Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 72 of 228
Found at i:21470312 original size:10 final size:9
Alignment explanation
Indices: 21470260--21470311 Score: 65
Period size: 8 Copynumber: 6.0 Consensus size: 9
21470250 AAGACAGTTG
21470260 GAGAGAGAA
1 GAGAGAGAA
21470269 GAGAG-GAA
1 GAGAGAGAA
*
21470277 GAGAGAGCAT
1 GAGAGAG-AA
21470287 GAGAGA-AA
1 GAGAGAGAA
21470295 GAGAGA-AA
1 GAGAGAGAA
21470303 GAGAGAGAA
1 GAGAGAGAA
21470312 AATTATTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 23 0.61
9 8 0.21
10 7 0.18
ACGTcount: A:0.54, C:0.02, G:0.42, T:0.02
Consensus pattern (9 bp):
GAGAGAGAA
Found at i:21471849 original size:104 final size:104
Alignment explanation
Indices: 21471664--21471892 Score: 363
Period size: 104 Copynumber: 2.2 Consensus size: 104
21471654 AGGACCACAC
* * * * *
21471664 GGGCATGTGTCTAGGACGTGTAACTCATTATTTACATTTTAGAACCACACGGTCGGAGGACATGG
1 GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTACATTTTAGAACCACAAGGTCAGAGGACATGG
*
21471729 GCATTGTCCAGGCCGTGTGAGTTACACG-GACAAGGACAT
66 GCATTGTCCAGGCCGTGTGAGTCACACGAG-CAAGGACAT
21471768 GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTAC-TTTTGAGAACCACAAGGTCAGAGGACATG
1 GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTACATTTT-AGAACCACAAGGTCAGAGGACATG
21471832 GGCATTGTCCAGGCCGTGTGAGTCACACGAGCAAGGACAT
65 GGCATTGTCCAGGCCGTGTGAGTCACACGAGCAAGGACAT
*
21471872 GGGCGTGTGTCCAGGCTGTGT
1 GGGCGTGTGTCCAGGCCGTGT
21471893 GAGCCACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
103 4 0.03
104 111 0.96
105 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (104 bp):
GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTACATTTTAGAACCACAAGGTCAGAGGACATGG
GCATTGTCCAGGCCGTGTGAGTCACACGAGCAAGGACAT
Found at i:21471893 original size:42 final size:42
Alignment explanation
Indices: 21471824--21471930 Score: 162
Period size: 42 Copynumber: 2.6 Consensus size: 42
21471814 ACAAGGTCAG
* * *
21471824 AGGACATGGGCAT-TGTCCAGGCCGTGTGAGTCACACGAGCA
1 AGGACATGGGCGTGTGTCCAGGCCGTGTGAGCCACACAAGCA
*
21471865 AGGACATGGGCGTGTGTCCAGGCTGTGTGAGCCACACAAGCA
1 AGGACATGGGCGTGTGTCCAGGCCGTGTGAGCCACACAAGCA
*
21471907 AGGACATGGGCGTGTGTCTAGGCC
1 AGGACATGGGCGTGTGTCCAGGCC
21471931 TTATGGCTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 12 0.20
42 47 0.80
ACGTcount: A:0.22, C:0.23, G:0.36, T:0.18
Consensus pattern (42 bp):
AGGACATGGGCGTGTGTCCAGGCCGTGTGAGCCACACAAGCA
Found at i:21473610 original size:20 final size:22
Alignment explanation
Indices: 21473570--21473611 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
21473560 ACTATTAATA
*
21473570 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
21473592 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
21473612 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:21473659 original size:16 final size:17
Alignment explanation
Indices: 21473623--21473659 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
21473613 AATTTTATTT
*
21473623 TAATAATAAATTTTAAA
1 TAATAATAAACTTTAAA
21473640 -AATAAT-AACTTTAAA
1 TAATAATAAACTTTAAA
21473655 TAATA
1 TAATA
21473660 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAACTTTAAA
Found at i:21474223 original size:14 final size:14
Alignment explanation
Indices: 21474204--21474242 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
21474194 ACAGAAAAAT
21474204 AAATCATTTTCCAA
1 AAATCATTTTCCAA
* *
21474218 AAATCATTTTTCGA
1 AAATCATTTTCCAA
*
21474232 AAGTCATTTTC
1 AAATCATTTTC
21474243 AATGAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:21476834 original size:317 final size:317
Alignment explanation
Indices: 21476259--21476896 Score: 1276
Period size: 317 Copynumber: 2.0 Consensus size: 317
21476249 ATTATGCCTT
21476259 GTTTTTATTTTATGTTGTGATCATTTTTTGCAATGTATGTTGTTTTGTTTTGTGGGTATTTGAAC
1 GTTTTTATTTTATGTTGTGATCATTTTTTGCAATGTATGTTGTTTTGTTTTGTGGGTATTTGAAC
21476324 ATTGATTTCATCCTTGAATTTAAATTGCGATTTTTTCATCAACAATATTCTTCTTTATCTTGTTC
66 ATTGATTTCATCCTTGAATTTAAATTGCGATTTTTTCATCAACAATATTCTTCTTTATCTTGTTC
21476389 AACAAAGTCGATTAAAAATTGACTTGCAAATAATTACCACACAATTCCTGTGAAGATGATAACTT
131 AACAAAGTCGATTAAAAATTGACTTGCAAATAATTACCACACAATTCCTGTGAAGATGATAACTT
21476454 TTTTACTTACTACTTATTACTTGTACGACCGTATACACTTTCATGTAATCACACGACGATACAAG
196 TTTTACTTACTACTTATTACTTGTACGACCGTATACACTTTCATGTAATCACACGACGATACAAG
21476519 TTTTGGTGTCGTTGTCGGGGACTGTATTTTATTATTTGTGAAGATATTTATTTTTCA
261 TTTTGGTGTCGTTGTCGGGGACTGTATTTTATTATTTGTGAAGATATTTATTTTTCA
21476576 GTTTTTATTTTATGTTGTGATCATTTTTTGCAATGTATGTTGTTTTGTTTTGTGGGTATTTGAAC
1 GTTTTTATTTTATGTTGTGATCATTTTTTGCAATGTATGTTGTTTTGTTTTGTGGGTATTTGAAC
21476641 ATTGATTTCATCCTTGAATTTAAATTGCGATTTTTTCATCAACAATATTCTTCTTTATCTTGTTC
66 ATTGATTTCATCCTTGAATTTAAATTGCGATTTTTTCATCAACAATATTCTTCTTTATCTTGTTC
21476706 AACAAAGTCGATTAAAAATTGACTTGCAAATAATTACCACACAATTCCTGTGAAGATGATAACTT
131 AACAAAGTCGATTAAAAATTGACTTGCAAATAATTACCACACAATTCCTGTGAAGATGATAACTT
21476771 TTTTACTTACTACTTATTACTTGTACGACCGTATACACTTTCATGTAATCACACGACGATACAAG
196 TTTTACTTACTACTTATTACTTGTACGACCGTATACACTTTCATGTAATCACACGACGATACAAG
21476836 TTTTGGTGTCGTTGTCGGGGACTGTATTTTATTATTTGTGAAGATATTTATTTTTCA
261 TTTTGGTGTCGTTGTCGGGGACTGTATTTTATTATTTGTGAAGATATTTATTTTTCA
21476893 GTTT
1 GTTT
21476897 GGTTTAGTTT
Statistics
Matches: 321, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
317 321 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (317 bp):
GTTTTTATTTTATGTTGTGATCATTTTTTGCAATGTATGTTGTTTTGTTTTGTGGGTATTTGAAC
ATTGATTTCATCCTTGAATTTAAATTGCGATTTTTTCATCAACAATATTCTTCTTTATCTTGTTC
AACAAAGTCGATTAAAAATTGACTTGCAAATAATTACCACACAATTCCTGTGAAGATGATAACTT
TTTTACTTACTACTTATTACTTGTACGACCGTATACACTTTCATGTAATCACACGACGATACAAG
TTTTGGTGTCGTTGTCGGGGACTGTATTTTATTATTTGTGAAGATATTTATTTTTCA
Found at i:21483605 original size:30 final size:30
Alignment explanation
Indices: 21483570--21483636 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
21483560 TTCATATTCG
* *
21483570 ATGGTCAAAAATATCCATTTTCATTAATCA
1 ATGGTCAAAAACAACCATTTTCATTAATCA
* * * *
21483600 ATGGTCAAAACCAACCCTTTTGATTAATCG
1 ATGGTCAAAAACAACCATTTTCATTAATCA
21483630 ATGGTCA
1 ATGGTCA
21483637 TCACCATCGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (30 bp):
ATGGTCAAAAACAACCATTTTCATTAATCA
Found at i:21483671 original size:29 final size:28
Alignment explanation
Indices: 21483629--21483770 Score: 108
Period size: 29 Copynumber: 4.9 Consensus size: 28
21483619 TTGATTAATC
* *
21483629 GATGGTCATCACCATCGCTTTTCATAGTT
1 GATGGTCGTAACCATC-CTTTTCATAGTT
* * *
21483658 GATGGTCGTTACCATCCCTTTTCATAATC
1 GATGGTCGTAACCAT-CCTTTTCATAGTT
* * *
21483687 AATAGTCG-AAGCTATCCGTTTTCATA-TT
1 GATGGTCGTAA-CCATCC-TTTTCATAGTT
21483715 CGATGGTCGTAACCATCCTTGTTCATAGTT
1 -GATGGTCGTAACCATCCTT-TTCATAGTT
* * *
21483745 GATTGTAGTCACCATCCCTTTTCATA
1 GATGGTCGTAACCAT-CCTTTTCATA
21483771 ATCGATAGCC
Statistics
Matches: 90, Mismatches: 15, Indels: 16
0.74 0.12 0.13
Matches are distributed among these distances:
28 6 0.07
29 75 0.83
30 9 0.10
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (28 bp):
GATGGTCGTAACCATCCTTTTCATAGTT
Found at i:21483741 original size:87 final size:87
Alignment explanation
Indices: 21483624--21483805 Score: 267
Period size: 87 Copynumber: 2.1 Consensus size: 87
21483614 CCCTTTTGAT
* * *
21483624 TAATCGATGGTCATCACCATCGCTTTTCATAGTTGATGGTCGTTACCATCCCTTTTCATAATCAA
1 TAATCGATGGTCATAACCATCGCTTTTCATAGTTGATGGTAGTCACCATCCCTTTTCATAATCAA
*
21483689 TAGTCGAAGCTATCCGTTTTCA
66 TAGCCGAAGCTATCCGTTTTCA
* * * *
21483711 TATTCGATGGTCGTAACCATC-CTTGTTCATAGTTGATTGTAGTCACCATCCCTTTTCATAATCG
1 TAATCGATGGTCATAACCATCGCTT-TTCATAGTTGATGGTAGTCACCATCCCTTTTCATAATCA
*
21483775 ATAGCCGAAGCTATCCTTTTTCA
65 ATAGCCGAAGCTATCCGTTTTCA
21483798 TAATCGAT
1 TAATCGAT
21483806 ATCTGAAGCT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 3 0.04
87 81 0.96
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (87 bp):
TAATCGATGGTCATAACCATCGCTTTTCATAGTTGATGGTAGTCACCATCCCTTTTCATAATCAA
TAGCCGAAGCTATCCGTTTTCA
Found at i:21483790 original size:29 final size:29
Alignment explanation
Indices: 21483671--21483886 Score: 141
Period size: 29 Copynumber: 7.4 Consensus size: 29
21483661 GGTCGTTACC
* *
21483671 ATCCCTTTTCATAATCAATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * *
21483700 ATCCGTTTTCATATTCGATGGTCGTAA-CC
1 ATCCCTTTTCATAATCGATAGCCG-AAGCT
* * * ** * *
21483729 AT-CCTTGTTCATAGTTGATTGTAGTCA-CC
1 ATCCCTT-TTCATAATCGATAGCCG-AAGCT
21483758 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
21483787 ATCCTTTTTCATAATCGATATCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * *
21483816 ATCCCTTTTCATAATTGATAGACAAAGAT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
21483845 ATCTCTTTTCATTAATCGATAGCCAAAGGT
1 ATCCCTTTTCA-TAATCGATAGCCGAAGCT
* *
21483875 GTCCCATTTCAT
1 ATCCCTTTTCAT
21483887 TGGTCGATGA
Statistics
Matches: 147, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
28 4 0.03
29 114 0.78
30 29 0.20
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:21493718 original size:21 final size:21
Alignment explanation
Indices: 21493689--21493735 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
21493679 TACATTAGGT
*
21493689 TTAACATATATAATATAA-TAA
1 TTAAAATAT-TAATATAATTAA
**
21493710 TTAAAATATTTTTATAATTAA
1 TTAAAATATTAATATAATTAA
21493731 TTAAA
1 TTAAA
21493736 CTTTTATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAAAATATTAATATAATTAA
Found at i:21498688 original size:36 final size:36
Alignment explanation
Indices: 21498637--21498709 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
21498627 CTTTTCTATT
*
21498637 TGCATCAAAATGCAACCAAGACCACTATGTGAAGCA
1 TGCATCAAAACGCAACCAAGACCACTATGTGAAGCA
*
21498673 TGCATCAAAACGCAACCAAGACCATTATGTGAAGCA
1 TGCATCAAAACGCAACCAAGACCACTATGTGAAGCA
21498709 T
1 T
21498710 CACTATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (36 bp):
TGCATCAAAACGCAACCAAGACCACTATGTGAAGCA
Found at i:21499357 original size:31 final size:31
Alignment explanation
Indices: 21499319--21499381 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
21499309 TTATTTCACC
21499319 TTCAATTGGTAATAACTAGATCTCAGATCAA
1 TTCAATTGGTAATAACTAGATCTCAGATCAA
21499350 TTCAATTGGTAATAACTAGATCTCAGATCAA
1 TTCAATTGGTAATAACTAGATCTCAGATCAA
21499381 T
1 T
21499382 CTTAGATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (31 bp):
TTCAATTGGTAATAACTAGATCTCAGATCAA
Found at i:21499898 original size:14 final size:15
Alignment explanation
Indices: 21499872--21499900 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
21499862 GACCAACTGG
21499872 TTTCATGCTTTTCAC
1 TTTCATGCTTTTCAC
21499887 TTTCAT-CTTTTCAC
1 TTTCATGCTTTTCAC
21499901 CATTTGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.28, G:0.03, T:0.55
Consensus pattern (15 bp):
TTTCATGCTTTTCAC
Found at i:21506325 original size:27 final size:28
Alignment explanation
Indices: 21506280--21506335 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
21506270 TTTATTTAAA
* * * *
21506280 AAAAATTTAGTTTCTATTTTTTAGATTT
1 AAAAATTTAATTTCAATTTATTAAATTT
21506308 AAAAATTTAATTT-AATTTATTAAATTT
1 AAAAATTTAATTTCAATTTATTAAATTT
21506335 A
1 A
21506336 TTGATGTGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (28 bp):
AAAAATTTAATTTCAATTTATTAAATTT
Found at i:21507013 original size:27 final size:27
Alignment explanation
Indices: 21506975--21507042 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 27
21506965 AGGTATGTTT
*
21506975 GTTAGTATTTTTTTTTAATTTA-AAGGG
1 GTTAGTATTTTTTTTTAA-ATAGAAGGG
21507002 GTTAGTA-TTTTTTTTAAATAGAAGGG
1 GTTAGTATTTTTTTTTAAATAGAAGGG
*
21507028 ATTAGTTATTTTTTT
1 GTTAG-TATTTTTTT
21507043 ATGTTGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 2 0.06
26 19 0.53
27 9 0.25
28 6 0.17
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (27 bp):
GTTAGTATTTTTTTTTAAATAGAAGGG
Found at i:21507275 original size:102 final size:104
Alignment explanation
Indices: 21507064--21507435 Score: 355
Period size: 102 Copynumber: 3.5 Consensus size: 104
21507054 TTAGTAATTA
*
21507064 TTATAAATTGTTTGTGTTTAGTTTAGTGTT-TTGTGATTTTTTATGAATGTAAATTTTTTTGTTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAAA------TATTT
* *
21507128 TTCTAAATGATTTTAAAGTTATTTTGTTTGTAATTTATAATTAGG
60 TTCTAAATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
* *
21507173 TTATATATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATTAATGTAAA-ATTTTT-T-
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTATTGTGATTTTTTATGAATGTAAATATTTTTCTA
* *
21507235 AATTATTTGAAAGTTATTTTGTTAGTAATTTATTATTAGG
65 AATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
* * * *
21507275 TTATAAATTTTTTGTGTATAGTTTAGTGCTTATTGTGATTTTTTATGAATGTAATTTTTTTTGTG
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTATTGTGATTTTTTATGAATGTAA------ATAT-
* * ** * *
21507340 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGG
58 TTTTCTAAATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
* * * * *
21507387 TTATAAATT-ATT-TGTTTAGTTTAATGTAATT-TTATTTGTTAT-AATGTAA
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAA
21507436 TTTTATTTGT
Statistics
Matches: 227, Mismatches: 24, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
102 85 0.37
103 1 0.00
104 5 0.02
107 7 0.03
108 9 0.04
109 32 0.14
110 18 0.08
111 25 0.11
112 45 0.20
ACGTcount: A:0.26, C:0.01, G:0.15, T:0.59
Consensus pattern (104 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAAATATTTTTCTAA
ATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
Found at i:21507433 original size:20 final size:20
Alignment explanation
Indices: 21507408--21507446 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
21507398 TTGTTTAGTT
21507408 TAATGTAATTTTATTTGTTA
1 TAATGTAATTTTATTTGTTA
21507428 TAATGTAATTTTATTTGTT
1 TAATGTAATTTTATTTGTT
21507447 TTTTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (20 bp):
TAATGTAATTTTATTTGTTA
Found at i:21507468 original size:112 final size:112
Alignment explanation
Indices: 21507229--21507450 Score: 305
Period size: 112 Copynumber: 2.0 Consensus size: 112
21507219 TAATGTAAAA
** * * *
21507229 TTTTTT-AATTATTTGAAAGTTATTTTGTTAGTAATTTATTATTAGGTTATAAATTTTTTGTGTA
1 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGTGTA
* * * *
21507293 TAGTTTAGTGCTTATTGTGATTTTTTATGAATGTAATTTTTTTTGTG
66 TAGTTTAATGCTAATTGTGATTTGTTATGAATGTAATTTTATTTGTG
21507340 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGT-T-
1 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGTGTA
*
21507403 TAGTTTAATG-TAATT-TTATTTGTTAT-AATGTAATTTTATTTGT-
66 TAGTTTAATGCTAATTGTGATTTGTTATGAATGTAATTTTATTTGTG
21507446 TTTTT
1 TTTTT
21507451 ATTTATTTGA
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
106 5 0.05
107 16 0.16
108 9 0.09
109 4 0.04
110 9 0.09
111 7 0.07
112 50 0.50
ACGTcount: A:0.26, C:0.01, G:0.13, T:0.60
Consensus pattern (112 bp):
TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGTGTA
TAGTTTAATGCTAATTGTGATTTGTTATGAATGTAATTTTATTTGTG
Found at i:21510569 original size:27 final size:27
Alignment explanation
Indices: 21510525--21510576 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
21510515 CAAAACTGCT
*
21510525 TCACTGGTGCCACTTATCAGATAGGGG
1 TCACTGGTGCCACCTATCAGATAGGGG
* *
21510552 TCACTGGTGCCGCCTATCAGGTAGG
1 TCACTGGTGCCACCTATCAGATAGG
21510577 CACCACCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (27 bp):
TCACTGGTGCCACCTATCAGATAGGGG
Found at i:21511923 original size:29 final size:31
Alignment explanation
Indices: 21511890--21511947 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
21511880 TTATTTAGGA
21511890 TTAAAATA-ATAT-AATT-TTTTGTTATAACT
1 TTAAAATACATATAAATTATTTT-TTATAACT
21511919 TTAAAATACATATAAATTATTTTTTATAA
1 TTAAAATACATATAAATTATTTTTTATAA
21511948 TATGTATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 8 0.31
30 4 0.15
31 10 0.38
32 4 0.15
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (31 bp):
TTAAAATACATATAAATTATTTTTTATAACT
Found at i:21513457 original size:18 final size:18
Alignment explanation
Indices: 21513431--21513465 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21513421 AAACTATTTT
21513431 CTTAAAATTAGAATTATG
1 CTTAAAATTAGAATTATG
* *
21513449 CTTATAATTATAATTAT
1 CTTAAAATTAGAATTAT
21513466 TATATTTAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (18 bp):
CTTAAAATTAGAATTATG
Found at i:21515313 original size:21 final size:20
Alignment explanation
Indices: 21515263--21515313 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
21515253 CATTCCTCCC
* *
21515263 TAATTCTTATGATATTTTTT
1 TAATTATTATGATATTTTCT
*
21515283 TAA-AATTTATGATATTTTCCT
1 TAATTA-TTATGATATTTT-CT
21515304 TAATTATTAT
1 TAATTATTAT
21515314 TAATTTATGT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 15 0.62
21 8 0.33
22 1 0.04
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (20 bp):
TAATTATTATGATATTTTCT
Found at i:21524839 original size:3 final size:3
Alignment explanation
Indices: 21524833--21524893 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
21524823 AACCTACTAC
* * * *
21524833 TAA TAA TAA GAGA -AA TAA AAA TAA TAA AAA TAG TAA -AA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
21524877 TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
21524894 GAAATGTTAG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
2 3 0.06
3 44 0.92
4 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:21524959 original size:13 final size:13
Alignment explanation
Indices: 21524943--21524978 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
21524933 TAAAATAAGT
*
21524943 AAATAAGTAAATA
1 AAATAAATAAATA
21524956 AAATAAATAAATA
1 AAATAAATAAATA
*
21524969 AAATTAATAA
1 AAATAAATAA
21524979 GGGAGGAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (13 bp):
AAATAAATAAATA
Found at i:21531515 original size:69 final size:69
Alignment explanation
Indices: 21531372--21531847 Score: 692
Period size: 69 Copynumber: 6.9 Consensus size: 69
21531362 CACAGTTTTA
* * * * *
21531372 AAATCAGCCCTATACAACAACACATTAAGAACTTAAATCGAA--TAAATGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
*
21531435 ATAC
66 CTAC
* *
21531439 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAATGTAAATTAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
21531504 CTAC
66 CTAC
* * *
21531508 AAATCAGCCCTTTACAGCAGCACATTAAGCACTTAAATCGACCGTAAACGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
21531573 CTAC
66 CTAC
* * * * *
21531577 AAATCAGCCCTTTACAGTAGCACATTAAGCATTTAAATCGAATGTAGATTAACATATTTTAAATG
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAA-G
21531642 -CTAC
65 ACTAC
* *
21531646 -AATCAGCCCTTTACAGCAGCACCTTAAGCATTTTAAA-CGAATGTAAATGAACACATTTTAAAG
1 AAATCAGCCCTTTACAGCAGCACATTAAGCA-TTTAAATCGAACGTAAATGAACACATTTTAAAG
21531709 ACTAC
65 ACTAC
* * * *
21531714 ATACCAGCCCTTTACAACAGCACATTAAGCATTTAAATCGAACGTAAATCAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
21531779 CTAC
66 CTAC
*
21531783 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATAGAACGTAAATGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
21531848 TGCTGAATCT
Statistics
Matches: 366, Mismatches: 36, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
67 38 0.10
68 60 0.16
69 267 0.73
70 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.26
Consensus pattern (69 bp):
AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
CTAC
Found at i:21531677 original size:206 final size:206
Alignment explanation
Indices: 21531372--21531847 Score: 710
Period size: 206 Copynumber: 2.3 Consensus size: 206
21531362 CACAGTTTTA
* * * * *
21531372 AAATCAGCCCTATACAACAACACATTAAGAACTTAAATCGAA-TAAATGAACACATTTTAAAGAA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAAGTAAATGAACACATTTTAAAGAA
*
21531436 TACAAATCAGCCCTTTACAGCAGCACATTAAGCA-TTTAAATCGAATGTAAATTAACACATTTTA
66 TACAAATCAGCCCTTTACAGCAGCACATTAAGCATTTTAAA-CGAATGTAAATGAACACATTTTA
* * *
21531500 AAGACTACAAATCAGCCCTTTACAGCAGCACATTAAGCACTTAAATCGACCGTAAA-CGAACACA
130 AAGACTACAAACCAGCCCTTTACAACAGCACATTAAGCACTTAAATCGAACGTAAATC-AACACA
21531564 TTTTAAAGACTAC
194 TTTTAAAGACTAC
* * * *
21531577 AAATCAGCCCTTTACAGTAGCACATTAAGCATTTAAATCGAATGTAGATTAACATATTTTAAATG
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAA-GTAAATGAACACATTTTAAA-G
* *
21531642 -CTAC-AATCAGCCCTTTACAGCAGCACCTTAAGCATTTTAAACGAATGTAAATGAACACATTTT
64 AATACAAATCAGCCCTTTACAGCAGCACATTAAGCATTTTAAACGAATGTAAATGAACACATTTT
* *
21531705 AAAGACTACATACCAGCCCTTTACAACAGCACATTAAGCATTTAAATCGAACGTAAATCAACACA
129 AAAGACTACAAACCAGCCCTTTACAACAGCACATTAAGCACTTAAATCGAACGTAAATCAACACA
21531770 TTTTAAAGACTAC
194 TTTTAAAGACTAC
*
21531783 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATAGAACGTAAATGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAA-GTAAATGAACACATTTTAAAGA
21531848 TGCTGAATCT
Statistics
Matches: 242, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
205 37 0.15
206 178 0.74
207 26 0.11
208 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.26
Consensus pattern (206 bp):
AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAAGTAAATGAACACATTTTAAAGAA
TACAAATCAGCCCTTTACAGCAGCACATTAAGCATTTTAAACGAATGTAAATGAACACATTTTAA
AGACTACAAACCAGCCCTTTACAACAGCACATTAAGCACTTAAATCGAACGTAAATCAACACATT
TTAAAGACTAC
Found at i:21532426 original size:18 final size:19
Alignment explanation
Indices: 21532403--21532439 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
21532393 TTTACTGAAC
21532403 ATGTAACT-ATCCATTCAT
1 ATGTAACTAATCCATTCAT
21532421 ATGTAACTAATCCATTCAT
1 ATGTAACTAATCCATTCAT
21532440 GTGCAACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (19 bp):
ATGTAACTAATCCATTCAT
Found at i:21538629 original size:46 final size:44
Alignment explanation
Indices: 21538542--21538636 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 44
21538532 CGAAATGAAT
*
21538542 AAAAACGGAGAAATAAGAAACATTTAGGAATGATTATGGTTTTCTC
1 AAAAACGGAGAAATAAGAAACATTTAGAAATGATTATGG-TTTC-C
* * *
21538588 AAAAATGGAGAAAT-TGAATCATTTAGAAATGAATT-TAGGTTTCC
1 AAAAACGGAGAAATAAGAAACATTTAGAAATG-ATTAT-GGTTTCC
21538632 AAAAA
1 AAAAA
21538637 ATAGAAATGG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
44 6 0.14
45 19 0.44
46 18 0.42
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.28
Consensus pattern (44 bp):
AAAAACGGAGAAATAAGAAACATTTAGAAATGATTATGGTTTCC
Found at i:21541646 original size:24 final size:24
Alignment explanation
Indices: 21541619--21541667 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
21541609 ATTAGTTTTT
21541619 ATAACAATGATCGGAAATAAATTC
1 ATAACAATGATCGGAAATAAATTC
21541643 ATAACAATGATCGGAAATAAATTC
1 ATAACAATGATCGGAAATAAATTC
21541667 A
1 A
21541668 CTGGCAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.24
Consensus pattern (24 bp):
ATAACAATGATCGGAAATAAATTC
Found at i:21543443 original size:68 final size:68
Alignment explanation
Indices: 21543313--21543443 Score: 181
Period size: 68 Copynumber: 1.9 Consensus size: 68
21543303 GGAAAGAAGT
* * * * *
21543313 TGTAACCCCTCAAACTGTGCCTAGACATTACAACCCAATTTAAGCGATTACATAGGCTATAGACT
1 TGTAACCCCTCAAACCGGGCCTAGACATTACAACCCAATCTAAGCGATTACAGAGGCCATAGACT
21543378 AAA
66 AAA
* * * *
21543381 TGTAACCCTTCAAACCGGGCCTAGACATTACATCCCAATCTAAGTGATTACAGGGGCCATAGA
1 TGTAACCCCTCAAACCGGGCCTAGACATTACAACCCAATCTAAGCGATTACAGAGGCCATAGA
21543444 AATGGTGAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (68 bp):
TGTAACCCCTCAAACCGGGCCTAGACATTACAACCCAATCTAAGCGATTACAGAGGCCATAGACT
AAA
Found at i:21550155 original size:94 final size:94
Alignment explanation
Indices: 21549991--21550191 Score: 278
Period size: 94 Copynumber: 2.1 Consensus size: 94
21549981 GGTTATGTGG
* * * * *
21549991 CTGGACACACGGTCATGTCCCAGGTCGTGTGCACAAGGGAGTGTTCTACAATGAGTTATACGGTG
1 CTGGACACACGGGCATATCCCAAGTCATGTGCACAAGGGAGTGTTCTACAATGAGTTACACGGTG
21550056 TGAAGACATAGCTGTGTAAGTCACACGAC
66 TGAAGACATAGCTGTGTAAGTCACACGAC
* * * * *
21550085 C-GAGACACACGGGCGTATCCCAAGTCATGTGCACAAGGTAGTGTTCTATAGTGAGTTACATGGT
1 CTG-GACACACGGGCATATCCCAAGTCATGTGCACAAGGGAGTGTTCTACAATGAGTTACACGGT
* *
21550149 GTGAAGACATGGCTGTGTAGGTCACACGAC
65 GTGAAGACATAGCTGTGTAAGTCACACGAC
21550179 CTGGACACACGGG
1 CTGGACACACGGG
21550192 TGTGTCCTTG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
93 1 0.01
94 91 0.98
95 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (94 bp):
CTGGACACACGGGCATATCCCAAGTCATGTGCACAAGGGAGTGTTCTACAATGAGTTACACGGTG
TGAAGACATAGCTGTGTAAGTCACACGAC
Found at i:21550759 original size:19 final size:19
Alignment explanation
Indices: 21550730--21550776 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 19
21550720 ATTCACCCCA
21550730 TCCCTTTCCTTTTTCCCTCT
1 TCCCTTTCCTTTTTCCCT-T
21550750 TCCC-TTCCTTTTTCCCTT
1 TCCCTTTCCTTTTTCCCTT
21550768 TCCCGTTTC
1 TCCC-TTTC
21550777 TATCGTCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.20
19 13 0.52
20 7 0.28
ACGTcount: A:0.00, C:0.45, G:0.02, T:0.53
Consensus pattern (19 bp):
TCCCTTTCCTTTTTCCCTT
Found at i:21551137 original size:9 final size:9
Alignment explanation
Indices: 21551116--21551185 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
21551106 CTATTTCAAT
21551116 TTTTTATTA
1 TTTTTATTA
21551125 TTTTT-TTA
1 TTTTTATTA
*
21551133 CTTTTATTA
1 TTTTTATTA
*
21551142 TATTTTCTTA
1 T-TTTTATTA
* *
21551152 GTATTATTA
1 TTTTTATTA
21551161 TTTTTCCTATTA
1 -TTTT--TATTA
21551173 TTTTTATT-
1 TTTTTATTA
21551181 TTTTT
1 TTTTT
21551186 TGCACTAGCT
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
8 12 0.25
9 18 0.38
10 9 0.19
11 4 0.08
12 5 0.10
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.74
Consensus pattern (9 bp):
TTTTTATTA
Found at i:21551137 original size:17 final size:18
Alignment explanation
Indices: 21551117--21551166 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 18
21551107 TATTTCAATT
21551117 TTTTATTATTTTT-TTAC
1 TTTTATTATTTTTCTTAC
*
21551134 TTTTATTATATTTTCTTAG
1 TTTTATTAT-TTTTCTTAC
*
21551153 TATTATTATTTTTC
1 TTTTATTATTTTTC
21551167 CTATTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 9 0.31
18 9 0.31
19 11 0.38
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTATTATTTTTCTTAC
Found at i:21551158 original size:19 final size:18
Alignment explanation
Indices: 21551119--21551183 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
21551109 TTTCAATTTT
*
21551119 TTATTATTTTT-TTACTT
1 TTATTATTTTTCTTACTA
*
21551136 TTATTATATTTTCTTAGTA
1 TTATTAT-TTTTCTTACTA
* *
21551155 TTATTATTTTTCCTATTA
1 TTATTATTTTTCTTACTA
*
21551173 TTTTTATTTTT
1 TTATTATTTTT
21551184 TTTGCACTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
17 7 0.17
18 23 0.56
19 11 0.27
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (18 bp):
TTATTATTTTTCTTACTA
Found at i:21558836 original size:23 final size:22
Alignment explanation
Indices: 21558810--21558853 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
21558800 TTTATGAATT
21558810 TATTATTAGTTTTTAATATTATG
1 TATTATTA-TTTTTAATATTATG
*
21558833 TATTATTATTTTTTATATTAT
1 TATTATTATTTTTAATATTAT
21558854 TTTTAAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (22 bp):
TATTATTATTTTTAATATTATG
Found at i:21559358 original size:6 final size:6
Alignment explanation
Indices: 21559347--21559371 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
21559337 AGGGTTTTTC
21559347 TTCTTT TTCTTT TTCTTT TTCTTT T
1 TTCTTT TTCTTT TTCTTT TTCTTT T
21559372 CTAATAGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTCTTT
Found at i:21564979 original size:45 final size:45
Alignment explanation
Indices: 21564906--21565055 Score: 201
Period size: 45 Copynumber: 3.3 Consensus size: 45
21564896 TACTACGTGT
* * * *
21564906 ACCGAGTATCATTGATTGTAACGATGGTTGTTATGTGTTGATTCC
1 ACCGAGTACCATTGATTATAAAGGTGGTTGTTATGTGTTGATTCC
* * *
21564951 ACCGGGTACCATTGATTATAAAGGTGGTTGTTATGTGCTAATTCC
1 ACCGAGTACCATTGATTATAAAGGTGGTTGTTATGTGTTGATTCC
* * *
21564996 ACCGGGCACCATTGATTATAAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAGTACCATTGATTATAAAGGTGGTTGTTATGTGTTGATTCC
*
21565041 ACCGAGTATCATTGA
1 ACCGAGTACCATTGA
21565056 CTCTAAGGGT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (45 bp):
ACCGAGTACCATTGATTATAAAGGTGGTTGTTATGTGTTGATTCC
Found at i:21565067 original size:45 final size:45
Alignment explanation
Indices: 21564906--21565093 Score: 200
Period size: 45 Copynumber: 4.2 Consensus size: 45
21564896 TACTACGTGT
* * * * *
21564906 ACCGAGTATCATTGATTGTAACGATGGTTGTTATGTGTTGATTCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * *
21564951 ACCGGGTACCATTGATTATAAAGGTGGTTGTTATGTGCTAATTCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * *
21564996 ACCGGGCACCATTGATTATAAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * * *
21565041 ACCGAGTATCATTGACTCTAAGGGTGG-TGCTGTGTGCTGA-TCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
*
21565084 ACCGTGTATC
1 ACCGAGTATC
21565094 TGTTATTATT
Statistics
Matches: 123, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
43 12 0.10
44 11 0.09
45 100 0.81
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.35
Consensus pattern (45 bp):
ACCGAGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
Found at i:21570528 original size:43 final size:43
Alignment explanation
Indices: 21570481--21570697 Score: 274
Period size: 43 Copynumber: 5.0 Consensus size: 43
21570471 TTTTAGAAAT
** *
21570481 AAACGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
** * ** *
21570524 AAACGTTGCTAAAGACCAGGACCTTTAGCGGC-AATTTCTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTC-CCAC
*
21570567 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * **
21570610 AAACGCCGCTAAATACCATGACCTTTAGCAGCGCTTTTGTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
21570653 AAACGCCGCTATAGACCATGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
21570696 AA
1 AA
21570698 GATATTTAGC
Statistics
Matches: 145, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
42 4 0.03
43 137 0.94
44 4 0.03
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:21570633 original size:86 final size:86
Alignment explanation
Indices: 21570481--21570697 Score: 310
Period size: 86 Copynumber: 2.5 Consensus size: 86
21570471 TTTTAGAAAT
* ** * **
21570481 AAACGCCGCTAAAGGTCATGACTTTTAGCGGCGCTTTTCCCACAAACGTTGCTAAAGACCAGGAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGAC
*
21570546 CTTTAGCGGCAATTTCT-TCAC
66 CTTTAGCAGCAATTT-TGTCAC
* *
21570567 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAATACCATGAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGAC
**
21570632 CTTTAGCAGCGCTTTTGTCAC
66 CTTTAGCAGCAATTTTGTCAC
*
21570653 AAACGCCGCTATAGACCATGACCTTTAGCGACGCTTTTCCCACAA
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAA
21570698 GATATTTAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
85 1 0.01
86 117 0.99
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (86 bp):
AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGAC
CTTTAGCAGCAATTTTGTCAC
Found at i:21570773 original size:43 final size:44
Alignment explanation
Indices: 21570719--21570834 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 44
21570709 ACGTTTTTCC
* ** * ** *
21570719 CAAAAACGCCGCTAAAGGTCATGACCTTTAGCGG-TGTTTTTGT
1 CAAAAATGCCGCTAAAGAACATGACCTTTAACGGCACTTTTTAT
*
21570762 CACAAATGCCGCTAAAGAACATGACCTTTAACGGCACTTTTTAT
1 CAAAAATGCCGCTAAAGAACATGACCTTTAACGGCACTTTTTAT
* *
21570806 CAAAAATGCCGCTATAGAACA-AACCTTTA
1 CAAAAATGCCGCTAAAGAACATGACCTTTA
21570835 GCGACGCTTC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 36 0.59
44 25 0.41
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (44 bp):
CAAAAATGCCGCTAAAGAACATGACCTTTAACGGCACTTTTTAT
Found at i:21570787 original size:112 final size:112
Alignment explanation
Indices: 21570590--21570791 Score: 296
Period size: 112 Copynumber: 1.8 Consensus size: 112
21570580 GACCATGACC
* * *
21570590 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAATACCATGACCTTTAGCAGCGCTTTTGTCACAA
1 TTTAGCGACGCTTTTCCCAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTTTGTCACAA
* *
21570655 ACGCCGCTATAGACCATGACCTTTAGCGACGCTTTTCCCACAAGATA
66 ACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCCCACAAGATA
* ** * * *
21570702 TTTAGCGACGTTTTTCCCAAAAACGCCGCTAAAGGTCATGACCTTTAGCGGTGTTTTTGTCACAA
1 TTTAGCGACGCTTTTCCCAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTTTGTCACAA
*
21570767 ATGCCGCTAAAGAACATGACCTTTA
66 ACGCCGCTAAAGAACATGACCTTTA
21570792 ACGGCACTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 78 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (112 bp):
TTTAGCGACGCTTTTCCCAAAAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTTTGTCACAA
ACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCCCACAAGATA
Found at i:21572240 original size:16 final size:16
Alignment explanation
Indices: 21572216--21572250 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
21572206 TTTCCACTGA
*
21572216 CAAATTATAACAAAGG
1 CAAAATATAACAAAGG
21572232 CAAAATATAACAAAGG
1 CAAAATATAACAAAGG
21572248 CAA
1 CAA
21572251 TACCTTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.60, C:0.14, G:0.11, T:0.14
Consensus pattern (16 bp):
CAAAATATAACAAAGG
Found at i:21574013 original size:19 final size:19
Alignment explanation
Indices: 21573989--21574027 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
21573979 AGTGAGAAGA
21573989 TAAACTTCAGTCTGATTCT
1 TAAACTTCAGTCTGATTCT
21574008 TAAACTTCAGTCTGATTCT
1 TAAACTTCAGTCTGATTCT
21574027 T
1 T
21574028 CAGTATCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.44
Consensus pattern (19 bp):
TAAACTTCAGTCTGATTCT
Found at i:21575742 original size:20 final size:20
Alignment explanation
Indices: 21575717--21575779 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
21575707 AAAATAAAAG
*
21575717 TTTAAAATCTTTTTAAAATT
1 TTTAAAATCATTTTAAAATT
* **
21575737 TTTAAAA-AAAATTAAAATCT
1 TTTAAAATCATTTTAAAAT-T
21575757 TTTAAAATTCATTTTAAAATT
1 TTTAAAA-TCATTTTAAAATT
21575778 TT
1 TT
21575780 AAATCACGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
19 7 0.21
20 15 0.45
21 3 0.09
22 8 0.24
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTAAAATCATTTTAAAATT
Found at i:21575761 original size:10 final size:10
Alignment explanation
Indices: 21575717--21575776 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
21575707 AAAATAAAAG
21575717 TTTAAAATCTT
1 TTTAAAATC-T
21575728 TTTAAAAT-T
1 TTTAAAATCT
***
21575737 TTTAAAAAAA
1 TTTAAAATCT
*
21575747 ATTAAAATCT
1 TTTAAAATCT
21575757 TTTAAAATTCAT
1 TTTAAAA-TC-T
21575769 TTTAAAAT
1 TTTAAAAT
21575777 TTTAAATCAC
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
9 8 0.21
10 12 0.31
11 11 0.28
12 8 0.21
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:21575782 original size:30 final size:30
Alignment explanation
Indices: 21575710--21575782 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
21575700 TATTATAAAA
*
21575710 ATAAAAGTTTAAAATCTTTTTAAAATTTTT
1 ATAAAAATTTAAAATCTTTTTAAAATTTTT
* *
21575740 AAAAAAAATTAAAATC-TTTTAAAATTCATTT
1 ATAAAAATTTAAAATCTTTTTAAAATT--TTT
*
21575771 -TAAAATTTTAAA
1 ATAAAAATTTAAA
21575783 TCACGAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 10 0.29
30 22 0.63
31 3 0.09
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (30 bp):
ATAAAAATTTAAAATCTTTTTAAAATTTTT
Found at i:21577144 original size:41 final size:41
Alignment explanation
Indices: 21577082--21577360 Score: 364
Period size: 41 Copynumber: 6.8 Consensus size: 41
21577072 AGATTTTATT
*
21577082 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTATGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
* *
21577123 ATTAGTGGCGCTTCTTT-AAAAACGTCGCTAAAGGTACGAGC
1 ATTAGCGGCGCTT-TTTCAAAAACGCCGCTAAAGGTACGAGC
21577164 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
* ** * *
21577205 ATTCGCGGTACCTTTTCAAAAACGCCGCTAAAGGTACAAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
* * ** *
21577246 ATTAGCGGCTCTTATTCAAAAACAACGCTAAAGGTACGAGT
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
* **
21577287 ATTAGCGGCACTTTTTCAAAAACGCCGCTAAA-GCCCGGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTAC-GAGC
* *
21577328 ATTAGCGGTGCTTTTTCAAAAACGCCACTAAAG
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAG
21577361 ACCCCAAAAA
Statistics
Matches: 205, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
40 5 0.02
41 197 0.96
42 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
Found at i:21577548 original size:41 final size:41
Alignment explanation
Indices: 21577424--21577550 Score: 124
Period size: 40 Copynumber: 3.2 Consensus size: 41
21577414 TTGGAAAATG
*
21577424 CCGCTAATGCTT-ATTTTTAGCGGCG---TTGTCCAAAATGCA
1 CCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCC-AAA-GCA
* * *
21577463 CCGCTAATGCTCGATATTTA-TCGGCGTTTTTGT-AAAAGCA
1 CCGCTAATGCTTGATTTTTAGT-GGCGTTTTTGTCCAAAGCA
*
21577503 CCGCTAATGCTTGATTTTTAGTGGCGTTTTTTGTCCAAA-CG
1 CCGCTAATGCTTGATTTTTAGTGGCG-TTTTTGTCCAAAGCA
21577544 CCGCTAA
1 CCGCTAA
21577551 AAGTGCCGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
39 11 0.15
40 35 0.49
41 19 0.26
42 3 0.04
43 4 0.06
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (41 bp):
CCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCCAAAGCA
Found at i:21581868 original size:272 final size:272
Alignment explanation
Indices: 21581352--21581903 Score: 847
Period size: 272 Copynumber: 2.0 Consensus size: 272
21581342 AGCAGAGTAA
** *
21581352 CAATATTTTAAAGTTGTGTAAATAGCCCTGCTGGTGCCATCTATTTATTGGGAGAGAATGTAGAA
1 CAATATTTTAAAGTTGTGTAAATAGCCCTGCTGGTGCCATCTATTTATAAGAAGAGAATGTAGAA
* * *
21581417 CCCTTATTTAATTATAGAAGTTTATTTTAACTAGAAAAACGAAATCTTAGTTCAACTAGGATGTA
66 CCCTTATTTAATTATAGAAGTTCATTTTAACTAGAAAAACAAAACCTTAGTTCAACTAGGATGTA
* * *
21581482 GGGGGTGACAACCTTAGTTAATGATACTATGATTTGTTGTCCCACCTTATAAGATAAAGGGCTTT
131 GGGGGCGACAACCTTAGTTAATGATACTATGACTTGTTGTCCCACCTTATAACATAAAGGGCTTT
* * * *
21581547 TAGGCTTCTTCCCTATTGGGTCTAATTATAAGTACTTCTCGGGCTTTTAATCCAATACTTTATAA
196 TAGGCTTCTTCCCTATCGGGTATAATTACAAGTACTTCTCGGACTTTTAATCCAATACTTTATAA
21581612 TTTGATTCAACC
261 TTTGATTCAACC
* * **
21581624 CAATATTTTAAAGTTGTGTAAATAGCCTTTCTGGTGTTATCTATTTATAAGAAGAGAATGTAGAA
1 CAATATTTTAAAGTTGTGTAAATAGCCCTGCTGGTGCCATCTATTTATAAGAAGAGAATGTAGAA
* *
21581689 CCCTTATTTATTTATAGAAGTTCATTTTAACTAGAAAAACAAAACCTTAGTTCAACTCGGATGTA
66 CCCTTATTTAATTATAGAAGTTCATTTTAACTAGAAAAACAAAACCTTAGTTCAACTAGGATGTA
* *
21581754 GGGGGCGACAACCTTAGTTAATGATATTATGACTTGTTGTCTCACCTTATAACATAATA-GGCTT
131 GGGGGCGACAACCTTAGTTAATGATACTATGACTTGTTGTCCCACCTTATAACATAA-AGGGCTT
* *
21581818 TTAGGCTTCTTTCCTATCGGGTATAATTACAAGTGCTTCTTC-GACTTTTAATCCAATACTTTAT
195 TTAGGCTTCTTCCCTATCGGGTATAATTACAAGTACTTC-TCGGACTTTTAATCCAATACTTTAT
**
21581882 AATTTGATTCAATT
259 AATTTGATTCAACC
21581896 CAATATTT
1 CAATATTT
21581904 GTTTTTCTAT
Statistics
Matches: 253, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
272 250 0.99
273 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (272 bp):
CAATATTTTAAAGTTGTGTAAATAGCCCTGCTGGTGCCATCTATTTATAAGAAGAGAATGTAGAA
CCCTTATTTAATTATAGAAGTTCATTTTAACTAGAAAAACAAAACCTTAGTTCAACTAGGATGTA
GGGGGCGACAACCTTAGTTAATGATACTATGACTTGTTGTCCCACCTTATAACATAAAGGGCTTT
TAGGCTTCTTCCCTATCGGGTATAATTACAAGTACTTCTCGGACTTTTAATCCAATACTTTATAA
TTTGATTCAACC
Found at i:21582133 original size:6 final size:6
Alignment explanation
Indices: 21582122--21582162 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
21582112 AATTTTCAAG
21582122 TCATTT TCATTT TACAATTT TCATTT TCATTT TCATTT TCA
1 TCATTT TCATTT T-C-ATTT TCATTT TCATTT TCATTT TCA
21582163 GTTTAGAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 26 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61
Consensus pattern (6 bp):
TCATTT
Found at i:21582147 original size:20 final size:18
Alignment explanation
Indices: 21582122--21582162 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 18
21582112 AATTTTCAAG
21582122 TCATTTTCATTTTACAATTT
1 TCATTTTCATTTT-C-ATTT
21582142 TCATTTTCATTTTCATTT
1 TCATTTTCATTTTCATTT
21582160 TCA
1 TCA
21582163 GTTTAGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 13 0.62
ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61
Consensus pattern (18 bp):
TCATTTTCATTTTCATTT
Found at i:21582277 original size:16 final size:15
Alignment explanation
Indices: 21582252--21582286 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
21582242 TTCCAAAATG
*
21582252 TTTCCTATTTCTCCA
1 TTTCCTATTTCACCA
21582267 TTTCTCTATTTCACCA
1 TTTC-CTATTTCACCA
21582283 TTTC
1 TTTC
21582287 ACAATTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.54
Consensus pattern (15 bp):
TTTCCTATTTCACCA
Found at i:21584515 original size:51 final size:52
Alignment explanation
Indices: 21584438--21584566 Score: 181
Period size: 52 Copynumber: 2.5 Consensus size: 52
21584428 CGGATACCCG
*
21584438 GTGG-CTTGCACATAGTACCACCCTTGTAGCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTT-CACATAGTACCACACTTGTAGCCAAAGCTATCCTTCTTCACAAA
** * *
21584489 GTGGCCTTCACATAGTACCACACTTGTTTCCACAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATCCTTCTTCACAAA
*
21584541 GTGGCATTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
21584567 AGTCACTAGT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
51 30 0.43
52 40 0.57
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTAGCCAAAGCTATCCTTCTTCACAAA
Found at i:21585978 original size:25 final size:25
Alignment explanation
Indices: 21585943--21585993 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
21585933 TGAGGGCTAG
*
21585943 GGTTTCTTTTAGTTCATTT-TTTTTA
1 GGTTTCATTTA-TTCATTTATTTTTA
*
21585968 GGTTTCATTTATTTATTTATTTTTA
1 GGTTTCATTTATTCATTTATTTTTA
21585993 G
1 G
21585994 TTCTGTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.16, C:0.06, G:0.12, T:0.67
Consensus pattern (25 bp):
GGTTTCATTTATTCATTTATTTTTA
Found at i:21589952 original size:44 final size:43
Alignment explanation
Indices: 21589904--21590175 Score: 126
Period size: 44 Copynumber: 6.2 Consensus size: 43
21589894 AATTTCAAAG
* *
21589904 AGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGC
1 AGATAAGATCCTATA-TTCAATCCACTCCACTGTAATCTCAGGC
* * * * *
21589948 AGATAGGATTACTATATTCAATCTACTCCGCTGTAATCTCAGGG
1 AGATAAGA-TCCTATATTCAATCCACTCCACTGTAATCTCAGGC
* * *** *
21589992 AGATAAGAT-CTGAAATTC-TTCGGTTTGTTCCACTGTAATCTCAGGG
1 AGATAAGATCCT-ATATTCAATC----CACTCCACTGTAATCTCAGGC
* ** * * * *
21590038 AAATAAGA-CCT-GGTGCGATCTACTCTACTGTAA-CTTCAGAG-
1 AGATAAGATCCTATATTCAATCCACTCCACTGTAATC-TCAG-GC
*
21590079 AGATAAGATCCTTTATTCTAATCCACTCCACTGTAATCTCAGAG-
1 AGATAAGATCCTATATTC-AATCCACTCCACTGTAATCTCAG-GC
* * ** ** * *
21590123 AGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGG
1 AGATAAGA-TCCTATATTCAATCCACTCCACTGTAATCTCAGGC
21590167 AGATAAGAT
1 AGATAAGAT
21590176 TTGAAATTCT
Statistics
Matches: 175, Mismatches: 37, Indels: 33
0.71 0.15 0.13
Matches are distributed among these distances:
40 1 0.01
41 21 0.12
42 8 0.05
43 10 0.06
44 94 0.54
45 14 0.08
46 27 0.15
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (43 bp):
AGATAAGATCCTATATTCAATCCACTCCACTGTAATCTCAGGC
Found at i:21590082 original size:87 final size:87
Alignment explanation
Indices: 21589968--21590363 Score: 288
Period size: 88 Copynumber: 4.5 Consensus size: 87
21589958 ACTATATTCA
* * *
21589968 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTTTGTTCCACTGTAATCT
1 ATCTACTCCACTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
21590033 CAGGGAAATAAGACCTGGTGCG
66 CAGGGAAATAAGACCTGGTGCG
* ** ** ***
21590055 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATTC-T-AATCCACTCCACTGTAAT
1 ATCTACTCCACTGTAATC-TCAGAGAGATAAGAT-CTGAAATTCTTCGGTCTGTTCCACTGTAAT
* * * * * * *
21590116 CTCAGAGAGATAGGATTACTAGCTTCA
64 CTCAGGGAAATAAGA--CCT-GGTGCG
* * * *
21590143 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCGGTCTGTTCCACTGTAATCT
1 ATCTACTCCACTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
*
21590208 CAGGGGAATAAGACCTGGTGCG
66 CAGGGAAATAAGACCTGGTGCG
* * ** * *
21590230 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTG--GTT-TT-AATCCGCTCCACTGTAA
1 ATCTACTCCACTGTAATC-TCAGAGAGATAAGAT-C-TGAAATTCTTCGGTCTGTTCCACTGTAA
* * * * * *
21590290 TCTCAGGGAGATAGGATTACCAGCTTCA
63 TCTCAGGGAAATA--A-GACCTGGTGCG
* * *
21590318 ATCTACTCCGCTGTAATCTTAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCG
21590364 ATCTACTTCG
Statistics
Matches: 228, Mismatches: 61, Indels: 37
0.70 0.19 0.11
Matches are distributed among these distances:
85 48 0.21
86 7 0.03
87 69 0.30
88 73 0.32
89 7 0.03
90 24 0.11
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (87 bp):
ATCTACTCCACTGTAATCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATCT
CAGGGAAATAAGACCTGGTGCG
Found at i:21590133 original size:175 final size:174
Alignment explanation
Indices: 21589839--21590363 Score: 809
Period size: 175 Copynumber: 3.0 Consensus size: 174
21589829 TATGTTTTCA
* ** *** * * * *
21589839 GTCTGTTCCACTGCAA-CATCAGGGGGATAAGACCTGACACGCTCTCCTCTACTGTAATTTCAAA
1 GTCTGTTCCACTGTAATC-TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGA
**
21589903 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGCAGATAGGATTACTATATTCA
65 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGG-AGATAGGATTACTAGCTTCA
21589968 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
129 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
*
21590014 GTTTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAG
1 GTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAG
*
21590079 AGATAAGATCCTTTATTCTAATCCACTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAA
66 AGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAG-GAGATAGGATTACTAGCTTCAA
* *
21590144 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGAAATTCTTCG
130 TCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
*
21590189 GTCTGTTCCACTGTAATCTCAGGGGAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAG
1 GTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAG
** * *
21590254 AGATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAA
66 AGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCA-GGAGATAGGATTACTAGCTTCAA
*
21590319 TCTACTCCGCTGTAATCTTAGGGAGATAAGATCTGAAATTCTTCG
130 TCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
21590364 ATCTACTTCG
Statistics
Matches: 321, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
175 318 0.99
176 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (174 bp):
GTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGAGATAGGATTACTAGCTTCAAT
CTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
Found at i:21591689 original size:9 final size:9
Alignment explanation
Indices: 21591674--21591708 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
21591664 CCTCTCACAA
21591674 GTTTTTTGTT
1 GTTTTTT-TT
21591684 -TTTTTTTT
1 GTTTTTTTT
21591692 GTTTTTTTT
1 GTTTTTTTT
21591701 GTTTTTTT
1 GTTTTTTT
21591709 AGGAAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 2 0.08
9 22 0.92
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (9 bp):
GTTTTTTTT
Found at i:21591691 original size:11 final size:11
Alignment explanation
Indices: 21591675--21591708 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
21591665 CTCTCACAAG
21591675 TTTTTTGTTTT
1 TTTTTTGTTTT
21591686 TTTTTTG--TT
1 TTTTTTGTTTT
21591695 TTTTTTGTTTT
1 TTTTTTGTTTT
21591706 TTT
1 TTT
21591709 AGGAAGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.43
11 12 0.57
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:21605338 original size:3 final size:3
Alignment explanation
Indices: 21605330--21605389 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
21605320 AACTTGATGT
21605330 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
21605378 ATA ATA ATA ATA
1 ATA ATA ATA ATA
21605390 GTTAGTGGAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:21609607 original size:39 final size:39
Alignment explanation
Indices: 21609552--21609630 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
21609542 TCCTTAAGAC
*
21609552 TCAGGTTCAATTCTCCTTTTATAAACATATTTGTAATTT
1 TCAGGTTCAATCCTCCTTTTATAAACATATTTGTAATTT
*
21609591 TCAGGTTCAATCCTCCTTTTCTAAACATATTTGTAATTT
1 TCAGGTTCAATCCTCCTTTTATAAACATATTTGTAATTT
21609630 T
1 T
21609631 TACTTCATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.48
Consensus pattern (39 bp):
TCAGGTTCAATCCTCCTTTTATAAACATATTTGTAATTT
Found at i:21610297 original size:28 final size:31
Alignment explanation
Indices: 21610239--21610297 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
21610229 ATATATAGTT
21610239 TTTATATTATTTATAAAGGTTATAATAATAA
1 TTTATATTATTTATAAAGGTTATAATAATAA
* *
21610270 TTTATA-TA-TTAT-AATGTTATTATAATAA
1 TTTATATTATTTATAAAGGTTATAATAATAA
21610298 AAACAAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 14 0.54
29 4 0.15
30 2 0.08
31 6 0.23
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (31 bp):
TTTATATTATTTATAAAGGTTATAATAATAA
Found at i:21611292 original size:41 final size:42
Alignment explanation
Indices: 21611190--21611307 Score: 132
Period size: 41 Copynumber: 2.8 Consensus size: 42
21611180 TATGTGTTCT
* * *
21611190 CGTGTAAGACCACGTCTGGGA-AGATGGCATTGATATATGTGATTA
1 CGTGTAAGACCATGTCTAGGACAG-TGGCATCG-TAT-T-TGATTA
*
21611235 CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATT-
1 CGTGTAAGACCATGTCTAGGACAGTGGCATCGTATTTGATTA
* *
21611276 CGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 CGTGTAAGACCATGTCTAGGACAGTGGCATCG
21611308 ATATGAGATA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
41 29 0.45
42 5 0.08
43 1 0.02
44 3 0.05
45 26 0.40
46 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACAGTGGCATCGTATTTGATTA
Found at i:21614746 original size:15 final size:15
Alignment explanation
Indices: 21614727--21614777 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
21614717 TCCACCAAAT
*
21614727 AAAATATTATTTTTT
1 AAAATATTATTTTTA
* ** *
21614742 AAAATTTTAAATTAA
1 AAAATATTATTTTTA
21614757 AAAATATTATTTTTA
1 AAAATATTATTTTTA
21614772 AAAATA
1 AAAATA
21614778 AAAAACACAT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATATTATTTTTA
Found at i:21616330 original size:15 final size:14
Alignment explanation
Indices: 21616309--21616344 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
21616299 ATAATCCTTA
*
21616309 ATAATTATCTTAAT
1 ATAATTATCCTAAT
21616323 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
21616338 ATAATTA
1 ATAATTA
21616345 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:21620334 original size:36 final size:33
Alignment explanation
Indices: 21620254--21620336 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 33
21620244 AGTTTGTTCC
* *
21620254 AAGTTTGTTGCAATGAATCTAATTTAAGTTACA
1 AAGTTTGTTCCAATGAATCTAATTTAAGATACA
* *
21620287 AAATTTATTCCAATGAATCTCAATTAAATAA-ATACA
1 AAGTTTGTTCCAATGAATCT-AATT---TAAGATACA
21620323 AAGTTTGTTCCAAT
1 AAGTTTGTTCCAAT
21620337 TTTGTTCTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
33 17 0.43
34 4 0.10
36 16 0.40
37 3 0.08
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (33 bp):
AAGTTTGTTCCAATGAATCTAATTTAAGATACA
Found at i:21624615 original size:30 final size:28
Alignment explanation
Indices: 21624579--21624675 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 28
21624569 TATTTTTTTT
* *
21624579 AAAATTACATTTTAACCTTTAAACTTTCAA
1 AAAATTACATTTTGACC-CTAAACTTTC-A
*
21624609 AAAATTACATTTTGACCCCTAAACTTTCT
1 AAAATTACATTTTGA-CCCTAAACTTTCA
*
21624638 AAAATTACATTTTGACCCTAAATTTTCCA
1 AAAATTACATTTTGACCCTAAACTTT-CA
21624667 AAAATTACA
1 AAAATTACA
21624676 CATTAGCCCT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.17
29 25 0.42
30 23 0.38
31 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (28 bp):
AAAATTACATTTTGACCCTAAACTTTCA
Found at i:21624985 original size:17 final size:17
Alignment explanation
Indices: 21624965--21625005 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
21624955 AGGAAAGTAG
* *
21624965 AAAGGGGACGACGACGT
1 AAAGGAGACGACAACGT
21624982 AAAGGAGACGACAACGT
1 AAAGGAGACGACAACGT
*
21624999 GAAGGAG
1 AAAGGAG
21625006 GTGGCGGCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.39, T:0.05
Consensus pattern (17 bp):
AAAGGAGACGACAACGT
Found at i:21625060 original size:10 final size:10
Alignment explanation
Indices: 21625047--21625089 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
21625037 TAGAGCAAGG
21625047 AGAAAGAAGA
1 AGAAAGAAGA
*
21625057 AGAATGAAGGA
1 AGAAAGAA-GA
*
21625068 AAAAAGAAGA
1 AGAAAGAAGA
21625078 AGAAAGAAGA
1 AGAAAGAAGA
21625088 AG
1 AG
21625090 GAAAAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.02
Consensus pattern (10 bp):
AGAAAGAAGA
Found at i:21625105 original size:11 final size:10
Alignment explanation
Indices: 21625066--21625136 Score: 54
Period size: 10 Copynumber: 6.8 Consensus size: 10
21625056 AAGAATGAAG
*
21625066 GAAAAAAGAA
1 GAAAAAAAAA
21625076 GAAGAAAGAAGAA
1 GAA-AAA-AA-AA
* *
21625089 GGAAAAAAAG
1 GAAAAAAAAA
*
21625099 GAAAAAATAA
1 GAAAAAAAAA
*
21625109 -AAAAAGAAA
1 GAAAAAAAAA
21625118 GAAAAAAGAAA
1 GAAAAAA-AAA
21625129 GAAAAAAA
1 GAAAAAAA
21625137 TATCACAGCC
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
9 7 0.15
10 17 0.36
11 15 0.32
12 4 0.09
13 4 0.09
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:21625110 original size:15 final size:15
Alignment explanation
Indices: 21625092--21625138 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
21625082 AGAAGAAGGA
21625092 AAAAAAGGAAAAAAT
1 AAAAAAGGAAAAAAT
*
21625107 AAAAAAAGAAAGAAA-
1 AAAAAAGGAAA-AAAT
*
21625122 AAAGAAAGAAAAAAAT
1 AAA-AAAGGAAAAAAT
21625138 A
1 A
21625139 TCACAGCCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (15 bp):
AAAAAAGGAAAAAAT
Found at i:21625134 original size:24 final size:25
Alignment explanation
Indices: 21625047--21625136 Score: 85
Period size: 24 Copynumber: 3.6 Consensus size: 25
21625037 TAGAGCAAGG
* *
21625047 AGAAAGAAGAAGAATGAAGGAAAAA
1 AGAAAGAAGAAAAAAGAAGGAAAAA
*
21625072 AG-AAGAAGAAAGAAGAAGGAAAAAA
1 AGAAAGAAGAAAAAAGAAGG-AAAAA
* * *
21625097 AGGAAAAAATAAAAAAAGAAAGAAAAA
1 A-GAAAGAA-GAAAAAAGAAGGAAAAA
21625124 AGAAAGAA-AAAAA
1 AGAAAGAAGAAAAA
21625137 TATCACAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
24 19 0.36
25 8 0.15
26 7 0.13
27 10 0.19
28 9 0.17
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (25 bp):
AGAAAGAAGAAAAAAGAAGGAAAAA
Found at i:21625291 original size:14 final size:14
Alignment explanation
Indices: 21625257--21625294 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
21625247 GGCGACCCAG
21625257 GAGAAAA-AAAAAA
1 GAGAAAATAAAAAA
21625270 GAGAAAAATAAAAAA
1 GAG-AAAATAAAAAA
*
21625285 TAGAAAATAA
1 GAGAAAATAA
21625295 TAGCAGACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 3 0.14
14 11 0.50
15 8 0.36
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (14 bp):
GAGAAAATAAAAAA
Found at i:21625363 original size:28 final size:28
Alignment explanation
Indices: 21625329--21625382 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
21625319 GGCCCAAACT
* *
21625329 AGCAGGCTTGCGCCTGGCCCAACAGCAC
1 AGCAGGCTAGCACCTGGCCCAACAGCAC
*
21625357 AGCAGGCTAGCACTTGGCCCAACAGC
1 AGCAGGCTAGCACCTGGCCCAACAGC
21625383 CAACAGCCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.37, G:0.28, T:0.11
Consensus pattern (28 bp):
AGCAGGCTAGCACCTGGCCCAACAGCAC
Found at i:21633574 original size:38 final size:37
Alignment explanation
Indices: 21633498--21633579 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 37
21633488 ATTATGCCTA
* **
21633498 AAAAAAGAGTCAAAATGAAAACCCGAAAAGGGTGTCTTG
1 AAAAAA-A-TCAAAATGAAAACCCAAAAAGGGCATCTTG
*
21633537 ATAAAAAATCAAGATGAAAACCCAAAAAGGGCATCTTG
1 A-AAAAAATCAAAATGAAAACCCAAAAAGGGCATCTTG
21633575 AAAAA
1 AAAAA
21633580 CAAAAAAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 4 0.11
38 27 0.71
39 2 0.05
40 5 0.13
ACGTcount: A:0.54, C:0.13, G:0.18, T:0.15
Consensus pattern (37 bp):
AAAAAAATCAAAATGAAAACCCAAAAAGGGCATCTTG
Found at i:21633589 original size:38 final size:38
Alignment explanation
Indices: 21633512--21633589 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
21633502 AAGAGTCAAA
* ** **
21633512 ATGAAAACCCGAAAAGGGTGTCTTGATAAAAAATCAAG
1 ATGAAAACCCAAAAAGGGCATCTTGATAAAAAAAAAAG
21633550 ATGAAAACCCAAAAAGGGCATCTTGA-AAAACAAAAAAG
1 ATGAAAACCCAAAAAGGGCATCTTGATAAAA-AAAAAAG
21633588 AT
1 AT
21633590 TAGGATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
37 4 0.12
38 30 0.88
ACGTcount: A:0.53, C:0.14, G:0.18, T:0.15
Consensus pattern (38 bp):
ATGAAAACCCAAAAAGGGCATCTTGATAAAAAAAAAAG
Found at i:21634775 original size:78 final size:76
Alignment explanation
Indices: 21634410--21635580 Score: 1365
Period size: 78 Copynumber: 15.2 Consensus size: 76
21634400 ACCATTTCTT
* * *
21634410 TTTATGTTTTTCAAAAATCAACTCATAATGCAAGATGTGAGTTGAGCCTCGGGTCACACGCCGAG
1 TTTATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
*
21634475 GTTTTTTTCAA
66 GTATTTTTCAA
* * * *
21634486 TTTCTATTTTTTTTCAAAACTCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCGCACGCT
1 -TT-TA-TGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
*
21634551 GAGGTACTTTTCAA
63 GAGGTATTTTTCAA
* * ** *
21634565 TTTCTATTTTTCAAAAATCAACTCATAATGCGAGAAATAAGTTGAGCCTCGGGTCACACG-TCGA
1 TTTATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT-GA
*
21634629 AGTATTTTTCAA
65 GGTATTTTTCAA
* * * * *
21634641 TTTCTAT-TTTTTTAAAACTCAACTCATAATGCCAAAGGTGAGTTGAGCCACGGGTCACACGCTG
1 -TT-TATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
*
21634705 ATGTATTTTTCAA
64 AGGTATTTTTCAA
* ** * *
21634718 TTTATGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGACTAAGGTCACACACTA
1 TTTATGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
21634783 AGGTATTTTTCAA
64 AGGTATTTTTCAA
* * *
21634796 TTTCTATATTTTTCAAAAATCAACTTATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACCCTG
1 -TT-TATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
21634861 AGGTATTTTTCAA
64 AGGTATTTTTCAA
* *
21634874 TTTCTGTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTG
1 TTTATG--TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
*
21634939 AGGTATTATTCAA
64 AGGTATTTTTCAA
* * *
21634952 TTTATGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCGGGTCGCACGCCG
1 TTTATGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
21635017 AGGTATTTTTCAA
64 AGGTATTTTTCAA
* * * * * *
21635030 TTTATGTTTTTCAAAAAAATTTAACTCATAATGTGAGATGTGAGTTGAGCCTCGAGTCACACACC
1 TTTATGTTTTTC--AAAAA-TCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT
*
21635095 GAGGTATTTTTGAA
63 GAGGTATTTTTCAA
* * * *
21635109 TTTATGTTTTTGAAAAATATCAACTCATAATGCGAGAGGTGAGTT-ATGCCTCGGGCCGCACGTT
1 TTTATGTTTTT-CAAAA-ATCAACTCATAATGCGAGAGGTGAGTTGA-GCCTCGGGTCACACGCT
21635173 GAGGTATTTTTCAA
63 GAGGTATTTTTCAA
* * * *
21635187 TTTCTGTTTTTCAAAAATTAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG-CACATGCCGAG
1 TTTATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
21635251 GTATTTTTCAA
66 GTATTTTTCAA
* ** * * *
21635262 TTTCCAT-TCTTTCAAAAATCAACTCATAATATGAGAGGTGAGTTGAGCCTCGGG-CAAATGCCG
1 TTT--ATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
*
21635325 AGGTATTTTTTAA
64 AGGTATTTTTCAA
* *
21635338 TTTATGTTTTTCAAAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTG
1 TTTATGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTG
21635403 AGG-A-TTTTCAA
64 AGGTATTTTTCAA
* * * * * * *
21635414 TTTCTGTTCTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTTGGGTCGCACGCTGAG
1 TTTATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
21635479 GTATTTTT-AA
66 GTATTTTTCAA
* * * ** *
21635489 TTTCTGTTTTTCAAAGATCAACTCATAAT-CTGAGAGGTGAGTTGAGCTTCGGGTCGTACCCTGA
1 TTTATGTTTTTCAAAAATCAACTCATAATGC-GAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
* *
21635553 GCTATTTTT-TA
65 GGTATTTTTCAA
*
21635564 TTTCTGTTTTTCAAAAA
1 TTTATGTTTTTCAAAAA
21635581 AGAAATTTAG
Statistics
Matches: 955, Mismatches: 110, Indels: 60
0.85 0.10 0.05
Matches are distributed among these distances:
74 54 0.06
75 116 0.12
76 196 0.21
77 113 0.12
78 339 0.35
79 128 0.13
80 9 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (76 bp):
TTTATGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAG
GTATTTTTCAA
Found at i:21635743 original size:30 final size:30
Alignment explanation
Indices: 21635709--21635867 Score: 171
Period size: 29 Copynumber: 5.4 Consensus size: 30
21635699 ATTTTTTTAT
*
21635709 AATTACATTTTGACCCCTAAATTTTCCTAA
1 AATTACATTTTGACCCTTAAATTTTCCTAA
* *
21635739 AATTAC-TTTTAACCCTTAAACTTTCCTAA
1 AATTACATTTTGACCCTTAAATTTTCCTAA
* * *
21635768 AATCACATTTTGACCTTTAAAATTTCCTAA
1 AATTACATTTTGACCCTTAAATTTTCCTAA
* * *
21635798 AATTATATTTTGACCCTTAAA-CTTCTTAA
1 AATTACATTTTGACCCTTAAATTTTCCTAA
* * * *
21635827 AACTATATTTTAACCC-TAAATTTTCCAAA
1 AATTACATTTTGACCCTTAAATTTTCCTAA
*
21635856 AATTACACTTTG
1 AATTACATTTTG
21635868 GCACCAAAGT
Statistics
Matches: 106, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
28 4 0.04
29 58 0.55
30 44 0.42
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (30 bp):
AATTACATTTTGACCCTTAAATTTTCCTAA
Found at i:21635828 original size:59 final size:59
Alignment explanation
Indices: 21635713--21635860 Score: 167
Period size: 59 Copynumber: 2.5 Consensus size: 59
21635703 TTTTATAATT
* *
21635713 ACATTTTGACCCCTAAATTTTCCTAAAATTACTTTTAACCCTTAAACTTTCCTAAAATC
1 ACATTTTGACCCCTAAAATTTCCTAAAATTAATTTTAACCCTTAAACTTTCCTAAAATC
** * *
21635772 ACATTTTGACCTTTAAAATTTCCTAAAATTATATTTTGACCCTTAAAC-TTCTTAAAA-C
1 ACATTTTGACCCCTAAAATTTCCTAAAATTA-ATTTTAACCCTTAAACTTTCCTAAAATC
* * * *
21635830 TATATTTT-AACCCTAAATTTTCCAAAAATTA
1 -ACATTTTGACCCCTAAAATTTCCTAAAATTA
21635861 CACTTTGGCA
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
58 19 0.25
59 42 0.56
60 14 0.19
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.41
Consensus pattern (59 bp):
ACATTTTGACCCCTAAAATTTCCTAAAATTAATTTTAACCCTTAAACTTTCCTAAAATC
Found at i:21636555 original size:15 final size:15
Alignment explanation
Indices: 21636505--21636564 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
21636495 CCAGCACTTG
* *
21636505 GCCCAACAGCTAGCA
1 GCCCAGCAGCCAGCA
*
21636520 GCCCATCAGCCAGCA
1 GCCCAGCAGCCAGCA
21636535 GCCCAGCAG-CAGGCA
1 GCCCAGCAGCCA-GCA
21636550 GCCCAGC--CCAGCA
1 GCCCAGCAGCCAGCA
21636563 GC
1 GC
21636565 AAAGAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
13 5 0.12
14 4 0.10
15 31 0.77
ACGTcount: A:0.27, C:0.45, G:0.25, T:0.03
Consensus pattern (15 bp):
GCCCAGCAGCCAGCA
Found at i:21639098 original size:49 final size:49
Alignment explanation
Indices: 21639015--21639112 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
21639005 GAAAAATTCA
* *
21639015 AATTTAACTAAAAATACTAAAAATTAAGAAAAAATATCTGATTTGTCAT
1 AATTTAACTAAAAATACTAAAAACTAAGAAAAAATATCTAATTTGTCAT
* * *
21639064 AATTTAACTAAAAATGCTAAAAACTAGGAGAAAATATCTAATTTGTCAT
1 AATTTAACTAAAAATACTAAAAACTAAGAAAAAATATCTAATTTGTCAT
21639113 TCTCATATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (49 bp):
AATTTAACTAAAAATACTAAAAACTAAGAAAAAATATCTAATTTGTCAT
Found at i:21641151 original size:41 final size:41
Alignment explanation
Indices: 21641081--21641177 Score: 140
Period size: 41 Copynumber: 2.4 Consensus size: 41
21641071 AATACACCTA
* * *
21641081 CATTAAACCTGCTAGACGTAAGGTCTGAAATATTTCACCGG
1 CATTAAGCCTGCTAGAAGTAAAGTCTGAAATATTTCACCGG
* * *
21641122 CATTAAGCCTACTAGAAGTAAAGTTTGAAATATTTCACTGG
1 CATTAAGCCTGCTAGAAGTAAAGTCTGAAATATTTCACCGG
21641163 CATTAAGCCTGCTAG
1 CATTAAGCCTGCTAG
21641178 GCACAAAGCC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (41 bp):
CATTAAGCCTGCTAGAAGTAAAGTCTGAAATATTTCACCGG
Found at i:21641192 original size:41 final size:41
Alignment explanation
Indices: 21641105--21641192 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
21641095 GACGTAAGGT
* *
21641105 CTGAAATATTTCACCGGCATTAAGCCTACTAGAAGTAAAGT
1 CTGAAATATTTCACCGGCATTAAGCCTACTAGAAGCAAAGC
* * * *
21641146 TTGAAATATTTCACTGGCATTAAGCCTGCTAGGCA-CAAAGC
1 CTGAAATATTTCACCGGCATTAAGCCTACTA-GAAGCAAAGC
21641187 CTGAAA
1 CTGAAA
21641193 ATCTCATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 37 0.95
42 2 0.05
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (41 bp):
CTGAAATATTTCACCGGCATTAAGCCTACTAGAAGCAAAGC
Found at i:21641410 original size:65 final size:68
Alignment explanation
Indices: 21641341--21641496 Score: 178
Period size: 71 Copynumber: 2.3 Consensus size: 68
21641331 CGACTTTAAC
* * *
21641341 TTCAGCTCAAGGAATTTGTAA-CTAATATTCGAACC-T-TATATGTATATA-AAATTCATACAT-
1 TTCAGCTCAAGAAACTTGTAACCT-ATATTCAAACCATATATATGTATATAGAAATTCATA-ATA
21641401 TAAAA
64 TAAAA
21641406 TTCAGCTCAAGAAACTTGTAACCTATATTCAAACCATATATATATGTATATATGAAATTCATAAT
1 TTCAGCTCAAGAAACTTGTAACCTATATTCAAACC--ATATATATGTATATA-GAAATTCATAAT
* *
21641471 ATTAAG
63 ATAAAA
*
21641477 TTCAGCTCAATAAACTTGTA
1 TTCAGCTCAAGAAACTTGTA
21641497 TCATACATTC
Statistics
Matches: 77, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
65 29 0.38
66 2 0.03
68 1 0.01
69 12 0.16
70 2 0.03
71 31 0.40
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (68 bp):
TTCAGCTCAAGAAACTTGTAACCTATATTCAAACCATATATATGTATATAGAAATTCATAATATA
AAA
Found at i:21641481 original size:71 final size:65
Alignment explanation
Indices: 21641335--21641496 Score: 175
Period size: 65 Copynumber: 2.4 Consensus size: 65
21641325 AATTCACGAC
* * * *
21641335 TTTAACTTCAGCTCAAGGAATTTGTAACTAATATTCGAACCTTATATGTATATAAAATTCATACA
1 TTTAAATTCAGCTCAAGAAACTTGTAACTAATATTCAAACCTTATATGTATATAAAATTCATACA
*
21641400 TTAAAATTCAGCTCAAGAAACTTGTAACCT-ATATTCAAACCATATATATATGTATATATGAAAT
1 TTTAAATTCAGCTCAAGAAACTTGTAA-CTAATATTCAAACC---T-TATATGTATATA--AAAT
21641464 TCATA-A
59 TCATACA
* *
21641470 TATTAAGTTCAGCTCAATAAACTTGTA
1 T-TTAAATTCAGCTCAAGAAACTTGTA
21641497 TCATACATTC
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
65 33 0.41
66 2 0.02
68 1 0.01
69 12 0.15
70 2 0.02
71 31 0.38
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.36
Consensus pattern (65 bp):
TTTAAATTCAGCTCAAGAAACTTGTAACTAATATTCAAACCTTATATGTATATAAAATTCATACA
Found at i:21649689 original size:138 final size:138
Alignment explanation
Indices: 21649438--21649708 Score: 404
Period size: 138 Copynumber: 2.0 Consensus size: 138
21649428 TAACAAGTTT
* *
21649438 ACTAGAAGGACATTGTCCAATTGGAGTCAAATGGATGTACAAGACAAAGACCAACAAAAAAGGAA
1 ACTAGAAGGACATAGTCCAATTGAAGTCAAATGGATGTACAAGACAAAGACCAACAAAAAAGGAA
* *
21649503 AAGTGGAGAAATACAAAGCAAGACTGATTGCAAAGGGCTTCAAGTAAAGAC-ATAGAGTGGACTA
66 AAGTGGAGAAATACAAAGCAAGACTGATTGCAAAAGGCTACAAGTAAAGACAAT-GAGTGGACTA
21649567 TGATGAAGG
130 TGATGAAGG
* * *
21649576 ACTAGAAGGACATAGTCCAATTGAAGTCAAAT-GAGTGTACAAGACAAATACTAACAAAGAAGGA
1 ACTAGAAGGACATAGTCCAATTGAAGTCAAATGGA-TGTACAAGACAAAGACCAACAAAAAAGGA
* * *
21649640 AAATTGGAGAAATACAAAGTAAGACT-AGTTGCAAAAGGCTACAATTAAAGACAATGAGTGGACT
65 AAAGTGGAGAAATACAAAGCAAGACTGA-TTGCAAAAGGCTACAAGTAAAGACAATGAGTGGACT
21649704 ATGAT
129 ATGAT
21649709 TGAGTATTTA
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
137 3 0.03
138 115 0.96
139 2 0.02
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.18
Consensus pattern (138 bp):
ACTAGAAGGACATAGTCCAATTGAAGTCAAATGGATGTACAAGACAAAGACCAACAAAAAAGGAA
AAGTGGAGAAATACAAAGCAAGACTGATTGCAAAAGGCTACAAGTAAAGACAATGAGTGGACTAT
GATGAAGG
Found at i:21651483 original size:3 final size:3
Alignment explanation
Indices: 21651475--21651524 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
21651465 GTGTGAGTAA
*
21651475 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
21651523 AA
1 AA
21651525 AGACTATGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:21653633 original size:41 final size:41
Alignment explanation
Indices: 21653576--21653661 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
21653566 AACCCCCCAT
21653576 CATATAGTATGATTAAAGGATATGATAAACAACCATCACAC
1 CATATAGTATGATTAAAGGATATGATAAACAACCATCACAC
21653617 CATATAGTATGATTAAAGGATATGATAAACAACCATCACAC
1 CATATAGTATGATTAAAGGATATGATAAACAACCATCACAC
21653658 CATA
1 CATA
21653662 CCTTATAATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.24
Consensus pattern (41 bp):
CATATAGTATGATTAAAGGATATGATAAACAACCATCACAC
Found at i:21654077 original size:21 final size:21
Alignment explanation
Indices: 21654051--21654093 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
21654041 GGTTCGCTGT
*
21654051 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
21654072 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
21654093 A
1 A
21654094 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:21654093 original size:16 final size:16
Alignment explanation
Indices: 21654074--21654106 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
21654064 TGTATTGGAT
*
21654074 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
21654090 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
21654106 T
1 T
21654107 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:21654151 original size:45 final size:44
Alignment explanation
Indices: 21654085--21654179 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
21654075 GGATTAGAGG
* *
21654085 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
21654130 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
21654174 TGTAAT
1 TGTAAT
21654180 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:21654362 original size:18 final size:17
Alignment explanation
Indices: 21654341--21654375 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21654331 TTATTATTTA
*
21654341 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
21654359 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
21654376 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:21654369 original size:28 final size:27
Alignment explanation
Indices: 21654299--21654371 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
21654289 TTTATTATCA
*
21654299 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
21654327 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
21654354 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
21654372 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:21654488 original size:144 final size:147
Alignment explanation
Indices: 21654260--21654531 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
21654250 ATGATTATTG
21654260 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
*
21654325 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
21654390 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
21654409 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
21654471 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
21654532 ATATTCTTAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 92 0.76
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:21654506 original size:18 final size:17
Alignment explanation
Indices: 21654485--21654519 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21654475 TTATTATTAA
*
21654485 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
21654503 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
21654520 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:21654563 original size:54 final size:54
Alignment explanation
Indices: 21654505--21654683 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
21654495 ATTAAAATAT
*
21654505 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
21654559 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
21654622 TAT
53 -AC
*
21654625 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
21654679 ATAAT
1 ATAAT
21654684 ATATGATTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:21654565 original size:61 final size:61
Alignment explanation
Indices: 21654500--21654687 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
21654490 TTTTAATTAA
*
21654500 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
21654561 AATATATGATACT-GTAAAA-T-ATAA-AATAACATAATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA-AT-ATTCTTATATGAATTTACTCA-AATCAT
21654620 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
21654681 AATATAT
1 AATATAT
21654688 GATTATAACT
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 29 0.31
60 16 0.17
61 37 0.39
62 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:21654598 original size:120 final size:120
Alignment explanation
Indices: 21654468--21654690 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
21654458 ATCATATTTA
* *
21654468 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
21654533 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
21654588 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
21654653 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGAT
21654691 TATAACTAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Found at i:21654626 original size:18 final size:17
Alignment explanation
Indices: 21654605--21654639 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21654595 TTATTATTAA
21654605 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
21654623 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
21654640 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:21654702 original size:17 final size:16
Alignment explanation
Indices: 21654680--21654726 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
21654670 ACTCAAATCA
21654680 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
21654697 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
21654711 TAAATATATGATTTAA
1 T-AATATATGATTTAA
21654727 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:21654727 original size:17 final size:17
Alignment explanation
Indices: 21654699--21654732 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21654689 ATTATAACTA
*
21654699 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
21654716 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
21654733 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:21654875 original size:93 final size:92
Alignment explanation
Indices: 21654765--21654959 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
21654755 GATTATAGTT
* * *
21654765 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
21654828 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
21654858 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
21654923 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
21654950 TATGAATTTA
1 TATGAATTTA
21654960 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:21656374 original size:11 final size:11
Alignment explanation
Indices: 21656360--21656386 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
21656350 AAAAATCAAT
21656360 ACAAAAGTTTC
1 ACAAAAGTTTC
21656371 ACAAAAGTTTC
1 ACAAAAGTTTC
21656382 ACAAA
1 ACAAA
21656387 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:21658651 original size:15 final size:15
Alignment explanation
Indices: 21658631--21658661 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
21658621 ATATTATGTA
21658631 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
21658646 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
21658661 T
1 T
21658662 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:21674885 original size:22 final size:22
Alignment explanation
Indices: 21674860--21674911 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
21674850 GACAATGGCG
* *
21674860 TCGTGATGTCAAGCTCTCAATA
1 TCGTGATGCCAAGCTCTCAACA
** *
21674882 TCGTGACACCAAGCTCTCAACG
1 TCGTGATGCCAAGCTCTCAACA
21674904 TCGTGATG
1 TCGTGATG
21674912 AGGACAAGTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (22 bp):
TCGTGATGCCAAGCTCTCAACA
Found at i:21676117 original size:21 final size:21
Alignment explanation
Indices: 21676091--21676150 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
21676081 TTCTCTAACC
21676091 ATGGTCAAAATTATTTTGAAA
1 ATGGTCAAAATTATTTTGAAA
** *
21676112 ATGGTCAAAATTATAATGGAA
1 ATGGTCAAAATTATTTTGAAA
* *
21676133 GTGGTCAGAATTATTTTG
1 ATGGTCAAAATTATTTTG
21676151 CTGGTCAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.37
Consensus pattern (21 bp):
ATGGTCAAAATTATTTTGAAA
Found at i:21676173 original size:18 final size:17
Alignment explanation
Indices: 21676133--21676178 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
21676123 TATAATGGAA
* *
21676133 GTGGTCAGAATTATTTT
1 GTGGTCAAAATTATATT
21676150 GCTGGTCAAAATTATGATT
1 G-TGGTCAAAATTAT-ATT
21676169 GTGGTCAAAA
1 GTGGTCAAAA
21676179 GTGGTATGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 21 0.84
19 3 0.12
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.37
Consensus pattern (17 bp):
GTGGTCAAAATTATATT
Found at i:21687482 original size:75 final size:75
Alignment explanation
Indices: 21687389--21687535 Score: 240
Period size: 75 Copynumber: 2.0 Consensus size: 75
21687379 TCTTAATTTA
* *
21687389 TAGTAGGATTTTCAAGAGTCAAATTAAAACTGGAAAAATCGCGCGTACCAAATTGTAAAACGCTC
1 TAGTAGGATTTTCAAGAGTCAAATTAAAACTGGAAAAATCGCGCATACCAAATCGTAAAACGCTC
21687454 GATCGCTTTC
66 GATCGCTTTC
** * *
21687464 TAGTAGGATTTTCAAGAGTTGAATTAAAACTGGAAAATTCGCGCATACCAAATCGTAAAGCGCTC
1 TAGTAGGATTTTCAAGAGTCAAATTAAAACTGGAAAAATCGCGCATACCAAATCGTAAAACGCTC
21687529 GATCGCT
66 GATCGCT
21687536 CGTTCGATGC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (75 bp):
TAGTAGGATTTTCAAGAGTCAAATTAAAACTGGAAAAATCGCGCATACCAAATCGTAAAACGCTC
GATCGCTTTC
Found at i:21688855 original size:14 final size:14
Alignment explanation
Indices: 21688838--21688865 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
21688828 TCTTTTTATT
21688838 TTATTTTCTTTTAA
1 TTATTTTCTTTTAA
21688852 TTATTTTCTTTTAA
1 TTATTTTCTTTTAA
21688866 CTTTCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATTTTCTTTTAA
Found at i:21691035 original size:27 final size:27
Alignment explanation
Indices: 21690997--21691056 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
21690987 ACTGTGATAA
21690997 GTCCTACTGCTGAGGACTTCTAGGATT
1 GTCCTACTGCTGAGGACTTCTAGGATT
21691024 GTCCTACTGCTGAGGACTTCTAGGATT
1 GTCCTACTGCTGAGGACTTCTAGGATT
21691051 GTCCTA
1 GTCCTA
21691057 AGTAACTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.33
Consensus pattern (27 bp):
GTCCTACTGCTGAGGACTTCTAGGATT
Found at i:21696266 original size:30 final size:32
Alignment explanation
Indices: 21696221--21696280 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
21696211 AGGGAGGAGA
* *
21696221 TGGGAGAGAAGTAAAAGTTTT-TGGGAAAAAG
1 TGGGAGAGAAGTAAAAATTTTGAGGGAAAAAG
*
21696252 TGGGAG-GGAGTAAAAATTTTGAGGGAAAA
1 TGGGAGAGAAGTAAAAATTTTGAGGGAAAA
21696281 TAAAAAGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.22
Consensus pattern (32 bp):
TGGGAGAGAAGTAAAAATTTTGAGGGAAAAAG
Found at i:21696795 original size:12 final size:12
Alignment explanation
Indices: 21696759--21696798 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
21696749 AATTTTAAAA
21696759 TTTTAAAATTAT
1 TTTTAAAATTAT
21696771 TATTTATAAATTAT
1 T-TTTA-AAATTAT
21696785 TTTTAAAATTAT
1 TTTTAAAATTAT
21696797 TT
1 TT
21696799 ATCTGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 10 0.38
13 8 0.31
14 8 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:21701970 original size:21 final size:21
Alignment explanation
Indices: 21701944--21701984 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21701934 AGACGAGCAA
* *
21701944 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
21701965 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
21701985 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:21706133 original size:6 final size:6
Alignment explanation
Indices: 21706123--21706155 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
21706113 CACTAACAAC
*
21706123 AATACC AATACT AATACT AATACT AATACT AAT
1 AATACT AATACT AATACT AATACT AATACT AAT
21706156 TGAATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (6 bp):
AATACT
Found at i:21706705 original size:25 final size:24
Alignment explanation
Indices: 21706675--21706727 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
21706665 GGTCTGAATA
21706675 AATTAGATGTAAATGTCGATTTTTT
1 AATTAGATGTAAATGTCG-TTTTTT
* * **
21706700 AATTAGGTTTTTATGTCGTTTTTT
1 AATTAGATGTAAATGTCGTTTTTT
21706724 AATT
1 AATT
21706728 TAGAGAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.55
Consensus pattern (24 bp):
AATTAGATGTAAATGTCGTTTTTT
Found at i:21708688 original size:21 final size:21
Alignment explanation
Indices: 21708576--21708691 Score: 130
Period size: 21 Copynumber: 5.4 Consensus size: 21
21708566 TTTATTTATT
*
21708576 TTTTTATAAAATTTTAAATGTA
1 TTTTT-TAAAATTTTAAATATA
* *
21708598 TATTTGAAAAGTTTTATAATATTA
1 TTTTTTAAAA-TTTTA-AATA-TA
21708622 TTTTTTAAAATTTTAAA-ATTA
1 TTTTTTAAAATTTTAAATA-TA
21708643 TTTTTTAAAA-TTTAAATAT-
1 TTTTTTAAAATTTTAAATATA
21708662 TATTTTTAAAATTTTAAATATA
1 T-TTTTTAAAATTTTAAATATA
21708684 TTTTTTAA
1 TTTTTTAA
21708692 TAAATAAAAC
Statistics
Matches: 82, Mismatches: 5, Indels: 15
0.80 0.05 0.15
Matches are distributed among these distances:
19 1 0.01
20 16 0.20
21 35 0.43
22 12 0.15
23 8 0.10
24 10 0.12
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (21 bp):
TTTTTTAAAATTTTAAATATA
Done.