Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 70 of 228
Found at i:20832561 original size:10 final size:10
Alignment explanation
Indices: 20832507--20832561 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
20832497 TTTATTTCTA
20832507 TTTTATAATT
1 TTTTATAATT
*
20832517 TAATTTATATTT
1 T--TTTATAATT
*
20832529 TTTTATATTT
1 TTTTATAATT
20832539 TTTTAT-A-T
1 TTTTATAATT
20832547 TTTTATAATT
1 TTTTATAATT
*
20832557 CTTTA
1 TTTTA
20832562 AAGTTGGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 7 0.18
9 1 0.03
10 21 0.55
12 9 0.24
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTATAATT
Found at i:20833578 original size:14 final size:14
Alignment explanation
Indices: 20833547--20833585 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
20833537 TTCAACTAGT
*
20833547 ATAATA-ATAATCA
1 ATAATATATAATAA
*
20833560 TTAATATATAATAA
1 ATAATATATAATAA
20833574 ATAATATATAAT
1 ATAATATATAAT
20833586 GTAGTACTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAATATATAATAA
Found at i:20841051 original size:21 final size:22
Alignment explanation
Indices: 20840996--20841131 Score: 81
Period size: 21 Copynumber: 6.5 Consensus size: 22
20840986 GCTCTTACGG
20840996 GCTTCTGTTTAACTC-ATATGA
1 GCTTCTGTTTAACTCTATATGA
* * *
20841017 GTTTCCGTTCAACTCTAT-TGA
1 GCTTCTGTTTAACTCTATATGA
* *
20841038 GCTTCTATTTAACTCT-TATGG
1 GCTTCTGTTTAACTCTATATGA
* * * *
20841059 GTTTCTATTCAGCTCT-TATGA
1 GCTTCTGTTTAACTCTATATGA
* * *
20841080 GCTTCCGTTCAAAC-CT-TATGG
1 GCTTCTGTT-TAACTCTATATGA
* *
20841101 GTTTCTGTTTAGCTC-A-ATGA
1 GCTTCTGTTTAACTCTATATGA
20841121 GCTTCTGTTTA
1 GCTTCTGTTTA
20841132 GCCTTCGAGC
Statistics
Matches: 86, Mismatches: 24, Indels: 11
0.71 0.20 0.09
Matches are distributed among these distances:
20 16 0.19
21 66 0.77
22 4 0.05
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (22 bp):
GCTTCTGTTTAACTCTATATGA
Found at i:20841081 original size:42 final size:41
Alignment explanation
Indices: 20840996--20841131 Score: 139
Period size: 42 Copynumber: 3.3 Consensus size: 41
20840986 GCTCTTACGG
* * ** *
20840996 GCTTCTGTTTAACTCATATGAGTTTCCGTTCAACTCTATTGA
1 GCTTCTGTTTAACTCTTATGGGTTTCTATTCAGCTCTA-TGA
*
20841038 GCTTCTATTTAACTCTTATGGGTTTCTATTCAGCTCTTATGA
1 GCTTCTGTTTAACTCTTATGGGTTTCTATTCAGCTC-TATGA
* * * * *
20841080 GCTTCCGTTCAAAC-CTTATGGGTTTCTGTTTAGCTCAATGA
1 GCTTCTGTT-TAACTCTTATGGGTTTCTATTCAGCTCTATGA
20841121 GCTTCTGTTTA
1 GCTTCTGTTTA
20841132 GCCTTCGAGC
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
40 1 0.01
41 12 0.15
42 60 0.77
43 5 0.06
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (41 bp):
GCTTCTGTTTAACTCTTATGGGTTTCTATTCAGCTCTATGA
Found at i:20844763 original size:51 final size:51
Alignment explanation
Indices: 20844612--20844851 Score: 315
Period size: 51 Copynumber: 4.7 Consensus size: 51
20844602 TAAAAGTGAA
* * * *
20844612 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACGACGTGTATCGGAT
* * * * * *
20844662 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGTAGGCTACGACGTGTATCGGAT
* * * *
20844713 AGCT-TTGATCACGTGTGTAGTACTATATGTAGGCTACGACGTGTATCGGAT
1 AG-TGATGGTCACATGTGTAGTACTATGTGTAGGCTACGACGTGTATCGGAT
20844764 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACGACGTGTATCGGAT
1 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACGACGTGTATCGGAT
20844815 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTAC
1 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTAC
20844852 TATGTGAACC
Statistics
Matches: 167, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 4 0.02
50 42 0.25
51 119 0.71
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACGACGTGTATCGGAT
Found at i:20844833 original size:25 final size:25
Alignment explanation
Indices: 20844753--20844833 Score: 71
Period size: 25 Copynumber: 3.2 Consensus size: 25
20844743 AGGCTACGAC
20844753 GTGTATCGGATAGTGATGGTCACAT
1 GTGTATCGGATAGTGATGGTCACAT
* *
20844778 GTGTA--GTACTATGTG-TAGG-CTACGAC
1 GTGTATCGGA-TA-GTGAT-GGTC-AC-AT
20844804 GTGTATCGGATAGTGATGGTCACAT
1 GTGTATCGGATAGTGATGGTCACAT
20844829 GTGTA
1 GTGTA
20844834 GTACTATGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
23 2 0.05
24 4 0.09
25 18 0.42
26 13 0.30
27 4 0.09
28 2 0.05
ACGTcount: A:0.23, C:0.12, G:0.32, T:0.32
Consensus pattern (25 bp):
GTGTATCGGATAGTGATGGTCACAT
Found at i:20853216 original size:19 final size:18
Alignment explanation
Indices: 20853177--20853218 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
20853167 ACACTCGCCG
* *
20853177 ATCA-CAACAATCTCCAC
1 ATCATCAACAATCTCAAA
20853194 ATCATCAACAATTCTCAAA
1 ATCATCAACAA-TCTCAAA
20853213 ATCATC
1 ATCATC
20853219 CTCTTAGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 6 0.29
19 11 0.52
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (18 bp):
ATCATCAACAATCTCAAA
Found at i:20854835 original size:37 final size:37
Alignment explanation
Indices: 20854778--20854848 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
20854768 GTTTACAGAT
*
20854778 CAAATATAATTCAATCGTATCATTTACTATTCATATC
1 CAAATATAATTAAATCGTATCATTTACTATTCATATC
*
20854815 CAAATATAATTAAATTGTATCATTTACTATTCAT
1 CAAATATAATTAAATCGTATCATTTACTATTCAT
20854849 GCATATTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (37 bp):
CAAATATAATTAAATCGTATCATTTACTATTCATATC
Found at i:20856125 original size:27 final size:25
Alignment explanation
Indices: 20856095--20856151 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
20856085 ACATAATTGG
20856095 GAAGCACACTCTCGAGCCATATAACAA
1 GAAGCACA-TCT-GAGCCATATAACAA
* * * *
20856122 GAAGCTCATGTGAGCCATGTAACAG
1 GAAGCACATCTGAGCCATATAACAA
20856147 GAAGC
1 GAAGC
20856152 TTATCCGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 17 0.65
26 2 0.08
27 7 0.27
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.16
Consensus pattern (25 bp):
GAAGCACATCTGAGCCATATAACAA
Found at i:20866994 original size:21 final size:20
Alignment explanation
Indices: 20866961--20867000 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
20866951 CCTTTTTAAT
20866961 ATAAAACCAAATAGAAACCA
1 ATAAAACCAAATAGAAACCA
* *
20866981 ATAAATCCTAAATATAAACC
1 ATAAAACC-AAATAGAAACC
20867001 CACAAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.60, C:0.20, G:0.03, T:0.17
Consensus pattern (20 bp):
ATAAAACCAAATAGAAACCA
Found at i:20874018 original size:221 final size:219
Alignment explanation
Indices: 20873610--20874053 Score: 610
Period size: 221 Copynumber: 2.0 Consensus size: 219
20873600 AGTTTAAATC
* * *
20873610 CCTTAGGACTCTCATCTTGCAGATAGACACTAATCTCAGCCACTGATGTAATTCAATCTGTACCG
1 CCTTAGGAATCTCATATTGCAGATAAACACTAATCTCAGCCACTGATGTAATTCAATCTGTACCG
* * * * * *
20873675 TTGGATTTGGGGGAGCTCAACTAAATAGAGGTCTTCTCCCTCATTTGTAATCACTTAGTTATTCC
66 TTGGATCTGGGAGAGATCAACTAAATAGAGGTCTTCCCCCTCATTTGTAATCACTCAGTTAATCC
* *
20873740 TTCTAAGTAATAGAATATTTTTTAGAACATTTACTCAAACACTTGGTGTGTTATTATTCTCTTTT
131 TTCTAAGTAATAGAATATTTTTTAGAACATTTACTCAAACACTTGGTGTGCTATTATTCTCTTTC
20873805 GGC-TTTTCTGTTCAATACAAGTT
196 GGCTTTTTCTGTTCAATACAAGTT
* * * *
20873828 CCTTAGGAATCTCATATTGTAGATAAACACTAATC-CTAGTCATTGATGTAATTCAATTTGTACC
1 CCTTAGGAATCTCATATTGCAGATAAACACTAATCTC-AGCCACTGATGTAATTCAATCTGTACC
20873892 GTTGGATCT-GGAGAGATCAACTATAAATAGA-GTCCTTCCCCCTCATTTGTAATCACTCAGTTG
65 GTTGGATCTGGGAGAGATCAAC--TAAATAGAGGT-CTTCCCCCTCATTTGTAATCACTCAG-T-
**
20873955 TAATCCTTC-ATAGTAATAGAATATTTTTTAGAGTATTTACTCAAACACTTGGTGTGCTATTATT
125 TAATCCTTCTA-AGTAATAGAATATTTTTTAGAACATTTACTCAAACACTTGGTGTGCTATTATT
* * *
20874019 TTCTTTCGGCTTTTTTTGTTCAATATAAGTT
189 CTCTTTCGGCTTTTTCTGTTCAATACAAGTT
20874050 CCTT
1 CCTT
20874054 TGTATTTTCG
Statistics
Matches: 198, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
217 11 0.06
218 65 0.33
219 32 0.16
220 2 0.01
221 66 0.33
222 22 0.11
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (219 bp):
CCTTAGGAATCTCATATTGCAGATAAACACTAATCTCAGCCACTGATGTAATTCAATCTGTACCG
TTGGATCTGGGAGAGATCAACTAAATAGAGGTCTTCCCCCTCATTTGTAATCACTCAGTTAATCC
TTCTAAGTAATAGAATATTTTTTAGAACATTTACTCAAACACTTGGTGTGCTATTATTCTCTTTC
GGCTTTTTCTGTTCAATACAAGTT
Found at i:20874638 original size:26 final size:26
Alignment explanation
Indices: 20874609--20874667 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
20874599 CCAAGTACGA
*
20874609 TTTCT-AGCCTTCATTGCTGATTATTT
1 TTTCTAAGCCTTCATTGC-CATTATTT
*
20874635 TTTCACTAAGCCTTCATTGCCATTTTTT
1 TTT--CTAAGCCTTCATTGCCATTATTT
20874663 TTTCT
1 TTTCT
20874668 TTCAAACCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
26 5 0.18
28 11 0.39
29 12 0.43
ACGTcount: A:0.15, C:0.22, G:0.08, T:0.54
Consensus pattern (26 bp):
TTTCTAAGCCTTCATTGCCATTATTT
Found at i:20887728 original size:12 final size:12
Alignment explanation
Indices: 20887713--20887740 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
20887703 AAATATTACC
20887713 TTAAATGGAAAT
1 TTAAATGGAAAT
20887725 TTAAATGGAAAT
1 TTAAATGGAAAT
20887737 TTAA
1 TTAA
20887741 TATTTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (12 bp):
TTAAATGGAAAT
Found at i:20895697 original size:61 final size:61
Alignment explanation
Indices: 20895589--20895738 Score: 167
Period size: 61 Copynumber: 2.4 Consensus size: 61
20895579 ATTTACACAT
* * * *
20895589 TCTATCAATTT-GATCCTAAATATAAAAAATAATAATAAATTTAGCCCTCAATATAAACAAAA
1 TCTATCAATTTAG-TCCTAAATCTAAAATAT-TTAATAAATTTAGCCCTCAAAATAAACAAAA
* * * * * * **
20895651 TTTGTCATTTTAGTTCTAATTCTAAAATATTTAATAAATTTGGCCCTCAAAATTTACAAAA
1 TCTATCAATTTAGTCCTAAATCTAAAATATTTAATAAATTTAGCCCTCAAAATAAACAAAA
20895712 TCTATCAATTTAGTCCTAAATCTAAAA
1 TCTATCAATTTAGTCCTAAATCTAAAA
20895739 ATTAAAATTA
Statistics
Matches: 70, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
61 48 0.69
62 21 0.30
63 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (61 bp):
TCTATCAATTTAGTCCTAAATCTAAAATATTTAATAAATTTAGCCCTCAAAATAAACAAAA
Found at i:20898133 original size:32 final size:32
Alignment explanation
Indices: 20898097--20898158 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
20898087 AGCTTTTGGT
20898097 TTTTTCATGTTGGCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGGCAAAGAGTTGAACAATGGA
** *
20898129 TTTTTTGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGGCAAAGAGTTGAACAATG
20898159 AAAATAGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGGCAAAGAGTTGAACAATGGA
Found at i:20898530 original size:4 final size:4
Alignment explanation
Indices: 20898513--20898555 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
20898503 ACAACGATCA
*
20898513 TATC TATC TTTC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
20898556 ATGTCGGTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.53
Consensus pattern (4 bp):
TATC
Found at i:20902646 original size:53 final size:53
Alignment explanation
Indices: 20902582--20902698 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
20902572 AAATTTTAAA
* *
20902582 TTTTAAATTTGAATATTGATATGTTAATATGTATTTAAAAATATATTGTTATC
1 TTTTAAATTTGAATATTGATATGTTAATATGTATTTAAAAATATACTATTATC
20902635 TTTTAAATTTGAATATTGATATGTTAATATGTATTTAAAAATATACTATTATC
1 TTTTAAATTTGAATATTGATATGTTAATATGTATTTAAAAATATACTATTATC
20902688 TTTT-AATTTGA
1 TTTTAAATTTGA
20902699 TTGAAAGATG
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 7 0.11
53 55 0.89
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.51
Consensus pattern (53 bp):
TTTTAAATTTGAATATTGATATGTTAATATGTATTTAAAAATATACTATTATC
Found at i:20914543 original size:27 final size:27
Alignment explanation
Indices: 20914503--20914568 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
20914493 CAGCAGAGCT
20914503 ACCAGT-ACAGTATATGTGGCAAAGCC
1 ACCAGTAACAGTATATGTGGCAAAGCC
* *
20914529 ACGAGTAACAGTATATGTGGCAGAGCC
1 ACCAGTAACAGTATATGTGGCAAAGCC
*
20914556 ACCCGTAACAGTA
1 ACCAGTAACAGTA
20914569 CTTCCTCCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
26 5 0.14
27 30 0.86
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
ACCAGTAACAGTATATGTGGCAAAGCC
Found at i:20914822 original size:27 final size:27
Alignment explanation
Indices: 20914771--20914822 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
20914761 ATGGTCATTT
* **
20914771 TACCCTACAAGGGTATTTCGGTAATCC
1 TACCCTACAAAGGTATTTCAATAATCC
20914798 TACCCTACAAAGGTATTTCAATAAT
1 TACCCTACAAAGGTATTTCAATAAT
20914823 TTCACAAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (27 bp):
TACCCTACAAAGGTATTTCAATAATCC
Found at i:20914863 original size:27 final size:27
Alignment explanation
Indices: 20914809--20914945 Score: 107
Period size: 27 Copynumber: 5.0 Consensus size: 27
20914799 ACCCTACAAA
** * **
20914809 GGTATTTCAATAATTTCACAAACCAGG
1 GGTATTTTGATAATTTTACAAATTAGG
*
20914836 GTTATTTTGATAATTTTACAAATTAGG
1 GGTATTTTGATAATTTTACAAATTAGG
* * * *
20914863 GGTGTTTCGGTAATTTTACAAATTAAG
1 GGTATTTTGATAATTTTACAAATTAGG
* **
20914890 GGTATTTT-AGTAATTTTACACA-CCGG
1 GGTATTTTGA-TAATTTTACAAATTAGG
*
20914916 AGGTATTTTGATAATTTCACAAATTCAGG
1 -GGTATTTTGATAATTTTACAAATT-AGG
20914945 G
1 G
20914946 TCTCGGTGAC
Statistics
Matches: 83, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
26 1 0.01
27 78 0.94
28 2 0.02
29 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GGTATTTTGATAATTTTACAAATTAGG
Found at i:20923256 original size:14 final size:14
Alignment explanation
Indices: 20923237--20923272 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
20923227 ATTACGTTAG
20923237 AAATTAAAGTATAT
1 AAATTAAAGTATAT
20923251 AAATTAAAGTATAT
1 AAATTAAAGTATAT
20923265 AAATTAAA
1 AAATTAAA
20923273 TAAAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (14 bp):
AAATTAAAGTATAT
Found at i:20925073 original size:17 final size:17
Alignment explanation
Indices: 20925051--20925149 Score: 76
Period size: 17 Copynumber: 5.7 Consensus size: 17
20925041 AGGCCAGATC
20925051 GGGCATGTGGGCCACAA
1 GGGCATGTGGGCCACAA
20925068 GGGCATGTGGGCCCACACA
1 GGGCATGTGGG-CCACA-A
* * *
20925087 -GGCATATGGGCCAGAC
1 GGGCATGTGGGCCACAA
* *
20925103 GGGTATGTGGGCCAGACA
1 GGGCATGTGGGCCACA-A
* * *
20925121 -GACGTGTGGGCCCACAC
1 GGGCATGTGGG-CCACAA
20925138 GGGCATGTGGGC
1 GGGCATGTGGGC
20925150 TCATAATTCT
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
17 36 0.57
18 26 0.41
19 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.41, T:0.13
Consensus pattern (17 bp):
GGGCATGTGGGCCACAA
Found at i:20925098 original size:35 final size:35
Alignment explanation
Indices: 20925052--20925149 Score: 117
Period size: 35 Copynumber: 2.8 Consensus size: 35
20925042 GGCCAGATCG
*
20925052 GGCATGTGGGCCACAAGGGCATGTGGGCCCACACA
1 GGCATGTGGGCCACACGGGCATGTGGGCCCACACA
* * * *
20925087 GGCATATGGGCCAGACGGGTATGTGGG-CCAGACA
1 GGCATGTGGGCCACACGGGCATGTGGGCCCACACA
* *
20925121 GACGTGTGGGCCCACACGGGCATGTGGGC
1 GGCATGTGGG-CCACACGGGCATGTGGGC
20925150 TCATAATTCT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
34 13 0.25
35 38 0.75
ACGTcount: A:0.20, C:0.26, G:0.41, T:0.13
Consensus pattern (35 bp):
GGCATGTGGGCCACACGGGCATGTGGGCCCACACA
Found at i:20925114 original size:52 final size:53
Alignment explanation
Indices: 20925042--20925149 Score: 139
Period size: 52 Copynumber: 2.1 Consensus size: 53
20925032 ACACGAGCTA
*
20925042 GGCCAGATCGGGCATGTGGGCCACA-AGGGCATGTGGGCCCACACAGGCATATG
1 GGCCAGATCGGGCATGTGGGCCACACA-GACATGTGGGCCCACACAGGCATATG
* * * * *
20925095 GGCCAGA-CGGGTATGTGGGCCAGACAGACGTGTGGGCCCACACGGGCATGTG
1 GGCCAGATCGGGCATGTGGGCCACACAGACATGTGGGCCCACACAGGCATATG
20925147 GGC
1 GGC
20925150 TCATAATTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 40 0.83
53 8 0.17
ACGTcount: A:0.20, C:0.26, G:0.41, T:0.13
Consensus pattern (53 bp):
GGCCAGATCGGGCATGTGGGCCACACAGACATGTGGGCCCACACAGGCATATG
Found at i:20931473 original size:296 final size:296
Alignment explanation
Indices: 20930939--20931531 Score: 1062
Period size: 296 Copynumber: 2.0 Consensus size: 296
20930929 ATTCACATTA
*
20930939 ATATCATTTGTATTTGTCCTTAATGGTTTTTGCACTCAAAACAAAATGTAAGCAAATATTTGCTC
1 ATATCATTTGTATTTGTCCTTAATGGTTTTTGCACTCAAAACAAAATGTAAGAAAATATTTGCTC
* *
20931004 ATTGATTACCTAAATTTTAACTGATACTAAGTTGTATTACGTTGTCGGATCGGAATGTAAGAAGA
66 ATTGATTACCTAAATTTTAACTAATACTAAGTTGTATTACGTTGTCGGATCGAAATGTAAGAAGA
20931069 CAACTTGTATTAGTAGGTAATCTAAAAGGTCTATAGTCTAAAAGGACTATTATGTCGTCTATCAA
131 CAACTTGTATTAGTAGGTAATCTAAAAGGTCTATAGTCTAAAAGGACTATTATGTCGTCTATCAA
* * * *
20931134 GTCCAAATAGGTGGATACCTTATCTTGGATATTAGAATGATTTACTCCCAGAAGATAGAGACATA
196 GTCCAAATAGGGGGATACATTATCTTGGATATCAGAATGATTTACTCCCAAAAGATAGAGACATA
20931199 AATATTATTTTCTAGACTAACAATACATTAGACATG
261 AATATTATTTTCTAGACTAACAATACATTAGACATG
20931235 ATATCATTTGTATTTGTCCTTAATGGTTTTTGCACTCAAAACAAAATGTAAGAAAATATTTGCTC
1 ATATCATTTGTATTTGTCCTTAATGGTTTTTGCACTCAAAACAAAATGTAAGAAAATATTTGCTC
* *
20931300 ATTGATTACCTAAATTTTAACTAATATTAAGTTGTATTACGTTGTCTGATCGAAATGTAAGAAGA
66 ATTGATTACCTAAATTTTAACTAATACTAAGTTGTATTACGTTGTCGGATCGAAATGTAAGAAGA
20931365 CAACTTGTATTAGTAGGTAATCTAAAAGGTCTATAGTCTAAAAGGACTATTATGTCGTCTATCAA
131 CAACTTGTATTAGTAGGTAATCTAAAAGGTCTATAGTCTAAAAGGACTATTATGTCGTCTATCAA
* *
20931430 GTCCAAAT-GGGGAGATGCATTATCTTGGATATCAGAGTGATTTACTCCCAAAAGATAGAGACAT
196 GTCCAAATAGGGG-GATACATTATCTTGGATATCAGAATGATTTACTCCCAAAAGATAGAGACAT
*
20931494 AAATGTTATTTTCTAGACTAACAATACATTAGACATG
260 AAATATTATTTTCTAGACTAACAATACATTAGACATG
20931531 A
1 A
20931532 CCCAAGTTGA
Statistics
Matches: 284, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
295 3 0.01
296 281 0.99
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (296 bp):
ATATCATTTGTATTTGTCCTTAATGGTTTTTGCACTCAAAACAAAATGTAAGAAAATATTTGCTC
ATTGATTACCTAAATTTTAACTAATACTAAGTTGTATTACGTTGTCGGATCGAAATGTAAGAAGA
CAACTTGTATTAGTAGGTAATCTAAAAGGTCTATAGTCTAAAAGGACTATTATGTCGTCTATCAA
GTCCAAATAGGGGGATACATTATCTTGGATATCAGAATGATTTACTCCCAAAAGATAGAGACATA
AATATTATTTTCTAGACTAACAATACATTAGACATG
Found at i:20932191 original size:13 final size:13
Alignment explanation
Indices: 20932173--20932204 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
20932163 TTTCCAGGAT
*
20932173 CCACACAGGATGG
1 CCACACAGAATGG
20932186 CCACACAGAATGG
1 CCACACAGAATGG
20932199 CCACAC
1 CCACAC
20932205 GCCCGTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.38, G:0.22, T:0.06
Consensus pattern (13 bp):
CCACACAGAATGG
Found at i:20933363 original size:18 final size:17
Alignment explanation
Indices: 20933340--20933373 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20933330 ATTGCTTTTT
20933340 ATTTTTGGTTTTAGTTTA
1 ATTTTT-GTTTTAGTTTA
*
20933358 ATTTTTGTTTTTGTTT
1 ATTTTTGTTTTAGTTT
20933374 TCTAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.74
Consensus pattern (17 bp):
ATTTTTGTTTTAGTTTA
Found at i:20937483 original size:20 final size:20
Alignment explanation
Indices: 20937441--20937483 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
20937431 ATTTTCTTTG
* *
20937441 TTTTTATTTTATTTATTTAT
1 TTTTTATTTTAGTTACTTAT
*
20937461 TTTTTATTTTAGTTACTTCT
1 TTTTTATTTTAGTTACTTAT
20937481 TTT
1 TTT
20937484 CTTGGTGTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTATTTTAGTTACTTAT
Found at i:20937565 original size:15 final size:15
Alignment explanation
Indices: 20937522--20937569 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
20937512 TTTTAGATTC
*
20937522 TTTTATT-TTAGTAT
1 TTTTATTGTTATTAT
*
20937536 TTTTATTTTTATTAT
1 TTTTATTGTTATTAT
* *
20937551 TTTTCTTGTTCTTAT
1 TTTTATTGTTATTAT
20937566 TTTT
1 TTTT
20937570 TTCATTTTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 7 0.24
15 22 0.76
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (15 bp):
TTTTATTGTTATTAT
Found at i:20939317 original size:6 final size:6
Alignment explanation
Indices: 20939220--20939295 Score: 91
Period size: 6 Copynumber: 12.5 Consensus size: 6
20939210 AGTTTATTTC
* *
20939220 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATG TTTATT GTTATTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT
* *
20939269 TCTTATA TTTA-T TTTGTT TTTATT TTT
1 T-TTATT TTTATT TTTATT TTTATT TTT
20939296 TGAACTATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
5 3 0.05
6 49 0.83
7 4 0.07
8 3 0.05
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:20942013 original size:14 final size:14
Alignment explanation
Indices: 20941990--20942020 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
20941980 TGTTGCGTTC
*
20941990 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
20942004 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
20942018 TTA
1 TTA
20942021 AAAATAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:20946101 original size:26 final size:26
Alignment explanation
Indices: 20946046--20946116 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
20946036 TCATCCTTAT
** *
20946046 TTTACCCCCAGTAAAATTTTGATAGT
1 TTTACCCCTGGTAAAATTTTGATAGA
20946072 TTTACCCCTGGTAAAATTTTGAT-GAA
1 TTTACCCCTGGTAAAATTTTGATAG-A
*
20946098 TTTACCCCTGATAAAATTT
1 TTTACCCCTGGTAAAATTT
20946117 CAAGAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.03
26 39 0.98
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.39
Consensus pattern (26 bp):
TTTACCCCTGGTAAAATTTTGATAGA
Found at i:20954301 original size:5 final size:5
Alignment explanation
Indices: 20954291--20954319 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
20954281 ATAACATTTT
20954291 TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATA
20954320 TTTATATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:20956364 original size:20 final size:20
Alignment explanation
Indices: 20956336--20956380 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
20956326 AGGTATTAGC
*
20956336 TTTTACAAGCTTTTAGAGAA
1 TTTTGCAAGCTTTTAGAGAA
20956356 TTTTGCAAGCTTTTAGAGAA
1 TTTTGCAAGCTTTTAGAGAA
20956376 TTTTG
1 TTTTG
20956381 TGTGGGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (20 bp):
TTTTGCAAGCTTTTAGAGAA
Found at i:20957453 original size:9 final size:9
Alignment explanation
Indices: 20957439--20957487 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
20957429 GATTAAATCA
20957439 CTTCCTCTT
1 CTTCCTCTT
*
20957448 CTTCCTCCT
1 CTTCCTCTT
* *
20957457 CCTCCTCCT
1 CTTCCTCTT
*
20957466 CCTCCTCTT
1 CTTCCTCTT
*
20957475 CTTCTTCTT
1 CTTCCTCTT
20957484 CTTC
1 CTTC
20957488 TTCTCTCGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (9 bp):
CTTCCTCTT
Found at i:20960609 original size:133 final size:134
Alignment explanation
Indices: 20960370--20960631 Score: 312
Period size: 133 Copynumber: 2.0 Consensus size: 134
20960360 GTGTTTACTT
* ** * ** *
20960370 CTTGTCTTACTACACCTATCAAAATGGCATTGAGATGGTACAACTTTTAGCCATATATTTAGGAT
1 CTTGTCTTACTACACCTATCAAAATGACATCAAGATGGTAAAACTTCAAGCCATATAATTAGGAT
* * * * ** * *
20960435 GACGTGTATTTTTCATTTGGGAAATGTTCTCCTTTTTGGTATCCATGCTGTATATAAATCATGAC
66 CACGTGTATTTTTCATTTGGGAAATATTCGCCTTCTTGGTATCCACACTCTAGATAAATCATGAC
20960500 ATGA
131 ATGA
* * * *
20960504 CTTGTCTTACTA-ACCTATCAAGATGACATCAAGGTGGTAAAACTTCAAGCCTTGTAATTAGGAT
1 CTTGTCTTACTACACCTATCAAAATGACATCAAGATGGTAAAACTTCAAGCCATATAATTAGGAT
* *
20960568 CATGTGTAGTTTTT-ATTTGGGAAATATTGGCCTTCTTGGTATCCACACTCTAGATAAATCATGA
66 CACGTGTA-TTTTTCATTTGGGAAATATTCGCCTTCTTGGTATCCACACTCTAGATAAATCATGA
20960632 GAATGCATCT
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
133 89 0.84
134 17 0.16
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (134 bp):
CTTGTCTTACTACACCTATCAAAATGACATCAAGATGGTAAAACTTCAAGCCATATAATTAGGAT
CACGTGTATTTTTCATTTGGGAAATATTCGCCTTCTTGGTATCCACACTCTAGATAAATCATGAC
ATGA
Found at i:20971272 original size:85 final size:85
Alignment explanation
Indices: 20971127--20971297 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 85
20971117 AACGCTCCAC
* * * * * * *
20971127 ATACTTGTGTTGTTGCAAGTATGTTACAGGATCATCTGGAATTGGATTTTGACCTAATCTCTGAC
1 ATACTTGTGTTGTTGCAAGTATGTCACAAGATCATCTGAAATTGGATTCTAACATAATCTCTAAC
* * *
20971192 ATTGTCTTACTTATTTTGAA
66 ATTATCTTACCTATGTTGAA
* * *
20971212 ATACTTGTGTTGTTGCAGGTATGTCACAAGATCA-CTCGAAATTGGATTCTAAGATGATCTCTAA
1 ATACTTGTGTTGTTGCAAGTATGTCACAAGATCATCT-GAAATTGGATTCTAACATAATCTCTAA
20971276 CATTATCTTACCTATGTTGAA
65 CATTATCTTACCTATGTTGAA
20971297 A
1 A
20971298 GCGAGTCCTA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
84 2 0.03
85 70 0.97
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (85 bp):
ATACTTGTGTTGTTGCAAGTATGTCACAAGATCATCTGAAATTGGATTCTAACATAATCTCTAAC
ATTATCTTACCTATGTTGAA
Found at i:20972440 original size:5 final size:5
Alignment explanation
Indices: 20972432--20972483 Score: 59
Period size: 5 Copynumber: 9.8 Consensus size: 5
20972422 CCTAATCTAA
* *
20972432 AAAAG AAAAG AAAAAG AAAAAG AAAAAG AGAAG AGAAG AAAAG AAAAG
1 AAAAG AAAAG -AAAAG -AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG
20972480 AAAA
1 AAAA
20972484 AGCCCTAACC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 27 0.61
6 17 0.39
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:20972446 original size:6 final size:6
Alignment explanation
Indices: 20972431--20972485 Score: 60
Period size: 6 Copynumber: 9.0 Consensus size: 6
20972421 ACCTAATCTA
*
20972431 AAAAAG -AAAAG AAAAAG AAAAAG AAAAAG AGAAGAG AAGAAA- AGAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A-AAAAG AA-AAAG A-AAAAG
20972480 AAAAAG
1 AAAAAG
20972486 CCCTAACCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
5 5 0.12
6 28 0.67
7 9 0.21
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:20976830 original size:25 final size:26
Alignment explanation
Indices: 20976802--20976850 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20976792 CAACAAAACT
*
20976802 AAAATCTAACCT-AAAAAGAAAAGAG
1 AAAACCTAACCTAAAAAAGAAAAGAG
*
20976827 AAAACCTAATCTAAAAAAGAAAAG
1 AAAACCTAACCTAAAAAAGAAAAG
20976851 TAAAAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.65, C:0.12, G:0.10, T:0.12
Consensus pattern (26 bp):
AAAACCTAACCTAAAAAAGAAAAGAG
Found at i:20976855 original size:25 final size:24
Alignment explanation
Indices: 20976796--20976855 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
20976786 AGGAAACAAC
* *
20976796 AAAACTAAAATCTAACCTAAAAAG
1 AAAAGTAAAACCTAACCTAAAAAG
* *
20976820 AAAAGAGAAAACCTAATCTAAAAAAG
1 AAAAG-TAAAACCTAACCT-AAAAAG
20976846 AAAAGTAAAA
1 AAAAGTAAAA
20976856 GAAAAGAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 4 0.14
25 14 0.48
26 11 0.38
ACGTcount: A:0.67, C:0.12, G:0.08, T:0.13
Consensus pattern (24 bp):
AAAAGTAAAACCTAACCTAAAAAG
Found at i:20979014 original size:79 final size:75
Alignment explanation
Indices: 20978915--20979201 Score: 307
Period size: 75 Copynumber: 3.8 Consensus size: 75
20978905 TTTTCATTGC
* * * * *
20978915 TTTTA-TTTTTTGGTAAATTGTAAATAAGTATATATTATTGATGTAAAATATAGTAGGATATAAT
1 TTTTATTTTTTTCGTAGATTGTAAATAAGTATATATTATTGATATAAAATACAATA-GATATAAT
20978979 ATAAACAATTTTT
65 ATAAA-AA-TTTT
* * *
20978992 TTTTCATTTTTTTCGTATATTGTAAATAAGTATATATTATTGATATAAAATACAATA-AAATAAA
1 TTTT-ATTTTTTTCGTAGATTGTAAATAAGTATATATTATTGATATAAAATACAATAGATATAAT
* *
20979056 ATACAAATAATT
65 ATAAAAAT-TTT
** * *
20979068 TTTTAAATTTTTCGTAGATTGTAAATAAATATATATTATTGATATAAAATACAATAGAATACAAT
1 TTTTATTTTTTTCGTAGATTGTAAATAAGTATATATTATTGATATAAAATACAATAG-ATATAAT
*
20979133 ACAAATAA-TTT
65 ATAAA-AATTTT
* *
20979144 TTCTATTGTTTTT-GTAGATTGTAAATAAG--TATATTATTGATGTAAAATACAATAGATA
1 TTTTATT-TTTTTCGTAGATTGTAAATAAGTATATATTATTGATATAAAATACAATAGATA
20979202 AACTTTTTTT
Statistics
Matches: 179, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
73 3 0.02
74 25 0.14
75 49 0.27
76 29 0.16
77 25 0.14
78 3 0.02
79 45 0.25
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (75 bp):
TTTTATTTTTTTCGTAGATTGTAAATAAGTATATATTATTGATATAAAATACAATAGATATAATA
TAAAAATTTT
Found at i:20984138 original size:16 final size:16
Alignment explanation
Indices: 20984119--20984152 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20984109 AAATGAATGT
* *
20984119 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
20984135 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
20984151 AT
1 AT
20984153 TGGATATTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:20990109 original size:12 final size:13
Alignment explanation
Indices: 20990069--20990110 Score: 68
Period size: 14 Copynumber: 3.2 Consensus size: 13
20990059 ATTTCAACTT
20990069 TTATATATTATTA
1 TTATATATTATTA
20990082 TGTATATATTATTA
1 T-TATATATTATTA
20990096 TT-TATATTATTA
1 TTATATATTATTA
20990108 TTA
1 TTA
20990111 AGTTTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 12 0.44
13 2 0.07
14 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATATATTATTA
Found at i:20996862 original size:50 final size:50
Alignment explanation
Indices: 20996803--20997366 Score: 341
Period size: 50 Copynumber: 11.3 Consensus size: 50
20996793 GTAGTGAAAC
20996803 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * * * ** *
20996853 AGATTAAAGCCAAAAT-AGCGAATCTTAC-TCCCCAAGCGA-TGCAGCGAAAC
1 AGATTAAAGCC-ACATCGGTGAATCTTGCTTCCCC-GGC-ATTGCAGTTAAAA
* * *
20996903 AGATTAAAGCCACAACGGTGAATCTTGTTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * * * * * * * ** *
20996953 AGATTAAAGCTACAGCAGCGAATCTTACCTCTCAGGCAGTGCA-ACAGAAT
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTA-AAA
* * * ** *
20997003 AGATTAAAGCCACAACGTTGAATCTTGCCTCCATGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * * * * *** *
20997053 AGATTAAAGCTACAAT-AGCGAATCTTACTTCCCAGGCGA-TGTAGCGGAAC
1 AGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGGC-ATTGCAGTTAAAA
* *
20997103 ATATTAAAGCCACAACGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * * * * ** * **
20997153 AGACTAAAGCCACATCGGCGAGTGTTACTTCCCTGGCAACGCAGTGAAGC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * *
20997203 AGACTAAAGCCACAAT-GTTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * * * * * * ** * **
20997253 ATACTAAAGCCACAGCGGCGAGTGTTACTTCCCTGGCAACGCAGTGAAGC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* * * *
20997303 AGACTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
* *
20997353 GGATTAAAGTCACA
1 AGATTAAAGCCACA
20997367 ATGACGAATC
Statistics
Matches: 368, Mismatches: 132, Indels: 28
0.70 0.25 0.05
Matches are distributed among these distances:
49 12 0.03
50 342 0.93
51 14 0.04
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
Found at i:20996947 original size:100 final size:100
Alignment explanation
Indices: 20996774--20997462 Score: 638
Period size: 100 Copynumber: 6.9 Consensus size: 100
20996764 AGAATTACAG
* * * *
20996774 ATCTTA-TCTCCCAAGCGATGTAGTGAAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
1 ATCTTACTC-CCCAGGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCG
* *
20996838 GCATTGCAGTTAAAAAGATTAAAGCCAAAATAGCGA
65 ACATTGCAGTTAAAAAGATTAAAGCCACAATAGCGA
* *
20996874 ATCTTACTCCCCAAGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGTTTCCCCGA
1 ATCTTACTCCCCAGGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGA
* **
20996939 CATTGCAGTTAAAAAGATTAAAGCTACAGCAGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAATAGCGA
* * * * * *
20996974 ATCTTAC-CTCTCAGGC-AGTGCAAC-AGAATAGATTAAAGCCACAACGTTGAATCTTGCCTCCA
1 ATCTTACTC-CCCAGGCGA-TGCAGCGA-AACAGATTAAAGCCACAACGGTGAATCTTGCTTCCC
* *
20997036 TGACATTGCAGTTAAAAAGATTAAAGCTACAATAGCGA
63 CGACATTGCAGTTAAAAAGATTAAAGCCACAATAGCGA
* * * * *
20997074 ATCTTACTTCCCAGGCGATGTAGCGGAACATATTAAAGCCACAACGGTGAATCTTGCTTCCCCGG
1 ATCTTACTCCCCAGGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGA
* *
20997139 CATTGCAGTTAAAAAGACTAAAGCCAC-ATCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAAT-AGCGA
* * * * * * * * * * *
20997174 GTGTTACTTCCCTGGCAACGCAGTGAAGCAGACTAAAGCCACAATGTTGAATCTTGCTTCCCCGA
1 ATCTTACTCCCCAGGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGA
* * * ***
20997239 CATTGTAGTTAAAAATACTAAAGCCACAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAATAGCGA
* * * * * * * * * *
20997274 GTGTTACTTCCCTGGCAACGCAGTGAAGCAGACTAAAGCCACAACGGTGAATCTTGCTTTCCCGA
1 ATCTTACTCCCCAGGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGA
* *
20997339 CATTGCAGTTAAAAGGATTAAAGTCACAAT-GACGA
66 CATTGCAGTTAAAAAGATTAAAGCCACAATAG-CGA
* * * * * * * * *
20997374 ATCTTACTCTCTCA-GCTAGTGCA-CTAGAGCAGATTGAAGCTACAACGGCGAATCTTGATTCCT
1 ATCTTACTC-CCCAGGCGA-TGCAGCGA-AACAGATTAAAGCCACAACGGTGAATCTTGCTTCCC
** *
20997437 CGACATCACAGTTAAACAGATTAAAG
63 CGACATTGCAGTTAAAAAGATTAAAG
20997463 TAACGTGTTA
Statistics
Matches: 493, Mismatches: 83, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
99 6 0.01
100 428 0.87
101 59 0.12
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (100 bp):
ATCTTACTCCCCAGGCGATGCAGCGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCCACAATAGCGA
Found at i:21000191 original size:5 final size:6
Alignment explanation
Indices: 21000140--21000196 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
21000130 ACCAATTTAG
* * * *
21000140 TTTATC TTTATT TTTCTT TTTATT TCTATT TGTAGTGT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-T-T TTTATT TTTATT
21000190 TTTATT T
1 TTTATT T
21000197 GAATTCCAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
6 37 0.86
7 2 0.05
8 4 0.09
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:21000229 original size:3 final size:3
Alignment explanation
Indices: 21000221--21000289 Score: 111
Period size: 3 Copynumber: 23.0 Consensus size: 3
21000211 TTTTAATCCC
***
21000221 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT CCC ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
21000269 ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
21000290 TCTTCTTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:21000405 original size:23 final size:22
Alignment explanation
Indices: 21000378--21000437 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
21000368 TGACATTACC
*
21000378 TTTAAACTTATTATTATTATAAT
1 TTTAAA-TTATTATTACTATAAT
* *
21000401 TTTAAAATGTAATA-TACTATTAT
1 TTT-AAAT-TATTATTACTATAAT
21000424 TTTAAATTATTATT
1 TTTAAATTATTATT
21000438 CACATGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
21 4 0.13
22 5 0.17
23 14 0.47
24 7 0.23
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTAAATTATTATTACTATAAT
Found at i:21004748 original size:6 final size:6
Alignment explanation
Indices: 21004716--21004796 Score: 76
Period size: 6 Copynumber: 13.7 Consensus size: 6
21004706 AGCTCAAAAA
* * * * **
21004716 AAAATC CAAATC CAAATC CAAATC AAAAAC AAAA-- AAGAAGA AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AA-AATC AAAATC
*
21004763 AAAATC AAAATC AAAATC AAAATC AAAATG AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
21004797 AGAAAAAAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
6 60 0.91
7 2 0.03
ACGTcount: A:0.68, C:0.16, G:0.04, T:0.12
Consensus pattern (6 bp):
AAAATC
Found at i:21005675 original size:22 final size:21
Alignment explanation
Indices: 21005634--21005694 Score: 50
Period size: 22 Copynumber: 2.7 Consensus size: 21
21005624 GAAAAATAAA
* *
21005634 AAAAATAAAAAAAGAGAAAAACG
1 AAAAAT-AAAAATGA-AAAAAGG
* *
21005657 GAAAAATAAAAATGAAAAAATG
1 AAAAA-TAAAAATGAAAAAAGG
21005679 AAAAAGTAAAAATGAA
1 AAAAA-TAAAAATGAA
21005695 GAGGCTAAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 20 0.62
23 11 0.34
24 1 0.03
ACGTcount: A:0.75, C:0.02, G:0.13, T:0.10
Consensus pattern (21 bp):
AAAAATAAAAATGAAAAAAGG
Found at i:21005689 original size:14 final size:15
Alignment explanation
Indices: 21005634--21005694 Score: 54
Period size: 14 Copynumber: 4.1 Consensus size: 15
21005624 GAAAAATAAA
* *
21005634 AAAAATAAAAAAAGAG
1 AAAAATGAAAAAA-TG
* *
21005650 AAAAACGGAAAAAT-
1 AAAAATGAAAAAATG
21005664 AAAAATGAAAAAATG
1 AAAAATGAAAAAATG
*
21005679 AAAAA-GTAAAAATG
1 AAAAATGAAAAAATG
21005693 AA
1 AA
21005695 GAGGCTAAGG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 22 0.59
15 5 0.14
16 10 0.27
ACGTcount: A:0.75, C:0.02, G:0.13, T:0.10
Consensus pattern (15 bp):
AAAAATGAAAAAATG
Found at i:21007069 original size:44 final size:44
Alignment explanation
Indices: 21006987--21007362 Score: 210
Period size: 44 Copynumber: 8.1 Consensus size: 44
21006977 ACCTTCAAGT
* * * *
21006987 TGGAGCAGATTGAAAGCCAGAAATCTTATCTCCTTGAGATTACAG
1 TGGAGTAGATTG-AAGCTAGAAATCCTATCTCCCTGAGATTACAG
* *
21007032 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
1 TGGAGTAGATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAG
** ** * *
21007076 TGGAGCGGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAG
1 TGGAGTAGATTGAAGCTAGAA--ATCCTATCTCCCTGAGA-TTACAG
* *
21007120 TAGAGTAGATCACATCAGATTCAAGCCAGAAAT-CTATCTCCCTGAGATTACAG
1 T-G-G-AG------T-AGATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAG
* *
21007173 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
1 TGGAGTAGATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAG
* ** * *
21007217 TGGA-TCGGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAG
1 TGGAGT-AGATTGAAGCTAGAA--ATCCTATCTCCCTGAGA-TTACAG
* *
21007261 TAGAGTAGATCGCATTAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAG
1 T---G--GA--G---TAGATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAG
* * *
21007315 TGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAG
1 TGGAGTAGATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAG
21007359 TGGA
1 TGGA
21007363 ATGGATTAAA
Statistics
Matches: 254, Mismatches: 42, Indels: 71
0.69 0.11 0.19
Matches are distributed among these distances:
42 2 0.01
43 25 0.10
44 142 0.56
45 11 0.04
46 1 0.00
47 4 0.02
49 4 0.02
50 2 0.01
51 2 0.01
52 1 0.00
53 16 0.06
54 32 0.13
55 8 0.03
56 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
TGGAGTAGATTGAAGCTAGAAATCCTATCTCCCTGAGATTACAG
Found at i:21007267 original size:141 final size:142
Alignment explanation
Indices: 21007000--21007420 Score: 747
Period size: 141 Copynumber: 3.0 Consensus size: 142
21006990 AGCAGATTGA
*
21007000 AAGCCAGAAATCTTATCTCCTTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCC
1 AAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCC
*
21007065 TGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
66 TGAGATTACAGTGGATCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
*
21007130 CACATCAGATTC
131 CGCATCAGATTC
21007142 AAGCCAGAAATC-TATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCC
1 AAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCC
21007206 TGAGATTACAGTGGATCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
66 TGAGATTACAGTGGATCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
* *
21007271 CGCATTAGATTG
131 CGCATCAGATTC
* *
21007283 AAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
1 AAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCC
*
21007348 TGAGATTATAGTGGAAT-GGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
66 TGAGATTACAGTGG-ATCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA
21007412 TCGCATCAG
130 TCGCATCAG
21007421 GTCTTATCTC
Statistics
Matches: 268, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
141 136 0.51
142 130 0.49
143 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
AAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCC
TGAGATTACAGTGGATCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
CGCATCAGATTC
Found at i:21007577 original size:50 final size:50
Alignment explanation
Indices: 21007496--21008148 Score: 267
Period size: 50 Copynumber: 13.2 Consensus size: 50
21007486 GCAGTGGAAC
* * * * *
21007496 AGATTAAAGCCACAAC-GATGAATTTTGCCTCCCTGACATTGCAATTAAAA
1 AGATTAAAGCTACAGCAG-TGAATCTTACCTCCCTGACATTGCAGTTAAAA
* ** * ** *
21007546 AGATTAAAGCTACAGCAGCGAATCTTACCTCCCTGGTAGTGCAGTGGAAC
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
* * * *
21007596 AGATTAAAGCCACATCGGTGAATCTTGCCTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
* * *** *
21007646 AGATTAAAGCTACAGCAGTGAATCTTA-CTCCCCAGGCGA-TGCAGCGGAAT
1 AGATTAAAGCTACAGCAGTGAATCTTACCT-CCCTGAC-ATTGCAGTTAAAA
* * * * *
21007696 AGATTAAAGCCACATCGGTGAATCTTGCCTCCCTAACATTGCAGTTAAAA
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
* * * * * ** ** **
21007746 AGATTAAAGCTACAACAGCGAATCTTACTTCTC-AAGCGGTGCAGTGGAGC
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGA-CATTGCAGTTAAAA
* * * * * * *
21007796 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG--A---CA-TT--AC
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
* * * * * * * * ** *
21007838 AGATTAAAGCCACAGCGGCGAATCCTACTTCCTTGGCGA-TGCCGTGGAAC
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGAC-ATTGCAGTTAAAA
* * * * * ***
21007888 AGATTAAAGCCACAACGGTGAATCTT-GCTTCCTCGGTGTTGCAGTTAAAA
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCT-GACATTGCAGTTAAAA
* * * * ** ** *
21007938 AGATTAAAGCTACAACAGCGAATCTTACCTCCCAGACAGTATAGTGGAAC
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
* * * * * *
21007988 AGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAAATTGCAGTTAAAA
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
* * * * * * * * * *
21008038 TGATTAAAGCTATAACGGCGAATCTTACATTCCCAGGCAGTGCAG-TAAAGC
1 AGATTAAAGCTACAGCAGTGAATCTTAC-CTCCCTGACATTGCAGTTAAA-A
* * * * *
21008089 AGATTAAAGCCACAACGGTGAATCTTGCTTCCAC-GACATTGCAGTTAAAA
1 AGATTAAAGCTACAGCAGTGAATCTTACCTCC-CTGACATTGCAGTTAAAA
21008139 AGATTAAAGC
1 AGATTAAAGC
21008149 CACAATGGCG
Statistics
Matches: 445, Mismatches: 136, Indels: 44
0.71 0.22 0.07
Matches are distributed among these distances:
42 30 0.07
44 1 0.00
45 3 0.01
47 1 0.00
48 1 0.00
49 8 0.02
50 355 0.80
51 46 0.10
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCTACAGCAGTGAATCTTACCTCCCTGACATTGCAGTTAAAA
Found at i:21007644 original size:100 final size:100
Alignment explanation
Indices: 21007479--21008166 Score: 774
Period size: 100 Copynumber: 7.0 Consensus size: 100
21007469 CTTACCACTT
* * * *
21007479 AGGCGGTGCAGTGGAACAGATTAAAGCCACAACGATGAATTTTGCCTCCCTGACATTGCAATTAA
1 AGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTAA
*
21007544 AAAGATTAAAGCTACAGCAGCGAATCTTACCTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
* * *
21007579 TGGTAGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCCTCCCTGACATTGCAGTTAA
1 AGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTAA
* *
21007644 AAAGATTAAAGCTACAGCAGTGAATCTTA-CTCCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACCT-CCC
* * * *
21007679 AGGC-GATGCAGCGGAATAGATTAAAGCCACATCGGTGAATCTTGCCTCCCTAACATTGCAGTTA
1 AGGCAG-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTA
* *
21007743 AAAAGATTAAAGCTACAACAGCGAATCTTACTTCTC
65 AAAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
* * * * * *
21007779 AAGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG--A---CA-TT--
1 AGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTAA
* * * * * * *
21007836 ACAGATTAAAGCCACAGCGGCGAATCCTACTTCCT
66 AAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
* * * ***
21007871 TGGC-GATGCCGTGGAACAGATTAAAGCCACAACGGTGAATCTTG-CTTCCTCGGTGTTGCAGTT
1 AGGCAG-TGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCT-GACATTGCAGTT
21007934 AAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
64 AAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
* ** * *
21007971 AGACAGTATAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAAATTGCAGTTAA
1 AGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTAA
* * * *
21008036 AATGATTAAAGCTATAACGGCGAATCTTACATTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTAC-CTCCC
* *
21008072 AGGCAGTGCAGT-AAAGCAGATTAAAGCCACAACGGTGAATCTTGCTTCCAC-GACATTGCAGTT
1 AGGCAGTGCAGTGGAA-CAGATTAAAGCCACAACGGTGAATCTTGCCTCC-CTGACATTGCAGTT
* **
21008135 AAAAAGATTAAAGCCACAATGGCGAATCTTAC
64 AAAAAGATTAAAGCTACAACAGCGAATCTTAC
21008167 TTTCCAAATG
Statistics
Matches: 497, Mismatches: 72, Indels: 37
0.82 0.12 0.06
Matches are distributed among these distances:
91 4 0.01
92 66 0.13
94 2 0.00
95 2 0.00
97 2 0.00
98 3 0.01
99 3 0.01
100 324 0.65
101 91 0.18
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (100 bp):
AGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCTGACATTGCAGTTAA
AAAGATTAAAGCTACAACAGCGAATCTTACCTCCC
Found at i:21007999 original size:292 final size:292
Alignment explanation
Indices: 21007546--21008137 Score: 802
Period size: 292 Copynumber: 2.0 Consensus size: 292
21007536 GCAATTAAAA
* * * *
21007546 AGATTAAAGCTACAGCAGCGAATCTTACCTCCCTGGTAGTGCAGTGGAACAGATTAAAGCCACAT
1 AGATTAAAGCCACAGCAGCGAATCCTACCTCCCTGGGAGTGCAGTGGAACAGATTAAAGCCACAA
* *
21007611 CGGTGAATCTTGCCTCCCTGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGTGAATCTTACTC
66 CGGTGAATCTTGCCTCCCTGACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTC
* * * *
21007676 CCCAGGCGATGCAGCGGAATAGATTAAAGCCACATCGGTGAATCTTGCCTCCCT-AACATTGCAG
131 CCCAGACGAT-CAGCGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAA-ATTGCAG
* * **
21007740 TTAAAAAGATTAAAGCTACAACAGCGAATCTTAC-TTCTCAAGCGGTGCAGTGGAGCAGATTAAA
194 TTAAAAAGATTAAAGCTACAACAGCGAATCTTACATTCCCAAGCAGTGCAGTAAAGCAGATTAAA
* *
21007804 GCCACATCGGTGAATCTTGCTTCCCCGACATTAC
259 GCCACAACGGTGAATCTTGCTTCCACGACATTAC
* * * *
21007838 AGATTAAAGCCACAGCGGCGAATCCTACTTCCTTGGCGA-TGCCGTGGAACAGATTAAAGCCACA
1 AGATTAAAGCCACAGCAGCGAATCCTACCTCCCTGG-GAGTGCAGTGGAACAGATTAAAGCCACA
* ***
21007902 ACGGTGAATCTTG-CTTCCTCGGTGTTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
65 ACGGTGAATCTTGCCTCCCT-GACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
*
21007966 -CTCCCAGACAGTAT-AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAAATTG
129 TC-CCCAGAC-G-ATCAGCGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAAATTG
* * * *
21008029 CAGTTAAAATGATTAAAGCTATAACGGCGAATCTTACATTCCCAGGCAGTGCAGTAAAGCAGATT
191 CAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACATTCCCAAGCAGTGCAGTAAAGCAGATT
*
21008094 AAAGCCACAACGGTGAATCTTGCTTCCACGACATTGC
256 AAAGCCACAACGGTGAATCTTGCTTCCACGACATTAC
21008131 AG-TTAAA
1 AGATTAAA
21008138 AAGATTAAAG
Statistics
Matches: 263, Mismatches: 30, Indels: 14
0.86 0.10 0.05
Matches are distributed among these distances:
291 6 0.02
292 193 0.73
293 62 0.24
294 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (292 bp):
AGATTAAAGCCACAGCAGCGAATCCTACCTCCCTGGGAGTGCAGTGGAACAGATTAAAGCCACAA
CGGTGAATCTTGCCTCCCTGACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTC
CCCAGACGATCAGCGGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAAATTGCAGTT
AAAAAGATTAAAGCTACAACAGCGAATCTTACATTCCCAAGCAGTGCAGTAAAGCAGATTAAAGC
CACAACGGTGAATCTTGCTTCCACGACATTAC
Found at i:21008115 original size:101 final size:100
Alignment explanation
Indices: 21007885--21008168 Score: 383
Period size: 101 Copynumber: 2.8 Consensus size: 100
21007875 GATGCCGTGG
***
21007885 AACAGATTAAAGCCACAACGGTGAATCTTGCTTCC-TCGGTGTTGCAGTTAAAAAGATTAAAGCT
1 AACAGATTAAAGCCACAACGGTGAATCTTGCTTCCAT-GAAATTGCAGTTAAAAAGATTAAAGCT
* * * *
21007949 ACAACAGCGAATCTTACCTCCCAGACAGTATAGTGG
65 ACAACGGCGAATCTTACTTCCCAGACAGTACAGTGA
* *
21007985 AACAGATTAAAGCCACAACGGTGAATCTTGCCTCCATGAAATTGCAGTTAAAATGATTAAAGCTA
1 AACAGATTAAAGCCACAACGGTGAATCTTGCTTCCATGAAATTGCAGTTAAAAAGATTAAAGCTA
* * *
21008050 TAACGGCGAATCTTACATTCCCAGGCAGTGCAGT-A
66 CAACGGCGAATCTTAC-TTCCCAGACAGTACAGTGA
* * *
21008085 AAGCAGATTAAAGCCACAACGGTGAATCTTGCTTCCACGACATTGCAGTTAAAAAGATTAAAGCC
1 AA-CAGATTAAAGCCACAACGGTGAATCTTGCTTCCATGAAATTGCAGTTAAAAAGATTAAAGCT
*
21008150 ACAATGGCGAATCTTACTT
65 ACAACGGCGAATCTTACTT
21008169 TCCAAATGTT
Statistics
Matches: 162, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
100 76 0.47
101 86 0.53
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (100 bp):
AACAGATTAAAGCCACAACGGTGAATCTTGCTTCCATGAAATTGCAGTTAAAAAGATTAAAGCTA
CAACGGCGAATCTTACTTCCCAGACAGTACAGTGA
Found at i:21009591 original size:5 final size:6
Alignment explanation
Indices: 21009540--21009596 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
21009530 ACCAATTTAG
* * * *
21009540 TTTATC TTTATT TTTCTT TTTATT TCTATT TGTAGTGT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-T-T TTTATT TTTATT
21009590 TTTATT T
1 TTTATT T
21009597 GAATTCCAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
6 37 0.86
7 2 0.05
8 4 0.09
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:21009630 original size:3 final size:3
Alignment explanation
Indices: 21009622--21009687 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
21009612 TTTTAATCCC
***
21009622 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT CCC ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
21009670 ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
21009688 TCTTCTTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:21009803 original size:23 final size:22
Alignment explanation
Indices: 21009776--21009835 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
21009766 TGACATTACC
*
21009776 TTTAAACTTATTATTATTATAAT
1 TTTAAA-TTATTATTACTATAAT
* *
21009799 TTTAAAATGTAATA-TACTATTAT
1 TTT-AAAT-TATTATTACTATAAT
21009822 TTTAAATTATTATT
1 TTTAAATTATTATT
21009836 CACATGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
21 4 0.13
22 5 0.17
23 14 0.47
24 7 0.23
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTAAATTATTATTACTATAAT
Found at i:21011097 original size:15 final size:15
Alignment explanation
Indices: 21011073--21011108 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
21011063 GGTTTCGACA
*
21011073 ATTATCATTAGAATT
1 ATTATTATTAGAATT
*
21011088 ATTATTATTAGTATT
1 ATTATTATTAGAATT
21011103 ATTATT
1 ATTATT
21011109 TACATTAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.56
Consensus pattern (15 bp):
ATTATTATTAGAATT
Found at i:21011405 original size:12 final size:13
Alignment explanation
Indices: 21011365--21011406 Score: 68
Period size: 14 Copynumber: 3.2 Consensus size: 13
21011355 ATTTCAACTT
21011365 TTATATATTATTA
1 TTATATATTATTA
21011378 TGTATATATTATTA
1 T-TATATATTATTA
21011392 TT-TATATTATTA
1 TTATATATTATTA
21011404 TTA
1 TTA
21011407 AGTTTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 12 0.44
13 2 0.07
14 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (13 bp):
TTATATATTATTA
Found at i:21016855 original size:18 final size:18
Alignment explanation
Indices: 21016833--21016868 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
21016823 TAAGTTATAT
*
21016833 TAAAAATTTTAAT-TTAA
1 TAAAAACTTTAATGTTAA
21016850 TAAAAACTTTAATGTTAA
1 TAAAAACTTTAATGTTAA
21016868 T
1 T
21016869 GGTAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
TAAAAACTTTAATGTTAA
Found at i:21018436 original size:19 final size:19
Alignment explanation
Indices: 21018394--21018436 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
21018384 TTTTTTATTT
*
21018394 AATA-TTAATATAACTATA
1 AATATTTAATATAAATATA
**
21018412 TTTATTTAATATAAATATA
1 AATATTTAATATAAATATA
21018431 AATATT
1 AATATT
21018437 AAATTTATTG
Statistics
Matches: 19, Mismatches: 5, Indels: 1
0.76 0.20 0.04
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATTTAATATAAATATA
Found at i:21025459 original size:20 final size:20
Alignment explanation
Indices: 21025434--21025474 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
21025424 GTAAGCATGA
21025434 ACCTAAGTAAATTTGAAGCT
1 ACCTAAGTAAATTTGAAGCT
21025454 ACCTAAGTAAATTTGAAGCT
1 ACCTAAGTAAATTTGAAGCT
21025474 A
1 A
21025475 TCTTCTCCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (20 bp):
ACCTAAGTAAATTTGAAGCT
Found at i:21025941 original size:56 final size:56
Alignment explanation
Indices: 21025829--21025942 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
21025819 TTACGAGCTC
* ** * *
21025829 AATCTTTGGTTTTGAGGAGATTGTTAGCCTCTACACAAATGGTGAGAACTTCGAAG
1 AATCTTTGGTTTTGAGGAGATTATTAGCCTCTACACAAATGACGAGAACATAGAAG
* *
21025885 AATCTTTGGTTTTGAGGATATTATTAGCCTCTACACAAATGACGAGGACATAGAAG
1 AATCTTTGGTTTTGAGGAGATTATTAGCCTCTACACAAATGACGAGAACATAGAAG
21025941 AA
1 AA
21025943 ATAAAGAAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (56 bp):
AATCTTTGGTTTTGAGGAGATTATTAGCCTCTACACAAATGACGAGAACATAGAAG
Found at i:21031014 original size:7 final size:7
Alignment explanation
Indices: 21031002--21031036 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
21030992 AAATTTGTGT
21031002 GGTTTAG
1 GGTTTAG
21031009 GGTTTAG
1 GGTTTAG
21031016 GGTTTAG
1 GGTTTAG
*
21031023 GGTTCAG
1 GGTTTAG
21031030 GGTTTAG
1 GGTTTAG
21031037 AAAAAGAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.14, C:0.03, G:0.43, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:21034649 original size:15 final size:15
Alignment explanation
Indices: 21034626--21034658 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
21034616 TTTTTATGCC
21034626 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
21034641 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
21034656 ATT
1 ATT
21034659 ATAGCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:21040870 original size:26 final size:26
Alignment explanation
Indices: 21040841--21040893 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21040831 CTATGCTCAG
21040841 AACCAACTTTATTCTTATCCATTGTT
1 AACCAACTTTATTCTTATCCATTGTT
21040867 AACCAACTTTATTCTTATCCATTGTT
1 AACCAACTTTATTCTTATCCATTGTT
21040893 A
1 A
21040894 TGACCTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.04, T:0.45
Consensus pattern (26 bp):
AACCAACTTTATTCTTATCCATTGTT
Found at i:21041737 original size:44 final size:43
Alignment explanation
Indices: 21041684--21042443 Score: 470
Period size: 44 Copynumber: 17.5 Consensus size: 43
21041674 AGATGGCAAG
21041684 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAA
* * *
21041728 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT-A-A
* * * * *
21041772 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCAACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-TAA
* *
21041812 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCATAA
* * * * *
21041856 TCTTATC-CTCTTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-AG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCATAA
* *
21041901 TCTTATCTCCCTGAAGCTGTAGTGGAGCAGATTAAAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAA
* * *
21041945 TCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACC-TCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT-A-A
* * * * *** * *
21041989 TCTTATCTCTCTGAAGTTGCAG-AGAACAAATCGCA-TC-TAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAA
* * * *
21042029 TTTTATCTCTCTGAAGTTGCAGTGGAGCAGAATAAGTAAG-CA-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTA--AAGCCATAA
* * * *
21042073 TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-AG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCATAA
21042118 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAA
* * * *
21042162 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATA-A
* * *** * *
21042206 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-TAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAA
* * * *
21042246 TTTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAG-CA-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCATAA
* * * * *
21042290 TCTTATC-CTCCTGAAGTTGTAGTGGGGCAGACTGAAGATGGCA-AG
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCATAA
* * *
21042335 TCGTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CCATAA
* * * * *
21042379 TCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGCCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATA-A
*
21042423 TCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCA
21042444 AAGAGTAGAT
Statistics
Matches: 568, Mismatches: 99, Indels: 98
0.74 0.13 0.13
Matches are distributed among these distances:
40 62 0.11
41 22 0.04
42 18 0.03
43 41 0.07
44 330 0.58
45 90 0.16
46 4 0.01
47 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAA
Found at i:21041925 original size:89 final size:86
Alignment explanation
Indices: 21041810--21042363 Score: 404
Period size: 89 Copynumber: 6.4 Consensus size: 86
21041800 GATCGCAACT
*
21041810 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCTTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
*
21041875 CAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGA-TGAAGATGGCA
* * * * * *
21041899 AGTCTTATCTCCCTGAAGCTGTAGTGGAGCAGA-TTA-AAGCCGATAATCCTATCTCCCTAAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCT-CCTGAAGT
* * ***
21041962 TGCAGTGGAGCAGATTAAAACCTC-
62 TGCAGTGGAGCAGATGAAGATGGCA
* * * * * * * * *
21041986 AGATCTTATCTCTCTGAAGTTGCAG-AGAACA-AAT-CGCATCTAGTTTTATCTCTCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTC-CTGAAGTTG
*
21042048 CAGTGGAGCAGAAT-AAG-TAAGCA
64 CAGTGGAGCAG-ATGAAGAT-GGCA
* *
21042071 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCT-CCTGAAGT
* *
21042135 TGCAGTGGAGCAGATTAA-A-GCCGA
62 TGCAGTGGAGCAGATGAAGATGGC-A
* * * * * *
21042159 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCTTATCTCTCTGAAGT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTC-CTGAAGT
* * *
21042223 TGCAG-AGAGCAGATCG--CAT--CT
62 TGCAGTGGAGCAGAT-GAAGATGGCA
* *
21042244 AGTTTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
* *
21042309 TAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGA-TGAAGATGGCA
*
21042333 AGTCGTATCTCCCTGAAGTTGCAGTGGAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
21042364 AATTAAAGTC
Statistics
Matches: 357, Mismatches: 70, Indels: 76
0.71 0.14 0.15
Matches are distributed among these distances:
83 2 0.01
84 96 0.27
85 19 0.05
86 13 0.04
87 25 0.07
88 55 0.15
89 145 0.41
90 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (86 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGGAGCAGATGAAGATGGCA
Found at i:21042046 original size:173 final size:172
Alignment explanation
Indices: 21041858--21042183 Score: 401
Period size: 173 Copynumber: 1.9 Consensus size: 172
21041848 TAAGCAAGTC
* * * *
21041858 TTATCCTCTTGAAGTTGCAGTGGGGCAGACTGAAG-ATGGCAAGTCTTAT-CTCCCTGAAGCTGT
1 TTATCCTCTTGAAGTTGCAGTGGAGCAGAAT-AAGTA-AGCAAGTCTTATCCT-CCTGAAGCTGC
* * *
21041921 AGTGGAGCAGATTAAAGCCGATAA-TCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACC-
63 AGTGGAGCAGACTAAAGACGACAAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCA
* *
21041984 TCAGATCTTATCTCTCTGAAGTTGCAGAGAACAAATCGCATCTAGTT
128 T-A-ATCCTATCTCCCTGAAGTTGCAGAGAACAAATCGCATCTAGTT
*
21042031 TTAT-CTCTCTGAAGTTGCAGTGGAGCAGAATAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAG
1 TTATCCTCT-TGAAGTTGCAGTGGAGCAGAATAAGTAAGCAAGTCTTATCCTCCTGAAGCTGCAG
* * * * * * *
21042095 TGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
65 TGGAGCAGACTAAAGACGACAAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACC-AT
21042160 AATCCTATCTCCCTGAAGTTGCAG
129 AATCCTATCTCCCTGAAGTTGCAG
21042184 TGGAGCGGAT
Statistics
Matches: 130, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
172 44 0.34
173 84 0.65
174 1 0.01
175 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (172 bp):
TTATCCTCTTGAAGTTGCAGTGGAGCAGAATAAGTAAGCAAGTCTTATCCTCCTGAAGCTGCAGT
GGAGCAGACTAAAGACGACAAGTCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCATAA
TCCTATCTCCCTGAAGTTGCAGAGAACAAATCGCATCTAGTT
Found at i:21042047 original size:217 final size:217
Alignment explanation
Indices: 21041672--21042497 Score: 1409
Period size: 217 Copynumber: 3.8 Consensus size: 217
21041662 GAAGCAGATC
21041672 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
*
21041737 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
66 CCTAAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
21041802 TCGCAACTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCT
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
21041867 TGAAGTTGCAGTGGGGCAGACT
196 TGAAGTTGCAGTGGGGCAGACT
* *
21041889 GAAGATGGCAAGTCTTATCTCCCTGAAGCTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
* * *
21041954 CCTAAAGTTGCAGTGGAGCAGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAACAAA
66 CCTAAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* * *
21042019 TCGCATCTAGTTTTATCTCTCTGAAGTTGCAGTGGAGCAGAATAAGTAAGCAAGTCTTATCCTCC
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
21042084 TGAAGTTGCAGTGGGGCAGACT
196 TGAAGTTGCAGTGGGGCAGACT
21042106 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
* *
21042171 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
66 CCTAAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
21042236 TCGCATCTAGTTTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
*
21042301 TGAAGTTGTAGTGGGGCAGACT
196 TGAAGTTGCAGTGGGGCAGACT
* * *
21042323 GAAGATGGCAAGTCGTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTCGATAATCCTATCTC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
* * * * *
21042388 CCTAAAGTTGTAGTGGAGCGGATTAAAGCCTTAGATCTTATCTCTCTGAAGTTGCAAAGAGTAGA
66 CCTAAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* * *
21042453 TCGCATTTAGTCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTAA
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
21042498 AATAGCAAAT
Statistics
Matches: 574, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 574 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (217 bp):
GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
CCTAAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
TGAAGTTGCAGTGGGGCAGACT
Found at i:21044444 original size:15 final size:15
Alignment explanation
Indices: 21044421--21044453 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
21044411 TTTTTATGCC
21044421 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
21044436 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
21044451 ATT
1 ATT
21044454 ATAGCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:21050678 original size:19 final size:18
Alignment explanation
Indices: 21050609--21050674 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 18
21050599 TTTATTTTAT
21050609 TATA-TTAATATTAAAATTA
1 TATATTTAATA-T-AAATTA
* *
21050628 TACATTTTAATAGAATATTA
1 TATA-TTTAATATAA-ATTA
21050648 -ATATATTAATATAAATTA
1 TATAT-TTAATATAAATTA
21050666 TATATTTAA
1 TATATTTAA
21050675 ATATTTTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
18 9 0.24
19 19 0.50
20 4 0.11
21 6 0.16
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
TATATTTAATATAAATTA
Found at i:21050693 original size:33 final size:33
Alignment explanation
Indices: 21050651--21050714 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
21050641 AATATTAATA
21050651 TATTAATATAAATTATA-TATTTAAATATTTTGT
1 TATTAATATAAA-TATAGTATTTAAATATTTTGT
* * *
21050684 TATTTATATAAATATAGTTTTTAATTATTTT
1 TATTAATATAAATATAGTATTTAAATATTTT
21050715 AGTAAATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 4 0.15
33 23 0.85
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (33 bp):
TATTAATATAAATATAGTATTTAAATATTTTGT
Found at i:21050977 original size:13 final size:13
Alignment explanation
Indices: 21050959--21050983 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21050949 GAAGAGTAAT
21050959 AAAAACAAAAAAC
1 AAAAACAAAAAAC
21050972 AAAAACAAAAAA
1 AAAAACAAAAAA
21050984 AAGGAATACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACAAAAAAC
Found at i:21051477 original size:110 final size:110
Alignment explanation
Indices: 21051284--21051501 Score: 400
Period size: 110 Copynumber: 2.0 Consensus size: 110
21051274 ATTGAGTCAA
**
21051284 TTAGTTCGCTAAAGCGTATTATCCTCCTATTTATGGGTTGGGGAGGAACTATGAGTAATTCTAGA
1 TTAGTTCGCTAAAGCACATTATCCTCCTATTTATGGGTTGGGGAGGAACTATGAGTAATTCTAGA
*
21051349 CATTGTGTCAAAAAGAGCAGATATGATCAAAACATATAATGAGTC
66 CATTGTGTCAAAAAGAGCAGATATAATCAAAACATATAATGAGTC
*
21051394 TTAGTTCGCTAAAGCACATTATCCTCCTATTTATGGGTTGGGGAGGAACTATGAGTAGTTCTAGA
1 TTAGTTCGCTAAAGCACATTATCCTCCTATTTATGGGTTGGGGAGGAACTATGAGTAATTCTAGA
21051459 CATTGTGTCAAAAAGAGCAGATATAATCAAAACATATAATGAG
66 CATTGTGTCAAAAAGAGCAGATATAATCAAAACATATAATGAG
21051502 ATTATTAAAA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 104 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (110 bp):
TTAGTTCGCTAAAGCACATTATCCTCCTATTTATGGGTTGGGGAGGAACTATGAGTAATTCTAGA
CATTGTGTCAAAAAGAGCAGATATAATCAAAACATATAATGAGTC
Found at i:21057529 original size:20 final size:20
Alignment explanation
Indices: 21057501--21057556 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
21057491 CGCATAGTTA
* *
21057501 CATAACATATCATGT-GATGT
1 CATATCATATCATGTCGA-AT
*
21057521 CATATCATATCATATCGAAT
1 CATATCATATCATGTCGAAT
*
21057541 CATATCATAGCATGTC
1 CATATCATATCATGTC
21057557 CTACTCCCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
CATATCATATCATGTCGAAT
Found at i:21061334 original size:17 final size:17
Alignment explanation
Indices: 21061312--21061346 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
21061302 CAAGTGGAAG
21061312 TATGATTAATTAATTGT
1 TATGATTAATTAATTGT
21061329 TATGATTAATTAATTGT
1 TATGATTAATTAATTGT
21061346 T
1 T
21061347 TTGTAGGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (17 bp):
TATGATTAATTAATTGT
Found at i:21066343 original size:22 final size:22
Alignment explanation
Indices: 21066298--21066344 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
21066288 ACTGGTTGCT
*
21066298 ATGTCGCAACACGGAATGCCAA
1 ATGTCGCAACACGGAATGCAAA
*
21066320 ATGTCGCAACATTGGAA-GCAAA
1 ATGTCGCAACA-CGGAATGCAAA
21066342 ATG
1 ATG
21066345 GAGAAATCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (22 bp):
ATGTCGCAACACGGAATGCAAA
Found at i:21071915 original size:15 final size:15
Alignment explanation
Indices: 21071895--21071925 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
21071885 CTTCAGGTTC
21071895 CTTTTCAGTTAATTT
1 CTTTTCAGTTAATTT
21071910 CTTTTCAGTTAATTT
1 CTTTTCAGTTAATTT
21071925 C
1 C
21071926 CTTTAATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (15 bp):
CTTTTCAGTTAATTT
Found at i:21072569 original size:22 final size:22
Alignment explanation
Indices: 21072544--21072585 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
21072534 TGTTTTATCA
21072544 TAATATAAAT-TATTTACATTAC
1 TAAT-TAAATATATTTACATTAC
*
21072566 TAATTAATTATATTTACATT
1 TAATTAAATATATTTACATT
21072586 TAGATTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
TAATTAAATATATTTACATTAC
Found at i:21075158 original size:36 final size:36
Alignment explanation
Indices: 21075117--21075195 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
21075107 TCATATGATT
*
21075117 TACATA-CAACTCGCATAGTTCCTAGGGTCTGCATGA
1 TACATATCAA-TCGCATAGTTCCTAGGATCTGCATGA
* * *
21075153 TACATATGAATCGCATAGTTTCTAGGATTTGCATGA
1 TACATATCAATCGCATAGTTCCTAGGATCTGCATGA
*
21075189 TGCATAT
1 TACATAT
21075196 GACTCGTGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (36 bp):
TACATATCAATCGCATAGTTCCTAGGATCTGCATGA
Found at i:21075196 original size:36 final size:36
Alignment explanation
Indices: 21075127--21075197 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
21075117 TACATACAAC
*
21075127 TCGCATAGTTCCTAGGGTCTGCATGATACATATGAA
1 TCGCATAGTTCCTAGGATCTGCATGATACATATGAA
* * *
21075163 TCGCATAGTTTCTAGGATTTGCATGATGCATATGA
1 TCGCATAGTTCCTAGGATCTGCATGATACATATGA
21075198 CTCGTGTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (36 bp):
TCGCATAGTTCCTAGGATCTGCATGATACATATGAA
Found at i:21075280 original size:25 final size:25
Alignment explanation
Indices: 21075242--21075297 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
21075232 TGGTGGTTCA
*
21075242 CATGTAATACTCAACAAGTGACTCG
1 CATGTAATAATCAACAAGTGACTCG
21075267 CATGTAATAATCAACAAGTGACTCG
1 CATGTAATAATCAACAAGTGACTCG
21075292 CATGTA
1 CATGTA
21075298 CAACAAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (25 bp):
CATGTAATAATCAACAAGTGACTCG
Found at i:21082883 original size:14 final size:15
Alignment explanation
Indices: 21082859--21082891 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
21082849 TCCCAAGCGA
21082859 GGAAGGACCTTATGT
1 GGAAGGACCTTATGT
*
21082874 GGAA-GACCTTATTT
1 GGAAGGACCTTATGT
21082888 GGAA
1 GGAA
21082892 AAACGTCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.27
Consensus pattern (15 bp):
GGAAGGACCTTATGT
Found at i:21084250 original size:44 final size:44
Alignment explanation
Indices: 21084169--21084570 Score: 321
Period size: 44 Copynumber: 9.1 Consensus size: 44
21084159 GCAGATCAGT
* * * *
21084169 GAAGATAGCAGATCCTGTCTTTCTATATTGGTAGCGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* * *
21084214 GAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* *** * * *
21084258 GAAGAAAGCAGATCTTGTCTTCATGTATTAGCA-TGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* * * *
21084302 GAAGATAGCGGGTCTTGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* * *
21084346 GAAGATGCAGATCTTGTCTTTCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* **** * *
21084390 GAAGAAAT-CAGATCTTATCTTTATGTATTGG-CGTGAAGTAGATC
1 GAAG--ATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* * * * *
21084434 GAAGATAGTAGGTCATGTCTTCCTATATTGGTAG-GAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* * *
21084478 AAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
* * *** *
21084522 GAAGAAAGCAGAACTTGTCTTCATGTATTGG-AGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
21084566 GAAGA
1 GAAGA
21084571 CACCAGCCTT
Statistics
Matches: 284, Mismatches: 62, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.01
43 45 0.16
44 170 0.60
45 65 0.23
46 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (44 bp):
GAAGATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGATC
Found at i:21084416 original size:132 final size:131
Alignment explanation
Indices: 21084169--21084570 Score: 615
Period size: 132 Copynumber: 3.0 Consensus size: 131
21084159 GCAGATCAGT
* * * *
21084169 GAAGATAGCAGATCCTGTCTTTCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTATCTT
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
21084234 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTAGCATGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT-GCATGAAGTAG
21084299 ATC
129 ATC
* * *
21084302 GAAGATAGCGGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTT
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * * *
21084367 CCATACTGGTGGCGAAGTAGATCGAAGAAATCAGATCTTATCTTTATGTATTGGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT-GCATGAAGTAGA
21084432 TC
130 TC
* *
21084434 GAAGATAGTAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * * *
21084499 CCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGAACTTGTCTTCATGTATTGGAGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGCA-TGAAGTAGA
21084564 TC
130 TC
21084566 GAAGA
1 GAAGA
21084571 CACCAGCCTT
Statistics
Matches: 244, Mismatches: 24, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 213 0.87
133 30 0.12
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (131 bp):
GAAGATAGCAGGTCATGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGCATGAAGTAGAT
C
Found at i:21084740 original size:88 final size:88
Alignment explanation
Indices: 21084556--21085007 Score: 629
Period size: 88 Copynumber: 5.1 Consensus size: 88
21084546 GTATTGGAGT
* * * * * * *
21084556 GAAGTAGATCGAAGACACCAGCCTTGTCTTCTTGGGTTGCAGCGGAGCAGGCT-AAAATAGCAAA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGTAGCGGAGCAGGCTAAAAATAGCAGA
* *
21084620 TCTTGCCTTCTTGCACCGATAGC
66 TCTTGCCTTCCTGCACCGACAGC
* * * *
21084643 GAAGTAGATCAAAGACACCAGCTTTGCCTCCCTGAGTTGTAGCGGAGCAGGCTAAAAATAGAAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGTAGCGGAGCAGGCTAAAAATAGCAGA
*
21084708 TATTGCCTTCCTGCACCGACAGC
66 TCTTGCCTTCCTGCACCGACAGC
* *
21084731 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGCTATAAATAGCAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGTAGCGGAGCAGGCTAAAAATAGCAGA
21084796 TCTTGCCTTCCTGCACCGACAGC
66 TCTTGCCTTCCTGCACCGACAGC
* ** * * *
21084819 GAAACAGATCGAAGACACCAGCCTTGCCTCCCT-AGGTTACAGTGGAGCAGGTTAAAAAATAGCG
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGA-GTTGTAGCGGAGCAGGCT-AAAAATAGCA
*
21084883 GATCTTGCCTTCTTGCACCGACAGC
64 GATCTTGCCTTCCTGCACCGACAGC
* *
21084908 GAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGAGTTGTAGCGGAGCAGGTTAAAAATAGCAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGTAGCGGAGCAGGCTAAAAATAGCAGA
* *
21084973 TCTTGCTTTCCTGCACCGTCAGC
66 TCTTGCCTTCCTGCACCGACAGC
21084996 GAAGCAGATCGA
1 GAAGCAGATCGA
21085008 TAACCCCAAC
Statistics
Matches: 324, Mismatches: 37, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
87 46 0.14
88 199 0.61
89 78 0.24
90 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (88 bp):
GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGTAGCGGAGCAGGCTAAAAATAGCAGA
TCTTGCCTTCCTGCACCGACAGC
Found at i:21084935 original size:177 final size:175
Alignment explanation
Indices: 21084556--21085007 Score: 636
Period size: 177 Copynumber: 2.6 Consensus size: 175
21084546 GTATTGGAGT
* * * * * *
21084556 GAAGTAGATCGAAGACACCAGCCTTGTCTTCTTGGGTTGCAGCGGAGCAGGCTAAAATAGCAAAT
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGCTAAAATAGCAGAT
* * * * * **
21084621 CTTGCCTTCTTGCACCGATAGCGAAGTAGATCAAAGACACCAGCTTTGCCTCCCTGAGTTGTAGC
66 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTACAGC
21084686 GGAGCAGGCTAAAAATAGAAGATATTGCCTTCCTGCACCGACAGC
131 GGAGCAGGCTAAAAATAGAAGATATTGCCTTCCTGCACCGACAGC
21084731 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGCTATAAATAGCAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGCTA-AAATAGCAGA
*
21084796 TCTTGCCTTCCTGCACCGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCT-AGGTTACA
65 TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGA-GTTACA
* * ** * *
21084860 GTGGAGCAGGTTAAAAAATAGCGGATCTTGCCTTCTTGCACCGACAGC
129 GCGGAGCAGGCT-AAAAATAGAAGATATTGCCTTCCTGCACCGACAGC
* * *
21084908 GAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGAGTTGTAGCGGAGCAGGTTAAAAATAGCAGA
1 GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGCT-AAAATAGCAGA
* *
21084973 TCTTGCTTTCCTGCACCGTCAGCGAAGCAGATCGA
65 TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
21085008 TAACCCCAAC
Statistics
Matches: 247, Mismatches: 26, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
175 50 0.20
176 73 0.30
177 123 0.50
178 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (175 bp):
GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAGGCTAAAATAGCAGAT
CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTACAGC
GGAGCAGGCTAAAAATAGAAGATATTGCCTTCCTGCACCGACAGC
Found at i:21085068 original size:44 final size:44
Alignment explanation
Indices: 21085019--21085183 Score: 201
Period size: 44 Copynumber: 3.8 Consensus size: 44
21085009 AACCCCAACC
21085019 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATT
* * *
21085063 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG--GT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-AGAATT
* * *
21085106 CTAATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATC
1 CT-ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATT
** *
21085151 CTATCTCCCTGAG-CAATAGTGGAGTAGGTTGAA
1 CTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
21085184 AATAGTAGAT
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
43 4 0.04
44 94 0.91
45 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (44 bp):
CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATT
Found at i:21085172 original size:88 final size:88
Alignment explanation
Indices: 21085021--21085183 Score: 254
Period size: 88 Copynumber: 1.9 Consensus size: 88
21085011 CCCCAACCCT
* * * *
21085021 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGGA
1 ATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTGAGCAACAGTGGA
21085086 ATAGATTGAAGATTGTAGGTCTA
66 ATAGATTGAAGATTGTAGGTCTA
* *
21085109 ATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAATAGTGGA
1 ATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTGAGCAACAGTGGA
* *
21085174 GTAGGTTGAA
66 ATAGATTGAA
21085184 AATAGTAGAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 67 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (88 bp):
ATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGAGAATCCTATCTCCCTGAGCAACAGTGGA
ATAGATTGAAGATTGTAGGTCTA
Found at i:21085557 original size:101 final size:101
Alignment explanation
Indices: 21085382--21085573 Score: 251
Period size: 101 Copynumber: 1.9 Consensus size: 101
21085372 ACAGTGGAGC
* * *
21085382 AGATTGAAGCCGCAACGGCAAATCTTACTCCCCTGGCGGTGTAATGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCGCAACGGCAAATCTTACTCCCCTGGCAGTGTAACGGAACAGATTGAAGCCACGA
* * *
21085447 CAGTGAATCTTTTTTCCTCAACATTGCAAATTTAAA
66 CAGCGAATCTTGTTTCCCCAACATTGCAAATTTAAA
* * * * * *
21085483 AGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCATTGTAGCGGAGCAGATTGAAGCCACGA
1 AGATTGAAGCCGCAACGGCAAATCTTACTCCCCTGGCAGTGTAACGGAACAGATTGAAGCCACGA
*
21085548 C-GACGAATCTTGTTTCCCCGACATTG
66 CAG-CGAATCTTGTTTCCCCAACATTG
21085574 TAGATGGAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
100 1 0.01
101 76 0.99
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (101 bp):
AGATTGAAGCCGCAACGGCAAATCTTACTCCCCTGGCAGTGTAACGGAACAGATTGAAGCCACGA
CAGCGAATCTTGTTTCCCCAACATTGCAAATTTAAA
Found at i:21086309 original size:21 final size:21
Alignment explanation
Indices: 21086284--21086338 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
21086274 ATCTTCAAGG
*
21086284 ATATGTAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
21086305 ATATGCAATCTTGGATATG--
1 ATATGCAATCTTAGATATGAT
21086324 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
21086339 AGATATGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 14 0.45
21 17 0.55
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:21088070 original size:17 final size:17
Alignment explanation
Indices: 21088050--21088115 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
21088040 CAGACATAAA
*
21088050 AGTTCGCCAGTTATAGG
1 AGTTCGCCAGTAATAGG
*
21088067 AGTTTGCCAGTAATA-G
1 AGTTCGCCAGTAATAGG
* **
21088083 TGTTCGCCAGGCATAGG
1 AGTTCGCCAGTAATAGG
*
21088100 AGTTTGCCAGTAATAG
1 AGTTCGCCAGTAATAG
21088116 TGTTCGTCAG
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 12 0.32
17 26 0.68
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (17 bp):
AGTTCGCCAGTAATAGG
Found at i:21088088 original size:33 final size:33
Alignment explanation
Indices: 21088051--21088139 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
21088041 AGACATAAAA
**
21088051 GTTCGCCAGTTATAGGAGTTTGCCAGTAATAGT
1 GTTCGCCAGACATAGGAGTTTGCCAGTAATAGT
*
21088084 GTTCGCCAGGCATAGGAGTTTGCCAGTAATAGT
1 GTTCGCCAGACATAGGAGTTTGCCAGTAATAGT
* *
21088117 GTTCGTCAGACATTGGAGTTTGC
1 GTTCGCCAGACATAGGAGTTTGC
21088140 TAGACTTAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (33 bp):
GTTCGCCAGACATAGGAGTTTGCCAGTAATAGT
Found at i:21090401 original size:26 final size:26
Alignment explanation
Indices: 21090340--21090389 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21090330 CATGTATGTG
*
21090340 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
21090366 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
21090390 TAAATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:21090533 original size:3 final size:3
Alignment explanation
Indices: 21090525--21090564 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
21090515 GTATATATGT
*
21090525 ATA ATA ATA ATA ATA ATA ATA GTA ATA TATA AT- ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA A
21090565 CAAAAATAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:21091580 original size:28 final size:29
Alignment explanation
Indices: 21091540--21091594 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
21091530 GTTGAAATTG
*
21091540 GCTATTGGGTTTTAATT-TT-ATTGGGCCT
1 GCTATTGGATTTT-ATTATTGATTGGGCCT
*
21091568 GCTATTGTATTTTATTATTGATTGGGC
1 GCTATTGGATTTTATTATTGATTGGGC
21091595 AAGGCAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 3 0.13
28 13 0.57
29 7 0.30
ACGTcount: A:0.16, C:0.09, G:0.24, T:0.51
Consensus pattern (29 bp):
GCTATTGGATTTTATTATTGATTGGGCCT
Found at i:21092582 original size:88 final size:88
Alignment explanation
Indices: 21092490--21092660 Score: 234
Period size: 88 Copynumber: 1.9 Consensus size: 88
21092480 GGACCTACTA
* * * *
21092490 TCTTTGATCTACTTCACGTCAGTACATGAAGACACGGTCTGTTTTCTTCGACCTACTCCACCACC
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGACCTACTCCACCACC
*
21092555 AGTATGGGGAGACAAGATCTGTT
66 AGTATGGGAAGACAAGATCTGTT
* * * * * *
21092578 TCTTTGATCTACTTCATGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCCACC
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGACCTACTCCACCACC
*
21092643 AGTATGGGAAGGCAAGAT
66 AGTATGGGAAGACAAGAT
21092661 ATGTATATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 71 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (88 bp):
TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGACCTACTCCACCACC
AGTATGGGAAGACAAGATCTGTT
Found at i:21092624 original size:44 final size:43
Alignment explanation
Indices: 21092490--21092839 Score: 205
Period size: 44 Copynumber: 7.9 Consensus size: 43
21092480 GGACCTACTA
** * * *
21092490 TCTTTGATCTACTTCACGTCAGTACATGAAGACACGGTCTGTTT
1 TCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCTG-TT
* * * ** *
21092534 TCTTCGACCTACTCCACCACCAGTATGGGGAGACAAGATCTGTT
1 TCTTTGATCTACTTCA-CACCAGTACAGGAAGACAAGATCTGTT
** *
21092578 TCTTTGATCTACTTCATGCCAGTACATGAAGACAAGATCTGCTT
1 TCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCTG-TT
* * ** * * *
21092622 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATATGTA
1 TCTTTGATCTACTTC-ACACCAGTACAGGAAGACAAGATCTGTT
* * * * * * * * * *
21092666 TATTCGATCCACTTCGCTACCAATATAGGAAGACATGACCTACTA
1 TCTTTGATCTACTTCAC-ACCAGTACAGGAAGACAAGATCT-GTT
* * * *
21092711 TCTTTGATCTACTTCACGCCAGTACATGAAGACACGGTCTGTTT
1 TCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCTG-TT
* * ** ** *
21092755 TCTTTGACCTACTCCACCACCAGTATGGGGGGACAAGATCTGGTA
1 TCTTTGATCTACTTCA-CACCAGTACAGGAAGACAAGATCT-GTT
* * * *
21092800 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
1 TCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCT
21092840 TTTGTATTCA
Statistics
Matches: 222, Mismatches: 76, Indels: 16
0.71 0.24 0.05
Matches are distributed among these distances:
43 20 0.09
44 121 0.55
45 80 0.36
46 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TCTTTGATCTACTTCACACCAGTACAGGAAGACAAGATCTGTT
Found at i:21092772 original size:221 final size:222
Alignment explanation
Indices: 21092407--21092839 Score: 733
Period size: 221 Copynumber: 2.0 Consensus size: 222
21092397 ATAATCTTCA
* *
21092407 ATCTACTTCGCCGCCAGTATGGGAAGATAAAATATGTATATTCGATCCACTTCGCTACCAATATA
1 ATCTACTTCGCCACCAGTATGGGAAGACAAAATATGTATATTCGATCCACTTCGCTACCAATATA
* *
21092472 GGAAGATAGGACCTACTATCTTTGATCTACTTCACGTCAGTACATGAAGACACGGTCTGTTTTCT
66 GGAAGACAGGACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACACGGTCTGTTTTCT
* * * *
21092537 TCGACCTACTCCACCACCAGTATGGGGAGACAAGATCT-GTTTCTTTGATCTACTTCATGCCAGT
131 TCGACCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCTTCGATCTACTTCACGCCAAT
21092601 ACATGAAGACAAGATCTGCTTTCTTTG
196 ACATGAAGACAAGATCTGCTTTCTTTG
* * *
21092628 ATCTGCTTCGCCACCAGTATGGGAAGGCAAGATATGTATATTCGATCCACTTCGCTACCAATATA
1 ATCTACTTCGCCACCAGTATGGGAAGACAAAATATGTATATTCGATCCACTTCGCTACCAATATA
*
21092693 GGAAGACATGACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACACGGTCTGTTTTCT
66 GGAAGACAGGACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACACGGTCTGTTTTCT
* *
21092758 TTGACCTACTCCACCACCAGTATGGGGGGACAAGATCTGGTATCTTCGATCTACTTCACGCCAAT
131 TCGACCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCTTCGATCTACTTCACGCCAAT
21092823 ACATGAAGACAAGATCT
196 ACATGAAGACAAGATCT
21092840 TTTGTATTCA
Statistics
Matches: 197, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
221 158 0.80
222 39 0.20
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (222 bp):
ATCTACTTCGCCACCAGTATGGGAAGACAAAATATGTATATTCGATCCACTTCGCTACCAATATA
GGAAGACAGGACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACACGGTCTGTTTTCT
TCGACCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCTTCGATCTACTTCACGCCAAT
ACATGAAGACAAGATCTGCTTTCTTTG
Found at i:21092822 original size:133 final size:133
Alignment explanation
Indices: 21092578--21092833 Score: 336
Period size: 133 Copynumber: 1.9 Consensus size: 133
21092568 AAGATCTGTT
* * * * *
21092578 TCTTTGATCTACTTCATGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCCACC
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGACCTACTCCACCACC
* *
21092643 AGTATGGGAAGGCAAGATATGTATATTCGATCCACTTCGCTACCAATATAGGAAGACATGACCTA
66 AGTATGGGAAGGCAAGATATGTATATTCGATCCACTTCACTACCAATACAGGAAGACATGACCTA
21092708 CTA
131 CTA
* * *
21092711 TCTTTGATCTACTTCACGCCAGTACATGAAGACACGGTCTGTTTTCTTTGACCTACTCCACCACC
1 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGACCTACTCCACCACC
* * * * * *
21092776 AGTATGGG-GGGACAAGATCTGGTATCTTCGATCTACTTCAC-GCCAATACATGAAGACA
66 AGTATGGGAAGG-CAAGATAT-GTATATTCGATCCACTTCACTACCAATACAGGAAGACA
21092834 AGATCTTTTG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
132 2 0.02
133 86 0.82
134 17 0.16
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (133 bp):
TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGACCTACTCCACCACC
AGTATGGGAAGGCAAGATATGTATATTCGATCCACTTCACTACCAATACAGGAAGACATGACCTA
CTA
Found at i:21099012 original size:26 final size:26
Alignment explanation
Indices: 21098951--21099000 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21098941 CATGTATGTG
*
21098951 AAAATATGTATGAATTATAAAATGGA
1 AAAATATATATGAATTATAAAATGGA
* *
21098977 AAAATGTATATGTATTATAAAATG
1 AAAATATATATGAATTATAAAATG
21099001 TAAATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (26 bp):
AAAATATATATGAATTATAAAATGGA
Found at i:21099153 original size:3 final size:3
Alignment explanation
Indices: 21099145--21099196 Score: 79
Period size: 3 Copynumber: 17.3 Consensus size: 3
21099135 GTATATATGT
*
21099145 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA TATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
21099190 ATA ATA A
1 ATA ATA A
21099197 CAAAAATAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:21102450 original size:37 final size:37
Alignment explanation
Indices: 21102409--21102554 Score: 139
Period size: 37 Copynumber: 3.9 Consensus size: 37
21102399 GATTCCCTGC
*
21102409 AAAAGATGGAGAACAATAGTAAAGATTCTCTGCAAAG
1 AAAAGACGGAGAACAATAGTAAAGATTCTCTGCAAAG
** * * *
21102446 AAAAGACGGAGATTAGTAATAAAGATTCTCTGCAAAAAAA
1 AAAAGACGGAGAACAATAGTAAAGATTCTCTGC---AAAG
** * * * *
21102486 AAAAGACATAGATCAACAGTAAAGGTTCTATGCAAAG
1 AAAAGACGGAGAACAATAGTAAAGATTCTCTGCAAAG
* *
21102523 AAAAGACGGAAAACAATAGTAAAGATTTTCTG
1 AAAAGACGGAGAACAATAGTAAAGATTCTCTG
21102555 TAAAAGTTTT
Statistics
Matches: 83, Mismatches: 23, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
37 55 0.66
40 28 0.34
ACGTcount: A:0.50, C:0.11, G:0.19, T:0.20
Consensus pattern (37 bp):
AAAAGACGGAGAACAATAGTAAAGATTCTCTGCAAAG
Found at i:21108432 original size:18 final size:18
Alignment explanation
Indices: 21108385--21108432 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
21108375 TAAAATTTTA
21108385 ATTTATAATT-TTTTTATG
1 ATTTA-AATTATTTTTATG
*
21108403 ATTTTAAA-TATTTTTATT
1 A-TTTAAATTATTTTTATG
21108421 ATTTAAATTATT
1 ATTTAAATTATT
21108433 GAAGATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTAAATTATTTTTATG
Found at i:21109977 original size:9 final size:9
Alignment explanation
Indices: 21109965--21109995 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
21109955 ATGAAACGAA
21109965 TCGAGTTAT
1 TCGAGTTAT
*
21109974 TCGAGTTAA
1 TCGAGTTAT
21109983 TCGAGTTAT
1 TCGAGTTAT
21109992 TCGA
1 TCGA
21109996 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:21110593 original size:17 final size:17
Alignment explanation
Indices: 21110573--21110655 Score: 64
Period size: 17 Copynumber: 4.8 Consensus size: 17
21110563 ATTTATATCT
21110573 ATTATTTATATTATTAA
1 ATTATTTATATTATTAA
* *
21110590 ATTAAATTTCACATT-TTAT
1 ATT--ATTT-ATATTATTAA
*
21110609 ATTATTTATATTATTGA
1 ATTATTTATATTATTAA
*
21110626 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTAA
21110644 A-TATTTATATTA
1 ATTATTTATATTA
21110656 AAATTGAATT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
15 1 0.02
16 7 0.13
17 23 0.43
18 8 0.15
19 11 0.20
20 4 0.07
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTAA
Found at i:21111003 original size:5 final size:5
Alignment explanation
Indices: 21110993--21111049 Score: 71
Period size: 5 Copynumber: 11.2 Consensus size: 5
21110983 GAATAAATAT
* *
21110993 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG AATTCC ATCTC- ACTCG ATTCG
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG ATTCG ATTCG
21111044 ATTCG A
1 ATTCG A
21111050 GAAAACTTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
4 2 0.04
5 38 0.83
6 6 0.13
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (5 bp):
ATTCG
Found at i:21112586 original size:13 final size:13
Alignment explanation
Indices: 21112568--21112592 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21112558 ATATAGGGGA
21112568 AAATGTACCATTT
1 AAATGTACCATTT
21112581 AAATGTACCATT
1 AAATGTACCATT
21112593 AACGAATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
AAATGTACCATTT
Found at i:21124562 original size:46 final size:46
Alignment explanation
Indices: 21124491--21124675 Score: 275
Period size: 46 Copynumber: 4.0 Consensus size: 46
21124481 CATGGCAAAG
* * *
21124491 TGTGGAACGTAGGTATGGTAATTCAG-GAAAGAAAACCATATTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGTG-AAGAAAACCATACTGAGT
*
21124537 TGTGGAACGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
* *
21124583 TGTGAAACGTAGGTATGGTATTTTAGT-AACGAAAACCATACAGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGTGAA-GAAAACCATACTGAGT
*
21124629 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
21124675 T
1 T
21124676 ATAGCATTGT
Statistics
Matches: 128, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 2 0.02
46 123 0.96
47 3 0.02
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (46 bp):
TGTGAAACGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
Found at i:21125904 original size:17 final size:17
Alignment explanation
Indices: 21125850--21125896 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
21125840 TCTGGATTGG
* * *
21125850 TTTATTGATTTTTATCA
1 TTTATTTATTTTTCTTA
*
21125867 TTTGTTTATTTTTCTTA
1 TTTATTTATTTTTCTTA
21125884 TTTATTTATTTTT
1 TTTATTTATTTTT
21125897 GCTATTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTATTTATTTTTCTTA
Found at i:21133676 original size:24 final size:24
Alignment explanation
Indices: 21133644--21133698 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
21133634 CAGACGGATG
*
21133644 GGGGGAAAACTAAGTTAGGGATTT
1 GGGGAAAAACTAAGTTAGGGATTT
*
21133668 GGGGAAAAACTAAGTTAGGTATTT
1 GGGGAAAAACTAAGTTAGGGATTT
21133692 GGAGGAA
1 GG-GGAA
21133699 TAAGGGTTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.24
Consensus pattern (24 bp):
GGGGAAAAACTAAGTTAGGGATTT
Found at i:21138678 original size:20 final size:20
Alignment explanation
Indices: 21138653--21138712 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
21138643 CTTGTACAAG
*
21138653 ATTTACACTTCGGTGCCTCT
1 ATTTACACTTCGGTGCCCCT
*
21138673 ATTTACACTTCGATGCCCCT
1 ATTTACACTTCGGTGCCCCT
* * *
21138693 GTATACACTTCGGTGTCCCT
1 ATTTACACTTCGGTGCCCCT
21138713 GTTTGTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.32, G:0.15, T:0.37
Consensus pattern (20 bp):
ATTTACACTTCGGTGCCCCT
Found at i:21142804 original size:33 final size:33
Alignment explanation
Indices: 21142734--21142809 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
21142724 CCCATACAAG
*
21142734 CGTGT-GGCCCACACGCCCACATTGACCTTGCC
1 CGTGTGGGCCCACACGCCCACATTGACCTAGCC
* *
21142766 CGTGTGGGCCTACACGCCC-CATTTGGCCTAGCC
1 CGTGTGGGCCCACACGCCCACA-TTGACCTAGCC
*
21142799 TGTGT-GGCCCA
1 CGTGTGGGCCCA
21142810 TACAGCCACA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 12 0.32
33 25 0.68
ACGTcount: A:0.13, C:0.39, G:0.26, T:0.21
Consensus pattern (33 bp):
CGTGTGGGCCCACACGCCCACATTGACCTAGCC
Found at i:21147727 original size:15 final size:15
Alignment explanation
Indices: 21147709--21147743 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
21147699 GTATTATATA
*
21147709 ATAATGACAATAGTT
1 ATAATGACAATAATT
*
21147724 ATAATGATAATAATT
1 ATAATGACAATAATT
21147739 ATAAT
1 ATAAT
21147744 AATAGTACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (15 bp):
ATAATGACAATAATT
Found at i:21154690 original size:13 final size:13
Alignment explanation
Indices: 21154672--21154696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21154662 CTAAATCATA
21154672 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
21154685 ATTTTAGTAAAA
1 ATTTTAGTAAAA
21154697 CCCCTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Done.