC-TTTTCTTTATTT
* *
16904856 -TATTTTCTTTGTTTT
1 ATCTTTTCTTT-ATTT
16904871 AT-TTTTCTTT
1 ATCTTTTCTTT
16904881 TAATATTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 8 0.23
15 15 0.43
16 12 0.34
ACGTcount: A:0.09, C:0.12, G:0.02, T:0.77
Consensus pattern (15 bp):
ATCTTTTCTTTATTT
Found at i:16904863 original size:14 final size:15
Alignment explanation
Indices: 16904828--16904880 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 15
16904818 TTGCTCAATC
* *
16904828 TTTTCTTTATTTATCT
1 TTTTCTTTCTTT-TAT
16904844 TTTTCTTTCTTTTA-
1 TTTTCTTTCTTTTAT
*
16904858 TTTTCTTTGTTTTAT
1 TTTTCTTTCTTTTAT
16904873 TTTTCTTT
1 TTTTCTTT
16904881 TAATATTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.39
15 9 0.27
16 11 0.33
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTTCTTTCTTTTAT
Found at i:16906217 original size:38 final size:42
Alignment explanation
Indices: 16906140--16906217 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
16906130 TCAGACTTAG
* * *
16906140 GATTTATTTAAATTTTGGTTAATGTCATATTTTCTTAAATAT
1 GATTTATTTAAATTTTGGTTAATGTCAGAGTTTCGTAAATAT
16906182 GATTTATTTAAATTTTGG-T-AT-TC-GAGTTTCGTAAAT
1 GATTTATTTAAATTTTGGTTAATGTCAGAGTTTCGTAAAT
16906218 TTTGAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 10 0.30
39 2 0.06
40 2 0.06
41 1 0.03
42 18 0.55
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (42 bp):
GATTTATTTAAATTTTGGTTAATGTCAGAGTTTCGTAAATAT
Found at i:16909641 original size:41 final size:41
Alignment explanation
Indices: 16909593--16909685 Score: 168
Period size: 41 Copynumber: 2.3 Consensus size: 41
16909583 GACTTTAAGT
*
16909593 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
*
16909634 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
16909675 CTAGCAGGCTA
1 CTAGCAGGCTA
16909686 AGTGTCGTTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:16912660 original size:41 final size:41
Alignment explanation
Indices: 16912603--16912686 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
16912593 TTCGCATTGA
*
16912603 ATTAATAAATTTTTAATTAAATTATAAAGTAAATTTTTTGG
1 ATTAATAAATTTTTAATTAAATTATAAAGTAAAATTTTTGG
16912644 ATTAATAAATTTTTAATTAAATTATAAAGTAAAATTTTTGG
1 ATTAATAAATTTTTAATTAAATTATAAAGTAAAATTTTTGG
16912685 AT
1 AT
16912687 GAATGGGATT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (41 bp):
ATTAATAAATTTTTAATTAAATTATAAAGTAAAATTTTTGG
Found at i:16914151 original size:23 final size:22
Alignment explanation
Indices: 16914125--16914179 Score: 74
Period size: 24 Copynumber: 2.4 Consensus size: 22
16914115 TCAAGCCATC
16914125 AAATATAATTGACCAATCTTTTT
1 AAATATAATTGACCAAT-TTTTT
*
16914148 AAATATATTGTTGACCAATTTTTT
1 AAATATA--ATTGACCAATTTTTT
16914172 AAATATAA
1 AAATATAA
16914180 ATAAGTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 12 0.43
25 9 0.32
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (22 bp):
AAATATAATTGACCAATTTTTT
Found at i:16914155 original size:25 final size:24
Alignment explanation
Indices: 16914127--16914178 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
16914117 AAGCCATCAA
16914127 ATATAATTGACCAATCTTTTTAAAT
1 ATATAATTGACCAAT-TTTTTAAAT
**
16914152 ATATTGTTGACCAATTTTTTAAAT
1 ATATAATTGACCAATTTTTTAAAT
16914176 ATA
1 ATA
16914179 AATAAGTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (24 bp):
ATATAATTGACCAATTTTTTAAAT
Found at i:16923291 original size:37 final size:38
Alignment explanation
Indices: 16923238--16923342 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
16923228 TTCCAAAAAA
*
16923238 AAATATTATTTTAATAGTTTAATATTAATTTTAAT-TT
1 AAATATTATCTTAATAGTTTAATATTAATTTTAATATT
*
16923275 -AATACTTATCTTAATAGTATT-TTATTAA-TTTAATATT
1 AAATA-TTATCTTAATAGT-TTAATATTAATTTTAATATT
*
16923312 AAAATGATTATCTTAATA--TTAAAATTAATTT
1 -AAAT-ATTATCTTAATAGTTTAATATTAATTT
16923343 AATGTTTATC
Statistics
Matches: 56, Mismatches: 4, Indels: 15
0.75 0.05 0.20
Matches are distributed among these distances:
36 12 0.21
37 25 0.45
38 4 0.07
39 14 0.25
40 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (38 bp):
AAATATTATCTTAATAGTTTAATATTAATTTTAATATT
Found at i:16923313 original size:11 final size:11
Alignment explanation
Indices: 16923239--16923313 Score: 50
Period size: 11 Copynumber: 6.7 Consensus size: 11
16923229 TCCAAAAAAA
*
16923239 AATATTATTTT
1 AATATTAATTT
16923250 AATAGTTTAATATT
1 AATA--TTAAT-TT
*
16923264 AATTTTAATTT
1 AATATTAATTT
16923275 AATACTT-ATCTT
1 AATA-TTAAT-TT
*
16923287 AATAGT-ATTT
1 AATATTAATTT
16923297 --TATTAATTT
1 AATATTAATTT
16923306 AATATTAA
1 AATATTAA
16923314 AATGATTATC
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 20 0.39
12 13 0.25
13 4 0.08
14 5 0.10
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (11 bp):
AATATTAATTT
Found at i:16923395 original size:62 final size:59
Alignment explanation
Indices: 16923324--16923440 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
16923314 AATGATTATC
* * * *
16923324 TTAATATTAAAATTAATTTAATGTTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAT
1 TTAATATTAAAATTAATTTAATATTTA--TT-AAGATAAATATTATATTAATTTAATAAGAT
*
16923386 TTAATATTAAATTTAATTTAATATTTATTAAGATAAATATTATATTAATTTAATA
1 TTAATATTAAAATTAATTTAATATTTATTAAGATAAATATTATATTAATTTAATA
16923441 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 23 0.46
60 2 0.04
62 25 0.50
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (59 bp):
TTAATATTAAAATTAATTTAATATTTATTAAGATAAATATTATATTAATTTAATAAGAT
Found at i:16930829 original size:21 final size:21
Alignment explanation
Indices: 16930778--16930823 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
16930768 AGATTTAATA
16930778 TTAAATTTAATCTAATTAAAT
1 TTAAATTTAATCTAATTAAAT
16930799 TTAAATTTAATCTAATTAAAT
1 TTAAATTTAATCTAATTAAAT
16930820 TTAA
1 TTAA
16930824 TATTAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAATTTAATCTAATTAAAT
Found at i:16931811 original size:15 final size:16
Alignment explanation
Indices: 16931783--16931826 Score: 65
Period size: 14 Copynumber: 2.9 Consensus size: 16
16931773 TTTTCTTTAA
*
16931783 ATTTAGTTTGTTTTTT
1 ATTTAGTTTATTTTTT
16931799 ATTT-GTTTA-TTTTT
1 ATTTAGTTTATTTTTT
16931813 ATTTAGTTTATTTT
1 ATTTAGTTTATTTT
16931827 AATTCCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 9 0.36
15 9 0.36
16 7 0.28
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (16 bp):
ATTTAGTTTATTTTTT
Found at i:16931813 original size:14 final size:15
Alignment explanation
Indices: 16931783--16931826 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
16931773 TTTTCTTTAA
*
16931783 ATTTAGTTTGTTTTTT
1 ATTTAGTTT-ATTTTT
16931799 ATTT-GTTTATTTTT
1 ATTTAGTTTATTTTT
16931813 ATTTAGTTTATTTT
1 ATTTAGTTTATTTT
16931827 AATTCCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 13 0.50
16 4 0.15
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (15 bp):
ATTTAGTTTATTTTT
Found at i:16937732 original size:29 final size:29
Alignment explanation
Indices: 16937699--16937758 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
16937689 TAGGAATAGG
*
16937699 AAATTCCATTAGGATT-TCTTAGGTTAGTT
1 AAATTCCACTAGG-TTATCTTAGGTTAGTT
*
16937728 AAATTCCACTAGGTTATTTTAGGTTAGTT
1 AAATTCCACTAGGTTATCTTAGGTTAGTT
16937757 AA
1 AA
16937759 TTTAATTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (29 bp):
AAATTCCACTAGGTTATCTTAGGTTAGTT
Found at i:16939462 original size:12 final size:12
Alignment explanation
Indices: 16939445--16939469 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16939435 GGTGTTCATT
16939445 TGGTTAACCGAC
1 TGGTTAACCGAC
16939457 TGGTTAACCGAC
1 TGGTTAACCGAC
16939469 T
1 T
16939470 CGAAATTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TGGTTAACCGAC
Found at i:16939668 original size:20 final size:20
Alignment explanation
Indices: 16939640--16939686 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
16939630 AATATCCCCG
* *
16939640 ATTAACCGAATTACCCGAAA
1 ATTACCCGAATTACCCAAAA
16939660 ATTACCCGAATTACCCAAAA
1 ATTACCCGAATTACCCAAAA
16939680 ATTACCC
1 ATTACCC
16939687 AAAAAGTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.30, G:0.06, T:0.21
Consensus pattern (20 bp):
ATTACCCGAATTACCCAAAA
Found at i:16939691 original size:11 final size:11
Alignment explanation
Indices: 16939648--16939691 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
16939638 CGATTAACCG
*
16939648 AATTACCCGAA
1 AATTACCCAAA
*
16939659 AATTACCC--G
1 AATTACCCAAA
16939668 AATTACCCAAA
1 AATTACCCAAA
16939679 AATTACCCAAA
1 AATTACCCAAA
16939690 AA
1 AA
16939692 GTTCGGTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.28
11 21 0.72
ACGTcount: A:0.50, C:0.27, G:0.05, T:0.18
Consensus pattern (11 bp):
AATTACCCAAA
Found at i:16942120 original size:14 final size:15
Alignment explanation
Indices: 16942093--16942124 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16942083 AATGAACTAT
16942093 TAGAAAAAAGATTAA
1 TAGAAAAAAGATTAA
16942108 TAGAAAAAA-ATTAA
1 TAGAAAAAAGATTAA
16942122 TAG
1 TAG
16942125 TCCTCATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (15 bp):
TAGAAAAAAGATTAA
Found at i:16953521 original size:16 final size:16
Alignment explanation
Indices: 16953484--16953523 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
16953474 TTAATAAAAT
* *
16953484 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
16953500 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
16953516 TAAAATTA
1 TAAAATTA
16953524 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:16953523 original size:22 final size:22
Alignment explanation
Indices: 16953456--16953508 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
16953446 TAATTAAAAT
* * *
16953456 TAAAATTAAAATTATTTTTTAA
1 TAAAATTAAAACTAATTGTTAA
*
16953478 TAAAATTAAAACTAATTGTTAT
1 TAAAATTAAAACTAATTGTTAA
16953500 TAAAATTAA
1 TAAAATTAA
16953509 TTGTTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAAAATTAAAACTAATTGTTAA
Done.