Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 71 of 228
Found at i:21155882 original size:19 final size:19
Alignment explanation
Indices: 21155866--21155905 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
21155856 ACTAAAAATT
21155866 TATTTTAAAAATAAAAAAA
1 TATTTTAAAAATAAAAAAA
*
21155885 TATTTTAAAATTAAAAAAA
1 TATTTTAAAAATAAAAAAA
21155904 TA
1 TA
21155906 AAAAAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TATTTTAAAAATAAAAAAA
Found at i:21155889 original size:23 final size:23
Alignment explanation
Indices: 21155845--21155903 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 23
21155835 CCAGCTCATT
**
21155845 TTTTAATAAATACTAAAAATTTA
1 TTTTAATAAATAAAAAAAATTTA
21155868 TTTTAA-AAAT-AAAAAAA--TA
1 TTTTAATAAATAAAAAAAATTTA
*
21155887 TTTTAA-AATTAAAAAAA
1 TTTTAATAAATAAAAAAA
21155904 TAAAAAAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 11 0.34
20 6 0.19
21 5 0.16
22 4 0.12
23 6 0.19
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
TTTTAATAAATAAAAAAAATTTA
Found at i:21157097 original size:108 final size:107
Alignment explanation
Indices: 21156767--21157487 Score: 1046
Period size: 105 Copynumber: 6.7 Consensus size: 107
21156757 AGTAAAAAAA
* * *
21156767 AAAAACAAAATTTCTCCAAAAAAGGTGGTGCCAGCCATTGGCAGGCCACCACCCAA-TTTTTTTT
1 AAAAA-AAAA-TTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTT
21156831 TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
64 TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
* * * *
21156875 AAAAAAAAATT-TCCAAAAAAGATGGTGCTGGCCATTGGCAGGCCACCACCAAAAGAATTTTTTT
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACC--AA-ATTTTTTTT
21156939 TTACTTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAA-T
63 TTAC-TTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
* *
21156984 AAAAAAAAAATTCCCCAAAAAAGGTGGAGCCGGCCATCGGCAGGCCACCACCAAATTTTTTTTTT
1 -AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTT
*
21157049 ACTTTTTTCGTATACTCATACCTGCTATTGACACGAAAAAAGT
65 ACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
**
21157092 -AAAAAAAATT-CCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCGTCAAATTTTTTTTTTT
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAA---TTTTTTTT
* *
21157155 TTACTTTTTTCTTACACTGATACCTGCTATTGACACGAAAAAAGT
63 TTACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
* *
21157200 AAAAAAAAA-TCCCCAAAAAAGGTGGTGCCGGCTATTGGCAGGCCACCATC-AATTTTTTTTTTA
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTT-
*
21157263 ACTTTTTTCGTATACTGATACCTGTTATTGACACGAAAAAAGT
65 ACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
* * *
21157306 AAAAAAAATTTCCCCAAAAAAGGTGGTGTCGGCCATTGGCAGGCCACTA-C-AATTTTTTTTTTA
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTTA
21157369 CTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
66 CTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
* * * * *
21157411 AAAAAAAAAATTCTCCAAAAATGGTGGTGCCGGCCATTGGCAAGCTACCACCAATTTTTTTTTTT
1 -AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTT
21157476 ACTTTTTTCGTA
65 ACTTTTTTCGTA
21157488 CTCTGGTGCC
Statistics
Matches: 559, Mismatches: 36, Indels: 36
0.89 0.06 0.06
Matches are distributed among these distances:
105 126 0.23
106 115 0.21
107 80 0.14
108 95 0.17
109 59 0.11
110 50 0.09
111 34 0.06
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (107 bp):
AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTTA
CTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
Found at i:21157126 original size:216 final size:214
Alignment explanation
Indices: 21156716--21157487 Score: 1092
Period size: 216 Copynumber: 3.6 Consensus size: 214
21156706 AAAAAATTTG
* *
21156716 TACTTTTTTCGTATACTGGTACATGCTATTGACACGAAAAAAGTAAAAAAAAAAAACAAAATTTC
1 TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT------AAAAAA-AAAA-TTC
* * *
21156781 TCCAAAAAAGGTGGTGCCAGCCATTGGCAGGCCACCACCCAA-TTTTTTTTTACTTTTTTCGTAT
58 CCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTTACTTTTTTCGTAT
* * *
21156845 ACTGATACCTGCTATTGACACGAAAAAAGTAAAAAAAAATTTCCAAAAAAGATGGTGCTGGCCAT
123 ACTGATACCTGCTATTGACACGAAAAAAGT-AAAAAAAATTCCCAAAAAAGGTGGTGCCGGCCAT
*
21156910 TGGCAGGCCACCACCAAAAGAATTTTTTTT
187 TGGCAGGCCACCA-CAAAA-ATTTTTTTTT
21156940 TACTTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAA-TAAAAAAAAAATTCCCCAAAA
1 TAC-TTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGTAAAAAAAAAATTCCCCAAAA
* * *
21157004 AAGGTGGAGCCGGCCATCGGCAGGCCACCACCAAATTTTTTTTTTACTTTTTTCGTATACTCATA
65 AAGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTTACTTTTTTCGTATACTGATA
21157069 CCTGCTATTGACACGAAAAAAGTAAAAAAAATTCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGC
130 CCTGCTATTGACACGAAAAAAGTAAAAAAAATTCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGC
* **
21157134 CACCGTCAAATTTTTTTTTTTT
195 CACC-ACAAA-AATTTTTTTTT
* *
21157156 TACTTTTTTCTTACACTGATACCTGCTATTGACACGAAAAAAGT-AAAAAAAAA-TCCCCAAAAA
1 TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGTAAAAAAAAAATTCCCCAAAAA
* *
21157219 AGGTGGTGCCGGCTATTGGCAGGCCACCATC-AATTTTTTTTTTAACTTTTTTCGTATACTGATA
66 AGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTT-ACTTTTTTCGTATACTGATA
* *
21157283 CCTGTTATTGACACGAAAAAAGTAAAAAAAATTTCCCCAAAAAAGGTGGTGTCGGCCATTGGCAG
130 CCTGCTATTGACACGAAAAAAGTAAAAAAAA-TT-CCCAAAAAAGGTGGTGCCGGCCATTGGCAG
*
21157348 GCCACTAC---AATTTTTTTTT
193 GCCACCACAAAAATTTTTTTTT
*
21157367 TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGTAAAAAAAAAATTCTCCAAAAA
1 TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGTAAAAAAAAAATTCCCCAAAAA
* * * *
21157432 TGGTGGTGCCGGCCATTGGCAAGCTACCACCAATTTTTTTTTTTACTTTTTTCGTA
66 AGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTTACTTTTTTCGTA
21157488 CTCTGGTGCC
Statistics
Matches: 500, Mismatches: 37, Indels: 33
0.88 0.06 0.06
Matches are distributed among these distances:
211 51 0.10
212 9 0.02
213 59 0.12
214 97 0.19
215 49 0.10
216 133 0.27
217 55 0.11
218 6 0.01
224 4 0.01
225 37 0.07
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (214 bp):
TACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGTAAAAAAAAAATTCCCCAAAAA
AGGTGGTGCCGGCCATTGGCAGGCCACCACCAAATTTTTTTTTTACTTTTTTCGTATACTGATAC
CTGCTATTGACACGAAAAAAGTAAAAAAAATTCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCC
ACCACAAAAATTTTTTTTT
Found at i:21157513 original size:105 final size:106
Alignment explanation
Indices: 21156767--21157487 Score: 983
Period size: 106 Copynumber: 6.7 Consensus size: 106
21156757 AGTAAAAAAA
* *
21156767 AAAAACAAAATTTCTCCAAAAAAGGTGGTGCCAGCCATTGGCAGGCCACCACCCAA--TTTTTTT
1 AAAAA-AAAA-TTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCA-CCAATTTTTTTTT
21156830 TTACTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
63 TTACTTTTTTCGTATACTGATACCTGCTATTGA-ACGAAAAAAGT
* * * **
21156875 AAAAAAAAATT-TCCAAAAAAGATGGTGCTGGCCATTGGCAGGCCACCACCAAAAGAATTTTTTT
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACC--AA-TTTTTTTTT
21156939 TTACTTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAA-T
63 TTAC-TTTTTTCGTATACTGATACCTGCTATTGA-ACGAAAAAAGT
* * *
21156984 AAAAAAAAAATTCCCCAAAAAAGGTGGAGCCGGCCATCGGCAGGCCACCACCAAATTTTTTTTTT
1 -AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAATTTTTTTTTTT
*
21157049 ACTTTTTTCGTATACTCATACCTGCTATTGACACGAAAAAAGT
65 ACTTTTTTCGTATACTGATACCTGCTATTGA-ACGAAAAAAGT
* *
21157092 -AAAAAAAATT-CCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCGTCAAATTTTTTTTTTT
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACC-ACCAA--TTTTTTTTT
* *
21157155 TTACTTTTTTCTTACACTGATACCTGCTATTGACACGAAAAAAGT
63 TTACTTTTTTCGTATACTGATACCTGCTATTGA-ACGAAAAAAGT
* * *
21157200 AAAAAAAAA-TCCCCAAAAAAGGTGGTGCCGGCTATTGGCAGGCCACCATCAATTTTTTTTTTAA
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAATTTTTTTTTTTA
*
21157264 CTTTTTTCGTATACTGATACCTGTTATTGACACGAAAAAAGT
66 CTTTTTTCGTATACTGATACCTGCTATTGA-ACGAAAAAAGT
* * *
21157306 AAAAAAAATTTCCCCAAAAAAGGTGGTGTCGGCCATTGGCAGGCCACTA-CAA-TTTTTTTTTTA
1 AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAATTTTTTTTTTTA
21157369 CTTTTTTCGTATACTGATACCTGCTATTGACACGAAAAAAGT
66 CTTTTTTCGTATACTGATACCTGCTATTGA-ACGAAAAAAGT
* * * *
21157411 AAAAAAAAAATTCTCCAAAAATGGTGGTGCCGGCCATTGGCAAGCTACCACCAATTTTTTTTTTT
1 -AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAATTTTTTTTTTT
21157476 ACTTTTTTCGTA
65 ACTTTTTTCGTA
21157488 CTCTGGTGCC
Statistics
Matches: 556, Mismatches: 39, Indels: 36
0.88 0.06 0.06
Matches are distributed among these distances:
104 2 0.00
105 119 0.21
106 120 0.22
107 81 0.15
108 93 0.17
109 57 0.10
110 50 0.09
111 34 0.06
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (106 bp):
AAAAAAAAATTCCCCAAAAAAGGTGGTGCCGGCCATTGGCAGGCCACCACCAATTTTTTTTTTTA
CTTTTTTCGTATACTGATACCTGCTATTGAACGAAAAAAGT
Found at i:21158195 original size:54 final size:54
Alignment explanation
Indices: 21158110--21158224 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
21158100 TAAATATCAA
* *
21158110 GGTCTCAATGAGCTGGACAGTGAGTCCGTGATGAAAATTTTGTTGCCTAAAGCT
1 GGTCTCAATGAGCTGGACAGTGAATCCGTGATGAAAATTTTGCTGCCTAAAGCT
* *
21158164 GGTCTCAATGAGCTGGACAGTGAATCTGTGATGGAAATTTTGCTGCCTAAAGCT
1 GGTCTCAATGAGCTGGACAGTGAATCCGTGATGAAAATTTTGCTGCCTAAAGCT
21158218 GGTCTCA
1 GGTCTCA
21158225 GTGGCCCAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (54 bp):
GGTCTCAATGAGCTGGACAGTGAATCCGTGATGAAAATTTTGCTGCCTAAAGCT
Found at i:21162024 original size:21 final size:21
Alignment explanation
Indices: 21161999--21162041 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
21161989 TTGTAGAAGA
21161999 GATAATAAATGAAACAATGTT
1 GATAATAAATGAAACAATGTT
21162020 GATAATAAATGAAACAATGTT
1 GATAATAAATGAAACAATGTT
21162041 G
1 G
21162042 CTACTTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.28
Consensus pattern (21 bp):
GATAATAAATGAAACAATGTT
Found at i:21164946 original size:20 final size:20
Alignment explanation
Indices: 21164923--21164986 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
21164913 ACTATTTAGG
21164923 TTATTATTATTTTTTTTTCT
1 TTATTATTATTTTTTTTTCT
21164943 TTA-TATATATTTTCGTTTTAT-T
1 TTATTAT-TATTTT--TTTT-TCT
* * *
21164965 TTATTATTGTATTTTTTACT
1 TTATTATTATTTTTTTTTCT
21164985 TT
1 TT
21164987 TTTTTAAGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
19 3 0.09
20 16 0.46
22 12 0.34
23 4 0.11
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (20 bp):
TTATTATTATTTTTTTTTCT
Found at i:21165108 original size:22 final size:22
Alignment explanation
Indices: 21165057--21165109 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
21165047 TCATCTCATT
*
21165057 TATTTATTTATTTGTTTTCTTTA
1 TATTTA-TTATTTGTTTTCTTAA
21165080 T-TGTTATTA-TTGTTTTACTTAA
1 TAT-TTATTATTTGTTTT-CTTAA
21165102 TATTTATT
1 TATTTATT
21165110 CATTCATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 7 0.27
22 14 0.54
23 5 0.19
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.70
Consensus pattern (22 bp):
TATTTATTATTTGTTTTCTTAA
Found at i:21169338 original size:32 final size:31
Alignment explanation
Indices: 21169273--21169339 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
21169263 ACCTAAAATT
* * *
21169273 ATTAATTCTAATTATTCTAATATTTTATTTA
1 ATTAATTCTAATTATTCTAATATATAATCTA
21169304 ATTAATTCCTAATTATT-TAATTATATAATCTA
1 ATTAATT-CTAATTATTCTAA-TATATAATCTA
21169336 ATTA
1 ATTA
21169340 TGGTTTCCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 10 0.32
32 21 0.68
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (31 bp):
ATTAATTCTAATTATTCTAATATATAATCTA
Found at i:21175852 original size:26 final size:26
Alignment explanation
Indices: 21175816--21175911 Score: 156
Period size: 26 Copynumber: 3.7 Consensus size: 26
21175806 AAGTATAATA
* *
21175816 TACTGGCAACTTTGCTGCGATACTGT
1 TACTGGCAACTTTGCTGCGTTACTAT
21175842 TACTGGCAACTTTGCTGCGTTACTAT
1 TACTGGCAACTTTGCTGCGTTACTAT
*
21175868 TACTGGCAGCTTTGCTGCGTTACTAT
1 TACTGGCAACTTTGCTGCGTTACTAT
*
21175894 TACTGGCAGCTTTGCTGC
1 TACTGGCAACTTTGCTGC
21175912 AATATTAGTG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
TACTGGCAACTTTGCTGCGTTACTAT
Found at i:21176069 original size:33 final size:33
Alignment explanation
Indices: 21176012--21176077 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
21176002 TGCATTATTG
21176012 CACTGTACTGATACTGTAATGGGCT-AAGGCCCA
1 CACTGTACTGATACTGTAATGGGCTCAA-GCCCA
* *
21176045 CACTGTACTGTTATTG-AATAGGGCTCAAGCCCA
1 CACTGTACTGATACTGTAAT-GGGCTCAAGCCCA
21176078 GACTAATACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 3 0.10
33 24 0.83
34 2 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (33 bp):
CACTGTACTGATACTGTAATGGGCTCAAGCCCA
Found at i:21177404 original size:6 final size:6
Alignment explanation
Indices: 21177393--21177417 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
21177383 TTTGTTTATA
21177393 TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT T
21177418 AAGGTACCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:21183285 original size:22 final size:23
Alignment explanation
Indices: 21183252--21183301 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
21183242 GGACAAGTCA
* *
21183252 CCACT-GATTTGCATATAAATTG
1 CCACTGGATTTGCAGATAAACTG
21183274 CCACTGGA-TTGCAGATAAACTG
1 CCACTGGATTTGCAGATAAACTG
21183296 CCACTG
1 CCACTG
21183302 ATAACACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (23 bp):
CCACTGGATTTGCAGATAAACTG
Found at i:21197018 original size:13 final size:13
Alignment explanation
Indices: 21197000--21197025 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21196990 CTCCTTTTAC
21197000 TCTCTTTTCTTAT
1 TCTCTTTTCTTAT
21197013 TCTCTTTTCTTAT
1 TCTCTTTTCTTAT
21197026 GGCCGAACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (13 bp):
TCTCTTTTCTTAT
Found at i:21197758 original size:27 final size:27
Alignment explanation
Indices: 21197712--21198034 Score: 357
Period size: 27 Copynumber: 12.0 Consensus size: 27
21197702 TGTAATGGGC
* *
21197712 GTAAAATGACCGGAAA-ACCCGCGAAGG
1 GTAAAATGATC-GAAATACCCTCGAAGG
* * *
21197739 GTAAAATGACCAAAATACCC-CTAAAGG
1 GTAAAATGATCGAAATACCCTC-GAAGG
*
21197766 GTAAAATGATCGAAATACCCTCGAAAG
1 GTAAAATGATCGAAATACCCTCGAAGG
*
21197793 GTAAAATGATCGAAATACTCC-CAAAGG
1 GTAAAATGATCGAAATAC-CCTCGAAGG
21197820 GTAAAATGATCGAAATACCCTCGAAGG
1 GTAAAATGATCGAAATACCCTCGAAGG
* **
21197847 GTAAAATGACCGAAATACCCTTAAAGG
1 GTAAAATGATCGAAATACCCTCGAAGG
* * *
21197874 GTAAAATGATCAAAATACCCTCAAAGA
1 GTAAAATGATCGAAATACCCTCGAAGG
* *
21197901 GTAAAATGATTGAAATAGCCTCGAAGG
1 GTAAAATGATCGAAATACCCTCGAAGG
*
21197928 GTAAAATGATCGAAATAGCCTCGAAGG
1 GTAAAATGATCGAAATACCCTCGAAGG
*
21197955 GTAAAATG-GCTGAAATACCCTCGAAGG
1 GTAAAATGATC-GAAATACCCTCGAAGG
* * ** *
21197982 GTAAATTGATTGAAATACCCTTAAAAG
1 GTAAAATGATCGAAATACCCTCGAAGG
* * *
21198009 GTAAAATGACCAAAATACCTTCGAAG
1 GTAAAATGATCGAAATACCCTCGAAG
21198035 TTTATAATTA
Statistics
Matches: 251, Mismatches: 38, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
26 7 0.03
27 241 0.96
28 3 0.01
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
GTAAAATGATCGAAATACCCTCGAAGG
Found at i:21198064 original size:81 final size:81
Alignment explanation
Indices: 21197712--21198071 Score: 302
Period size: 81 Copynumber: 4.4 Consensus size: 81
21197702 TGTAATGGGC
* * *** *
21197712 GTAAAATGACCGGAAA-ACCCGCGAAGGGTAAAATGACCAAAATACCC-CTAAAGGGTAAAATGA
1 GTAAAATGA-CTGAAATACCCTCGAAGGGTAAAATGATTGAAATACCCTC-AAAAGGTAAAATGA
* * * *
21197775 TCGAAATACCCTCGAAAG
64 CCAAAATAGCCTCGAAGG
* * * *
21197793 GTAAAATGA-TCGAAATACTCC-CAAAGGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATGA
1 GTAAAATGACT-GAAATAC-CCTCGAAGGGTAAAATGATTGAAATACCCTCAAAAGGTAAAATGA
* * **
21197856 CCGAAATACCCTTAAAGG
64 CCAAAATAGCCTCGAAGG
* * * * * * *
21197874 GTAAAATGA-TCAAAATACCCTCAAAGAGTAAAATGATTGAAATAGCCTCGAAGGGTAAAATGAT
1 GTAAAATGACT-GAAATACCCTCGAAGGGTAAAATGATTGAAATACCCTCAAAAGGTAAAATGAC
*
21197938 CGAAATAGCCTCGAAGG
65 CAAAATAGCCTCGAAGG
* * *
21197955 GTAAAATGGCTGAAATACCCTCGAAGGGTAAATTGATTGAAATACCCTTAAAAGGTAAAATGACC
1 GTAAAATGACTGAAATACCCTCGAAGGGTAAAATGATTGAAATACCCTCAAAAGGTAAAATGACC
*
21198020 AAAATA-CCTTCGAAGT
66 AAAATAGCC-TCGAAGG
* * * *
21198036 TTATAATTACTGAAATACCC-CTATAGGGTAAAATGA
1 GTAAAATGACTGAAATACCCTCGA-AGGGTAAAATGA
21198072 CCATTATACC
Statistics
Matches: 236, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
80 10 0.04
81 222 0.94
82 4 0.02
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (81 bp):
GTAAAATGACTGAAATACCCTCGAAGGGTAAAATGATTGAAATACCCTCAAAAGGTAAAATGACC
AAAATAGCCTCGAAGG
Found at i:21198333 original size:26 final size:26
Alignment explanation
Indices: 21198270--21198346 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
21198260 ACATACACTG
* * * * *
21198270 TTACTGGCAGCATTGCTACGTTACTG
1 TTACTGGCAACTTTGCTGCGTTATTA
21198296 TTACTGGCAACTTTGCTGCGTTATTA
1 TTACTGGCAACTTTGCTGCGTTATTA
* *
21198322 TTACTGGCAACTTTGTTGCGCTATT
1 TTACTGGCAACTTTGCTGCGTTATT
21198347 GGTGTGTTGG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (26 bp):
TTACTGGCAACTTTGCTGCGTTATTA
Found at i:21198538 original size:30 final size:30
Alignment explanation
Indices: 21198476--21198549 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
21198466 ATTACTGCTT
* *
21198476 TGGGCTAAGG-CC-CATACTATTACTATAT
1 TGGGCTAAGGCCCACACACTATTACTATAA
* *
21198504 TGGGCTAAGGCCCACACACTGTTACTGTAA
1 TGGGCTAAGGCCCACACACTATTACTATAA
*
21198534 TGGGCTAAGACCCACA
1 TGGGCTAAGGCCCACA
21198550 TTGTGCTGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 10 0.26
29 2 0.05
30 27 0.69
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (30 bp):
TGGGCTAAGGCCCACACACTATTACTATAA
Found at i:21205546 original size:27 final size:27
Alignment explanation
Indices: 21205516--21205901 Score: 390
Period size: 27 Copynumber: 14.3 Consensus size: 27
21205506 GTAATAGGCC
21205516 TAAAATGACTGAAATACCCTCGAAAGG
1 TAAAATGACTGAAATACCCTCGAAAGG
* *
21205543 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGG
*
21205570 TAAAATGA-TCGAAATACCCCCGAAAGG
1 TAAAATGACT-GAAATACCCTCGAAAGG
* * *
21205597 TAAACTGATTGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGG
* * * *
21205624 TAAAATAACCGAAATACCCCCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGG
* * *
21205651 TAAAATAATTGAAATACCTTCGAAAGG
1 TAAAATGACTGAAATACCCTCGAAAGG
* * * *
21205678 TAAAATGACCGAAAGACCCTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGG
* *
21205705 TAAAATGACCGAAACACCCTCGAAAGG
1 TAAAATGACTGAAATACCCTCGAAAGG
*
21205732 TAAAATGA-TCGAAATACCCTCGAATGG
1 TAAAATGACT-GAAATACCCTCGAAAGG
* * *
21205759 TAAAATAACCGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAAGG
* * *
21205786 TAAAAT-AATCGAAATACCCCCAAAAGG
1 TAAAATGACT-GAAATACCCTCGAAAGG
21205813 TAAAATGACTGAAATACCCTCG--AGG
1 TAAAATGACTGAAATACCCTCGAAAGG
*
21205838 ATAAACTGACTGAAATACCCTCG-AAGG
1 -TAAAATGACTGAAATACCCTCGAAAGG
* * * *
21205865 ATAAAATTATTGAAATAACCCT-GTAGGG
1 -TAAAATGACTGAAAT-ACCCTCGAAAGG
21205893 TAAAATGAC
1 TAAAATGAC
21205902 CATTATACCC
Statistics
Matches: 300, Mismatches: 49, Indels: 20
0.81 0.13 0.05
Matches are distributed among these distances:
25 3 0.01
26 22 0.07
27 264 0.88
28 11 0.04
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.18
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAAGG
Found at i:21205665 original size:81 final size:81
Alignment explanation
Indices: 21205516--21205900 Score: 461
Period size: 81 Copynumber: 4.8 Consensus size: 81
21205506 GTAATAGGCC
* * *
21205516 TAAAATGACTGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGATCG
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATGATCG
*
21205581 AAATACCCCCGAAAGG
66 AAATACCCTCGAAAGG
* * * *
21205597 TAAACTGATTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATAATTG
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATGATCG
*
21205662 AAATACCTTCGAAAGG
66 AAATACCCTCGAAAGG
* * * * * * *
21205678 TAAAATGACCGAAAGACCCTTGAAGGGTAAAATGACCGAAACACCCTCGAAAGGTAAAATGATCG
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATGATCG
*
21205743 AAATACCCTCGAATGG
66 AAATACCCTCGAAAGG
* * * * *
21205759 TAAAATAACCGAAATACCCTCGAAGGGTAAAATAATCGAAATACCCCCAAAAGGTAAAATGA-CT
1 TAAAATGACTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATGATC-
21205823 GAAATACCCTCG--AGG
65 GAAATACCCTCGAAAGG
* * * ** * * *
21205838 ATAAACTGACTGAAATACCCTCGAAGGATAAAATTATTGAAATAACCCTGTAGGGTAAAATGA
1 -TAAAATGACTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATGA
21205901 CCATTATACC
Statistics
Matches: 260, Mismatches: 42, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
79 2 0.01
80 52 0.20
81 206 0.79
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (81 bp):
TAAAATGACTGAAATACCCTCGAAGGGTAAAATAACCGAAATACCCCCGAAGGGTAAAATGATCG
AAATACCCTCGAAAGG
Found at i:21206125 original size:26 final size:26
Alignment explanation
Indices: 21206095--21206147 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21206085 TGCCACATAC
*
21206095 ACTGTTACTGACAGCATTGCTGTGTT
1 ACTGTTACTGACAGCATTGCTGAGTT
* * *
21206121 ACTGTTATTGGCAGCTTTGCTGAGTT
1 ACTGTTACTGACAGCATTGCTGAGTT
21206147 A
1 A
21206148 TTATTACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.40
Consensus pattern (26 bp):
ACTGTTACTGACAGCATTGCTGAGTT
Found at i:21206340 original size:28 final size:28
Alignment explanation
Indices: 21206300--21206386 Score: 129
Period size: 28 Copynumber: 3.0 Consensus size: 28
21206290 ATTATTCTGA
*
21206300 TTACTGTTTTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
21206328 TTACTGTATTGGGCTAAGGCCCACACACTG
1 TTACTGTATTGGGCTAAGG-CC-CACACTG
* *
21206358 TTACTGTAATGGGCTAAGACCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
21206386 T
1 T
21206387 GCTGCTACTG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
28 26 0.48
29 4 0.07
30 24 0.44
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:21206357 original size:30 final size:30
Alignment explanation
Indices: 21206300--21206383 Score: 127
Period size: 30 Copynumber: 2.9 Consensus size: 30
21206290 ATTATTCTGA
*
21206300 TTACTGTTTTGGGCTAAGG-CC-CACACTG
1 TTACTGTATTGGGCTAAGGCCCACACACTG
21206328 TTACTGTATTGGGCTAAGGCCCACACACTG
1 TTACTGTATTGGGCTAAGGCCCACACACTG
* *
21206358 TTACTGTAATGGGCTAAGACCCACAC
1 TTACTGTATTGGGCTAAGGCCCACAC
21206384 TGTGCTGCTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 18 0.35
29 2 0.04
30 31 0.61
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (30 bp):
TTACTGTATTGGGCTAAGGCCCACACACTG
Found at i:21221974 original size:19 final size:19
Alignment explanation
Indices: 21221950--21221987 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
21221940 GCATCCACTG
21221950 AGCAGTCGCTGAAACCATC
1 AGCAGTCGCTGAAACCATC
21221969 AGCAGTCGCTGAAACCATC
1 AGCAGTCGCTGAAACCATC
21221988 TCGAAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.16
Consensus pattern (19 bp):
AGCAGTCGCTGAAACCATC
Found at i:21222306 original size:7 final size:7
Alignment explanation
Indices: 21222284--21222329 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
21222274 ATTATTTTCA
21222284 TAATTCTT
1 TAATT-TT
*
21222292 TTATTTT
1 TAATTTT
21222299 TAATTTT
1 TAATTTT
21222306 TAAATTTT
1 T-AATTTT
21222314 TAA-TTT
1 TAATTTT
21222320 TAATTTT
1 TAATTTT
21222327 TAA
1 TAA
21222330 GAAATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 6 0.18
7 17 0.50
8 11 0.32
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (7 bp):
TAATTTT
Found at i:21222312 original size:15 final size:13
Alignment explanation
Indices: 21222290--21222329 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
21222280 TTCATAATTC
21222290 TTTT-ATTTTTAA
1 TTTTAATTTTTAA
21222302 TTTTTAAATTTTTAA
1 -TTTT-AATTTTTAA
21222317 TTTTAATTTTTAA
1 TTTTAATTTTTAA
21222330 GAAATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 13 0.52
14 4 0.16
15 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAATTTTTAA
Found at i:21222320 original size:21 final size:21
Alignment explanation
Indices: 21222290--21222329 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
21222280 TTCATAATTC
*
21222290 TTTTATTTTTAATTTTTAAAT
1 TTTTAATTTTAATTTTTAAAT
21222311 TTTTAATTTTAATTTTTAA
1 TTTTAATTTTAATTTTTAA
21222330 GAAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTAATTTTAATTTTTAAAT
Found at i:21222324 original size:13 final size:14
Alignment explanation
Indices: 21222284--21222329 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
21222274 ATTATTTTCA
*
21222284 TAATTCTTTTATTTT
1 TAATT-TTTAATTTT
21222299 TAATTTTTAAATTTT
1 TAATTTTT-AATTTT
21222314 TAA-TTTTAATTTT
1 TAATTTTTAATTTT
21222327 TAA
1 TAA
21222330 GAAATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 9 0.31
14 7 0.24
15 13 0.45
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (14 bp):
TAATTTTTAATTTT
Found at i:21222341 original size:21 final size:19
Alignment explanation
Indices: 21222295--21222342 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 19
21222285 AATTCTTTTA
*
21222295 TTTTTAATTTTTAAATTTT
1 TTTTTAATTTTTAAAATTT
21222314 TAATTTTAATTTTTAAGAAATTT
1 T--TTTTAATTTTT-A-AAATTT
21222337 TTTTTA
1 TTTTTA
21222343 TGTTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
21 16 0.67
22 1 0.04
23 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTAATTTTTAAAATTT
Found at i:21224130 original size:30 final size:29
Alignment explanation
Indices: 21224096--21224187 Score: 84
Period size: 30 Copynumber: 3.1 Consensus size: 29
21224086 ACATTGTACT
21224096 TGGAAATTGTAATCACCGGCATAGAGTGCC
1 TGGAAATTGTAATCACCGGCATA-AGTGCC
* *
21224126 TGG-AATTG-AAACACCGGTACATAA-TACC
1 TGGAAATTGTAATCACCGG--CATAAGTGCC
*
21224154 TGGAAACTGTAATCACCGGCA-ACTAGTGCC
1 TGGAAATTGTAATCACCGGCATA--AGTGCC
21224184 TGGA
1 TGGA
21224188 GCACCCTAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
27 1 0.02
28 16 0.32
29 11 0.22
30 22 0.44
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (29 bp):
TGGAAATTGTAATCACCGGCATAAGTGCC
Found at i:21233229 original size:43 final size:43
Alignment explanation
Indices: 21233153--21233445 Score: 290
Period size: 43 Copynumber: 6.8 Consensus size: 43
21233143 TTTTTTCTAG
* * *
21233153 AAGCGTCGCTACAGGT-TTATTCTTTAGCGGCGTTTGTGACAA
1 AAGCGCCGCTAAAGGTCATATTCTTTAGCGGCGTTTGTGACAA
* * * *
21233195 AAGCGCCGTTAAAGATCATATTCTTTAGCGGCGTTTGTGGCTA
1 AAGCGCCGCTAAAGGTCATATTCTTTAGCGGCGTTTGTGACAA
* * * * *
21233238 AAGCGCCACTAAAGCTCACGA-TCTTTAGCGGTGTTTGT-ATCTA
1 AAGCGCCGCTAAAGGTCA-TATTCTTTAGCGGCGTTTGTGA-CAA
* * *
21233281 AAGCGCCGCTAAAGATCACGATT-TTTAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCA-TATTCTTTAGCGGCGTTTGTGACAA
** * **
21233324 AAATGCCGCTAAAGGTCA-AGCTCTTTAGCATCGTTTGTGACAA
1 AAGCGCCGCTAAAGGTCATA-TTCTTTAGCGGCGTTTGTGACAA
* * *
21233367 AAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTATAA
1 AAGCGCCGCTAAAGGTCATATTCTTTAGCGGCGTTTGTGACAA
* *
21233410 AAGCACCGCTAAAGGTCATAATCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCATATTCTTTAGCGGCGTTT
21233446 TTTCACATAA
Statistics
Matches: 207, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.00
42 13 0.06
43 190 0.92
44 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATATTCTTTAGCGGCGTTTGTGACAA
Found at i:21233362 original size:129 final size:129
Alignment explanation
Indices: 21233173--21233445 Score: 325
Period size: 129 Copynumber: 2.1 Consensus size: 129
21233163 ACAGGTTTAT
* * * * * *
21233173 TCTTTAGCGGCGTTTGTGACAAAAGCGCCGTTAAAGATCATATTCTTTAGCGGCGTTTGTGGCTA
1 TCTTTAGCGGCGTTTGTGACAAAAACGCCGCTAAAGATCATACTCTTTAGCAGCGTTTGTGACAA
* * * *
21233238 AAGCGCCACTAAAGCTCACGATCTTTAGCGGTGTTTG-TATCTAAAGCGCCGCTAAAGATCACGA
66 AAGCGCCACTAAAGCTCACGATCTTTAGCGGCGTTTGTTAT-AAAAGCACCGCTAAAGATCACAA
* * * * *
21233302 TTTTTAGCGGCGTTTGTGATAAAAATGCCGCTAAAGGTCA-AGCTCTTTAGCATCGTTTGTGACA
1 TCTTTAGCGGCGTTTGTGACAAAAACGCCGCTAAAGATCATA-CTCTTTAGCAGCGTTTGTGACA
* * * * * *
21233366 AAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTATAAAAGCACCGCTAAAGGTCATAA
65 AAAGCGCCACTAAAGCTCACGATCTTTAGCGGCGTTTGTTATAAAAGCACCGCTAAAGATCACAA
21233431 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
21233446 TTTCACATAA
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
128 1 0.01
129 116 0.97
130 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (129 bp):
TCTTTAGCGGCGTTTGTGACAAAAACGCCGCTAAAGATCATACTCTTTAGCAGCGTTTGTGACAA
AAGCGCCACTAAAGCTCACGATCTTTAGCGGCGTTTGTTATAAAAGCACCGCTAAAGATCACAA
Found at i:21242414 original size:3 final size:3
Alignment explanation
Indices: 21242399--21242475 Score: 104
Period size: 3 Copynumber: 25.7 Consensus size: 3
21242389 AGATTTGTTC
21242399 TTA TTA -TA GTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
21242444 TTA TTA TTA TTA TT- TATA TCA TTA TTC TTA TT
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TT
21242476 CGTGCATGTT
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
2 3 0.05
3 60 0.91
4 3 0.05
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:21244518 original size:22 final size:20
Alignment explanation
Indices: 21244489--21244535 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
21244479 AAATATATAA
* *
21244489 AAATATTTTTTATTAATATTT
1 AAATATTTATAATTAAT-TTT
21244510 ATAATATTTATAATTAATTTT
1 A-AATATTTATAATTAATTTT
21244531 AAATA
1 AAATA
21244536 AAAATACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.17
21 5 0.22
22 14 0.61
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAATATTTATAATTAATTTT
Found at i:21245036 original size:25 final size:26
Alignment explanation
Indices: 21244985--21245037 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
21244975 CTAATCCTAT
* *
21244985 AAATTCAAAAAAAATATGATTATAAA
1 AAATTCAAAAAAAATATAAATATAAA
21245011 AAATTC-AAAAAAATAATAAATA-AAA
1 AAATTCAAAAAAAAT-ATAAATATAAA
21245036 AA
1 AA
21245038 TTACATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (26 bp):
AAATTCAAAAAAAATATAAATATAAA
Found at i:21245037 original size:26 final size:26
Alignment explanation
Indices: 21244985--21245037 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21244975 CTAATCCTAT
* * *
21244985 AAATTCAAAAAAAATATGATTATAAA
1 AAATTCAAAAAAAATATAAATAAAAA
21245011 AAATTC-AAAAAAATAATAAATAAAAA
1 AAATTCAAAAAAAAT-ATAAATAAAAA
21245037 A
1 A
21245038 TTACATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (26 bp):
AAATTCAAAAAAAATATAAATAAAAA
Found at i:21248886 original size:15 final size:15
Alignment explanation
Indices: 21248866--21248911 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
21248856 ATAGATATGA
*
21248866 TATTTTCAATTTTTT
1 TATTTTTAATTTTTT
*
21248881 TATTTTTATTTTTTT
1 TATTTTTAATTTTTT
* *
21248896 TGTTTTTTATTTTTT
1 TATTTTTAATTTTTT
21248911 T
1 T
21248912 CAAATTGTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (15 bp):
TATTTTTAATTTTTT
Found at i:21256123 original size:46 final size:46
Alignment explanation
Indices: 21256056--21256276 Score: 252
Period size: 46 Copynumber: 4.9 Consensus size: 46
21256046 CTTATTATTA
* * * * *
21256056 CTATATTCTCCAGTCCACAACATATGCAGGAGTTGGGAATCTAAAC
1 CTATATTCTCCAGTCTACAACATATGCAGGAGCTAGGAACCTAAAT
** * * *
21256102 CTATATTCTCCAGTCCGCAACATATGCAGGAGTTGGGAACCTGAAT
1 CTATATTCTCCAGTCTACAACATATGCAGGAGCTAGGAACCTAAAT
* * *
21256148 TTGTATTCTCCAGTCTACAACATATGCAGGAGCTAGAAACCTAAAT
1 CTATATTCTCCAGTCTACAACATATGCAGGAGCTAGGAACCTAAAT
* * *
21256194 CTATATTCTCTAGTCTGA-AACATATACA-GA-CTAGGAACCTGAAT
1 CTATATTCTCCAGTCT-ACAACATATGCAGGAGCTAGGAACCTAAAT
*
21256238 CTGTATTCTCCAGTCTACAACATATGCAGGAGCT-GGAAC
1 CTATATTCTCCAGTCTACAACATATGCAGGAGCTAGGAAC
21256277 TTGGGCAAGA
Statistics
Matches: 150, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 35 0.23
45 9 0.06
46 104 0.69
47 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (46 bp):
CTATATTCTCCAGTCTACAACATATGCAGGAGCTAGGAACCTAAAT
Found at i:21256265 original size:90 final size:92
Alignment explanation
Indices: 21256059--21256271 Score: 295
Period size: 92 Copynumber: 2.3 Consensus size: 92
21256049 ATTATTACTA
* * * * * *
21256059 TATTCTCCAGTCCACAACATATGCAGGAGTTGGGAATCTAAACCTATATTCTCCAGTCCGCAACA
1 TATTCTCCAGTCTACAACATATGCAGGAGCTAGAAACCTAAACCTATATTCTCCAGTCCGAAACA
* * * *
21256124 TATGCAGGAGTTGGGAACCTGAATTTG
66 TATACAGGAGCTAGGAACCTGAATCTG
* * *
21256151 TATTCTCCAGTCTACAACATATGCAGGAGCTAGAAACCTAAATCTATATTCTCTAGTCTGAAACA
1 TATTCTCCAGTCTACAACATATGCAGGAGCTAGAAACCTAAACCTATATTCTCCAGTCCGAAACA
21256216 TATACA-GA-CTAGGAACCTGAATCTG
66 TATACAGGAGCTAGGAACCTGAATCTG
21256241 TATTCTCCAGTCTACAACATATGCAGGAGCT
1 TATTCTCCAGTCTACAACATATGCAGGAGCT
21256272 GGAACTTGGG
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
90 45 0.42
91 2 0.02
92 61 0.56
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (92 bp):
TATTCTCCAGTCTACAACATATGCAGGAGCTAGAAACCTAAACCTATATTCTCCAGTCCGAAACA
TATACAGGAGCTAGGAACCTGAATCTG
Found at i:21266919 original size:18 final size:18
Alignment explanation
Indices: 21266886--21266920 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
21266876 CCTATTGGTA
21266886 TTTATTTTAATATTTTAT
1 TTTATTTTAATATTTTAT
*
21266904 TTTATTTTAATTTTTTA
1 TTTATTTTAATATTTTA
21266921 GGAAGTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTTAATATTTTAT
Found at i:21267196 original size:26 final size:26
Alignment explanation
Indices: 21267127--21267198 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
21267117 CAAGATTCAT
* * * *
21267127 AAATTTTAATTTAGTTATATTTGATA
1 AAATTTTAATTTTGTTTTAATTAATA
*
21267153 AAATTTGAATTTAT-TTTTAATTAATA
1 AAATTTTAATTT-TGTTTTAATTAATA
*
21267179 AAATTTTTATTTTGTTTTAA
1 AAATTTTAATTTTGTTTTAA
21267199 ATTAGAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.03
26 36 0.97
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.57
Consensus pattern (26 bp):
AAATTTTAATTTTGTTTTAATTAATA
Found at i:21270384 original size:13 final size:13
Alignment explanation
Indices: 21270366--21270392 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21270356 GTTAATTATG
21270366 TGTGTGAAAATTT
1 TGTGTGAAAATTT
21270379 TGTGTGAAAATTT
1 TGTGTGAAAATTT
21270392 T
1 T
21270393 ATCGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:21283510 original size:12 final size:12
Alignment explanation
Indices: 21283493--21283517 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21283483 AAATTGAGAC
21283493 TATCCCTTCAGA
1 TATCCCTTCAGA
21283505 TATCCCTTCAGA
1 TATCCCTTCAGA
21283517 T
1 T
21283518 TTTGTTGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:21284176 original size:44 final size:44
Alignment explanation
Indices: 21284111--21284245 Score: 193
Period size: 44 Copynumber: 3.1 Consensus size: 44
21284101 GAAGATAATA
*
21284111 AATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAA-ATT-TG
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
21284153 TAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
1 -AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
* * * *
21284199 AATCCTATCTCCCTGGTTAGCAATGAAATAGGTTGAAGATTGCG
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
21284243 AAT
1 AAT
21284246 TTTACTTTTC
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
43 2 0.02
44 75 0.89
45 5 0.06
46 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTG
Found at i:21284549 original size:169 final size:169
Alignment explanation
Indices: 21284270--21284738 Score: 749
Period size: 169 Copynumber: 2.8 Consensus size: 169
21284260 GTTATAACAA
* *
21284270 AGCAGATTAAAGCTGAGGGCAACGAATCTTATCTCCCAGGCGTTAAGACTTGAAAAAGCTGAAGT
1 AGCAGATTAAAGCTGAGGGCAACGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAGT
21284335 GGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGGCATTATAGTGGAACAGATTAAAG
66 GGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGGCATTATAGTGGAACAGATTAAAG
* * *
21284400 CTAAAGGTAATGAATCTTGTTTCCCTAGCATTGCGGCGG
131 CTAAAGGTAACGAATCTTGTTTCCCTAGCATTACAGCGG
* *
21284439 AGCAGATTAAAGCTGAGGGCAACGAATCTTATCTCCTTGGTGTTAAGACTTGAAATAGCTGAAGT
1 AGCAGATTAAAGCTGAGGGCAACGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAGT
* * *
21284504 GGAGCGGATTAAAGTTGTGGGCAGCGAATCCTATTTCTTTGGCATTATAGTGGAACAGATTAAAG
66 GGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGGCATTATAGTGGAACAGATTAAAG
* *
21284569 CTAGAGGTAGCGAATCTTGTTTCCCTAGCATTACAGCGG
131 CTAAAGGTAACGAATCTTGTTTCCCTAGCATTACAGCGG
* * * *
21284608 AGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTAAAGC
1 AGCAGATTAAAGCTGAGGGCAACGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAGT
** * * *
21284673 GGAGTAGATTAAAGCTATGGGCAGCAAATCCTATCTCTTTGGCATTACAGTGGAGCAGATTAAAG
66 GGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGGCATTATAGTGGAACAGATTAAAG
21284738 C
131 C
21284739 CACAACGATG
Statistics
Matches: 274, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
169 274 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (169 bp):
AGCAGATTAAAGCTGAGGGCAACGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAGT
GGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCTTTGGCATTATAGTGGAACAGATTAAAG
CTAAAGGTAACGAATCTTGTTTCCCTAGCATTACAGCGG
Found at i:21284581 original size:51 final size:51
Alignment explanation
Indices: 21284523--21284645 Score: 131
Period size: 51 Copynumber: 2.4 Consensus size: 51
21284513 TAAAGTTGTG
** * * *
21284523 GGCAGCGAATCCTATTTCTTTGGCATTATAGTGGAACAGATTAAAGCT-AGA
1 GGCAGCGAATCCTATTTCCCTAGCATTACAGCGGAACAGATTAAAGCTGA-A
* * * *
21284574 GGTAGCGAATCTTGTTTCCCTAGCATTACAGCGGAGCAGATTAAAGCTGAA
1 GGCAGCGAATCCTATTTCCCTAGCATTACAGCGGAACAGATTAAAGCTGAA
* *
21284625 GGCAGCGAATCTTATCTCCCT
1 GGCAGCGAATCCTATTTCCCT
21284646 GGCGTTAAGA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 58 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (51 bp):
GGCAGCGAATCCTATTTCCCTAGCATTACAGCGGAACAGATTAAAGCTGAA
Found at i:21284803 original size:50 final size:50
Alignment explanation
Indices: 21284728--21284904 Score: 119
Period size: 50 Copynumber: 3.5 Consensus size: 50
21284718 TACAGTGGAG
* * **
21284728 CAGATTAAAGCCACAACGATGAATCTTACTCCCCTGGCGGTGTAGTAGAA
1 CAGATTGAAGCTACAACGGCGAATCTTACTCCCCTGGCGGTGTAGTAGAA
* ** ** * *
21284778 CAGATTGAAGCTACAACGGCGAATCTCGT-TTCCCC-AACATTGCAATTA-AA
1 CAGATTGAAGCTACAACGGCGAATCT--TACTCCCCTGGCGGTG-TAGTAGAA
* * * * * * *
21284828 AAAATTGAAG-TCGCAACGGCAAATCTTACTTCTCTGGCGGTGTAGTGGAA
1 CAGATTGAAGCT-ACAACGGCGAATCTTACTCCCCTGGCGGTGTAGTAGAA
*
21284878 CAGATTGAAGCTACAACGGTGAATCTT
1 CAGATTGAAGCTACAACGGCGAATCTT
21284905 GTTTCCCCAA
Statistics
Matches: 89, Mismatches: 30, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
48 1 0.01
49 6 0.07
50 72 0.81
51 9 0.10
52 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.24
Consensus pattern (50 bp):
CAGATTGAAGCTACAACGGCGAATCTTACTCCCCTGGCGGTGTAGTAGAA
Found at i:21284865 original size:100 final size:100
Alignment explanation
Indices: 21284749--21284929 Score: 308
Period size: 100 Copynumber: 1.8 Consensus size: 100
21284739 CACAACGATG
21284749 AATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACAACGGCGAATCTCGTTTCCCCA
1 AATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACAACGGCGAATCTCGTTTCCCCA
21284814 ACATTGCAATTAAAAAAATTGAAGTCGCAACGGCA
66 ACATTGCAATTAAAAAAATTGAAGTCGCAACGGCA
* * * * *
21284849 AATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCA
1 AATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACAACGGCGAATCTCGTTTCCCCA
*
21284914 ACATTGCAATTTAAAA
66 ACATTGCAATTAAAAA
21284930 GACTGAAGAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (100 bp):
AATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACAACGGCGAATCTCGTTTCCCCA
ACATTGCAATTAAAAAAATTGAAGTCGCAACGGCA
Found at i:21285041 original size:44 final size:43
Alignment explanation
Indices: 21284945--21285101 Score: 142
Period size: 44 Copynumber: 3.7 Consensus size: 43
21284935 AAGATGACGA
* *
21284945 ATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCAAT-A-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT-AAACC--TCAG
* *
21284989 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT-AAACCTCAG
* * * * * *
21285033 ATCTTATCTCTCTGAAGGTGCAGTAGAGTAGA-T-CACATCGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAACCTCAG
* *
21285074 GTTTTATCTCCCTGAAGTTGCAGTGGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAG
21285102 CAGACTCAAG
Statistics
Matches: 93, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 28 0.30
42 1 0.01
43 2 0.02
44 62 0.67
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAACCTCAG
Found at i:21293140 original size:58 final size:55
Alignment explanation
Indices: 21293035--21293151 Score: 126
Period size: 58 Copynumber: 2.1 Consensus size: 55
21293025 CCCAAAAATC
* * * * *
21293035 GATTGTTTATATGTTTAAATCAATTGTTATGGTGGAATATTATTTCTTCTTCTGAATA
1 GATTGTTTATATGTTTAAATCAATTATTATAGTAGAACATTACTTC-T-TTC-GAATA
** * *
21293093 GATTGTTTATATGTTTAAATTGATTATTATATTAGAACATTGCTTCTTTCGAATA
1 GATTGTTTATATGTTTAAATCAATTATTATAGTAGAACATTACTTCTTTCGAATA
21293148 GATT
1 GATT
21293152 ATTATATTAG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
55 9 0.18
56 3 0.06
57 1 0.02
58 37 0.74
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.50
Consensus pattern (55 bp):
GATTGTTTATATGTTTAAATCAATTATTATAGTAGAACATTACTTCTTTCGAATA
Found at i:21293174 original size:34 final size:34
Alignment explanation
Indices: 21293114--21293185 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
21293104 TGTTTAAATT
*
21293114 GATTATTATATTAGAACATTGCTTCTTTCGAATA
1 GATTATTATATTAGAACAATGCTTCTTTCGAATA
* * * *
21293148 GATTATTATATTAGAATAATGTTTCTTTTGAATC
1 GATTATTATATTAGAACAATGCTTCTTTCGAATA
21293182 GATT
1 GATT
21293186 GTTTATATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.47
Consensus pattern (34 bp):
GATTATTATATTAGAACAATGCTTCTTTCGAATA
Found at i:21295017 original size:3 final size:3
Alignment explanation
Indices: 21295009--21295039 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
21294999 CCACACACTG
21295009 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
21295040 TGCCCTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:21302648 original size:4 final size:4
Alignment explanation
Indices: 21302639--21302665 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
21302629 ACCGAGTATG
21302639 CATT CATT CATT CATT CATT CATT CAT
1 CATT CATT CATT CATT CATT CATT CAT
21302666 ATCAGTATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (4 bp):
CATT
Found at i:21313907 original size:21 final size:21
Alignment explanation
Indices: 21313881--21313920 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
21313871 GTTCTTAGAT
21313881 AAATTAGTTTAGTAATTTTGA
1 AAATTAGTTTAGTAATTTTGA
21313902 AAATTAGTTTAGTAATTTT
1 AAATTAGTTTAGTAATTTT
21313921 AGATTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (21 bp):
AAATTAGTTTAGTAATTTTGA
Found at i:21326465 original size:45 final size:43
Alignment explanation
Indices: 21326383--21326466 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 43
21326373 TAGTTCTTTA
21326383 TTTTTATTTTTATTTCATTTTACTTTATTATTCTTATTAATAT
1 TTTTTATTTTTATTTCATTTTACTTTATTATTCTTATTAATAT
* *
21326426 TTTTTGTTTTTATTTTC-TATTTATTCTTATTATTCTTATTA
1 TTTTTATTTTTA-TTTCAT-TTTACT-TTATTATTCTTATTA
21326467 TTTTCTTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 12 0.33
44 9 0.25
45 15 0.42
ACGTcount: A:0.20, C:0.07, G:0.01, T:0.71
Consensus pattern (43 bp):
TTTTTATTTTTATTTCATTTTACTTTATTATTCTTATTAATAT
Found at i:21334022 original size:21 final size:22
Alignment explanation
Indices: 21333997--21334044 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
21333987 TTTAGGCTTG
*
21333997 GTAGAGACTTTA-TTGCGCATT
1 GTAGAGACTGTAGTTGCGCATT
* *
21334018 TTAGAGACTGTAGTTGGGCATT
1 GTAGAGACTGTAGTTGCGCATT
21334040 GTAGA
1 GTAGA
21334045 ACTCCCAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.35
Consensus pattern (22 bp):
GTAGAGACTGTAGTTGCGCATT
Found at i:21339445 original size:25 final size:26
Alignment explanation
Indices: 21339410--21339473 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
21339400 TTTCAAATTC
21339410 ATAT-TTTTATAA-TATATATTATA-G
1 ATATATTTTATAATTAT-TATTATAGG
* *
21339434 ATATATTTTATAATTATTTTTCTAGG
1 ATATATTTTATAATTATTATTATAGG
21339460 A-ATATTTTATAATT
1 ATATATTTTATAATT
21339474 TCATAATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 4 0.11
25 26 0.74
26 5 0.14
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (26 bp):
ATATATTTTATAATTATTATTATAGG
Found at i:21339451 original size:11 final size:12
Alignment explanation
Indices: 21339410--21339453 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 12
21339400 TTTCAAATTC
21339410 ATAT-TTTTATA
1 ATATATTTTATA
*
21339421 ATATATATTATA
1 ATATATTTTATA
21339433 GATATATTTTATA
1 -ATATATTTTATA
21339446 AT-TATTTT
1 ATATATTTT
21339454 TCTAGGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 10 0.34
12 8 0.28
13 11 0.38
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (12 bp):
ATATATTTTATA
Found at i:21341868 original size:26 final size:26
Alignment explanation
Indices: 21341837--21341887 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21341827 CATTGAAGTT
* *
21341837 TGGTTTATCTTTTTACA-TGCATGAAG
1 TGGTTTATATTTATACACT-CATGAAG
21341863 TGGTTTATATTTATACACTCATGAA
1 TGGTTTATATTTATACACTCATGAA
21341888 ATCATAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (26 bp):
TGGTTTATATTTATACACTCATGAAG
Found at i:21353485 original size:28 final size:29
Alignment explanation
Indices: 21353432--21353487 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
21353422 TATAGTAATT
* *
21353432 TTTTTAAAATTTTAAATTAAATTAATAAA
1 TTTTAAAAATTTTAAAATAAATTAATAAA
*
21353461 TTTTAAAAATTTTAAAATATA-TAATAA
1 TTTTAAAAATTTTAAAATAAATTAATAA
21353488 TAATTTTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
TTTTAAAAATTTTAAAATAAATTAATAAA
Found at i:21354775 original size:14 final size:15
Alignment explanation
Indices: 21354751--21354786 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
21354741 AAAAGAGTTG
*
21354751 TGATTATTTAACAAA
1 TGATCATTTAACAAA
21354766 T-ATCATTTAACAAA
1 TGATCATTTAACAAA
21354780 TGATCAT
1 TGATCAT
21354787 ATTGGAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (15 bp):
TGATCATTTAACAAA
Found at i:21357774 original size:54 final size:54
Alignment explanation
Indices: 21357679--21357836 Score: 131
Period size: 54 Copynumber: 2.9 Consensus size: 54
21357669 GAGTCTCCAC
* * *** * *
21357679 CCATGTAACTCACTGAGTTGGGT-CACACGATTATGTTGCAAGCCGTGTGCCAGT
1 CCATGTAACACACTGACTT-GGTACACACGACCGTGTAGCAAGCCGTGTGCCAGG
* ** * * **
21357733 CCATGTAACTCTTTGACTTGCG-ACACACGACCGTGTCGCAAGCCATGTGCTGGG
1 CCATGTAACACACTGACTTG-GTACACACGACCGTGTAGCAAGCCGTGTGCCAGG
* *
21357787 CCGTGTAACACACTGACTTGGTACACACGACCGTGTAGCCAGGCCGTGTG
1 CCATGTAACACACTGACTTGGTACACACGACCGTGTAG-CAAGCCGTGTG
21357837 ACAGCCCGTG
Statistics
Matches: 82, Mismatches: 18, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
53 2 0.02
54 71 0.87
55 9 0.11
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (54 bp):
CCATGTAACACACTGACTTGGTACACACGACCGTGTAGCAAGCCGTGTGCCAGG
Found at i:21358901 original size:15 final size:15
Alignment explanation
Indices: 21358877--21358934 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
21358867 ACATAAGTTT
21358877 GTTTTATTTTCATTA
1 GTTTTATTTTCATTA
* * *
21358892 GTTTTGTTTTTTTATTTT
1 G-TTT-TATTTTCA-TTA
21358910 GTTTTATTTTCATTA
1 GTTTTATTTTCATTA
*
21358925 GTTTTGTTTT
1 GTTTTATTTT
21358935 TTATTATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
15 12 0.36
16 9 0.27
17 9 0.27
18 3 0.09
ACGTcount: A:0.12, C:0.03, G:0.10, T:0.74
Consensus pattern (15 bp):
GTTTTATTTTCATTA
Found at i:21358916 original size:33 final size:33
Alignment explanation
Indices: 21358874--21358936 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
21358864 GATACATAAG
21358874 TTTGTTTTATTTTCATTAGTTTTGTTTTTTTAT
1 TTTGTTTTATTTTCATTAGTTTTGTTTTTTTAT
21358907 TTTGTTTTATTTTCATTAGTTTTGTTTTTT
1 TTTGTTTTATTTTCATTAGTTTTGTTTTTT
21358937 ATTATTTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.11, C:0.03, G:0.10, T:0.76
Consensus pattern (33 bp):
TTTGTTTTATTTTCATTAGTTTTGTTTTTTTAT
Found at i:21358951 original size:33 final size:33
Alignment explanation
Indices: 21358874--21358952 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
21358864 GATACATAAG
*
21358874 TTTGTTTTATTTTCATTAGTTTTGTTTTTTTAT
1 TTTGTTCTATTTTCATTAGTTTTGTTTTTTTAT
*
21358907 TTTGTTTTATTTTCATTAGTTTTG-TTTTTTAT
1 TTTGTTCTATTTTCATTAGTTTTGTTTTTTTAT
21358939 TATT-TTACTATTTT
1 T-TTGTT-CTATTTT
21358953 ACCCTTTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
32 11 0.26
33 32 0.74
ACGTcount: A:0.14, C:0.04, G:0.08, T:0.75
Consensus pattern (33 bp):
TTTGTTCTATTTTCATTAGTTTTGTTTTTTTAT
Found at i:21363101 original size:50 final size:50
Alignment explanation
Indices: 21363021--21363662 Score: 171
Period size: 44 Copynumber: 13.5 Consensus size: 50
21363011 AATCCTATAC
* *
21363021 CCCTGAAGTTACAGTGG-G-ATGAATTAAAGCCATCATGGCGAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-G-ATTGAAGCCATCATGGCGAATCTTATCT
* *
21363071 CCCTAAAGTTGCAGTGGAGCAGATTGAAGCCA-C-T----AATCCTATAC-
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTAT-CT
* * *
21363115 CCCTGAAGTTGCAATGG-G-ATGGATTAAAGTCATCATGGCGAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA--GATTGAAGCCATCATGGCGAATCTTATCT
* * * *
21363165 CCCTGAAGATGCAGTGGAACAGATTGAAGCCACCA--GC----CTTTTCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
* * * * * *
21363209 CCTTAAAGTTGCAGCGGAGCAGATTTAAG--AT-A--GAGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
** * * * * * * *
21363254 CCCTGGCGTTGCAATGGAACAAATTAAAGCTACAAATTATGGCGGATCTCATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ATCATGGCGAATCTTATCT
* * * * * * * * *
21363308 TCTTCAAGCTGTAGTGTAGCAGACTGAAGCCA-C----C-AACCTTATAT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
* *
21363352 CCCTGAAGTTGCAGTGGAGCAGACTGAAG--A-CA--GCGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
** * * * * *
21363397 CCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ATCATGGCGAATCTTATCT
* * * *
21363451 TCCTAAAGTTGCAGTGGAGCAGATTCAAGCCA-C-TAGC----CTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
* * * * *
21363495 CCCTGAAATTGTAGTGGAGCAGACTGAA---AACA--GCGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
* * * * * * *
21363540 CCCTGACGTTGCAATGGAACAGATT-AGAGTTACAAATTATGGAGGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGA-AG---C-CATCATGGCGAATCTTATCT
* * * *
21363594 ACTTGAAGTTGCAGTGGAGCATATTGAAGCCA-C----C-AATCCTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
* *
21363638 TCCTGAAGTTGCAGTGGAGTAGATT
1 CCCTGAAGTTGCAGTGGAGCAGATT
21363663 AAAACGATGA
Statistics
Matches: 420, Mismatches: 116, Indels: 118
0.64 0.18 0.18
Matches are distributed among these distances:
41 5 0.01
42 5 0.01
43 1 0.00
44 149 0.35
45 85 0.20
46 1 0.00
48 6 0.01
49 2 0.00
50 60 0.14
51 6 0.01
52 8 0.02
54 91 0.22
55 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (50 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCATGGCGAATCTTATCT
Found at i:21363178 original size:94 final size:94
Alignment explanation
Indices: 21363011--21363197 Score: 311
Period size: 94 Copynumber: 2.0 Consensus size: 94
21363001 TAAAACCATA
*
21363011 AATCCTATACCCCTGAAGTTACAGTGGGATGAATTAAAGCCATCATGGCGAATCTTATCTCCCTA
1 AATCCTATACCCCTGAAGTTACAATGGGATGAATTAAAGCCATCATGGCGAATCTTATCTCCCTA
* *
21363076 AAGTTGCAGTGGAGCAGATTGAAGCCACT
66 AAGATGCAGTGGAACAGATTGAAGCCACT
* * * *
21363105 AATCCTATACCCCTGAAGTTGCAATGGGATGGATTAAAGTCATCATGGCGAATCTTATCTCCCTG
1 AATCCTATACCCCTGAAGTTACAATGGGATGAATTAAAGCCATCATGGCGAATCTTATCTCCCTA
21363170 AAGATGCAGTGGAACAGATTGAAGCCAC
66 AAGATGCAGTGGAACAGATTGAAGCCAC
21363198 CAGCCTTTTC
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (94 bp):
AATCCTATACCCCTGAAGTTACAATGGGATGAATTAAAGCCATCATGGCGAATCTTATCTCCCTA
AAGATGCAGTGGAACAGATTGAAGCCACT
Found at i:21363361 original size:143 final size:143
Alignment explanation
Indices: 21363064--21363656 Score: 658
Period size: 143 Copynumber: 4.2 Consensus size: 143
21363054 CATGGCGAAT
* * * * * ** **
21363064 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCA-CTAATCCTATACCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* *** * * * * * * *
21363128 ATGGGATGGATTAAAG-T-C--ATCATGGCGAATCTTATCTCCCTGAAGATGCAGTGGAACAGAT
66 ATGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCTTAAAGTTGCAGTGGAGCAGAT
*
21363189 TGAAGCCACCAGC
131 TGAAGCCACCAAC
* * * * * * * *
21363202 CTTTTCTCCTTAAAGTTGCAGCGGAGCAGATTTAAGATAGAGAATCTTATTTCCCTGGCGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* * * * * *
21363267 ATGGAACAAATTAAAGCTACAAATTATGGCGGATCTCATCTTCTTCAAGCTGTAGTGTAGCAGAC
66 ATGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCTTAAAGTTGCAGTGGAGCAGAT
21363332 TGAAGCCACCAAC
131 TGAAGCCACCAAC
*
21363345 CTTATATCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* *
21363410 GTGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGAT
66 ATGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCTTAAAGTTGCAGTGGAGCAGAT
* * *
21363475 TCAAGCCACTAGC
131 TGAAGCCACCAAC
* * * *
21363488 CTTATCTCCCTGAAATTGTAGTGGAGCAGACTGAAAACAGCGAATCTTATTTCCCTGACGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* * * * * * *
21363553 ATGGAACAGATTAGAGTTACAAATTATGGAGGATCTTATCTACTTGAAGTTGCAGTGGAGCATAT
66 ATGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCTTAAAGTTGCAGTGGAGCAGAT
21363618 TGAAGCCACCAATC
131 TGAAGCCACCAA-C
*
21363632 C-TATCTTCCTGAAGTTGCAGTGGAG
1 CTTATCTCCCTGAAGTTGCAGTGGAG
21363657 TAGATTAAAA
Statistics
Matches: 380, Mismatches: 69, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
138 33 0.09
139 30 0.08
140 1 0.00
141 1 0.00
143 313 0.82
144 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (143 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
ATGGAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCTTAAAGTTGCAGTGGAGCAGAT
TGAAGCCACCAAC
Found at i:21363408 original size:45 final size:44
Alignment explanation
Indices: 21363320--21363414 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
21363310 TTCAAGCTGT
* *
21363320 AGTGTAGCAGACTGAAGCCACCAACCTTATATCCCTGAAGTTGC
1 AGTGGAGCAGACTGAAGACACCAACCTTATATCCCTGAAGTTGC
* * * **
21363364 AGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGC
1 AGTGGAGCAGACTGAAGACA-CCAACCTTATATCCCTGAAGTTGC
21363409 AGTGGA
1 AGTGGA
21363415 ACAAATTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 18 0.42
45 25 0.58
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (44 bp):
AGTGGAGCAGACTGAAGACACCAACCTTATATCCCTGAAGTTGC
Found at i:21363984 original size:20 final size:18
Alignment explanation
Indices: 21363944--21363986 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
21363934 CTAGGCCCAA
*
21363944 CAAAATAAATTACAAAGC
1 CAAAATAAATTACAAACC
*
21363962 CAAAATAAACATTAGAAACC
1 CAAAAT-AA-ATTACAAACC
21363982 CAAAA
1 CAAAA
21363987 ATTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 13 0.62
ACGTcount: A:0.63, C:0.19, G:0.05, T:0.14
Consensus pattern (18 bp):
CAAAATAAATTACAAACC
Found at i:21369649 original size:94 final size:94
Alignment explanation
Indices: 21369486--21369663 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 94
21369476 ACCACAAATC
* *
21369486 CTATACCCCTGAAGTTACAATGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGT
1 CTATACCCCTAAAGTTACAATGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGA
*
21369551 TGCAGTGGAGCAGATTAAAGCAACTAATT
66 TGCAGTGAAGCAGATTAAAGCAACTAATT
* * * * *
21369580 CTATACCCCTAAAGTTGCAGTGGGATGGATTGAAGTCATCATGGCGAATCTTATCTCCCTGAAGA
1 CTATACCCCTAAAGTTACAATGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGA
*
21369645 TGCAGTGAAGTAGATTAAA
66 TGCAGTGAAGCAGATTAAA
21369664 ACCACCAGCC
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (94 bp):
CTATACCCCTAAAGTTACAATGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGA
TGCAGTGAAGCAGATTAAAGCAACTAATT
Found at i:21369689 original size:94 final size:94
Alignment explanation
Indices: 21369486--21369693 Score: 240
Period size: 94 Copynumber: 2.2 Consensus size: 94
21369476 ACCACAAATC
* * * *
21369486 CTATACCCCTGAAGTTACAATGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGT
1 CTATACCCATGAAGTTGCAGTGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGA
* * * *
21369551 TGCAGTGGAGCAGATTAAAGCAACTAATT
66 TGCAGTGAAGCAGATTAAAACAACCAACT
* * * * *
21369580 CTATACCCCTAAAGTTGCAGTGGGATGGATTGAAGTCATCATGGCGAATCTTATCTCCCTGAAGA
1 CTATACCCATGAAGTTGCAGTGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGA
* * *
21369645 TGCAGTGAAGTAGATTAAAACCACCAGC-
66 TGCAGTGAAGCAGATTAAAACAACCAACT
21369673 CT-TATCTCCATGAAGTTGCAG
1 CTATA-C-CCATGAAGTTGCAG
21369694 CGGAGCAAAC
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
92 2 0.02
93 3 0.03
94 91 0.95
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (94 bp):
CTATACCCATGAAGTTGCAGTGGGATGGATTGAAGCCATCATGACGAATCTTATCTCCCTAAAGA
TGCAGTGAAGCAGATTAAAACAACCAACT
Found at i:21370020 original size:18 final size:20
Alignment explanation
Indices: 21369997--21370039 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
21369987 CTAAGCCTAA
*
21369997 CAAAAT-AA-ATTACAAAGC
1 CAAAATAAACATTACAAACC
21370015 CAAAATAAACATTACAAACC
1 CAAAATAAACATTACAAACC
21370035 CAAAA
1 CAAAA
21370040 ATTAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 14 0.64
ACGTcount: A:0.63, C:0.21, G:0.02, T:0.14
Consensus pattern (20 bp):
CAAAATAAACATTACAAACC
Found at i:21370216 original size:15 final size:16
Alignment explanation
Indices: 21370187--21370216 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21370177 AGACACGCAA
21370187 AGTAGCAACAGAGAAC
1 AGTAGCAACAGAGAAC
21370203 AGTAGCAA-AGAGAA
1 AGTAGCAACAGAGAA
21370217 ATAATAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.13, G:0.27, T:0.07
Consensus pattern (16 bp):
AGTAGCAACAGAGAAC
Found at i:21372536 original size:21 final size:21
Alignment explanation
Indices: 21372511--21372552 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
21372501 ATATACATGG
21372511 ATTGCCACGTAGATGACAGGT
1 ATTGCCACGTAGATGACAGGT
21372532 ATTGCCACGTAGATGACAGGT
1 ATTGCCACGTAGATGACAGGT
21372553 CAACATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (21 bp):
ATTGCCACGTAGATGACAGGT
Found at i:21372806 original size:19 final size:20
Alignment explanation
Indices: 21372768--21372808 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
21372758 AGGTGATTTG
* *
21372768 ATAAAAAAATAAGTTTAAAA
1 ATAAAAAAATAAGATGAAAA
21372788 ATAAAAAAA-AAGATGAAAA
1 ATAAAAAAATAAGATGAAAA
21372807 AT
1 AT
21372809 TAGATGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (20 bp):
ATAAAAAAATAAGATGAAAA
Found at i:21376849 original size:21 final size:21
Alignment explanation
Indices: 21376811--21376858 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
21376801 TAATATTAAG
* **
21376811 ATTATTGTTGTTGTTATTATA
1 ATTATTGTTATTACTATTATA
* *
21376832 ATTATTGTTATTACTATTTTC
1 ATTATTGTTATTACTATTATA
21376853 ATTATT
1 ATTATT
21376859 ATTAATATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.04, G:0.08, T:0.62
Consensus pattern (21 bp):
ATTATTGTTATTACTATTATA
Found at i:21377222 original size:29 final size:28
Alignment explanation
Indices: 21377188--21377263 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 28
21377178 TTCTTTCAAA
* *
21377188 TATTTTAACATCTTTAATTCATTTCAACT
1 TATTTTAATAT-TTTAATTCATTTAAACT
* *
21377217 TATTTTAATATTGTTAATTTATTTAAATT
1 TATTTTAATATT-TTAATTCATTTAAACT
*
21377246 TGTTTTAATATTTTAATT
1 TATTTTAATATTTTAATT
21377264 TACATATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 7 0.17
29 34 0.83
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.59
Consensus pattern (28 bp):
TATTTTAATATTTTAATTCATTTAAACT
Found at i:21380130 original size:113 final size:113
Alignment explanation
Indices: 21379905--21380136 Score: 369
Period size: 113 Copynumber: 2.1 Consensus size: 113
21379895 TCCCAATATT
* *
21379905 AATAATATGTAATACAAGAGGAACTAATGACTTTTGGTCAATAATATGAACCTGATATATTAGAT
1 AATATTATGTAATACAAGAGGAACTAATGACTTTAGGTCAATAATATGAACCTGATATATTAGAT
* *
21379970 GAGCAACTGATAAAAGTGCTGGGTAATATGTTTAGGTGATGCTGAGAG
66 GAGCAACTGATAAAAGTGCCGGGTAATATGTTTAGGTGATGCAGAGAG
* *
21380018 AATATTATGTAATACAAGAGGAACTAATGACTTTAGGTC-ATGATATGAATCTGATATATTAGAT
1 AATATTATGTAATACAAGAGGAACTAATGACTTTAGGTCAATAATATGAACCTGATATATTAGAT
*
21380082 GAGCAACTGAT-AAAGTGCCGGGTAATATTTTTAGGTGATGCCGAGAGAG
66 GAGCAACTGATAAAAGTGCCGGGTAATATGTTTAGGTGATG-C-AGAGAG
21380131 AATATT
1 AATATT
21380137 GGAGTTTACT
Statistics
Matches: 110, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
111 27 0.25
112 35 0.32
113 48 0.44
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.31
Consensus pattern (113 bp):
AATATTATGTAATACAAGAGGAACTAATGACTTTAGGTCAATAATATGAACCTGATATATTAGAT
GAGCAACTGATAAAAGTGCCGGGTAATATGTTTAGGTGATGCAGAGAG
Found at i:21380895 original size:18 final size:17
Alignment explanation
Indices: 21380872--21380924 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
21380862 ATACATTATG
*
21380872 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
21380890 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
21380907 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
21380925 TTAATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 5 0.15
18 28 0.85
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:21381128 original size:39 final size:41
Alignment explanation
Indices: 21381074--21381179 Score: 99
Period size: 44 Copynumber: 2.5 Consensus size: 41
21381064 TTTCCTTATG
* * *
21381074 CTATTATACTTCTATTCCATTCAACCAAACACAAGAA-TA-
1 CTATTATGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
21381113 CTATTATGCCTCTATTCTATTCCATTCAACCAAACAAAAGAATTAC
1 CTATTATG-C-C---TCTATTCCATTCAACCAAACAAAAGAATTAC
* * *
21381159 CAATTACGCCTTTATTCCATT
1 CTATTATGCCTCTATTCCATT
21381180 ACAGCGAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
39 7 0.13
40 1 0.02
41 10 0.19
44 27 0.50
45 3 0.06
46 6 0.11
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (41 bp):
CTATTATGCCTCTATTCCATTCAACCAAACAAAAGAATTAC
Found at i:21382211 original size:25 final size:25
Alignment explanation
Indices: 21382142--21382212 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
21382132 AATTTTCTCG
* *
21382142 AAATTTTACCGATGGTAAAATCGTCA
1 AAATTTTATCGGT-GTAAAATCGTCA
* *
21382168 AAATTTTACTAGG-GGAAAATCGTCA
1 AAATTTTA-TCGGTGTAAAATCGTCA
21382193 AAATTTTATCGGTGTAAAAT
1 AAATTTTATCGGTGTAAAAT
21382213 TGTGATGAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
24 3 0.08
25 25 0.68
26 8 0.22
27 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.32
Consensus pattern (25 bp):
AAATTTTATCGGTGTAAAATCGTCA
Found at i:21382720 original size:30 final size:30
Alignment explanation
Indices: 21382684--21382743 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
21382674 AACTTTTTCT
21382684 AGTTCTGTGTTTTGATTCAATTGGTTCGAG
1 AGTTCTGTGTTTTGATTCAATTGGTTCGAG
*
21382714 AGTTCTGTGTTTTGGTTCAATTGGTTCGAG
1 AGTTCTGTGTTTTGATTCAATTGGTTCGAG
21382744 CTCACACTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.10, G:0.28, T:0.47
Consensus pattern (30 bp):
AGTTCTGTGTTTTGATTCAATTGGTTCGAG
Found at i:21384559 original size:20 final size:20
Alignment explanation
Indices: 21384531--21384568 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
21384521 CTCTCAACTT
21384531 TTGTCAATA-ATATCAAAACC
1 TTGTCAATATATA-CAAAACC
*
21384551 TTGTTAATATATACAAAA
1 TTGTCAATATATACAAAA
21384569 ATATTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.34
Consensus pattern (20 bp):
TTGTCAATATATACAAAACC
Found at i:21388296 original size:125 final size:124
Alignment explanation
Indices: 21388045--21388610 Score: 720
Period size: 124 Copynumber: 4.5 Consensus size: 124
21388035 GATAAAATCA
* * * * * * * *
21388045 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGGCCACGTGTACGCGCTTTTGCTACAAT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
21388110 AGGTCCTAGAAAAATAATTTCAACTTGACGTTTTTGAGCAAATAGTTTAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTTTAAAAACGCTTC
* *
21388169 AAGCAGGATGCTTTATGAGAAGAATTTGTGAATTCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * *
21388234 TGGTCCTGGAAGAAATAATTTCGAGTTGACATTTTTGAGCAAATAGTTTAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGACTTGACGTTTTTGAGCAAATAGTTTAAAAACGCTTC
* * * *
21388294 AAGCAGGATGATTTATAAGAAGAATTTGAGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * * * * *
21388359 GGGTCCTGAAAAAATAATTTTGAGTTGACGTTCTTGAACAAATAGCATAAAACAACGCTGC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAG-TTTAAA-AACGCTTC
* * *
21388420 AAGCAGCATGCTATT-TGAGAAGAGTTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * * * *
21388484 TAGGTCTTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAATCACTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTTTAAAAACGCTTC
* * * *
21388544 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACACGTTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
21388609 AG
66 AG
21388611 CATGTTTAGG
Statistics
Matches: 382, Mismatches: 55, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
123 2 0.01
124 157 0.41
125 121 0.32
126 100 0.26
127 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (124 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTTTGAGCAAATAGTTTAAAAACGCTTC
Found at i:21391818 original size:22 final size:22
Alignment explanation
Indices: 21391777--21392252 Score: 562
Period size: 22 Copynumber: 22.0 Consensus size: 22
21391767 TCAAATTATA
*
21391777 TTTAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
21391798 TTTAATTTAATGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21391820 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21391841 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21391862 TTTAGGTTAAGGGTTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
* *
21391884 TTTAATTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21391906 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21391928 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* ** *
21391950 TTAAAGTTAAAAG-TTAGTGTT
1 TTTAAGTTAAGGGTTTAGGGTT
21391971 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21391993 TTTAAGTTAAAGGG-TTAGGTTT
1 TTTAAGTT-AAGGGTTTAGGGTT
*
21392015 TTTAAGTTAAGGG-TTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21392036 TTTAAGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
21392058 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
21392079 TTTAGGTTAATAGTTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
21392101 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
21392123 TTTAATTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
21392145 TTAAAGTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
21392166 TTTAGGTTAATAGG-TTAGGGTT
1 TTTAAGTTAA-GGGTTTAGGGTT
*
21392188 TTTAAATTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
21392210 TTTAGGTTAAGGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
21392232 TTTAATTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
21392253 AGGGTTTTTA
Statistics
Matches: 398, Mismatches: 45, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
21 142 0.36
22 246 0.62
23 10 0.03
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:21391837 original size:43 final size:43
Alignment explanation
Indices: 21391777--21392252 Score: 516
Period size: 43 Copynumber: 11.0 Consensus size: 43
21391767 TCAAATTATA
* * * *
21391777 TTTAAGTTAATGGTTAGGGTTTTTAATTTAATGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* *
21391820 TTAAAGTTAAGGGTTAGGGTTTTTAAGTTAA-GGGTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* *
21391862 TTTAGGTTAAGGGTTTATGGG-TTTTAATTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGGGTTAGGGTT
* * *
21391906 TTTAATTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* ** * *
21391950 TTAAAGTTAAAAGTTAGTGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* *
21391993 TTTAAGTTAAAGGGTTAGGTTTTTTAAGTTAA-GGGTTAGGATT
1 TTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
21392036 TTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAA-GGGTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* * * *
21392079 TTTAGGTTAATAGTTTATGGG-TTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAA-GGGTTA-GGGTTTTTAAGTTAAGGGGTTAGGGTT
* * * *
21392123 TTTAATTTAAAGGTTTAGGGTTTTAAAGTTAA-AGGTTAGGGTT
1 TTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* * * *
21392166 TTTAGGTTAATAGGTTAGGGTTTTTAAATTAAGGGTTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
* * *
21392210 TTTAGGTTAAGGGTTTAGGATTTTTAATTTAA-GGGTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
21392253 AGGGTTTTTA
Statistics
Matches: 370, Mismatches: 50, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
42 24 0.06
43 197 0.53
44 147 0.40
45 2 0.01
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGGTT
Found at i:21391916 original size:65 final size:63
Alignment explanation
Indices: 21391777--21392252 Score: 553
Period size: 65 Copynumber: 7.3 Consensus size: 63
21391767 TCAAATTATA
* * *
21391777 TTTAAGTTAATGGTTAGGGTTTTTAATTTAATGGTTTAGGGTTTTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTAGGGTT
* * *
21391841 TTTAAGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTATGGGTTTTAATTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTA-GGGTTTTAAGTTAA-GGGTTAGGGTT
* * ** *
21391906 TTTAATTTAAGGGTTTAGGGTTTTTAATTTAAGGGTTTAGGGTTTTAAAGTTAAAAGTTAGTGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTAGGGTT
* *
21391971 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAAGGG-TTAGGTTTTTTAAGTTAAGGGTTAGGAT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTT-AAGGGTTTAGG-GTTTTAAGTTAAGGGTTAGGGT
21392035 T
63 T
* * *
21392036 TTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAGGTTAATAGTTTATGGG
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAA-GGGTTA-GGG
21392100 -T
62 TT
* * *
21392101 TTTAAGTTAAGGGTTTAGGGTTTTTAATTTAAAGGTTTAGGGTTTTAAAGTTAAAGGTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTAGGGTT
* * * * *
21392166 TTTAGGTTAATAGGTTAGGGTTTTTAAATTAAGGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGAT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGG-TTAGGGT
21392231 T
63 T
*
21392232 TTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
21392253 AGGGTTTTTA
Statistics
Matches: 355, Mismatches: 40, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
64 65 0.18
65 215 0.61
66 75 0.21
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (63 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAGTTAAGGGTTAGGGTT
Found at i:21391939 original size:87 final size:85
Alignment explanation
Indices: 21391777--21392252 Score: 539
Period size: 87 Copynumber: 5.5 Consensus size: 85
21391767 TCAAATTATA
* * * *
21391777 TTTAAGTTAATGG-TTAGGGTTTTTAATTTAATGGTTTAGGGTTTTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
*
21391841 TTTAAGTTAAGGG-TTAAGGTT
64 TTTAAGTTAAGGGTTTAGGGTT
* * *
21391862 TTTAGGTTAAGGGTTTATGGGTTTTAATTTAAGGGGTTAGGGTTTTTAATTTAAGGGTTTAGGGT
1 TTTAAGTTAAGGGTTTA-GGGTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGT
*
21391927 TTTTAATTTAAGGGTTTAGGGTT
63 TTTTAAGTTAAGGGTTTAGGGTT
* ** * *
21391950 TTAAAGTTAAAAG-TTAGTGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAAGGGTTAGGTT
1 TTTAAGTTAAGGGTTTAG-GGTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTT-AAGGGTTAGGGT
*
21392014 TTTTAAGTTAAGGG-TTAGGATT
63 TTTTAAGTTAAGGGTTTAGGGTT
* * * *
21392036 TTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAATAGTTTATGGG-
1 TTTAAGTTAAGGGTTTAGGG-TTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA-GGGTTA-GGGT
21392100 TTTTAAGTTAAGGGTTTAGGGTT
63 TTTTAAGTTAAGGGTTTAGGGTT
* * * * *
21392123 TTTAATTTAAAGGTTTAGGGTTTTAAAGTTAAAGGTTAGGGTTTTTAGGTTAATAGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTTTT-AAGTTAAGGGTTAGGGTTTTTAAGTTAA-GGGTTAGGGTT
*
21392188 TTTAAATTAAGGGTTTAGGGTT
64 TTTAAGTTAAGGGTTTAGGGTT
* * *
21392210 TTTAGGTTAAGGGTTTAGGATTTTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGG-GTTTTAAGTTAAGGGTTAGGGTT
21392253 AGGGTTTTTA
Statistics
Matches: 337, Mismatches: 39, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
85 13 0.04
86 97 0.29
87 202 0.60
88 25 0.07
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (85 bp):
TTTAAGTTAAGGGTTTAGGGTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTT
TAAGTTAAGGGTTTAGGGTT
Found at i:21394705 original size:11 final size:11
Alignment explanation
Indices: 21394691--21394772 Score: 73
Period size: 11 Copynumber: 7.3 Consensus size: 11
21394681 ATAAATATGG
21394691 ATTTGAGAGAA
1 ATTTGAGAGAA
*
21394702 ATTTTGA-AGGA
1 A-TTTGAGAGAA
21394713 ATTTGAGAGCAA
1 ATTTGAGAG-AA
21394725 A-TTGAGAGGAA
1 ATTTGAGA-GAA
21394736 ATTT-AGAAGAA
1 ATTTGAG-AGAA
21394747 A-TTGAGAGAAA
1 ATTTGAGAG-AA
21394758 ATTTGAGAGAGA
1 ATTTGAGAGA-A
21394770 ATT
1 ATT
21394773 AGTTTATGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 19
0.74 0.03 0.24
Matches are distributed among these distances:
10 9 0.15
11 28 0.47
12 22 0.37
ACGTcount: A:0.45, C:0.01, G:0.27, T:0.27
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:21394730 original size:33 final size:33
Alignment explanation
Indices: 21394691--21394772 Score: 103
Period size: 33 Copynumber: 2.4 Consensus size: 33
21394681 ATAAATATGG
* * *
21394691 ATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGAAA
21394725 A-TTGAGAGGAAATTTAGAAGAAATTGAGAGAAA
1 ATTTGAGA-GAAATTTAGAAGAAATTGAGAGAAA
21394758 ATTTGAGAGAGAATT
1 ATTTGAGAGA-AATT
21394773 AGTTTATGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.45, C:0.01, G:0.27, T:0.27
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGAAA
Found at i:21403213 original size:3 final size:3
Alignment explanation
Indices: 21403205--21403236 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
21403195 GATTTAGTCC
21403205 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
21403237 CCTATTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:21403800 original size:16 final size:16
Alignment explanation
Indices: 21403781--21403811 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21403771 TACACCCATA
*
21403781 TATATGTACATATTTT
1 TATATATACATATTTT
21403797 TATATATACATATTT
1 TATATATACATATTT
21403812 ATCGTTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATATACATATTTT
Found at i:21416356 original size:43 final size:43
Alignment explanation
Indices: 21416088--21416481 Score: 220
Period size: 43 Copynumber: 9.3 Consensus size: 43
21416078 ATTATACAGG
* * ** *
21416088 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAGAATTTCAG-A
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGA--TTGAA-GTCAGAA
* * *
21416133 TCTTATCTCCCTGAGATTACA-CGGAGTAGATTGAAG-CTAGTAA
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGTC-AG-AA
* * * * *
21416176 TCCTATCTC-CTGAGATTACAGTGGAGCGGATT-AAATAAGGA
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGTCAGAA
* * * * *
21416217 TCTTATCTCTCTGA-AGTTACAG-AGAGTAGATCGCA-TCAG-G
1 TCTTATCTCTCTGAGA-TTACAGTGGAGCAGATTGAAGTCAGAA
* *
21416257 TCTTATC-C-CTGAG-TTACAGTGGAGTAGA-CGAAGAATTTCAG-A
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAG----TCAGAA
* * *
21416299 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAA
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGTCAGAA
21416342 TCTTATCTCTCTGAGATTACAG-GGAGCAGATTGAAGAT-AGTAA
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAG-TCAG-AA
* * *
21416385 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGAT-AGTAA
1 TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAG-TCAG-AA
* * * * *
21416429 TCCTATCTCT-TGA-AGTTGCAGT-GAGCGGATT-AAATAAG-A
1 TCTTATCTCTCTGAGA-TTACAGTGGAGCAGATTGAAGTCAGAA
21416468 TCTTATCTCTCTGA
1 TCTTATCTCTCTGA
21416482 ATTCAGCAGA
Statistics
Matches: 283, Mismatches: 40, Indels: 57
0.74 0.11 0.15
Matches are distributed among these distances:
37 9 0.03
38 11 0.04
39 11 0.04
40 12 0.04
41 25 0.09
42 67 0.24
43 70 0.25
44 39 0.14
45 35 0.12
46 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
TCTTATCTCTCTGAGATTACAGTGGAGCAGATTGAAGTCAGAA
Found at i:21418099 original size:3 final size:3
Alignment explanation
Indices: 21418093--21418134 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
21418083 TGTTGTTTAG
21418093 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
21418135 CCTTACTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:21418395 original size:15 final size:15
Alignment explanation
Indices: 21418372--21418403 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21418362 TGTTTATATA
*
21418372 TTATGTTATTTTATT
1 TTATCTTATTTTATT
21418387 TTATCTTATTTTATT
1 TTATCTTATTTTATT
21418402 TT
1 TT
21418404 CCACATATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (15 bp):
TTATCTTATTTTATT
Found at i:21432471 original size:6 final size:6
Alignment explanation
Indices: 21432458--21432503 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
21432448 TTCTTTTTGG
* * *
21432458 TTTT-T TTTTAT TTTTAT TTTTAT TTTTAT GTTTAT GTTTAC TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
21432504 GTTATCTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:21433746 original size:43 final size:43
Alignment explanation
Indices: 21433685--21433772 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
21433675 ATATTTTATC
21433685 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
1 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
21433728 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
1 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
21433771 CT
1 CT
21433773 GTAAAAATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (43 bp):
CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
Found at i:21440198 original size:206 final size:206
Alignment explanation
Indices: 21439844--21440235 Score: 543
Period size: 206 Copynumber: 1.9 Consensus size: 206
21439834 AACCCACGGT
* * *
21439844 CCCCAGATCTAGAATTGGGTCTAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAGACAATGCA
1 CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAGACAATGCA
* *
21439909 TCGTCCCTAGCCAAGCGATTTTGAGACCTAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCGT
66 TCGTCCCTAGCCAAGCGACTTTGAGACCCAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCGT
* * ** * *
21439974 ATCGAAATTTGGCATACTGCCCAAAGAGGAAGACTCAACTCGAGCCTCCTACGACGTTCACTTAT
131 ATCCAAACTCAGCATACTGCCCAAAGAGGAAGACTCAACTCAAGCCCCCTACGACGTTCACTTAT
21440039 CGACCCGTGGC
196 CGACCCGTGGC
* * * * *
21440050 CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTTAGTATGGCTT-GGAACAGTGC
1 CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAG-ACAATGC
* * * * * * * *
21440114 GTCGTCCCTAGTCGAGTGGCTTTGAGACCCAGTCTTAGTAGTAGGTGAAATTGGTGTCTCACTCG
65 ATCGTCCCTAGCCAAGCGACTTTGAGACCCAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCG
*
21440179 TATCCAAACTCAGCATACTGCCCAGAGAGGAAGACTCAACTCAAGCCCCCTACGACG
130 TATCCAAACTCAGCATACTGCCCAAAGAGGAAGACTCAACTCAAGCCCCCTACGACG
21440236 CCCATCGCGT
Statistics
Matches: 160, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
205 1 0.01
206 159 0.99
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (206 bp):
CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAGACAATGCA
TCGTCCCTAGCCAAGCGACTTTGAGACCCAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCGT
ATCCAAACTCAGCATACTGCCCAAAGAGGAAGACTCAACTCAAGCCCCCTACGACGTTCACTTAT
CGACCCGTGGC
Found at i:21446861 original size:22 final size:20
Alignment explanation
Indices: 21446817--21446861 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
21446807 ACAAGTTAGC
*
21446817 AAACAAATATAAATAGAAAT
1 AAACAAATATAAATAAAAAT
*
21446837 AAACAAATATTTATATAAAAAT
1 AAACAAATA--TAAATAAAAAT
21446859 AAA
1 AAA
21446862 TAAAATATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (20 bp):
AAACAAATATAAATAAAAAT
Found at i:21447328 original size:25 final size:25
Alignment explanation
Indices: 21447299--21447349 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
21447289 AAAGGAGCCT
* *
21447299 TTAAATCAATTTGAATAAAATCAAA
1 TTAAATCAATTGGAATAAAATAAAA
**
21447324 TTAAATTGATTGGAATAAAATAAAA
1 TTAAATCAATTGGAATAAAATAAAA
21447349 T
1 T
21447350 CAAGATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (25 bp):
TTAAATCAATTGGAATAAAATAAAA
Found at i:21455750 original size:13 final size:13
Alignment explanation
Indices: 21455732--21455757 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21455722 AATGTTAAGA
21455732 GTATAAGGAAGGC
1 GTATAAGGAAGGC
21455745 GTATAAGGAAGGC
1 GTATAAGGAAGGC
21455758 CTTAGCTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.38, T:0.15
Consensus pattern (13 bp):
GTATAAGGAAGGC
Found at i:21458762 original size:120 final size:120
Alignment explanation
Indices: 21458615--21458844 Score: 451
Period size: 120 Copynumber: 1.9 Consensus size: 120
21458605 TTTGAGTAAA
21458615 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
21458680 TAAATTATATATTTTAATTATAATATATCTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATCTAATAATAATTATGTTAATTTATATT
21458735 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
*
21458800 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATCTAATAATAATTATGTT
21458845 TAAATATGAT
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (120 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATCTAATAATAATTATGTTAATTTATATT
Found at i:21458810 original size:61 final size:61
Alignment explanation
Indices: 21458625--21458812 Score: 203
Period size: 60 Copynumber: 3.1 Consensus size: 61
21458615 TTATAGTATC
21458625 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * *
21458686 ATATATT-TTAATT-A-TAATATATC-TAATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTA
1 ATATATTATGATTTGAGTAA-AT-TCAT-ATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AA
*
21458743 TC
60 TT
21458745 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
21458806 ATATATT
1 ATATATT
21458813 TTAATTATAA
Statistics
Matches: 99, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
58 5 0.05
59 22 0.22
60 38 0.38
61 29 0.29
62 5 0.05
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:21458827 original size:16 final size:16
Alignment explanation
Indices: 21458806--21458847 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
21458796 TTATTAAATT
*
21458806 ATATATTTTAATTATA
1 ATATATTTTAATAATA
21458822 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
21458837 AT-TATGTTTAA
1 ATATAT-TTTAA
21458848 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:21458832 original size:15 final size:15
Alignment explanation
Indices: 21458797--21458838 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
21458787 TTAAGAATTT
*
21458797 TATTAAATTAT-ATA
1 TATTTAATTATAATA
21458811 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
21458825 TATTTAATAATAAT
1 TATTTAATTATAAT
21458839 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:21459020 original size:39 final size:42
Alignment explanation
Indices: 21458975--21459075 Score: 100
Period size: 44 Copynumber: 2.4 Consensus size: 42
21458965 TTCCATTATG
21458975 CTATTACACCTCTATTC-T-ATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCATAATTCAACCAAACACAAGATTTA
* * *** *
21459014 CTATTACGCCTCCATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-CA-TA-ATTCAACCAAACACAAGATTTA
21459059 CTATTACACCTCTATTC
1 CTATTACACCTCTATTC
21459076 CAATACACCT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
39 14 0.29
40 1 0.02
42 1 0.02
44 16 0.33
45 16 0.33
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.34
Consensus pattern (42 bp):
CTATTACACCTCTATTCATAATTCAACCAAACACAAGATTTA
Found at i:21459077 original size:45 final size:43
Alignment explanation
Indices: 21458973--21459082 Score: 111
Period size: 45 Copynumber: 2.6 Consensus size: 43
21458963 TTTTCCATTA
21458973 TGCTATTACACCTCTATT-C-T--ATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * * ***
21459012 TACTATTACGCCTCCATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
21459057 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
21459083 CCTCTAATCC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
39 15 0.27
40 1 0.02
42 1 0.02
44 15 0.27
45 22 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:21459084 original size:16 final size:16
Alignment explanation
Indices: 21459063--21459114 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
21459053 GATTTGCTAT
*
21459063 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
21459079 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
21459095 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
21459111 TACA
1 TACA
21459115 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:21461137 original size:43 final size:42
Alignment explanation
Indices: 21461083--21461313 Score: 185
Period size: 43 Copynumber: 5.4 Consensus size: 42
21461073 ATTTTTGGAA
* * *
21461083 ACAAACGCCGCTAAAGACCGGGACCCTTAGCGGCATTTTTTCC
1 ACAAACGCCGCTAAAGACC-AGACCCTTAGCGGCACTTTTCCC
* * * *
21461126 ACAAATGCCGCTAAAGAGCAAGACCTTTAGCGGCGCTTTTCCC
1 ACAAACGCCGCTAAAGA-CCAGACCCTTAGCGGCACTTTTCCC
* * * * *
21461169 AAAAATGCCGCTAAAGAGCTAGACCTTTAGTGGCACTTTTCCC
1 ACAAACGCCGCTAAAGA-CCAGACCCTTAGCGGCACTTTTCCC
* * * * *
21461212 ACAAACGCCGCTAAAAAGCCGGA-CCTTTGACGGCGCTTTTACC
1 ACAAACGCCGCTAAAGA-CCAGACCCTTAG-CGGCACTTTTCCC
* * * * * *
21461255 ACAAACGCCGCTAAAGAGCAGGATCTTTAGCGGCGCTTTTACG
1 ACAAACGCCGCTAAAGACCA-GACCCTTAGCGGCACTTTTCCC
*
21461298 ACAAACACCGCTAAAG
1 ACAAACGCCGCTAAAG
21461314 GTCATGAAAA
Statistics
Matches: 156, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
42 5 0.03
43 146 0.94
44 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (42 bp):
ACAAACGCCGCTAAAGACCAGACCCTTAGCGGCACTTTTCCC
Found at i:21461214 original size:86 final size:85
Alignment explanation
Indices: 21461085--21461313 Score: 253
Period size: 86 Copynumber: 2.7 Consensus size: 85
21461075 TTTTGGAAAC
* * * * * *
21461085 AAACGCCGCTAAAGACCGGGACCCTTAGCGGCATTTTTTCCACAAATGCCGCTAAAGAGCAAGAC
1 AAACGCCGCTAAAGAGC-AGACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAGAGCAAGAC
*
21461150 CTTT-AGCGGCGCTTTTCCCAA
65 CTTTGA-CGGCGCTTTTACCAA
* * * * **
21461171 AAATGCCGCTAAAGAGCTAGACCTTTAGTGGCACTTTTCCCACAAACGCCGCTAAAAAGCCGGAC
1 AAACGCCGCTAAAGAGC-AGACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAGAGCAAGAC
*
21461236 CTTTGACGGCGCTTTTACCAC
65 CTTTGACGGCGCTTTTACCAA
* * * *
21461257 AAACGCCGCTAAAGAGCAGGATCTTTAGCGGCGCTTTTACGACAAACACCGCTAAAG
1 AAACGCCGCTAAAGAGCA-GACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAG
21461314 GTCATGAAAA
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
85 1 0.01
86 117 0.98
87 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (85 bp):
AAACGCCGCTAAAGAGCAGACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAGAGCAAGACC
TTTGACGGCGCTTTTACCAA
Found at i:21465297 original size:7 final size:7
Alignment explanation
Indices: 21465285--21465369 Score: 55
Period size: 7 Copynumber: 11.4 Consensus size: 7
21465275 CTAACTCTTG
21465285 AAACCCT
1 AAACCCT
*
21465292 AAACCCC
1 AAACCCT
21465299 AAATCCCT
1 AAA-CCCT
*
21465307 AACCCCT
1 AAACCCT
21465314 AAATCCCCT
1 AAA--CCCT
*
21465323 AACCCCT
1 AAACCCT
21465330 AAATCCCTT
1 AAA-CCC-T
*
21465339 AACCCCT
1 AAACCCT
*
21465346 AAACCTT
1 AAACCCT
*
21465353 AAATCAC-
1 AAA-CCCT
21465360 AAACCCT
1 AAACCCT
21465367 AAA
1 AAA
21465370 TCGATACCCC
Statistics
Matches: 59, Mismatches: 12, Indels: 14
0.69 0.14 0.16
Matches are distributed among these distances:
6 2 0.03
7 36 0.61
8 12 0.20
9 9 0.15
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:21465324 original size:16 final size:16
Alignment explanation
Indices: 21465288--21465348 Score: 90
Period size: 16 Copynumber: 3.9 Consensus size: 16
21465278 ACTCTTGAAA
21465288 CCCTAAACCCC-AAAT-
1 CCCT-AACCCCTAAATC
21465303 CCCTAACCCCTAAATC
1 CCCTAACCCCTAAATC
21465319 CCCTAACCCCTAAATC
1 CCCTAACCCCTAAATC
*
21465335 CCTTAACCCCTAAA
1 CCCTAACCCCTAAA
21465349 CCTTAAATCA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
14 6 0.14
15 8 0.19
16 29 0.67
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.18
Consensus pattern (16 bp):
CCCTAACCCCTAAATC
Found at i:21465345 original size:8 final size:8
Alignment explanation
Indices: 21465288--21465350 Score: 69
Period size: 8 Copynumber: 8.1 Consensus size: 8
21465278 ACTCTTGAAA
21465288 CCCTAAAC
1 CCCTAAAC
*
21465296 CCC-AAAT
1 CCCTAAAC
21465303 CCCT-AAC
1 CCCTAAAC
21465310 CCCTAAATC
1 CCCTAAA-C
21465319 CCCT-AAC
1 CCCTAAAC
*
21465326 CCCTAAAT
1 CCCTAAAC
*
21465334 CCCTTAAC
1 CCCTAAAC
21465342 CCCTAAAC
1 CCCTAAAC
21465350 C
1 C
21465351 TTAAATCACA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
7 17 0.38
8 23 0.51
9 5 0.11
ACGTcount: A:0.33, C:0.49, G:0.00, T:0.17
Consensus pattern (8 bp):
CCCTAAAC
Found at i:21465786 original size:113 final size:114
Alignment explanation
Indices: 21465583--21466034 Score: 616
Period size: 113 Copynumber: 4.0 Consensus size: 114
21465573 TAAATTATTT
* * * *
21465583 TAAATCCCTGAGCATTAGCGGCGCTTTCTT-AAAACACCGTTAAATCCCCGAAGGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* * * *
21465647 GGCGCCGTTAGGCTTAGTTTTTTTTGCGGTGCTTTCCCAAAAATGTCGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
*
21465696 TAAAGCCCTGAGCATTAGCGGCGCTTT-TTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* *
21465760 GGTGCCGTTGGGCTTAGTTTTTTTTGCGGTGCTTTCCCAAAAACGCCGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
* * * *
21465809 TAAAGCCCTGAGTATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGATAGCTCAAAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
*
21465874 GGCACCGTTGGGC----TTTTTTTTGCGGCG-TTTCCCCAAAAACGCC-C
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTT-CCCAAAAACGCCGC
* * * *
21465918 TAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAATGACGCTAAATCCCCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* * * *
21465983 GGAGTCGTTGGGCTTAG-GTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
21466031 TAAA
1 TAAA
21466035 TCCCCGAAAG
Statistics
Matches: 301, Mismatches: 29, Indels: 18
0.86 0.08 0.05
Matches are distributed among these distances:
109 72 0.24
110 25 0.08
112 25 0.08
113 135 0.45
114 44 0.15
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (114 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
Found at i:21466034 original size:222 final size:223
Alignment explanation
Indices: 21465583--21466034 Score: 617
Period size: 223 Copynumber: 2.0 Consensus size: 223
21465573 TAAATTATTT
* * *
21465583 TAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAACACCGTTAAATCCCCGAAGGCTCAGAAAACG
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAACACCGCTAAATCCCCGAAGGCTCAAAAAACG
* * * * *
21465648 GCGCCGTTAGGCTTAGTTTTTTTTGCGGTGCTTTCCCAAAAATGTCGCTAAAGCCCTGAGCATTA
66 GCACCGTTAGGC-T--TTTTTTTTGCGGCGCTTTCCCAAAAACGTCCCTAAAGCCCTGAGAATTA
* * * *
21465713 GCGGCGCTTTTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGTGCCGTTGGGCTTAGT
128 GCGGCGCTTTTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGCCGTTGGGCTTAGT
* *
21465778 TTTTTTTGCGGTGCTTTCCCAAAAACGCCGC
193 GTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
* * *
21465809 TAAAGCCCTGAGTATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGATA-GCTCAAAAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTT-AAAACACCGCTAAATCCCCGA-AGGCTCAAAAAA
*
21465873 CGGCACCGTTGGGC-TTTTTTTTGCGGCG-TTTCCCCAAAAACG-CCCTAAAGCCCTGAGAATTA
64 CGGCACCGTTAGGCTTTTTTTTTGCGGCGCTTT-CCCAAAAACGTCCCTAAAGCCCTGAGAATTA
* *
21465935 GCGGCGCTTTCTAAAAAATGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
128 GCGGCGCTTT-TAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGCCGTTGGGCTTAG
*
21466000 -GTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
192 TGTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
21466031 TAAA
1 TAAA
21466035 TCCCCGAAAG
Statistics
Matches: 201, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
222 63 0.31
223 70 0.35
226 28 0.14
227 39 0.19
228 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (223 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAACACCGCTAAATCCCCGAAGGCTCAAAAAACG
GCACCGTTAGGCTTTTTTTTTGCGGCGCTTTCCCAAAAACGTCCCTAAAGCCCTGAGAATTAGCG
GCGCTTTTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGCCGTTGGGCTTAGTGTT
TTTTGCGGCGCTTTCCCAAAAACGCCGC
Found at i:21466052 original size:72 final size:72
Alignment explanation
Indices: 21465935--21466078 Score: 243
Period size: 72 Copynumber: 2.0 Consensus size: 72
21465925 CTGAGAATTA
*
21465935 GCGGCGCTTTCTAAAAAATGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
1 GCGGCGCTTTCTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
21466000 GTTTTTT
66 GTTTTTT
* * * *
21466007 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
21466072 GTTTTTT
66 GTTTTTT
21466079 TGCGACGTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (72 bp):
GCGGCGCTTTCTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
GTTTTTT
Found at i:21466135 original size:186 final size:182
Alignment explanation
Indices: 21465826--21466225 Score: 613
Period size: 186 Copynumber: 2.2 Consensus size: 182
21465816 CTGAGTATTA
* *
21465826 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGATAGCTCAAAAAACGGCACCGTTGGGCTTTT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCACCGTTGGGCTTTT
* * *
21465891 TTTTGCGGCGTTTCCCCAAAAACGCCCTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAATGA
66 TTTTGCGACGTATCCCCAAAAACGCCCTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAACGA
21465956 CGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGG-TTTTTT
131 CGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGGTTTTTTT
* * *** *
21466007 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCACCGTTGGGC-T--
*
21466072 GTTTTTTTGCGACGTATCCCCAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAAA
63 -TTTTTTTGCGACGTATCCCCAAAAACGCC-CTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAA
* * *
21466137 AACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTTTTTTT
126 AACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGGTTTTTTT
21466194 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
21466226 TGAGCATTAG
Statistics
Matches: 197, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
181 53 0.27
182 1 0.01
185 27 0.14
186 79 0.40
187 37 0.19
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (182 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCACCGTTGGGCTTTT
TTTTGCGACGTATCCCCAAAAACGCCCTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAACGA
CGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGGTTTTTTT
Found at i:21466211 original size:114 final size:114
Alignment explanation
Indices: 21466007--21466447 Score: 645
Period size: 114 Copynumber: 3.9 Consensus size: 114
21465997 TAGGTTTTTT
* *
21466007 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
* * ** *
21466072 GTTTTTTTGCGACG-TATCCCCAAAAACGCCACTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCT-TTCTTAAAAACGCCACTAAATCCCTGAGCATTA
*
21466121 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
*
21466186 GTTTTTTTGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCTTAAAAACGCCACTAAATCCCTGAGCATTA
* * *
21466235 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGTCGTCGTTTGCCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
* *
21466300 GTTTTTTTGCGGCGCTTTATTAATAACGCCACTAAATCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCTTAAAAACGCCACTAAATCCCTGAGCATTA
* * * * *
21466349 GTGGCGCTTTCTTAAAAACCCCGCTAAATCTCCGAAAGCTCA-ATAAATGGCGTCGTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGA-AAACGGCGTCGTTTGGCTTA
** *
21466413 GG-TTTTTTGCGGCGCTTTCTGGAAAACGCCGCTAA
65 GGTTTTTTTGCGGCGCTTTCTTAAAAACGCCACTAA
21466448 TTCTTATTTT
Statistics
Matches: 298, Mismatches: 27, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
113 29 0.10
114 268 0.90
115 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (114 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
GTTTTTTTGCGGCGCTTTCTTAAAAACGCCACTAAATCCCTGAGCATTA
Done.