Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 74 of 228
Found at i:22016817 original size:22 final size:21
Alignment explanation
Indices: 22016787--22016832 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
22016777 ATTCAACTAT
* * *
22016787 ATTTTAAAAACAAAATGGAACC
1 ATTTGAAAAA-AAAAAGGAAAC
22016809 ATTTGAAAAAAAAAAGGAAAC
1 ATTTGAAAAAAAAAAGGAAAC
22016830 ATT
1 ATT
22016833 ATGTTATTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.59, C:0.09, G:0.11, T:0.22
Consensus pattern (21 bp):
ATTTGAAAAAAAAAAGGAAAC
Found at i:22022571 original size:16 final size:16
Alignment explanation
Indices: 22022550--22022587 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
22022540 AATAGTTTCG
*
22022550 GATACAGAGCA-ATTCA
1 GATACACAGCAGA-TCA
22022566 GATACACAGCAGATCA
1 GATACACAGCAGATCA
22022582 GATACA
1 GATACA
22022588 AAAACAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.16
Consensus pattern (16 bp):
GATACACAGCAGATCA
Found at i:22025359 original size:113 final size:113
Alignment explanation
Indices: 22025216--22025438 Score: 410
Period size: 113 Copynumber: 2.0 Consensus size: 113
22025206 AAAAGCGAAT
*
22025216 CTCTATCTGTGATAAGCAAAATCAAGATTTCATGTAACCTCACAATCTTAGACACGTACAGTTTA
1 CTCTATCCGTGATAAGCAAAATCAAGATTTCATGTAACCTCACAATCTTAGACACGTACAGTTTA
*
22025281 GCTAACCTCTATAGCAAATAATCGGTTTTGATTAGAAGAAAATGTAAC
66 GCTAACCTCTATAGCAAATAATCGGTTCTGATTAGAAGAAAATGTAAC
* *
22025329 CTCTATCCGTGATAAGCAAAATCGAGATTTCATGTAACCTCACAATCTTAGACATGTACAGTTTA
1 CTCTATCCGTGATAAGCAAAATCAAGATTTCATGTAACCTCACAATCTTAGACACGTACAGTTTA
22025394 GCTAACCTCTATAGCAAATAATCGGTTCTGATTAGAAGAAAATGT
66 GCTAACCTCTATAGCAAATAATCGGTTCTGATTAGAAGAAAATGT
22025439 GTAGACTTGG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 106 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (113 bp):
CTCTATCCGTGATAAGCAAAATCAAGATTTCATGTAACCTCACAATCTTAGACACGTACAGTTTA
GCTAACCTCTATAGCAAATAATCGGTTCTGATTAGAAGAAAATGTAAC
Found at i:22026614 original size:120 final size:121
Alignment explanation
Indices: 22026393--22026639 Score: 424
Period size: 120 Copynumber: 2.0 Consensus size: 121
22026383 TGTCAGAACG
*
22026393 AACTTGAGCTTCTCAAAGCTCGACTGATACTCCTCAGACCACCTGAATAGGGCATTCTTACGCAG
1 AACTTGAGCTTCTCAAAGCTCAACTGATACTCCTCAGACCACCTGAATAGGGCATTCTTACGCAG
* * *
22026458 TAACTTAGTCATGGGAGATACAATCAGGGAGAATCCCTTGATAAACTTCTAGTAGT
66 TAACTTAGTCATGGGAGATACAATCAGGGAGAATCCCTCGATAAACCTCCAGTAGT
* *
22026514 AACTTGA-CTTCTTAAAGCTCAACTGATACTCCTCAGACCACCTGAATGGGGCATTCTTACGCAG
1 AACTTGAGCTTCTCAAAGCTCAACTGATACTCCTCAGACCACCTGAATAGGGCATTCTTACGCAG
*
22026578 TAACTTAGTCATGGGAGATACAATCAGGGAGAATCCCTCGATAAACCTCCGGTAGT
66 TAACTTAGTCATGGGAGATACAATCAGGGAGAATCCCTCGATAAACCTCCAGTAGT
22026634 AACTTG
1 AACTTG
22026640 CTAACCCGAG
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
120 112 0.94
121 7 0.06
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (121 bp):
AACTTGAGCTTCTCAAAGCTCAACTGATACTCCTCAGACCACCTGAATAGGGCATTCTTACGCAG
TAACTTAGTCATGGGAGATACAATCAGGGAGAATCCCTCGATAAACCTCCAGTAGT
Found at i:22029015 original size:19 final size:19
Alignment explanation
Indices: 22028991--22029048 Score: 116
Period size: 19 Copynumber: 3.1 Consensus size: 19
22028981 TGTGACCCTC
22028991 ATCCACGACTTCCTTGTGA
1 ATCCACGACTTCCTTGTGA
22029010 ATCCACGACTTCCTTGTGA
1 ATCCACGACTTCCTTGTGA
22029029 ATCCACGACTTCCTTGTGA
1 ATCCACGACTTCCTTGTGA
22029048 A
1 A
22029049 CTCATAAGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (19 bp):
ATCCACGACTTCCTTGTGA
Found at i:22034116 original size:21 final size:21
Alignment explanation
Indices: 22034083--22034126 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
22034073 CAAAAGAAGA
22034083 AGGAACACACCCAGTCCAATC
1 AGGAACACACCCAGTCCAATC
* *
22034104 AGGAGCACGCCCAGTCCAATC
1 AGGAACACACCCAGTCCAATC
22034125 AG
1 AG
22034127 CCAAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.36, G:0.20, T:0.09
Consensus pattern (21 bp):
AGGAACACACCCAGTCCAATC
Found at i:22039323 original size:16 final size:16
Alignment explanation
Indices: 22039302--22039354 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
22039292 TTGGTTCGCT
*
22039302 GTAATGGAATAGAGAC
1 GTAATGGAATAGAGGC
22039318 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
*
22039334 GTAATGGAATTGAGGC
1 GTAATGGAATAGAGGC
22039350 GTAAT
1 GTAAT
22039355 AGCAATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.38, C:0.06, G:0.34, T:0.23
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:22039385 original size:45 final size:44
Alignment explanation
Indices: 22039334--22039430 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
22039324 GAATAGAGGC
* *
22039334 GTAATGGAATTGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGACGTAATAG-AATTC-ATGTGTTTGGTTGAAT
* *
22039379 GTAATGGAATAGAGACGTAATAGTATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGACGTAATAGAATTCATGTGTTTGGTTGAAT
*
22039423 GGAATGGA
1 GTAATGGA
22039431 GGTGTAATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 24 0.52
45 21 0.46
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
GTAATGGAATAGAGACGTAATAGAATTCATGTGTTTGGTTGAAT
Found at i:22041568 original size:190 final size:190
Alignment explanation
Indices: 22041245--22041624 Score: 733
Period size: 190 Copynumber: 2.0 Consensus size: 190
22041235 TGCAGATCTA
22041245 TCAATGACATTTCAAATTTGTTTGCAGATGGAAAACAAAAAGAAAGACGATAACTATCTAGAGGT
1 TCAATGACATTTCAAATTTGTTTGCAGATGGAAAACAAAAAGAAAGACGATAACTATCTAGAGGT
*
22041310 TGTAATTGTTAAAAATTTACAATAAATGAGACTTTTTAATTAAAAGGCTCACCCTTGCCAATTTT
66 TGTAATTATTAAAAATTTACAATAAATGAGACTTTTTAATTAAAAGGCTCACCCTTGCCAATTTT
*
22041375 TGTGACTTAGCATCCACCCATCAATGGTAAAAAGAAGAAAGGACCAAGCGGATATCATGG
131 TGTGACTTAGCACCCACCCATCAATGGTAAAAAGAAGAAAGGACCAAGCGGATATCATGG
22041435 TCAATGACATTTCAAATTTGTTTGCAGATGGAAAACAAAAAGAAAGACGATAACTATCTAGAGGT
1 TCAATGACATTTCAAATTTGTTTGCAGATGGAAAACAAAAAGAAAGACGATAACTATCTAGAGGT
22041500 TGTAATTATTAAAAATTTACAATAAATGAGACTTTTTAATTAAAAGGCTCACCCTTGCCAATTTT
66 TGTAATTATTAAAAATTTACAATAAATGAGACTTTTTAATTAAAAGGCTCACCCTTGCCAATTTT
*
22041565 TGTGACTTAGCCCCCACCCATCAATGGTAAAAAGAAGAAAGGACCAAGCGGATATCATGG
131 TGTGACTTAGCACCCACCCATCAATGGTAAAAAGAAGAAAGGACCAAGCGGATATCATGG
22041625 CAGTTAAAAC
Statistics
Matches: 187, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
190 187 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (190 bp):
TCAATGACATTTCAAATTTGTTTGCAGATGGAAAACAAAAAGAAAGACGATAACTATCTAGAGGT
TGTAATTATTAAAAATTTACAATAAATGAGACTTTTTAATTAAAAGGCTCACCCTTGCCAATTTT
TGTGACTTAGCACCCACCCATCAATGGTAAAAAGAAGAAAGGACCAAGCGGATATCATGG
Found at i:22043633 original size:17 final size:17
Alignment explanation
Indices: 22043611--22043651 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
22043601 ATTTGACACC
* *
22043611 CAAAAGTGATTTTGCAG
1 CAAAAGCGATTTTACAG
22043628 CAAAAGCGATTTTACAG
1 CAAAAGCGATTTTACAG
22043645 CAAAAGC
1 CAAAAGC
22043652 TCAAATTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (17 bp):
CAAAAGCGATTTTACAG
Found at i:22048754 original size:90 final size:89
Alignment explanation
Indices: 22048601--22048893 Score: 320
Period size: 90 Copynumber: 3.3 Consensus size: 89
22048591 CACCGGGTTA
* * * * * * *
22048601 TGGATAAACCACAAAAGTTACAGGTTAATACGCTGGCAAATGGTTGTGAGTACACAACGTAATTG
1 TGGATGAACCACCAATGTTGCAGGTTAATACGCTGTCAGATGGTTGTGA-TACACAACATAATTG
* * **
22048666 CAGATGAGAGCAGCCAGAATGTGGG
65 CAGATAAGAGCAGCCAAAAAATGGG
* *
22048691 TGGATGAACCACCAATGTTGCAGGTTAATACGTTGTTAGATGGTTGTGGATACACAACATAATTG
1 TGGATGAACCACCAATGTTGCAGGTTAATACGCTGTCAGATGGTTGT-GATACACAACATAATTG
**
22048756 CAGATAAGAGTTGCCAAAAAATGGG
65 CAGATAAGAGCAGCCAAAAAATGGG
* * * *
22048781 TGGATGAACCACCAATGTTGTAGGTTAATATGCTGTCAGATGGTTGTGAAAGCACAACATATTTG
1 TGGATGAACCACCAATGTTGCAGGTTAATACGCTGTCAGATGGTTGTGATA-CACAACATAATTG
* * **
22048846 CAGATAAAAGCTA-CCAAATAATCTG
65 CAGATAAGAGC-AGCCAAAAAATGGG
22048871 TGGATGAACCACCAGA-GTTGCAG
1 TGGATGAACCACCA-ATGTTGCAG
22048894 ATTATTAATC
Statistics
Matches: 171, Mismatches: 28, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
89 3 0.02
90 165 0.96
91 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (89 bp):
TGGATGAACCACCAATGTTGCAGGTTAATACGCTGTCAGATGGTTGTGATACACAACATAATTGC
AGATAAGAGCAGCCAAAAAATGGG
Found at i:22051617 original size:10 final size:10
Alignment explanation
Indices: 22051602--22051635 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
22051592 AACTAGCATC
22051602 TATATATACA
1 TATATATACA
22051612 TATATATACA
1 TATATATACA
* *
22051622 TGTATATATA
1 TATATATACA
22051632 TATA
1 TATA
22051636 GGCATCCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (10 bp):
TATATATACA
Found at i:22054221 original size:29 final size:29
Alignment explanation
Indices: 22054171--22054248 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
22054161 CCAAAACTAT
* * *
22054171 ACATTAACTATGGTTTAATGTGTAATTGTAC
1 ACATGAACTTTGGTTT--TGTGCAATTGTAC
* *
22054202 ACATGAACTTTGGTTTTGTGCAATTTTAT
1 ACATGAACTTTGGTTTTGTGCAATTGTAC
* *
22054231 ACATGAAATTTGGATTTG
1 ACATGAACTTTGGTTTTG
22054249 ATCAAATTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 26 0.65
31 14 0.35
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (29 bp):
ACATGAACTTTGGTTTTGTGCAATTGTAC
Found at i:22059944 original size:28 final size:28
Alignment explanation
Indices: 22059912--22059967 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
22059902 CTCTTCTGGA
22059912 GAAGGAAACAACAATACTTTTCATAAAC
1 GAAGGAAACAACAATACTTTTCATAAAC
22059940 GAAGGAAACAACAATACTTTTCATAAAC
1 GAAGGAAACAACAATACTTTTCATAAAC
22059968 TCTCTACAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.18, G:0.11, T:0.21
Consensus pattern (28 bp):
GAAGGAAACAACAATACTTTTCATAAAC
Found at i:22063299 original size:36 final size:36
Alignment explanation
Indices: 22063248--22063320 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
22063238 AAGAAGAACA
*
22063248 TCCCCAGAAATTAAACTTTGATGGGGCCTCAAACGC
1 TCCCCAGAAACTAAACTTTGATGGGGCCTCAAACGC
*
22063284 TCCCCAGAAACTAAACTTTGATGGGGCCTCCAACGC
1 TCCCCAGAAACTAAACTTTGATGGGGCCTCAAACGC
22063320 T
1 T
22063321 ATGGGTAACG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (36 bp):
TCCCCAGAAACTAAACTTTGATGGGGCCTCAAACGC
Found at i:22065215 original size:176 final size:176
Alignment explanation
Indices: 22064863--22065245 Score: 502
Period size: 176 Copynumber: 2.2 Consensus size: 176
22064853 GTGGTGAATT
* * *
22064863 TTATCTCTCTGAAGTCT-TAGTGGATCAGATTAAAGCCACGAATCTTATCTCCCTGAAGTTGTAA
1 TTATCTCCCTGAAGT-TGTAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTTGTAA
* * *
22064927 TGGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTTGAAGTGGAGCAGATTGGAGTTACAA
65 TGGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTTGAAGCGGAGCAGATTGAAGATACAA
* * * *
22064992 ATCTTATCTCCCTGAAGTTACAGTGGAATAGATTGGAGTTACAAATC
130 ATCTTATCTCCCTGAAGTTACAGTAGAACAGATTGAAGCTACAAATC
** * *
22065039 TTATCTCCCTGAAGTTGTAGTGGAGCAGATTTGAG-CACAAATCTTATCTCCGTGAAGTTGTAGT
1 TTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTTGTAAT
* * * **
22065103 GGAGCAGATTAAAGCCA-AAAGTTTTATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGATAGTG
66 GGAGCAGATTAAAGCCACAAA-TCTTATCTCCCTGAAGTTGAAGCGGAGCAGATTGAAGATA-CA
* * *
22065167 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
129 AATCTTATCTCCCTGAAGTTACAGTAGAACAGATTGAAGCTACAAATC
* *
22065215 TTATCTCCCTAAAGTTGCAGTGGAGCAGATT
1 TTATCTCCCTGAAGTTGTAGTGGAGCAGATT
22065246 GAAGATAGTG
Statistics
Matches: 180, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
174 3 0.02
175 78 0.43
176 99 0.55
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (176 bp):
TTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTTGTAAT
GGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTTGAAGCGGAGCAGATTGAAGATACAAA
TCTTATCTCCCTGAAGTTACAGTAGAACAGATTGAAGCTACAAATC
Found at i:22065246 original size:44 final size:44
Alignment explanation
Indices: 22064863--22065327 Score: 436
Period size: 44 Copynumber: 10.5 Consensus size: 44
22064853 GTGGTGAATT
* * * * * *
22064863 TTATCTCTCTGAAGTCT-TAGTGGATCAGATTAAAGCCACGAATC
1 TTATCTCCCTGAAGT-TGCAGTGGAGCAGATTGAAGCTACAAATC
* * * *
22064907 TTATCTCCCTGAAGTTGTAATGGAGCAGATTAAAGCCACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* * *
22064951 TTATCTCCCTGAAGTTGAAGTGGAGCAGATTGGAGTTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* ** * *
22064995 TTATCTCCCTGAAGTTACAGTGGAATAGATTGGAGTTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
*
22065039 TTATCTCCCTGAAGTTGTAGTGGAGCAGATTTG-AGC-ACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCTACAAATC
* * * * *
22065082 TTATCTCCGTGAAGTTGTAGTGGAGCAGATTAAAGCCA-AAAGTT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAA-TC
* * * **
22065126 TTATCTCCTTGAAGTTGCAGCGGAGCAGATTGAAGATAGTGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATC
* *
22065171 TTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
* * **
22065215 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGTGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATC
* * * * ** * **
22065260 CTATCTCTCTGAAGTTGCGGTTGAGTGGATTGAAACTACACTTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
*
22065304 CTATAC-CCCTGAAGTTGCAGTGGA
1 TTAT-CTCCCTGAAGTTGCAGTGGA
22065328 TTAGAACAAT
Statistics
Matches: 353, Mismatches: 59, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
42 2 0.01
43 42 0.12
44 236 0.67
45 71 0.20
46 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC
Found at i:22065291 original size:89 final size:88
Alignment explanation
Indices: 22064902--22065327 Score: 432
Period size: 89 Copynumber: 4.8 Consensus size: 88
22064892 TTAAAGCCAC
* * * * *
22064902 GAATCTTATCTCCCTGAAGTTGTAATGGAGCAGATTAAAGCCACAAATCTTATCTCCCTGAAGTT
1 GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTT
* * * *
22064967 GAAGTGGAGCAGATTGGAGTTAC
66 GCAGTGGAGCAGATTGAAGATAT
* * * ** * *
22064990 AAATCTTATCTCCCTGAAGTTACAGTGGAATAGATTGGAGTTACAAATCTTATCTCCCTGAAGTT
1 GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTT
* *
22065055 GTAGTGGAGCAGATTTG-AGCACA-
66 GCAGTGGAGCAGA-TTGAAG-ATAT
* * * * *
22065078 -AATCTTATCTC-CGTGAAGTTGTAGTGGAGCAGATTAAAGCCA-AAAGTTTTATCTCCTTGAAG
1 GAATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCTACAAA-TCTTATCTCCCTGAAG
*
22065140 TTGCAGCGGAGCAGATTGAAGATAGT
64 TTGCAGTGGAGCAGATTGAAGATA-T
* *
22065166 GAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTAAAGTT
1 GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTT
22065231 GCAGTGGAGCAGATTGAAGATAGT
66 GCAGTGGAGCAGATTGAAGATA-T
* * * ** * ** *
22065255 GAATCCTATCTCTCTGAAGTTGCGGTTGAGTGGATTGAAACTACACTTCCTATAC-CCCTGAAGT
1 GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTAT-CTCCCTGAAGT
22065319 TGCAGTGGA
65 TGCAGTGGA
22065328 TTAGAACAAT
Statistics
Matches: 283, Mismatches: 44, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
86 9 0.03
87 61 0.22
88 69 0.24
89 139 0.49
90 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (88 bp):
GAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTGAAGATAT
Found at i:22067228 original size:3 final size:3
Alignment explanation
Indices: 22067220--22067304 Score: 66
Period size: 3 Copynumber: 27.7 Consensus size: 3
22067210 TTTATGCACC
* * * *
22067220 ATT ATT ATT ATC ATT ATT -TT ATTT ATT -TAT ATT ATT AAT ATA ATA
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT AT-T ATT ATT ATT ATT ATT
* *
22067265 ATA ATT ATGCT ATG ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT AT--T ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
22067305 AAATTGATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
2 3 0.04
3 58 0.85
4 4 0.06
5 3 0.04
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:22068970 original size:19 final size:19
Alignment explanation
Indices: 22068946--22068991 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
22068936 AAGTATCTTT
*
22068946 TTTGCATT-CATTTCATGCA
1 TTTGCATTCCATTACAT-CA
22068965 TTTGCATTCCATTACATCA
1 TTTGCATTCCATTACATCA
*
22068984 TATGCATT
1 TTTGCATT
22068992 ACACACCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.46
Consensus pattern (19 bp):
TTTGCATTCCATTACATCA
Found at i:22071871 original size:21 final size:22
Alignment explanation
Indices: 22071833--22071881 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
22071823 ATGAAATGAA
*
22071833 AAAAAT-AAAAAAGTGAAAAGG
1 AAAAATGAAAAAAGTGAAAAAG
*
22071854 AAAAATGAAAAATG-GAAAAAG
1 AAAAATGAAAAAAGTGAAAAAG
*
22071875 TAAAATG
1 AAAAATG
22071882 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.12
Consensus pattern (22 bp):
AAAAATGAAAAAAGTGAAAAAG
Found at i:22071879 original size:14 final size:14
Alignment explanation
Indices: 22071840--22071883 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
22071830 GAAAAAAATA
22071840 AAAAAGTGAAAA-GG
1 AAAAAGT-AAAATGG
*
22071854 AAAAATGAAAAATGG
1 AAAAA-GTAAAATGG
22071869 AAAAAGTAAAATGG
1 AAAAAGTAAAATGG
22071883 A
1 A
22071884 GAGGCTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 18 0.69
15 8 0.31
ACGTcount: A:0.66, C:0.00, G:0.23, T:0.11
Consensus pattern (14 bp):
AAAAAGTAAAATGG
Found at i:22073564 original size:133 final size:133
Alignment explanation
Indices: 22073158--22074330 Score: 1183
Period size: 133 Copynumber: 8.8 Consensus size: 133
22073148 AGCAGGTTGA
* *
22073158 AAAGATAACAGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG--GATCTTGT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGA-AA-GCAGATCTTGT
** * * *
22073221 CTTCATGTATTGACATGAAGTAGATCAGAGATAGTGGATCTTGTCTTCCTGTACTGGCAGTGAAG
64 CTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACA-TGAAG
22073286 TAGATC
128 TAGATC
* * * * *
22073292 GAAGA-AAGCAGATCTTGTCTTCCTATACTGGTGGCGAAGTAGATCAAAGAAAGCAGATCTTATC
1 AAAGATAA-CAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTC
* * * * * *
22073356 TTCCCATACTAGT-A-GTGAAGTAGATC-GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGA
65 TT--CAT-GTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTATTGACATGA
22073418 AGTAGATC
126 AGTAGATC
* *
22073426 GAAGATAACAGATCTTGTCTTCCCGTACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * * *
22073491 TCATGTATT-AGCGTGAAGTAGATC-GAAGATAGCAAATCTTGTCTTCATGTATTGGCGTGAAGT
66 TCATGTATTGA-CATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTATTGACATGAAGT
22073554 AGATC
129 AGATC
*
22073559 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * * * *
22073624 TCATGTATTGGCGTGAAGTAGATC-GAAGATAGTAGATCTTGTATTCATTTATTGACATGAAGTA
66 TCATGTATTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTA
22073688 GATC
130 GATC
* * * * ** * *
22073692 AGAGATAAAATATCTTGTCTT--CAT-GTATTGACATGAAGTAAATC-AGAGATAATG--GATCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTG-GA-GAAGTAGATCGA-AGA-AA-GCAGATCT
* * * * * *
22073751 TGTCTTCATGTATTGACATAAAATAGATCAAAGATAGCAGATCTTGTCTTCTCATACTAGTG--G
61 TGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTC-T-TCAT-GTATTGACA
* *
22073814 TGAAATATATC
123 TGAAGTAGATC
* * * * * ** * *
22073825 GAATATAGCAGATCTTGTATT--CAT-GTATTGACATGAAGTAGATC-AGAGATAGCAGATCTTG
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTG-GA-GAAGTAGATCGA-AGAAAGCAGATCTTG
*** *
22073886 TCTTCATGTATTGACATGAAGTAGATCAGAGATAATGGATCTTGTCTTTATGTATTGACATGAAG
63 TCTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAG
22073951 TAGATC
128 TAGATC
* * * *
22073957 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAGTAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *
22074022 TCATGTATTGACATAAAGAAGATCAGAGATAGCAGATCTTGTCTTCATGTACTGACATGAAGTAG
66 TCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAG
22074087 ATC
131 ATC
* ** * ** * * *
22074090 AGAGATAATGGATCTTGTCTT--CAT-GTATTGACATGAAGTAGATCAAAGATAGCAGATCTTGT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTG-GA-GAAGTAGATCGAAGAAAGCAGATCTTGT
* ***
22074152 CTTCATGTATTGACATGATGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGT
64 CTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGT
22074217 AGATC
129 AGATC
* * * *
22074222 AAAGATAGCAAATTTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG--GATCTTGT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGA-AA-GCAGATCTTGT
22074285 CTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCT
64 CTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCT
22074331 ACCTGTACTA
Statistics
Matches: 877, Mismatches: 127, Indels: 71
0.82 0.12 0.07
Matches are distributed among these distances:
130 10 0.01
131 15 0.02
132 194 0.22
133 467 0.53
134 135 0.15
135 49 0.06
136 4 0.00
137 3 0.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (133 bp):
AAAGATAACAGATCTTGTCTTCCCATACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTCT
TCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAG
ATC
Found at i:22073650 original size:177 final size:175
Alignment explanation
Indices: 22073192--22074339 Score: 1201
Period size: 177 Copynumber: 6.5 Consensus size: 175
22073182 ATACTGGTGG
* * **
22073192 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGTG
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACA-GAAGTAGATCAAAGATAGCA
* *
22073257 GATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATACTG
65 GATCTTGTCTTCCTGTACTGGC-GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-T-
* * * * * * * *
22073322 GTGGC--GAAGTAGATCAAAGAAAGCAGATCTTATCTTCCCATACTAGT-A-G
127 -TGACATGAAGTAGATCAGAGATAGCAAATCTTGTCTT--CAT-GTATTGACA
* * * * *
22073371 TGAAGTAGATCGAAGA-AA-GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAA
1 TGAAGTAGATCAAAGATAATG--GATCTTGTCTTCATGTATTGAC-AGAAGTAGATCAAAGATAG
* * *
22073434 CAGATCTTGTCTTCCCGTACTGGTGGAGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
63 CAGATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* * *
22073499 T-AGCGTGAAGTAGATC-GAAGATAGCAAATCTTGTCTTCATGTATTGGCG
127 TGA-CATGAAGTAGATCAG-AGATAGCAAATCTTGTCTTCATGTATTGACA
** * ** * * *
22073548 TGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGC-GAAGTAGATCGAAGAAAG
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTT--CAT-GTATTGACAGAAGTAGATCAAAGATAG
* * * * * *
22073612 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGATCTTGTATTCATTTATT
63 CAGATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
22073677 GACATGAAGTAGATCAGAGATA-AAATATCTTGTCTTCATGTATTGACA
128 GACATGAAGTAGATCAGAGATAGCAA-ATCTTGTCTTCATGTATTGACA
* * * *
22073725 TGAAGTAAATCAGAGATAATGGATCTTGTCTTCATGTATTGACATAAAATAGATCAAAGATAGCA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACA-GAAGTAGATCAAAGATAGCA
* * * * * *
22073790 GATCTTGTCTT-CTCATACTAGTG-GTGAAATATATCGAATATAGCAGATCTTGTATTCATGTAT
65 GATCTTGTCTTCCT-GTACT-G-GCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
*
22073853 TGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACA
127 TGACATGAAGTAGATCAGAGATAGCAAATCTTGTCTTCATGTATTGACA
* *
22073902 TGAAGTAGATCAGAGATAATGGATCTTGTCTTTATGTATTGACATGAAGTAGATCAAAGATAGCA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACA-GAAGTAGATCAAAGATAGCA
** * * *
22073967 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCATGTATTG
65 GATCTTGTCTTCCTGTACTGG-CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
* * * *
22074032 ACATAAAGAAGATCAGAGATAGCAGATCTTGTCTTCATGTACTGACA
129 ACATGAAGTAGATCAGAGATAGCAAATCTTGTCTTCATGTATTGACA
*
22074079 TGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGCA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACA-GAAGTAGATCAAAGATAGCA
* * * * *
22074144 GATCTTGTCTTCATGTATTGACATGATGTAGATC-AGAGATAATG--GATCTTGTCTTCATGTAT
65 GATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGA-AGA-AA-GCAGATCTTGTCTTCATGTAT
* * *** * ***
22074206 TGACATGAAGTAGATCAAAGATAGCAAATTTTGTCTTCCCATACTGGTGG
127 TGACATGAAGTAGATCAGAGATAGCAAATCTTGTCTTCATGTA-TTGACA
* *
22074256 TGAAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
1 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACA-GAAGTAGATCAAAGATAGCA
*
22074321 GATCTTGTCTACCTGTACT
65 GATCTTGTCTTCCTGTACT
22074340 AGTAGCGAAG
Statistics
Matches: 834, Mismatches: 104, Indels: 64
0.83 0.10 0.06
Matches are distributed among these distances:
174 4 0.00
175 9 0.01
176 104 0.12
177 528 0.63
178 73 0.09
179 111 0.13
180 5 0.01
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (175 bp):
TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACAGAAGTAGATCAAAGATAGCAG
ATCTTGTCTTCCTGTACTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGAC
ATGAAGTAGATCAGAGATAGCAAATCTTGTCTTCATGTATTGACA
Found at i:22073947 original size:265 final size:265
Alignment explanation
Indices: 22073158--22074330 Score: 1167
Period size: 265 Copynumber: 4.4 Consensus size: 265
22073148 AGCAGGTTGA
* * *
22073158 AAAGATAACAGATATTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCT
1 AAAGATAAAATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCT
* * ** * * * *
22073223 TCATGTATTGACATGAAGTAGATCAGAGATAGTGGATCTTGTCTTCCTGTACTGGCAGTGAAGTA
66 TCATGTATTGACATAAAATAGATCAGAGATAGCAGATCTTGTCTTCATATACTGACA-TGAAATA
* * * * * *
22073288 GATC-GAAGA-AA-GCAGATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCAAAGAAAGCAG
130 GATCAG-AGATAATG--GATCTTGTATTCATGTA-T--TGACATGAAGTAGATCAGAGATAGCAG
* * * *
22073348 ATCTTATCTTCCCATACTAGT-A-GTGAAGTAGATC-GAAGA-AA-GCAGATCTTGTCTTCATGT
189 ATCTTGTCTT--CAT-GTATTGACATGAAGTAGATCAG-AGATAATG--GATCTTGTCTTCATGT
* *
22073408 ATTGGCGTGAAGTAGATC
248 ATTGACATGAAGTAGATC
* * * * *
22073426 GAAGATAACAGATCTTGTCTTCCCGTACTGGTGGAGAAGTAGATCGAAGA-AA-GCAGATCTTGT
1 AAAGATAAAATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATG--GATCTTGT
* * * * * * * *
22073489 CTTCATGTATT-AGCGTGAAGTAGATC-GAAGATAGCAAATCTTGTCTTCATGTATTGGCGTGAA
64 CTTCATGTATTGA-CATAAAATAGATCAG-AGATAGCAGATCTTGTCTTCATATACTGACATGAA
* * ** * * ** * *
22073552 GTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATC-GAAGAAAGCA
127 ATAGATCAGAGATAATGGATCTTGTATT--CAT-GTATTGACATGAAGTAGATCAG-AGATAGCA
* * * * * *
22073614 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-GAAGATAGTAGATCTTGTATTCATTTATTG
188 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAATGGATCTTGTCTTCATGTATTG
22073678 ACATGAAGTAGATC
252 ACATGAAGTAGATC
* *** * *** *
22073692 AGAGATAAAATATCTTGTCTTCATGTA-TTGACATGAAGTAAATC-AGAGATAATGGATCTTGTC
1 AAAGATAAAATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGA-AGATAATGGATCTTGTC
* ***
22073755 TTCATGTATTGACATAAAATAGATCAAAGATAGCAGATCTTGTCTTC-TCATACTAGTGGTGAAA
65 TTCATGTATTGACATAAAATAGATCAGAGATAGCAGATCTTGTCTTCAT-ATACT-GACATGAAA
*
22073819 TATATC-GA-AT-ATAGCAGATCTTGTATTCATGTATTGACATGAAGTAGATCAGAGATAGCAGA
128 TAGATCAGAGATAAT-G--GATCTTGTATTCATGTATTGACATGAAGTAGATCAGAGATAGCAGA
*
22073881 TCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAATGGATCTTGTCTTTATGTATTGACA
190 TCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACA
22073946 TGAAGTAGATC
255 TGAAGTAGATC
** * * *
22073957 AAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAGTAGATCTTGTCT
1 AAAGATAAAATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCT
* *
22074022 TCATGTATTGACATAAAGA-AGATCAGAGATAGCAGATCTTGTCTTCATGTACTGACATGAAGTA
66 TCATGTATTGACATAAA-ATAGATCAGAGATAGCAGATCTTGTCTTCATATACTGACATGAAATA
* *
22074086 GATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGCAGATCTTG
130 GATCAGAGATAATGGATCTTGTATTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTG
*
22074151 TCTTCATGTATTGACATGATGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAG
195 TCTTCATGTATTGACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAG
22074216 TAGATC
260 TAGATC
22074222 AAAGATAGCAAAT-T-TTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGT
1 AAAGATA--AAATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGT
* *
22074285 CTTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCT
64 CTTCATGTATTGACATAAAATAGATCAGAGATAGCAGATCTTGTCT
22074331 ACCTGTACTA
Statistics
Matches: 767, Mismatches: 99, Indels: 81
0.81 0.10 0.09
Matches are distributed among these distances:
263 5 0.01
264 10 0.01
265 400 0.52
266 173 0.23
267 70 0.09
268 106 0.14
269 2 0.00
270 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (265 bp):
AAAGATAAAATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCT
TCATGTATTGACATAAAATAGATCAGAGATAGCAGATCTTGTCTTCATATACTGACATGAAATAG
ATCAGAGATAATGGATCTTGTATTCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGT
CTTCATGTATTGACATGAAGTAGATCAGAGATAATGGATCTTGTCTTCATGTATTGACATGAAGT
AGATC
Found at i:22074325 original size:44 final size:44
Alignment explanation
Indices: 22073213--22074330 Score: 991
Period size: 44 Copynumber: 25.2 Consensus size: 44
22073203 GAAGATAATG
**
22073213 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGTG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* * * *
22073257 GATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATC-GAAGAAAGCA
1 GATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAG-AGATAGCA
* * * * *
22073302 GATCTTGTCTTCCTATACTGGTGGC--GAAGTAGATCAAAGAAAGCA
1 GATCTTGTCTTCATGTA-T--TGACATGAAGTAGATCAGAGATAGCA
* * * * *
22073347 GATCTTATCTTCCCATACTAGT-A-GTGAAGTAGATC-GAAGAAAGCA
1 GATCTTGTCTT--CAT-GTATTGACATGAAGTAGATCAG-AGATAGCA
* * *
22073392 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-GAAGATAACA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCA
** * *
22073436 GATCTTGTCTTCCCGTACTGGTG-GA-GAAGTAGATC-GAAGAAAGCA
1 GATCTTGTCTTCATGTA-T--TGACATGAAGTAGATCAG-AGATAGCA
*
22073481 GATCTTGTCTTCATGTATT-AGCGTGAAGTAGATC-GAAGATAGCA
1 GATCTTGTCTTCATGTATTGA-CATGAAGTAGATCAG-AGATAGCA
* * * * *
22073525 AATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* ** * *
22073569 GATCTTGTCTTCCCATACTGGTGGC--GAAGTAGATC-GAAGAAAGCA
1 GATCTTGTCTT--CAT-GTATTGACATGAAGTAGATCAG-AGATAGCA
* * *
22073614 GATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-GAAGATAGTA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGATAGCA
* * **
22073658 GATCTTGTATTCATTTATTGACATGAAGTAGATCAGAGATAAAA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* * ***
22073702 TATCTTGTCTTCATGTATTGACATGAAGTAAATCAGAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* * *
22073746 GATCTTGTCTTCATGTATTGACATAAAATAGATCAAAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* * * * * *
22073790 GATCTTGTCTTCTCATACTAGTG--GTGAAATATATC-GAATATAGCA
1 GATCTTGTC-T-TCAT-GTATTGACATGAAGTAGATCAG-AGATAGCA
*
22073835 GATCTTGTATTCATGTATTGACATGAAGTAGATCAGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
***
22073879 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* *
22073923 GATCTTGTCTTTATGTATTGACATGAAGTAGATCAAAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
*** * *** *
22073967 GATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGATAGTA
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAG-AGATAGCA
* *
22074012 GATCTTGTCTTCATGTATTGACATAAAGAAGATCAGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* ***
22074056 GATCTTGTCTTCATGTACTGACATGAAGTAGATCAGAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
*
22074100 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* ***
22074144 GATCTTGTCTTCATGTATTGACATGATGTAGATCAGAGATAATG
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
*
22074188 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
* * *** * *** ***
22074232 AATTTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGATAATG
1 GATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAG-AGATAGCA
22074277 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
1 GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
22074321 GATCTTGTCT
1 GATCTTGTCT
22074331 ACCTGTACTA
Statistics
Matches: 875, Mismatches: 157, Indels: 84
0.78 0.14 0.08
Matches are distributed among these distances:
42 13 0.01
43 10 0.01
44 583 0.67
45 243 0.28
46 7 0.01
47 13 0.01
48 6 0.01
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32
Consensus pattern (44 bp):
GATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGATAGCA
Found at i:22074857 original size:22 final size:21
Alignment explanation
Indices: 22074832--22074872 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
22074822 AACAAACGCA
* *
22074832 AACAATACAACGAAGAAAAAGG
1 AACAAAACAAC-AACAAAAAGG
22074854 AACAAAACAACAACAAAAA
1 AACAAAACAACAACAAAAA
22074873 ACAAAATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.71, C:0.17, G:0.10, T:0.02
Consensus pattern (21 bp):
AACAAAACAACAACAAAAAGG
Found at i:22080140 original size:23 final size:24
Alignment explanation
Indices: 22080113--22080165 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 24
22080103 AAAAATAATT
* * *
22080113 TTAATTATTTTTATTTTTTAAAAA
1 TTAATTATTTTAAATTTTAAAAAA
22080137 -TAATT-TTTTAAATTTTAAAAAA
1 TTAATTATTTTAAATTTTAAAAAA
22080159 TTAATTA
1 TTAATTA
22080166 AATGCTTACG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTAATTATTTTAAATTTTAAAAAA
Found at i:22084542 original size:21 final size:20
Alignment explanation
Indices: 22084511--22084553 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
22084501 TATACTTTTT
* *
22084511 AATAATTTTTAATTTTTTAA
1 AATAATTTTTAAATTTTAAA
22084531 AATAACTTTTTAAATTTTAAA
1 AATAA-TTTTTAAATTTTAAA
22084552 AA
1 AA
22084554 ATTAATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
AATAATTTTTAAATTTTAAA
Found at i:22084548 original size:20 final size:20
Alignment explanation
Indices: 22084511--22084556 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
22084501 TATACTTTTT
*
22084511 AATAATTTTTAATTTTTTAA
1 AATAATTTTTAATATTTTAA
22084531 AATAACTTTTTAA-ATTTTAA
1 AATAA-TTTTTAATATTTTAA
22084551 AA-AATT
1 AATAATT
22084557 AATTAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
20 13 0.54
21 7 0.29
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
AATAATTTTTAATATTTTAA
Found at i:22084554 original size:22 final size:20
Alignment explanation
Indices: 22084511--22084560 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
22084501 TATACTTTTT
**
22084511 AATAATTTTTAATTTTTTAA
1 AATAATTTTTAATTTTAAAA
22084531 AATAACTTTTTAAATTTTAAAA
1 AATAA-TTTTT-AATTTTAAAA
22084553 AATTAATT
1 AA-TAATT
22084561 AATTGTTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 5 0.20
21 5 0.20
22 12 0.48
23 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
AATAATTTTTAATTTTAAAA
Found at i:22086383 original size:22 final size:24
Alignment explanation
Indices: 22086326--22086390 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 24
22086316 GGAAGGTAAA
*
22086326 AAAGAAAGAAAAAGAGATTAGTAGAG
1 AAAGAAAGAAAAAG-GA-TAATAGAG
22086352 AAAGTAAAAGAAAAAGGA-AAT-GAG
1 AAAG--AAAGAAAAAGGATAATAGAG
*
22086376 AAAGAAAGTAAAAGG
1 AAAGAAAGAAAAAGG
22086391 GGAAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
22 10 0.29
24 7 0.20
25 2 0.06
26 4 0.11
27 2 0.06
28 10 0.29
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (24 bp):
AAAGAAAGAAAAAGGATAATAGAG
Found at i:22087935 original size:10 final size:10
Alignment explanation
Indices: 22087929--22087994 Score: 52
Period size: 10 Copynumber: 6.8 Consensus size: 10
22087919 CACATATTTA
22087929 TATATATATT
1 TATATATATT
22087939 TATAT-TATT
1 TATATATATT
22087948 T-T-TAT-TT
1 TATATATATT
*
22087955 TCATA-ATTTT
1 T-ATATATATT
22087965 TATATATATT
1 TATATATATT
*
22087975 TATATGCATATA
1 TATAT--ATATT
22087987 TATATATA
1 TATATATA
22087995 CATACGTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
7 4 0.09
8 2 0.04
9 11 0.24
10 20 0.43
12 9 0.20
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (10 bp):
TATATATATT
Found at i:22093251 original size:7 final size:7
Alignment explanation
Indices: 22093239--22093297 Score: 57
Period size: 7 Copynumber: 8.0 Consensus size: 7
22093229 AAAATTGTTA
22093239 AAAAAAG
1 AAAAAAG
22093246 AAAAAAG
1 AAAAAAG
22093253 AAAAAAAG
1 -AAAAAAG
22093261 AAGGAAAAAG
1 -A--AAAAAG
*
22093271 AAAGAAG
1 AAAAAAG
22093278 -AAAAAG
1 AAAAAAG
22093284 AAAAAAG
1 AAAAAAG
*
22093291 AGAAAAG
1 AAAAAAG
22093298 GAGAGGCCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
6 5 0.11
7 24 0.53
8 9 0.20
9 1 0.02
10 6 0.13
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:22093256 original size:13 final size:13
Alignment explanation
Indices: 22093240--22093297 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
22093230 AAATTGTTAA
22093240 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
* *
22093253 AAAAA-AAGAAGG
1 AAAAAGAAAAAAG
*
22093265 AAAAAGAAAGAAG
1 AAAAAGAAAAAAG
22093278 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
22093291 AGAAAAG
1 A-AAAAG
22093298 GAGAGGCCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
12 10 0.27
13 22 0.59
14 5 0.14
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:22093911 original size:312 final size:312
Alignment explanation
Indices: 22093346--22094281 Score: 1739
Period size: 312 Copynumber: 3.0 Consensus size: 312
22093336 ACTAAAGGGG
22093346 ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
1 ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
*
22093411 AGCAGCTCAAATTTTGATCAGATAGGGGCATGTGTTGGCATTGCTATACCTAAATCAACAAGAAA
66 AGCAGCTCAAATTTTGATCAGATAGGGGCATGTGTTGGCATTGCTATACCTAAATCAACAGGAAA
* *
22093476 GGGTAGGCGACATCTTAGGGCATCGACAAAGTCCTGTAGATCTTCTAAACACATGTCAAACTCAG
131 GGGTAGGCGACATCTTGGGGCATCGACAAAGTCCTGTAGATCTCCTAAACACATGTCAAACTCAG
* *
22093541 AATGATCTTCAGAAAGTTTGCACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
196 AATGGTCTTCAGAAAGTTTGTACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
22093606 ACTATTTATATTGAATTTTTTGCTCTTGGAATACTTCATTCTTTTTCAAGAT
261 ACTATTTATATTGAATTTTTTGCTCTTGGAATACTTCATTCTTTTTCAAGAT
22093658 ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
1 ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
* **
22093723 AGCAGCTCAAATTTTGATCAGATAGGGGCATATGTTGAAATTGCTATACCTAAATCAACAGGAAA
66 AGCAGCTCAAATTTTGATCAGATAGGGGCATGTGTTGGCATTGCTATACCTAAATCAACAGGAAA
22093788 GGGTAGGCGACATCTTGGGGCATCGACAAAGTCCTGTAGATCTCCTAAACACATGTCAAACTCAG
131 GGGTAGGCGACATCTTGGGGCATCGACAAAGTCCTGTAGATCTCCTAAACACATGTCAAACTCAG
22093853 AATGGTCTTCAGAAAGTTTGTACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
196 AATGGTCTTCAGAAAGTTTGTACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
22093918 ACTATTTATATTGAATTTTTTGCTCTTGGAATACTTCATTC-TTTTCAAGAT
261 ACTATTTATATTGAATTTTTTGCTCTTGGAATACTTCATTCTTTTTCAAGAT
22093969 ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
1 ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
*
22094034 AGCAGCTCAAATTTTGATCAGATAGGGGCATGTGTTGGCATTGCTATACCTAAATCAACAGAAAA
66 AGCAGCTCAAATTTTGATCAGATAGGGGCATGTGTTGGCATTGCTATACCTAAATCAACAGGAAA
* *
22094099 TGTTAGGCGACATCTTGGGGCATCGACAAAGTCCTGTAGATCTCCTAAACACATGTCAAACTCAG
131 GGGTAGGCGACATCTTGGGGCATCGACAAAGTCCTGTAGATCTCCTAAACACATGTCAAACTCAG
*
22094164 AATGGTCTTCAGAAAATTTGTACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
196 AATGGTCTTCAGAAAGTTTGTACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
* *
22094229 ACTATTTATATTAAATTTTTTGCTCTTAGAATACTTCATTCTTTTTCAAGAT
261 ACTATTTATATTGAATTTTTTGCTCTTGGAATACTTCATTCTTTTTCAAGAT
22094281 A
1 A
22094282 CGTGTTCCCA
Statistics
Matches: 606, Mismatches: 17, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
311 302 0.50
312 304 0.50
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (312 bp):
ATTTGAGTTGAAAACCTGAAAAGGGCGGCTCAAATTTTGATCAGAATGGGACATGAGCTGATCAG
AGCAGCTCAAATTTTGATCAGATAGGGGCATGTGTTGGCATTGCTATACCTAAATCAACAGGAAA
GGGTAGGCGACATCTTGGGGCATCGACAAAGTCCTGTAGATCTCCTAAACACATGTCAAACTCAG
AATGGTCTTCAGAAAGTTTGTACAGAGAAGTTCAAGCTGCGATATCTGGGGCATCTAGTCCTCAT
ACTATTTATATTGAATTTTTTGCTCTTGGAATACTTCATTCTTTTTCAAGAT
Found at i:22095184 original size:46 final size:46
Alignment explanation
Indices: 22095117--22095464 Score: 525
Period size: 46 Copynumber: 7.5 Consensus size: 46
22095107 CAGATCAATG
* * * *
22095117 AGATAGCAGATCTTGTCTTCCTTTATTTGGCAGTGGAGTAAATTGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
* *
22095163 AGATAGCAGATCTTGTCTTCCTCTATTTGGCAGTGGAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
* * *
22095209 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGGTTGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
*
22095255 ATATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
* * *
22095301 AGATAGGAGATCTTGTCTTCCTGTATTTGGTAGCGGGGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
* * *
22095347 AGATAGCAGATCCTGTCTTCCTATATTTGGCAGCAGAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
* *
22095393 AGATAACAGATCTTGTCTTCCTGTATTTGGGCAGCGGAGTAGATTGA
1 AGATAGCAGATCTTGTCTTCCTGTATTT-GGCAGCGGAGTAGATCGA
22095440 AGATAGCAGATCTTGTCTTCCTGTA
1 AGATAGCAGATCTTGTCTTCCTGTA
22095465 CTGGCAGTGA
Statistics
Matches: 273, Mismatches: 28, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
46 233 0.85
47 40 0.15
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (46 bp):
AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGA
Found at i:22095649 original size:132 final size:132
Alignment explanation
Indices: 22095499--22095929 Score: 718
Period size: 132 Copynumber: 3.3 Consensus size: 132
22095489 CAACGAACCT
* *
22095499 TATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCCCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCATATTCTGTCCCCCTAAGCAGTAGTGG
* * *
22095564 AGCAAATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAACAAATTTAAGCCATTAGT
66 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
22095629 CC
131 CC
* * * *
22095631 TATCTTCCTAAACAGTAGTGGAGTAGGTCGAAGATTGCATATTTTGTCCCCCTAAGTAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCATATTCTGTCCCCCTAAGCAGTAGTGG
* * *
22095696 AGCAGATCGAAGATGGTGAATTTTATCTTCCCAAGATAATGGAGAAGCAGATTTGAGCCATTAGT
66 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
22095761 CC
131 CC
*
22095763 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCATATTCTGTCCCTCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCATATTCTGTCCCCCTAAGCAGTAGTGG
22095828 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
66 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
22095893 CC
131 CC
* * *
22095895 TGTCTCCCTAAGCAGTAGTGGAGTAGATAGAAGAT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
22095930 GGTGAATCTT
Statistics
Matches: 276, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 276 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCATATTCTGTCCCCCTAAGCAGTAGTGG
AGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
CC
Found at i:22095857 original size:220 final size:219
Alignment explanation
Indices: 22095675--22096087 Score: 641
Period size: 220 Copynumber: 1.9 Consensus size: 219
22095665 TTGCATATTT
* * *
22095675 TGTCCCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATTTTATCTTCCCAAGATAATGGAG
1 TGTCCCCCTAAGCAGTAGTGGAGCAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAATGGAG
* * *
22095740 AAGCAGATTTGAGCCA-TTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGATTGCATA
66 AAGCAGATTTAAGCCATTTA-TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGA
* *
22095804 TTCTGTC-CCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
130 TTCTGTCTCC-CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAACATAGT
22095868 GGAGAAGCAGATTTAAGCCATTAGTCC
194 GGAGAAGCAGATTT-AGCCATTAGTCC
* * *
22095895 TGTCTCCCTAAGCAGTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAG
1 TGTCCCCCTAAGCAGTAGTGGAGCAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAATGGAG
* * *
22095960 AAGCAGGTTTAAGCCATTTATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGTTTGCAGAT
66 AAGCAGATTTAAGCCATTTATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGAT
* *
22096025 TCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
131 TCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAACATAGT
22096088 AGGGAAGTAA
Statistics
Matches: 179, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
220 174 0.97
221 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (219 bp):
TGTCCCCCTAAGCAGTAGTGGAGCAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAATGGAG
AAGCAGATTTAAGCCATTTATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGATTGCAGAT
TCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAACATAGTGG
AGAAGCAGATTTAGCCATTAGTCC
Found at i:22095959 original size:42 final size:42
Alignment explanation
Indices: 22095822--22095959 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 42
22095812 CTCTAAGCAG
*
22095822 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
1 TAGTGGAGCAGATAGAAGATGGTGAATCTTATCTTCCCAAGA
** * * *
22095864 TAGTGGAGAAGCAGATTTAAGCCAT--T-AGTCCTGTC-TCCCTAAGCA
1 TAGT-G-G-AGCAGATAGAAG--ATGGTGAATCTTATCTTCCC-AAG-A
*
22095909 GTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGA
1 -TAGTGGAGCAGATAGAAGATGGTGAATCTTATCTTCCCAAGA
22095952 TAGTGGAG
1 TAGTGGAG
22095960 AAGCAGGTTT
Statistics
Matches: 73, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
41 2 0.03
42 12 0.16
43 16 0.22
44 20 0.27
45 17 0.23
46 4 0.05
47 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (42 bp):
TAGTGGAGCAGATAGAAGATGGTGAATCTTATCTTCCCAAGA
Found at i:22095987 original size:132 final size:129
Alignment explanation
Indices: 22095501--22096087 Score: 466
Period size: 132 Copynumber: 4.5 Consensus size: 129
22095491 ACGAACCTTA
* * ** * * *
22095501 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-CCCCTAAGCAGTAGTGG
1 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-TGGTGAATCTTATCTTCCC-AAG-A-TAGTGG
* * * *
22095564 AGCAAATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAACAAATTTAAGCCATTAGT
62 AGCAGATCGAAGAT-GTGAATCCTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
*
22095629 CCTA
126 CCTG
* * * * * *
22095633 TCTTCCTAAACAGTAGTGGAGTAGGTCGAAGAT--TGCATATTTTGTC-CCCCTAAGTAGTAGTG
1 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTG-A-ATCTTATCTTCCC-AAG-A-TAGTG
** * *
22095695 GAGCAGATCGAAGATGGTGAATTTTATCTTCCCAAGATAATGGAGAAGCAGATTTGAGCCATTAG
61 GAGCAGATCGAAGAT-GTGAATCCTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAG
*
22095760 TCCTA
125 TCCTG
* * * * * *
22095765 TCTCCCTAAGCAGTAGTGGAGTAGGTCGAAGAT--TGCATATTCTGTCCCTCTAAGCAGTAGTGG
1 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCC-C-AAG-A-TAGTGG
*
22095828 AGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
62 AGCAGATCGAAGAT-GTGAATCCTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGT
22095893 CCTG
126 CCTG
*
22095897 TCTCCCTAAGCAGTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAA
1 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT-G-G-A
* ** * * * *
22095962 GCAGGTTTAAGCCAT-T-TATCCTATC-TCCCTAAGCAGTAGTGGAGTAG--G-TTAAAG--TTT
63 GCAGATCGAAG--ATGTGAATCCTATCTTCCC-AAG-A-TAGTGGAGAAGCAGATTTAAGCCATT
*
22096019 GCAGATTCTG
123 --AG-TCCTG
*
22096029 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
1 TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGT
22096088 AGGGAAGTAA
Statistics
Matches: 395, Mismatches: 42, Indels: 36
0.84 0.09 0.08
Matches are distributed among these distances:
129 3 0.01
130 10 0.03
131 18 0.05
132 330 0.84
133 12 0.03
134 20 0.05
135 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (129 bp):
TCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGCA
GATCGAAGATGTGAATCCTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTG
Found at i:22096005 original size:46 final size:45
Alignment explanation
Indices: 22095864--22096005 Score: 111
Period size: 44 Copynumber: 3.2 Consensus size: 45
22095854 CTTCCCAAGA
*
22095864 TAGTGGAGAAGCAGATTTAAGCCA-TTAGTCCTGTCTCCCTAAGCAG
1 TAGTGGAGAAGCAG-TTTAAGCCATTTA-TCCTATCTCCCTAAGCAG
* ** * *
22095910 TAGTGGAGTAG-A-TAGAAG--ATGGTGAATCTTATCTTCCC-AAG-A-
1 TAGTGGAGAAGCAGTTTAAGCCAT--T-TATCCTATC-TCCCTAAGCAG
22095952 TAGTGGAGAAGCAGGTTTAAGCCATTTATCCTATCTCCCTAAGCAG
1 TAGTGGAGAAGCA-GTTTAAGCCATTTATCCTATCTCCCTAAGCAG
22095998 TAGTGGAG
1 TAGTGGAG
22096006 TAGGTTAAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 26
0.66 0.10 0.24
Matches are distributed among these distances:
41 1 0.01
42 10 0.14
43 10 0.14
44 19 0.26
45 12 0.17
46 18 0.25
47 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
TAGTGGAGAAGCAGTTTAAGCCATTTATCCTATCTCCCTAAGCAG
Found at i:22096006 original size:88 final size:88
Alignment explanation
Indices: 22095814--22096008 Score: 338
Period size: 88 Copynumber: 2.2 Consensus size: 88
22095804 TTCTGTCCCT
* *
22095814 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGA
1 CTAAGCAGTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGA
*
22095879 TTTAAGCCATTAGTCCTGTCTCC
66 TTTAAGCCATTAGTCCTATCTCC
*
22095902 CTAAGCAGTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGG
1 CTAAGCAGTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGA
22095967 TTTAAGCCATTTA-TCCTATCTCC
66 TTTAAGCCA-TTAGTCCTATCTCC
22095990 CTAAGCAGTAGTGGAGTAG
1 CTAAGCAGTAGTGGAGTAG
22096009 GTTAAAGTTT
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
88 99 0.97
89 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (88 bp):
CTAAGCAGTAGTGGAGTAGATAGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGA
TTTAAGCCATTAGTCCTATCTCC
Found at i:22096395 original size:21 final size:20
Alignment explanation
Indices: 22096361--22096404 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
22096351 TGCCCACCCC
*
22096361 AAAACCCATTACAAACTAAAAA
1 AAAACCCATAAC-AAC-AAAAA
22096383 AAAACCCA-AACAACAAAAA
1 AAAACCCATAACAACAAAAA
22096402 AAA
1 AAA
22096405 CCAGCCTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 8 0.38
20 3 0.14
21 2 0.10
22 8 0.38
ACGTcount: A:0.70, C:0.23, G:0.00, T:0.07
Consensus pattern (20 bp):
AAAACCCATAACAACAAAAA
Found at i:22098189 original size:25 final size:24
Alignment explanation
Indices: 22098152--22098252 Score: 100
Period size: 25 Copynumber: 4.2 Consensus size: 24
22098142 TTTATTGTAT
22098152 TTTTTAATGTATTATATTAATGTG
1 TTTTTAATGTATTATATTAATGTG
* *
22098176 TTTTGGTAAT-TATTGTAATT-ATAT-
1 TTTT--TAATGTATTAT-ATTAATGTG
* *
22098200 TATTTAATGTATTATATTAATGTA
1 TTTTTAATGTATTATATTAATGTG
*
22098224 TTATTTAATGTATAATATTAATGTG
1 TT-TTTAATGTATTATATTAATGTG
22098249 TTTT
1 TTTT
22098253 GGTAATTATT
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
22 7 0.11
23 8 0.13
24 10 0.16
25 30 0.48
26 7 0.11
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (24 bp):
TTTTTAATGTATTATATTAATGTG
Found at i:22098236 original size:73 final size:75
Alignment explanation
Indices: 22098123--22098263 Score: 223
Period size: 73 Copynumber: 1.9 Consensus size: 75
22098113 TATTTTTGTA
* * * *
22098123 ATTATATTATTGTACTATATTTATTGTATTTTTTAATGTATTATATTAATGTGTTTTGGTAATTA
1 ATTATATTAATGTACTATATTTAATGTATTATTTAATGTATAATATTAATGTGTTTTGGTAATTA
22098188 TTGTAATTAT
66 TTGTAATTAT
*
22098198 ATTAT-TTAATGTATTATA-TTAATGTATTATTTAATGTATAATATTAATGTGTTTTGGTAATTA
1 ATTATATTAATGTACTATATTTAATGTATTATTTAATGTATAATATTAATGTGTTTTGGTAATTA
22098261 TTG
66 TTG
22098264 CAACAACCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 45 0.74
74 11 0.18
75 5 0.08
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (75 bp):
ATTATATTAATGTACTATATTTAATGTATTATTTAATGTATAATATTAATGTGTTTTGGTAATTA
TTGTAATTAT
Found at i:22113254 original size:2 final size:2
Alignment explanation
Indices: 22113235--22113271 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
22113225 AATTACACAA
* *
22113235 TC TC TT TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
22113272 TCTTTTATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (2 bp):
TC
Found at i:22115959 original size:16 final size:17
Alignment explanation
Indices: 22115939--22115986 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
22115929 AAATAATATT
22115939 TATATTTTTTTATTTTA
1 TATATTTTTTTATTTTA
** *
22115956 -ATATTTAATAATTTTA
1 TATATTTTTTTATTTTA
*
22115972 TACATTTTTTTATTT
1 TATATTTTTTTATTT
22115987 ATTGAAAATT
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTTTTTATTTTA
Found at i:22127945 original size:35 final size:35
Alignment explanation
Indices: 22127906--22128032 Score: 148
Period size: 35 Copynumber: 3.6 Consensus size: 35
22127896 ATGGTGTCGT
* * **
22127906 TCCATAGAGCCAGTAGATCATCT-CTGTGATGCCAC
1 TCCATAAAGCCAGTAGACCAT-TACCATGATGCCAC
* * *
22127941 TCCATAGAGCCAGTAGACCATTACCATAATGCTAC
1 TCCATAAAGCCAGTAGACCATTACCATGATGCCAC
* *
22127976 TCTATAAAGCCAGTAGACCATTGCCATGATGCCAC
1 TCCATAAAGCCAGTAGACCATTACCATGATGCCAC
*
22128011 TCCATAAAGCTAGTAGACCATT
1 TCCATAAAGCCAGTAGACCATT
22128033 TATCTAACCA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
34 1 0.01
35 78 0.99
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (35 bp):
TCCATAAAGCCAGTAGACCATTACCATGATGCCAC
Found at i:22129354 original size:25 final size:24
Alignment explanation
Indices: 22129318--22129404 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 24
22129308 TTTAGACGTT
*
22129318 AGACACAA-TTAATGTGTCTGAACTA
1 AGAC-CAATTTAAT-TGTCTAAACTA
*
22129343 AGACCAATTTAATTTGTCAAAACTA
1 AGACCAATTTAA-TTGTCTAAACTA
*
22129368 AGTCCAATTTAATTCGTCTAAACTA
1 AGACCAATTTAATT-GTCTAAACTA
22129393 AGACCAATTTAA
1 AGACCAATTTAA
22129405 ATAATATATT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
24 5 0.09
25 48 0.89
26 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (24 bp):
AGACCAATTTAATTGTCTAAACTA
Found at i:22134177 original size:25 final size:24
Alignment explanation
Indices: 22134155--22134227 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 24
22134145 ACAATTAAGG
*
22134155 TGTCTGAACTAAGACCAATTTAATT
1 TGTCTAAACTAAGACCAATTTAA-T
* ***
22134180 TGTCAAAACTAATTTCAATTTAAT
1 TGTCTAAACTAAGACCAATTTAAT
22134204 TCGTCTAAACTAAGACCAATTTAA
1 T-GTCTAAACTAAGACCAATTTAA
22134228 ATCATATATT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (24 bp):
TGTCTAAACTAAGACCAATTTAAT
Found at i:22142635 original size:21 final size:21
Alignment explanation
Indices: 22142606--22142650 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
22142596 TTGGTCAAGG
22142606 AAAAAAAAAGAAA-AATAAAAT
1 AAAAAAAAAGAAAGAA-AAAAT
*
22142627 AAAAGAAAAGAAAGAAAAAAT
1 AAAAAAAAAGAAAGAAAAAAT
22142648 AAA
1 AAA
22142651 TATTTCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (21 bp):
AAAAAAAAAGAAAGAAAAAAT
Found at i:22143852 original size:3 final size:3
Alignment explanation
Indices: 22143846--22143886 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
22143836 AAAATAGTTT
22143846 AGA AGA AG- AGA AGA AG- AGA AGA AG- AGA AGA AG- AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
22143887 GAATGGAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 8 0.24
3 26 0.76
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:22143857 original size:8 final size:8
Alignment explanation
Indices: 22143846--22143889 Score: 88
Period size: 8 Copynumber: 5.5 Consensus size: 8
22143836 AAAATAGTTT
22143846 AGAAGAAG
1 AGAAGAAG
22143854 AGAAGAAG
1 AGAAGAAG
22143862 AGAAGAAG
1 AGAAGAAG
22143870 AGAAGAAG
1 AGAAGAAG
22143878 AGAAGAAG
1 AGAAGAAG
22143886 AGAA
1 AGAA
22143890 TGGAAGGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (8 bp):
AGAAGAAG
Found at i:22144002 original size:17 final size:17
Alignment explanation
Indices: 22143972--22144023 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
22143962 AAAAAAATAG
*
22143972 AAGA-AAAGGAAAGGAA
1 AAGAGAAAGGGAAGGAA
*
22143988 ATGAGAAAGGGAAGGAA
1 AAGAGAAAGGGAAGGAA
* *
22144005 AAGAGAATGGGAAAGAA
1 AAGAGAAAGGGAAGGAA
22144022 AA
1 AA
22144024 AGGGATTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 3 0.10
17 27 0.90
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.04
Consensus pattern (17 bp):
AAGAGAAAGGGAAGGAA
Found at i:22144013 original size:23 final size:22
Alignment explanation
Indices: 22143956--22144019 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
22143946 AGGAGAATGA
* *
22143956 GAAGGAAAAAAAAT-AG-AAGA
1 GAAGGAAAAGAAATGAGAAAGG
* *
22143976 AAAGGAAAGGAAATGAGAAAGG
1 GAAGGAAAAGAAATGAGAAAGG
*
22143998 GAAGGAAAAGAGAATGGGAAAG
1 GAAGGAAAAGA-AATGAGAAAG
22144020 AAAAAGGGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
20 11 0.32
21 2 0.06
22 12 0.35
23 9 0.26
ACGTcount: A:0.61, C:0.00, G:0.34, T:0.05
Consensus pattern (22 bp):
GAAGGAAAAGAAATGAGAAAGG
Found at i:22146932 original size:48 final size:48
Alignment explanation
Indices: 22146861--22146969 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
22146851 CTTTGTATTT
* **
22146861 ATTT-AATTGAGATTTATTACAACATTAAAACTTGGAACAAACTTTGTA
1 ATTTAAATT-AGATTAATTACAACATTAAAACGAGGAACAAACTTTGTA
*
22146909 ATTTAAATTAGATTAATTGCAACATTAAAACGAGGAACAAACTTTGTA
1 ATTTAAATTAGATTAATTACAACATTAAAACGAGGAACAAACTTTGTA
*
22146957 ATATAAATTAGAT
1 ATTTAAATTAGAT
22146970 ACATTAGAGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 51 0.93
49 4 0.07
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (48 bp):
ATTTAAATTAGATTAATTACAACATTAAAACGAGGAACAAACTTTGTA
Found at i:22150073 original size:3 final size:3
Alignment explanation
Indices: 22149992--22150057 Score: 114
Period size: 3 Copynumber: 22.0 Consensus size: 3
22149982 TTCTGATTGT
22149992 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
22150040 TTG TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
22150058 CAGCTTTGTA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:22153204 original size:21 final size:21
Alignment explanation
Indices: 22153180--22153219 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22153170 AGAATTGCCA
*
22153180 AAATAGTTTGAAGAGAAATGG
1 AAATAGATTGAAGAGAAATGG
*
22153201 AAATGGATTGAAGAGAAAT
1 AAATAGATTGAAGAGAAAT
22153220 TTAGGGCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATAGATTGAAGAGAAATGG
Found at i:22155336 original size:20 final size:17
Alignment explanation
Indices: 22155303--22155409 Score: 62
Period size: 18 Copynumber: 6.0 Consensus size: 17
22155293 CAGATTCAAT
22155303 AAAAAATCAAAATATAAA
1 AAAAAATCAAAATA-AAA
22155321 AAAAAATCAATCAATAAAA
1 AAAAAATCAA--AATAAAA
22155340 AAATAAAT-AAAA-AAATGA
1 AAA-AAATCAAAATAAA--A
* *
22155358 AAATAAA-AAAAAGAAATA
1 AAA-AAATCAAAATAAA-A
*
22155376 AAAAAA-GAAAA-AAAGA
1 AAAAAATCAAAATAAA-A
22155392 AAAAAATCAAAATCAAAA
1 AAAAAATCAAAAT-AAAA
22155410 TGAAAAAAGA
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
16 13 0.17
17 13 0.17
18 27 0.36
19 14 0.19
20 8 0.11
ACGTcount: A:0.79, C:0.05, G:0.04, T:0.12
Consensus pattern (17 bp):
AAAAAATCAAAATAAAA
Found at i:22155343 original size:28 final size:26
Alignment explanation
Indices: 22155311--22155417 Score: 82
Period size: 27 Copynumber: 4.2 Consensus size: 26
22155301 ATAAAAAATC
22155311 AAAATATAA-AAAAAAATCAATCAATAAA
1 AAAATA-AATAAAAAAATCAA--AATAAA
*
22155339 AAAATAAATAAAAAAATGAAAATAAAA
1 AAAATAAATAAAAAAATCAAAAT-AAA
* *
22155366 AAAAGAAATAAAAAAA-GAAAA-AAA
1 AAAATAAATAAAAAAATCAAAATAAA
* *
22155390 GAAAA-AAAT--CAAAATCAAAATGAA
1 -AAAATAAATAAAAAAATCAAAATAAA
22155414 AAAA
1 AAAA
22155418 GAAAAAGAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
22 4 0.06
23 8 0.12
24 9 0.13
25 4 0.06
26 8 0.12
27 20 0.29
28 16 0.23
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.12
Consensus pattern (26 bp):
AAAATAAATAAAAAAATCAAAATAAA
Found at i:22155350 original size:12 final size:12
Alignment explanation
Indices: 22155333--22155432 Score: 80
Period size: 12 Copynumber: 8.2 Consensus size: 12
22155323 AAAATCAATC
*
22155333 AATAAAAAAATA
1 AATAAAAAAAGA
22155345 AATAAAAAAATGAA
1 AATAAAAAAA-G-A
22155359 AATAAAAAAAAGA
1 AAT-AAAAAAAGA
22155372 AATAAAAAAAGA
1 AATAAAAAAAGA
*
22155384 AA-AAAAGAAAAA
1 AATAAAA-AAAGA
**
22155396 AATCAAAATCA-A
1 AAT-AAAAAAAGA
*
22155408 AATGAAAAAAGA
1 AATAAAAAAAGA
*
22155420 AA-AAGAAAAGA
1 AATAAAAAAAGA
22155431 AA
1 AA
22155433 AGGAGAGGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
11 17 0.24
12 34 0.47
13 5 0.07
14 9 0.12
15 7 0.10
ACGTcount: A:0.81, C:0.02, G:0.08, T:0.09
Consensus pattern (12 bp):
AATAAAAAAAGA
Found at i:22155351 original size:27 final size:26
Alignment explanation
Indices: 22155311--22155417 Score: 80
Period size: 26 Copynumber: 4.2 Consensus size: 26
22155301 ATAAAAAATC
*
22155311 AAAATATAAA-AAAAAATCAATCAAT-A
1 AAAAAATAAATAAAAAATCAA--AATAA
*
22155337 AAAAAATAAATAAAAAAATGAAAATAA
1 AAAAAATAAAT-AAAAAATCAAAATAA
* **
22155364 AAAAAAGAAATAAAAAAAGAAAA-AA
1 AAAAAATAAATAAAAAATCAAAATAA
* * *
22155389 AGAAAA-AAAT-CAAAATCAAAATGA
1 AAAAAATAAATAAAAAATCAAAATAA
22155413 AAAAA
1 AAAAA
22155418 GAAAAAGAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
23 8 0.12
24 9 0.13
25 7 0.10
26 23 0.34
27 11 0.16
28 9 0.13
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.12
Consensus pattern (26 bp):
AAAAAATAAATAAAAAATCAAAATAA
Found at i:22155352 original size:13 final size:13
Alignment explanation
Indices: 22155336--22155381 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
22155326 ATCAATCAAT
22155336 AAAAAAATAAAT-
1 AAAAAAATAAATA
22155348 AAAAAAATGAAAATA
1 AAAAAAAT--AAATA
*
22155363 AAAAAAAGAAATA
1 AAAAAAATAAATA
22155376 AAAAAA
1 AAAAAA
22155382 GAAAAAAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 8 0.27
13 11 0.37
14 4 0.13
15 7 0.23
ACGTcount: A:0.85, C:0.00, G:0.04, T:0.11
Consensus pattern (13 bp):
AAAAAAATAAATA
Found at i:22155362 original size:26 final size:26
Alignment explanation
Indices: 22155311--22155403 Score: 86
Period size: 27 Copynumber: 3.5 Consensus size: 26
22155301 ATAAAAAATC
*
22155311 AAAATATAA-AAAAAAATCAATCAATAAA
1 AAAATA-AATAAAAAAATGAA--AATAAA
22155339 AAAATAAATAAAAAAATGAAAATAAAA
1 AAAATAAATAAAAAAATGAAAAT-AAA
*
22155366 AAAAGAAATAAAAAAA-GAAAA-AAA
1 AAAATAAATAAAAAAATGAAAATAAA
*
22155390 GAAAA-AAATCAAAA
1 -AAAATAAATAAAAA
22155404 TCAAAATGAA
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
24 11 0.19
25 4 0.07
26 8 0.14
27 20 0.34
28 16 0.27
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (26 bp):
AAAATAAATAAAAAAATGAAAATAAA
Found at i:22155386 original size:8 final size:8
Alignment explanation
Indices: 22155348--22155397 Score: 55
Period size: 8 Copynumber: 5.9 Consensus size: 8
22155338 AAAAATAAAT
22155348 AAAAAAATG
1 AAAAAAA-G
*
22155357 AAAATAAAA
1 AAAA-AAAG
*
22155366 AAAAGAAAT
1 AAAA-AAAG
22155375 AAAAAAAG
1 AAAAAAAG
22155383 AAAAAAAG
1 AAAAAAAG
22155391 AAAAAAA
1 AAAAAAA
22155398 TCAAAATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 18 0.50
9 15 0.42
10 3 0.08
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (8 bp):
AAAAAAAG
Found at i:22155394 original size:13 final size:12
Alignment explanation
Indices: 22155336--22155433 Score: 63
Period size: 14 Copynumber: 7.3 Consensus size: 12
22155326 ATCAATCAAT
*
22155336 AAAAAAATAAATA
1 AAAAAAAGAAA-A
*
22155349 AAAAAATGAAAATA
1 AAAAAAAG-AAA-A
*
22155363 AAAAAAAGAAAT
1 AAAAAAAGAAAA
22155375 AAAAAAAGAAAA
1 AAAAAAAGAAAA
22155387 AAAGAAAA-AAATCA
1 AAA-AAAAGAAA--A
22155401 AAATCAAAATGAAAA
1 AAA--AAAA-GAAAA
22155416 AAGAAAAAGAAAA
1 AA-AAAAAGAAAA
22155429 GAAAA
1 -AAAA
22155434 GGAGAGGCCA
Statistics
Matches: 70, Mismatches: 6, Indels: 18
0.74 0.06 0.19
Matches are distributed among these distances:
12 17 0.24
13 20 0.29
14 22 0.31
15 7 0.10
16 1 0.01
17 3 0.04
ACGTcount: A:0.82, C:0.02, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:22155423 original size:20 final size:17
Alignment explanation
Indices: 22155303--22155433 Score: 59
Period size: 20 Copynumber: 7.0 Consensus size: 17
22155293 CAGATTCAAT
*
22155303 AAAAAATCAAAATATAAA
1 AAAAAAACAAAATA-AAA
*
22155321 AAAAAATCAATCAATAAAAA
1 AAAAAAACAA--AAT-AAAA
*
22155341 AATAAATAAAAAAATGAAAA
1 AA-AAA-AACAAAAT-AAAA
22155361 TAAAAAAA-AGAAATAAAA
1 -AAAAAAACA-AAATAAAA
* *
22155379 AAAGAAA-AAAAGAAAA
1 AAAAAAACAAAATAAAA
22155395 AAATCAAAATCAAAATGAAAA
1 AAA--AAAA-CAAAAT-AAAA
* *
22155416 AAGAAAAAGAAAAGAAAA
1 AA-AAAAACAAAATAAAA
22155434 GGAGAGGCCA
Statistics
Matches: 91, Mismatches: 9, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
16 10 0.11
17 7 0.08
18 22 0.24
19 10 0.11
20 26 0.29
21 12 0.13
22 4 0.04
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAAAAACAAAATAAAA
Found at i:22156448 original size:83 final size:84
Alignment explanation
Indices: 22156304--22156476 Score: 321
Period size: 83 Copynumber: 2.1 Consensus size: 84
22156294 CTAAAAAAAA
* *
22156304 AGAGACCAAGGTGAAAACCTGCAAAGGGCACTTTGAGTCCAAAAAATAAAAATAAATCAAAAACA
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAATAAAAATAAATCAAAAACA
22156369 AAAAAAG-AAAGAAAATGG
66 AAAAAAGAAAAGAAAATGG
22156387 AGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAATAAAAATAAATCAAAAACA
1 AGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAATAAAAATAAATCAAAAACA
22156452 AAAAAAGAAAAGAAAATGG
66 AAAAAAGAAAAGAAAATGG
22156471 AGAGGC
1 AGAGGC
22156477 GCTTTGAGAG
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
83 70 0.80
84 17 0.20
ACGTcount: A:0.55, C:0.14, G:0.20, T:0.11
Consensus pattern (84 bp):
AGAGGCCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAATAAAAATAAATCAAAAACA
AAAAAAGAAAAGAAAATGG
Found at i:22157904 original size:44 final size:44
Alignment explanation
Indices: 22157840--22158138 Score: 404
Period size: 44 Copynumber: 6.8 Consensus size: 44
22157830 ATACCAATTA
* *
22157840 TATCTCCCTAGG-CAGTAGTGGAATAGGTTGAATATTGTAAGTCC
1 TATCTCCCT-GGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
22157884 TATCTCACTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
22157928 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTATAAGCCC
1 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
22157972 TATCTCCCTGGACAACAGTGGAATAGGATGAAGATTGTAAGCCC
1 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
22158016 TATCTCTCTGGACAGCAGCGGAATAGGTTAAAGATTGTAAGTCC
1 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
22158060 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AGATCA
1 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAG-TCC
* ** * * *
22158104 TGTCTCCCTAAACAGTAGTGGAATAGATCGAAGAT
1 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGAT
22158139 GACAAATCTT
Statistics
Matches: 228, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
43 4 0.02
44 224 0.98
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:22158378 original size:49 final size:49
Alignment explanation
Indices: 22158143--22158784 Score: 407
Period size: 49 Copynumber: 13.2 Consensus size: 49
22158133 GAAGATGACA
* * * *
22158143 AATCTTACTTCCCTGGCAGTGCAGTTGAACAGATTGAAGCTACAACGGC-
1 AATCTTA-TTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * * * * ** *
22158192 AGATTTTGCTTCCCTGACAATGCAGTTAAAAAGATTAAAGCTACAACAGCG
1 A-ATCTT-ATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
** * ** * * ** *
22158243 AATCTTACCTCTCAGGTGGTGTAGTGGAACAGATTAAAGCCACAAGGGTG
1 AATCTTATTTC-CTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * * * *
22158293 AATCTTGCTTTCCCGACATTGCAGT-TAA-AGATTAAAGCTACAACAGCG
1 AATCTT-ATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * * *
22158341 AATCTTATTTCCTGGTAGTGTAGTGGAACAGATTAAAGCCACAACGGCG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
** ** * * *
22158390 AATCTTGCTTCCTCGATATTGCAGT-TAA-AGATTAAAGCTACAACAACG
1 AATCTTATTTCCT-GGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* *
22158438 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAA-AGGTG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACA-GCG
* * * * * *
22158487 AATCTTGCTTCCCCGACATTGCAGT-TAA-AGATTAAAGCTACAACAGCG
1 AATCTT-ATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * * *
22158535 AATCTTATTTCCTGGCAGTGCAATGGAACAGATTAAAGCCACAACGGTG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
** * * *
22158584 AATCTTGCTTCC--CCA--ACA-TTG--CAG-TTAAAGCTACAACAGCG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * * * * *
22158625 AATATTATTTCCTGGAAGTACAATGGAACAGATTAAAGCTACAACGGTG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * * * * ** * * * *
22158674 AATCTTGCTTCCCCGACATTGCAGTTAAAAATATTAAAGCTACAACAACA
1 AATCTT-ATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
* * *
22158724 AATATTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGTTACAACGGCG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
*
22158773 AATCTTGTTTCC
1 AATCTTATTTCC
22158785 CCGACATTGC
Statistics
Matches: 435, Mismatches: 134, Indels: 48
0.71 0.22 0.08
Matches are distributed among these distances:
41 23 0.05
42 3 0.01
43 1 0.00
44 2 0.00
45 5 0.01
46 2 0.00
47 34 0.08
48 82 0.19
49 146 0.34
50 134 0.31
51 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (49 bp):
AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCTACAACAGCG
Found at i:22158393 original size:97 final size:97
Alignment explanation
Indices: 22158143--22158801 Score: 818
Period size: 97 Copynumber: 6.8 Consensus size: 97
22158133 GAAGATGACA
* * * * * *
22158143 AATCTTACTTCCCTGGCAGTGCAGTTGAACAGATTGAAGCTACAACGG-CAGATTTTGC-TTCCC
1 AATCTTA-TTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGA-ATCTTGCTTTCCC
*
22158206 TGACAATGCAGTTAAAAAGATTAAAGCTACAACAGCG
64 -GACATTGCAGTT--AAAGATTAAAGCTACAACAGCG
** * ** * *
22158243 AATCTTACCTCTCAGGTGGTGTAGTGGAACAGATTAAAGCCACAAGGGTGAATCTTGCTTTCCCG
1 AATCTTATTTC-CTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCG
22158308 ACATTGCAGTTAAAGATTAAAGCTACAACAGCG
65 ACATTGCAGTTAAAGATTAAAGCTACAACAGCG
* * *
22158341 AATCTTATTTCCTGGTAGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCTTGC-TTCCTCG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCC-CG
* *
22158405 ATATTGCAGTTAAAGATTAAAGCTACAACAACG
65 ACATTGCAGTTAAAGATTAAAGCTACAACAGCG
* *
22158438 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAAAGGTGAATCTTGCTTCCCCGA
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGA
22158503 CATTGCAGTTAAAGATTAAAGCTACAACAGCG
66 CATTGCAGTTAAAGATTAAAGCTACAACAGCG
* * *
22158535 AATCTTATTTCCTGGCAGTGCAATGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCAA
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGA
22158600 CATTGC------AG-TTAAAGCTACAACAGCG
66 CATTGCAGTTAAAGATTAAAGCTACAACAGCG
* * * * * *
22158625 AATATTATTTCCTGGAAGTACAATGGAACAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGA
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGA
* * *
22158690 CATTGCAGTTAAAAATATTAAAGCTACAACAACA
66 CATTGCAGTT--AAAGATTAAAGCTACAACAGCG
* ** *
22158724 AATATTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGTTACAACGGCGAATCTTG-TTTCCCCG
1 AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTT-CCCG
22158788 ACATTGCAGTTAAA
65 ACATTGCAGTTAAA
22158802 CAGATTGAAG
Statistics
Matches: 498, Mismatches: 46, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
90 83 0.17
91 2 0.00
96 4 0.01
97 232 0.47
98 37 0.07
99 82 0.16
100 52 0.10
101 6 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (97 bp):
AATCTTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGA
CATTGCAGTTAAAGATTAAAGCTACAACAGCG
Found at i:22158671 original size:90 final size:90
Alignment explanation
Indices: 22158518--22158801 Score: 388
Period size: 90 Copynumber: 3.1 Consensus size: 90
22158508 CAGTTAAAGA
* *
22158518 TTAAAGCTACAACAGCGAATCTTATTTCCTGGCAGTGCAATGGAACAGATTAAAGCCACAACGGT
1 TTAAAGCTACAACAGCGAATATTATTTCCTGGCAGTGCAATGGAACAGATTAAAGCTACAACGGT
*
22158583 GAATCTTGCTTCCCCAACATTGCAG
66 GAATCTTGCTTCCCCGACATTGCAG
* *
22158608 TTAAAGCTACAACAGCGAATATTATTTCCTGGAAGTACAATGGAACAGATTAAAGCTACAACGGT
1 TTAAAGCTACAACAGCGAATATTATTTCCTGGCAGTGCAATGGAACAGATTAAAGCTACAACGGT
22158673 GAATCTTGCTTCCCCGACATTGCAG
66 GAATCTTGCTTCCCCGACATTGCAG
* * * *
22158698 TTAAAAATATTAAAGCTACAACAACAAATATTATTTCCTGGCAGTGCAGTGGAACAGATTAAAGT
1 ---------TTAAAGCTACAACAGCGAATATTATTTCCTGGCAGTGCAATGGAACAGATTAAAGC
* *
22158763 TACAACGGCGAATCTTGTTTCCCCGACATTGCAG
57 TACAACGGTGAATCTTGCTTCCCCGACATTGCAG
22158797 TTAAA
1 TTAAA
22158802 CAGATTGAAG
Statistics
Matches: 172, Mismatches: 13, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
90 90 0.52
99 82 0.48
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (90 bp):
TTAAAGCTACAACAGCGAATATTATTTCCTGGCAGTGCAATGGAACAGATTAAAGCTACAACGGT
GAATCTTGCTTCCCCGACATTGCAG
Found at i:22158804 original size:50 final size:50
Alignment explanation
Indices: 22158651--22158807 Score: 172
Period size: 50 Copynumber: 3.2 Consensus size: 50
22158641 AGTACAATGG
* *
22158651 AACAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTA
1 AACAGATTAAAGCTACAACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
* * ** * * * * * * **
22158701 AAAATATTAAAGCTACAACAACAAATATTATTT-CCTGGCAGTGCAGTGG
1 AACAGATTAAAGCTACAACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
*
22158750 AACAGATTAAAGTTACAACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
1 AACAGATTAAAGCTACAACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
22158800 AACAGATT
1 AACAGATT
22158808 GAAGACAGTA
Statistics
Matches: 79, Mismatches: 27, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
49 36 0.46
50 43 0.54
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (50 bp):
AACAGATTAAAGCTACAACGGCGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:22163944 original size:113 final size:114
Alignment explanation
Indices: 22163745--22163951 Score: 310
Period size: 113 Copynumber: 1.8 Consensus size: 114
22163735 TAATAGTTAC
*
22163745 TAACAAAATAACTTTAAAATAAATTAAAAAAATAATAAAAGATTACATTCATAACCTAACAGATC
1 TAACAAAATAACTTTAAAATAAATTAAAAAAATAATAAAAGATTACATTCATAACCTAACAAATC
22163810 ACCATAAACATTAAACCAAACAAACAATTAACCGAGTCACAAAAATTAA
66 ACCATAAACATTAAACCAAACAAACAATTAACCGAGTCACAAAAATTAA
* * *
22163859 TAACAAAATGACTTTAAAATAAATT-AAAAATTTATAAAA-ATTTACATTCATAACCTAACAAAT
1 TAACAAAATAACTTTAAAATAAATTAAAAAAATAATAAAAGA-TTACATTCATAACCTAACAAAT
** * * *
22163922 CTTCATCAACATTAAACTAAACAAGCAATT
65 CACCATAAACATTAAACCAAACAAACAATT
22163952 TATAATAGTT
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
112 1 0.01
113 58 0.70
114 24 0.29
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.26
Consensus pattern (114 bp):
TAACAAAATAACTTTAAAATAAATTAAAAAAATAATAAAAGATTACATTCATAACCTAACAAATC
ACCATAAACATTAAACCAAACAAACAATTAACCGAGTCACAAAAATTAA
Found at i:22164086 original size:4 final size:4
Alignment explanation
Indices: 22164077--22164124 Score: 51
Period size: 4 Copynumber: 11.2 Consensus size: 4
22164067 TTCTTCTCCA
* *
22164077 TTCT TTCT TTCT TTCT TTCT TTCT TCTCC CTCT CTTCT TTCT TCTCT T
1 TTCT TTCT TTCT TTCT TTCT TTCT T-TCT TTCT -TTCT TTCT T-TCT T
22164125 CTGATATCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
4 28 0.76
5 9 0.24
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (4 bp):
TTCT
Found at i:22164101 original size:30 final size:29
Alignment explanation
Indices: 22164060--22164124 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
22164050 ATCATAATCC
*
22164060 TTCTTTTTTCTTCTCCAT-TCTTTCTTTCT
1 TTCTTTTTTCTTCTCCCTCTC-TTCTTTCT
22164089 TTCTTTCTTTCTTCTCCCTCTCTTCTTTCT
1 TTCTTT-TTTCTTCTCCCTCTCTTCTTTCT
22164119 TCTCTT
1 T-TCTT
22164125 CTGATATCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 6 0.19
30 20 0.62
31 6 0.19
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (29 bp):
TTCTTTTTTCTTCTCCCTCTCTTCTTTCT
Found at i:22164125 original size:12 final size:12
Alignment explanation
Indices: 22164061--22164126 Score: 57
Period size: 12 Copynumber: 5.5 Consensus size: 12
22164051 TCATAATCCT
*
22164061 TCTTTTTTCTTC
1 TCTTCTTTCTTC
22164073 TCCATTCTTTCTT-
1 T-C-TTCTTTCTTC
22164086 TCTTTCTTTCTT-
1 TC-TTCTTTCTTC
* *
22164098 TCTTC-TCCCTC
1 TCTTCTTTCTTC
22164109 TCTTCTTTCTTC
1 TCTTCTTTCTTC
22164121 TCTTCT
1 TCTTCT
22164127 GATATCTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 3 0.07
11 8 0.18
12 23 0.52
13 2 0.05
14 8 0.18
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (12 bp):
TCTTCTTTCTTC
Found at i:22172692 original size:20 final size:20
Alignment explanation
Indices: 22172669--22172714 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
22172659 TGTTAATATT
*
22172669 TTGTTATTTATTCAAATAAG
1 TTGTTACTTATTCAAATAAG
* *
22172689 TTGTTACTTATTTAAATAGG
1 TTGTTACTTATTCAAATAAG
22172709 TTGTTA
1 TTGTTA
22172715 AGCTTTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.52
Consensus pattern (20 bp):
TTGTTACTTATTCAAATAAG
Found at i:22177945 original size:19 final size:18
Alignment explanation
Indices: 22177909--22177948 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
22177899 AAGTCTACCA
22177909 ATTTAAGGTTTTTTTAGT
1 ATTTAAGGTTTTTTTAGT
22177927 ATTT-AGGTTTCTATTTAGT
1 ATTTAAGGTTT-T-TTTAGT
22177946 ATT
1 ATT
22177949 ACTTTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 5 0.25
19 9 0.45
ACGTcount: A:0.23, C:0.03, G:0.15, T:0.60
Consensus pattern (18 bp):
ATTTAAGGTTTTTTTAGT
Found at i:22180776 original size:6 final size:6
Alignment explanation
Indices: 22180765--22180789 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22180755 TCTGTGTGTT
22180765 GAAAGA GAAAGA GAAAGA GAAAGA G
1 GAAAGA GAAAGA GAAAGA GAAAGA G
22180790 GTGGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (6 bp):
GAAAGA
Found at i:22186634 original size:24 final size:24
Alignment explanation
Indices: 22186605--22186650 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
22186595 CAAGCCAGGT
*
22186605 ACAAAAAAGAAATAGAAGAAAACA
1 ACAAAAAAGAAATAAAAGAAAACA
*
22186629 ACAAAAAAGAAGTAAAAGAAAA
1 ACAAAAAAGAAATAAAAGAAAA
22186651 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.76, C:0.07, G:0.13, T:0.04
Consensus pattern (24 bp):
ACAAAAAAGAAATAAAAGAAAACA
Found at i:22190760 original size:26 final size:26
Alignment explanation
Indices: 22190729--22190803 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 26
22190719 ATATATTTTC
* *
22190729 TCAAAATTTTATTAGGGGTAAAATGG
1 TCAAAATTTTATTAGAGGTAAAATCG
* *
22190755 TTAAAATTTTTACTAGAGGTAAAATCG
1 TCAAAA-TTTTATTAGAGGTAAAATCG
22190782 TCAAAA-TTTATT-GAGGTAAAAT
1 TCAAAATTTTATTAGAGGTAAAAT
22190804 AAAGATGAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
24 10 0.24
25 5 0.12
26 5 0.12
27 22 0.52
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.36
Consensus pattern (26 bp):
TCAAAATTTTATTAGAGGTAAAATCG
Found at i:22193968 original size:25 final size:25
Alignment explanation
Indices: 22193940--22194019 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
22193930 AGCTCACATA
* * *
22193940 AGCTTCCTATTATTCAGCTCGTATG
1 AGCTTCCCATTATTCAACTCGCATG
* *
22193965 AGCTTCCCGTTATTTAACTCGCATG
1 AGCTTCCCATTATTCAACTCGCATG
* * * *
22193990 AGCTTCCCGTTATTTAACTCGGAAG
1 AGCTTCCCATTATTCAACTCGCATG
22194015 AGCTT
1 AGCTT
22194020 ATTGTTTACA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (25 bp):
AGCTTCCCATTATTCAACTCGCATG
Found at i:22201297 original size:25 final size:25
Alignment explanation
Indices: 22201268--22201337 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
22201258 ACTCAAGTCA
22201268 CATGAGCTTCCCGTTATTCAGCTCG
1 CATGAGCTTCCCGTTATTCAGCTCG
*
22201293 TATGAGCTTCCCGTTATTCAGCTCG
1 CATGAGCTTCCCGTTATTCAGCTCG
*
22201318 CATGAGCTTTCCGTTATTCA
1 CATGAGCTTCCCGTTATTCA
22201338 ACTCAGAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.36
Consensus pattern (25 bp):
CATGAGCTTCCCGTTATTCAGCTCG
Found at i:22203536 original size:17 final size:17
Alignment explanation
Indices: 22203513--22203561 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
22203503 TTTTATTAAT
22203513 ATTTTAACATATAAAATC
1 ATTTTAA-ATATAAAATC
*
22203531 -TTTTAAAT-TAAAAAC
1 ATTTTAAATATAAAATC
*
22203546 ATTTTAAACATAAAAT
1 ATTTTAAATATAAAAT
22203562 TTCATACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 6 0.23
16 9 0.35
17 11 0.42
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTTAAATATAAAATC
Found at i:22206723 original size:33 final size:34
Alignment explanation
Indices: 22206671--22206737 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
22206661 ATTATTTTGA
22206671 ATGCAAAAGAAAAAAAAGGAAAATTAAATACACT
1 ATGCAAAAGAAAAAAAAGGAAAATTAAATACACT
22206705 ATGCAAAAG-AAAAAAAGGAAAATTAAATACACT
1 ATGCAAAAGAAAAAAAAGGAAAATTAAATACACT
22206738 GAAATAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 24 0.73
34 9 0.27
ACGTcount: A:0.64, C:0.09, G:0.12, T:0.15
Consensus pattern (34 bp):
ATGCAAAAGAAAAAAAAGGAAAATTAAATACACT
Found at i:22207413 original size:22 final size:22
Alignment explanation
Indices: 22207375--22207420 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
22207365 GTATTTGTAA
* *
22207375 TGGATTTGATTTATTTTGTGTT
1 TGGATTTGATTGATTTTGGGTT
*
22207397 TGGATTTGATTGGTTTTGGGTT
1 TGGATTTGATTGATTTTGGGTT
22207419 TG
1 TG
22207421 TCTCTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.00, G:0.30, T:0.59
Consensus pattern (22 bp):
TGGATTTGATTGATTTTGGGTT
Found at i:22207801 original size:85 final size:85
Alignment explanation
Indices: 22207689--22207846 Score: 194
Period size: 85 Copynumber: 1.9 Consensus size: 85
22207679 TGTGGTTTTA
* * * * * *
22207689 ATCTGCTCCACTGTAATTTCAGGGAGATAGGATTGGT-TTCTTTT-GTCTACTCCACTGCAACTT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATT--TATGCTTTTAATCTACTCCACTGCAACTT
22207752 CAGGGAGATAAGACTAGATGTG
64 CAGGGAGATAAGACTAGATGTG
* * * *
22207774 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATGGTTTTAATCTGCTCCACTGTAACTTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTATGCTTTTAATCTACTCCACTGCAACTTCA
22207839 GGGAGATA
66 GGGAGATA
22207847 GGGTTGGTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
83 1 0.02
84 5 0.08
85 55 0.90
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (85 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTATGCTTTTAATCTACTCCACTGCAACTTCA
GGGAGATAAGACTAGATGTG
Found at i:22207836 original size:44 final size:44
Alignment explanation
Indices: 22207644--22208105 Score: 169
Period size: 44 Copynumber: 10.8 Consensus size: 44
22207634 ATACGTCTTC
* * * *
22207644 AATCTACTCTACTGCAAC-TCTATGGG-GATGAGATTTGTGGTTTT
1 AATCTGCTCCACTGCAACTTC-A-GGGAGATAAGATTTATGGTTTT
* * * **
22207688 AATCTGCTCCACTGTAATTTCAGGGAGATAGGATTGGT-TTCTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TATGGTTTT
* * * * *
22207733 -GTCTACTCCACTGCAACTTCAGGGAGATAAGA-CTA--GATGT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGTTTT
* * *
22207773 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTATGGTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGTTTT
* * * ** *
22207817 AATCTGCTCCACTGTAACTTCAGGGAGATAGGGTTGGT-TTCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGT-TTT
* * ** *
22207861 CATCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGATGCG----
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTATG-GTTTT
* ** * *
22207902 -ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTGGTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGTTTT
* * * * ** **
22207944 AATCCGCTCCGCTGCAACTTCAAGGAGATAGGATTGGTTTTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGTTTT
** * ** *
22207988 TGTCTGCTCCACTACTGCTT-AGTGAGATAAGACTTTATGCG----
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTATG-GTTTT
* ** * *
22208029 -ATCTGCTCCACTACTGCTT-AGGGAGATAAGATATGTGGTTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGTTTT
** * *
22208071 AAT-TCGCTCTGCTACAACTTCAGGGAGATAGGATT
1 AATCT-GCTCCACTGCAACTTCAGGGAGATAAGATT
22208106 AGTAGCTTCA
Statistics
Matches: 310, Mismatches: 80, Indels: 56
0.70 0.18 0.13
Matches are distributed among these distances:
38 2 0.01
39 7 0.02
40 62 0.20
41 29 0.09
42 3 0.01
43 50 0.16
44 149 0.48
45 7 0.02
46 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTATGGTTTT
Found at i:22207913 original size:40 final size:41
Alignment explanation
Indices: 22207862--22208059 Score: 161
Period size: 40 Copynumber: 4.8 Consensus size: 41
22207852 GGTTTCTTTC
22207862 ATCTGCTCCACTACTGCTTAGGGAGATAAGACTT-GATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGATGCG
* ***
22207902 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGATGCG
* * * ** * * * **
22207945 ATCCGCTCCGCTGCAACTTCAAGGAGATAGGA-TTGGTTTTTTTTG
1 ATCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGG----ATGCG
* *
22207990 -TCTGCTCCACTACTGCTTAGTGAGATAAGACTT-TATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGATGCG
22208029 ATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGA
22208060 TATGTGGTTT
Statistics
Matches: 123, Mismatches: 25, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
39 2 0.02
40 60 0.49
41 5 0.04
42 2 0.02
43 25 0.20
44 25 0.20
45 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (41 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGATGCG
Found at i:22207964 original size:127 final size:127
Alignment explanation
Indices: 22207674--22208105 Score: 567
Period size: 127 Copynumber: 3.4 Consensus size: 127
22207664 TATGGGGATG
* * * *
22207674 AGATTTGTGGTTTTAATCTGCTCCACTGTAATTTCAGGGAGATAGGATTGGTTTCTTTTGTCTAC
1 AGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGC
* ** * * * * ** *
22207739 TCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
66 TCCACTACTGCTT-AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTT-AGGGAGATA
* * * * **
22207803 AGATTTATGGTTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGGTTGGTTTCTTTCATCTGC
1 AGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGC
22207868 TCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATA
66 TCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATA
* * * *
22207930 AGATCTGTGGTTTTAATCCGCTCCGCTGCAACTTCAAGGAGATAGGATTGGTTTTTTTTGTCTGC
1 AGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGC
* *
22207995 TCCACTACTGCTTAGTGAGATAAGACTTTATGCGATCTGCTCCACTACTGCTTAGGGAGATA
66 TCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATA
* * ** *
22208057 AGATATGTGGTTTTAATTCGCTCTGCTACAACTTCAGGGAGATAGGATT
1 AGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
22208106 AGTAGCTTCA
Statistics
Matches: 270, Mismatches: 33, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
127 167 0.62
128 34 0.13
129 69 0.26
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (127 bp):
AGATTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTTTGTCTGC
TCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATA
Found at i:22208169 original size:50 final size:49
Alignment explanation
Indices: 22208107--22210154 Score: 927
Period size: 50 Copynumber: 41.3 Consensus size: 49
22208097 GATAGGATTA
* * *
22208107 GTAGCTTCAATCTATTTAACTGCAATATCAGGGAAACAAGATTCGCCGTC
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* ** * * * * *
22208157 GTAGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGTAAGATTTGCCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * *
22208207 GTGGCTTAAATC-TTTAACTGCAATGTCAGGGAAACAAGATTTGCCGTC
1 GTAGCTTCAATCTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
** ** * *
22208255 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * *
22208305 GTGGCTTCAAT-TTTTAACTACAATGTCAGGGAAACAAGATTTGCCGTC
1 GTAGCTTCAATCTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
** * ** * *
22208353 GTAGCTTCAATCTGTTCCACTGTACCGTTAGGGAAGTAAGATTCGCCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
** * * * *
22208403 GCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCGCCATT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * *
22208452 GTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTTGCCTTT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* ** ** * * *
22208502 GTAGCTTTAATCAGCTCCACTGC-ATCG-CTTGGGAAGTAAGATTCGCTGTT
1 GTAGCTTCAATC-TTTTAACTGCAAT-GTC-AGGGAAGCAAGATTCGCCGTT
* * * * * *
22208552 GTGGCTTCAATCTTTTAAATTACAATGTCAGGGAAGCAAGATTCACCATC
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * ** * * * * *
22208602 GTAGCTTTAATCTACTCCACTACACTGCCAGGGAAGTAAGATTCACCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
*** * * * *
22208652 ACGGCTTTAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCGCCGTT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * ** ** * *
22208701 GTAGCTTTAATCTGCTCCACTGCACCG-CGAGGGAAGTAAGATTCACCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTC-AGGGAAGCAAGATTCGCCGTT
** * * *
22208751 GCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTC-CCCTT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * ** * * *
22208800 CGTAGCTTTAATCTGCTCCACTGC-ATCGCCAGGGAAGTAAGATTTGCCGTT
1 -GTAGCTTCAATCT-TTTAACTGCAAT-GTCAGGGAAGCAAGATTCGCCGTT
* * * **
22208851 G-AGACTTCAATCTTTTAAATTGCAATGTCCGGGAA-CACGATTCGTTGTT
1 GTAG-CTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * ** ** *
22208900 GTAGCTTTAATCTGCTCCACTGCACCG-CGAGGGAAGTAAGATTCGCCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTC-AGGGAAGCAAGATTCGCCGTT
** * *
22208950 GCGGCTTCAATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCACC-TT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * ** * *
22208999 CGTAGCTTTAATCTACTCCACTGC-ATCGCCAGGGAAGTAAGATTCGCCGTT
1 -GTAGCTTCAATCT-TTTAACTGCAAT-GTCAGGGAAGCAAGATTCGCCGTT
** * * * ** *
22209050 GCGGCTTCAATCTTCTTAATTGCAATGTCGGGGAAGCAAGATTCACTATC
1 GTAGCTTCAATCTT-TTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * * * * * *
22209100 GTAGCTTTAATCTACTTCACTACACTGCCAGAGAAGTAAGATTCACCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * ** *
22209150 GTGGCTTCAATCTTTCAAATTGTAATGTTGGGGAA-CAAGATTCACCGTT
1 GTAGCTTCAATCTTT-TAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* ** ** * * *
22209199 GTAGCTTCAATCTGATCCACTGC-ATCACTAGGAAAGTAAGATTCACCGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTC-AGGGAAGCAAGATTCGCCGTT
** * *
22209249 GCGGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGCAAGATTCGCAGTT
1 GTAGCTTCAATCTT-TTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * *
22209299 GTAGCTTCAAT-TTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTT
1 GTAGCTTCAATCTT-TT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * *
22209349 GTGGCTTCAATC-TTTAATTGCAATGTCAGGGAAACAAGA-TCTACCGTC
1 GTAGCTTCAATCTTTTAACTGCAATGTCAGGGAAGCAAGATTC-GCCGTT
** * ** * *
22209397 GTAGCTTCAATCTGTTCCACTGTACCGTCAGGGAAGTAAGATTCGCTGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
** * * * *
22209447 GCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCACCGTT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * *
22209496 GTAGC-TCAATCTTTTAAATTGCAATGTCGGGGAAGCAAAATTCACC-TT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * *** * * * **
22209544 CGTAGCTTTAATCTGCTCCGCTG-TATCGCCAGGGAAGTAAGATTCATCGTT
1 -GTAGCTTCAATCT-TTTAACTGCAAT-GTCAGGGAAGCAAGATTCGCCGTT
* * * * * * *
22209595 GCAGCTTTAATCTTCTTAATTGCAATGTCGGGGAAGCAAGATTCACTGTC
1 GTAGCTTCAATCTT-TTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * * ** * *
22209645 GTAACTTTAATCTGCTTCATTG-AACTACCAGGGAAGTAAGATTCACCGTT
1 GTAGCTTCAATCT-TTTAACTGCAA-TGTCAGGGAAGCAAGATTCGCCGTT
* * * * * * *
22209695 GTGGCTTCAATCTTTCAAATTACAATGTCGGGGAA-CAAGATTCGTCATT
1 GTAGCTTCAATCTTT-TAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* ** * * * *
22209744 GTAGCTTCAATCTGATCCACTGC-ATCGCCAGGAAAGTAAGATTCACCGTT
1 GTAGCTTCAATCT-TTTAACTGCAAT-GTCAGGGAAGCAAGATTCGCCGTT
* * * * *
22209794 GTGGCTTCAATCTTCTTAATTGCAATGTCGGGGAAGCAAGAATCGCCGTC
1 GTAGCTTCAATCTT-TTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * ** * * * * * **
22209844 GTAGCTTTAATCTGCTCCACTACACTGCCATGGAAGTAAGATTCGTTGTT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * ** *
22209894 GCAGCTTCAATATTTTAAATTGCAATGTTGGGGAAGCAAGATTCACCGTT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * ** * * * * * * *
22209944 GTAACTTTAATCTGCTCCACTACATTGCCATGGAAGTAAGATTCGACATT
1 GTAGCTTCAATCT-TTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * * * *
22209994 G-CGACTTCAATCTTTTAAATTGCAATATCGGGGAAGCAAGATT--CCGTC
1 GTAG-CTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
* * *** ** * *
22210042 CTAGCTTTAAT-TTGCCCCACTGC-ATCACCATGGAAGTAAGATTCGCCGTT
1 GTAGCTTCAATCTT--TTAACTGCAAT-GTCAGGGAAGCAAGATTCGCCGTT
** * * *
22210092 GCGGCTTCAATCTTTTCAATTGCAATGTCGGGGAAGCAAGATTCACCGTT
1 GTAGCTTCAATCTTTT-AACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
22210142 GTAGCTTCAATCT
1 GTAGCTTCAATCT
22210155 GTTCTACTGG
Statistics
Matches: 1425, Mismatches: 490, Indels: 166
0.68 0.24 0.08
Matches are distributed among these distances:
47 6 0.00
48 169 0.12
49 236 0.17
50 976 0.68
51 38 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (49 bp):
GTAGCTTCAATCTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCGTT
Found at i:22208290 original size:98 final size:98
Alignment explanation
Indices: 22208110--22208464 Score: 496
Period size: 98 Copynumber: 3.6 Consensus size: 98
22208100 AGGATTAGTA
* *
22208110 GCTTCAATCTATTTAACTGCAATATCAGGGAAACAAGATTCGCCGTCGTAGCTTTAATCTGTTCC
1 GCTTCAATC--TTTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCC
* * *
22208175 ACTGCACTGCCTGGGAAGTAAGATTTGCCGTTGTG
64 ACTGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* *
22208210 GCTTAAATCTTTAACTGCAATGTCAGGGAAACAAGATTTGCCGTCGTAGCTTCAATCTGTTCCAC
1 GCTTCAATCTTTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCAC
22208275 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
66 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * *
22208308 GCTTCAATTTTTAACTACAATGTCAGGGAAACAAGATTTGCCGTCGTAGCTTCAATCTGTTCCAC
1 GCTTCAATCTTTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCAC
* ** *
22208373 TGTACCGTTAGGGAAGTAAGATTCGCCGTTGCG
66 TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
* * * * *
22208406 GCTTCAATCTTTTAAATTGCAATGTC-GGGGAACACGATTCGCCATTGTAGCTTCAATCT
1 GCTTCAATC-TTT-AACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCT
22208465 TTTAAATTGC
Statistics
Matches: 231, Mismatches: 22, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
98 182 0.79
99 31 0.13
100 18 0.08
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (98 bp):
GCTTCAATCTTTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCAC
TGCACCGCCAGGGAAGTAAGATTCGCCGTTGTG
Found at i:22208569 original size:100 final size:100
Alignment explanation
Indices: 22208441--22209501 Score: 1267
Period size: 100 Copynumber: 10.7 Consensus size: 100
22208431 CGGGGAACAC
* ** ** *
22208441 GATTCGCCATTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTTGCCTTTGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCTTCGTAG
* **
22208506 CTTTAATCAGCTCCACTGCATCGCTTGGGAAGTAA
66 CTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
* * * * *
22208541 GATTCGCTGTTGTGGCTTCAATCTTTTAAATTACAATGTCAGGGAAGCAAGATTCACCATCGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCTTCGTAG
* *
22208606 CTTTAATCTACTCCACTACA-CTGCCAGGGAAGTAA
66 CTTTAATCTGCTCCACTGCATC-GCCAGGGAAGTAA
* * * * *
22208641 GATTCACCGTTACGGCTTTAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCGCCGTT-GTA
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACC-TTCGTA
* *
22208704 GCTTTAATCTGCTCCACTGCACCGCGAGGGAAGTAA
65 GCTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
* *
22208740 GATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCCCCTTCGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCTTCGTAG
22208805 CTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
66 CTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
* * * * * ** *
22208840 GATTTGCCGTTGAGACTTCAATCTTTTAAATTGCAATGTCCGGGAA-CACGATTC-GTTGTTGTA
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCT-TCGTA
* *
22208903 GCTTTAATCTGCTCCACTGCACCGCGAGGGAAGTAA
65 GCTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
*
22208939 GATTCGCCGTTGCGGCTTCAATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCACCTTCGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCTTCGTAG
*
22209004 CTTTAATCTACTCCACTGCATCGCCAGGGAAGTAA
66 CTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
22209039 GATTCGCCGTTGCGGCTTCAATCTTCTT-AATTGCAATGTCGGGGAAGCAAGATTCA-CTATCGT
1 GATTCGCCGTTGCGGCTTCAATCTT-TTAAATTGCAATGTCGGGGAAGCAAGATTCACCT-TCGT
* * * *
22209102 AGCTTTAATCTACTTCACTACA-CTGCCAGAGAAGTAA
64 AGCTTTAATCTGCTCCACTGCATC-GCCAGGGAAGTAA
* * * * *
22209139 GATTCACCGTTGTGGCTTCAATCTTTCAAATTGTAATGTTGGGGAA-CAAGATTCACCGTT-GTA
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACC-TTCGTA
* * * * *
22209202 GCTTCAATCTGATCCACTGCATCACTAGGAAAGTAA
65 GCTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
* * * *
22209238 GATTCACCGTTGCGGCTTCAATCTTCTT-AATTGCAATGTCAGGGAAGCAAGATTCGCAGTT-GT
1 GATTCGCCGTTGCGGCTTCAATCTT-TTAAATTGCAATGTCGGGGAAGCAAGATTCAC-CTTCGT
* * *
22209301 AGCTTCAATTTGTTCCACTGCA-CTGCCAGGGAAGTAA
64 AGCTTTAATCTGCTCCACTGCATC-GCCAGGGAAGTAA
* * * *
22209338 GATTCGCCGTTGTGGCTTCAATC-TTT-AATTGCAATGTCAGGGAAACAAGA-TCTACCGTCGTA
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTC-ACCTTCGTA
* * * * *
22209400 GCTTCAATCTGTTCCACTGTACCGTCAGGGAAGTAA
65 GCTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
* *
22209436 GATTCGCTGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCACCGTT-GTA
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACC-TTCGTA
22209499 GCT
65 GCT
22209502 CAATCTTTTA
Statistics
Matches: 835, Mismatches: 100, Indels: 53
0.85 0.10 0.05
Matches are distributed among these distances:
97 3 0.00
98 82 0.10
99 275 0.33
100 471 0.56
101 4 0.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (100 bp):
GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCTTCGTAG
CTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAA
Found at i:22208595 original size:199 final size:198
Alignment explanation
Indices: 22208441--22209501 Score: 1175
Period size: 199 Copynumber: 5.3 Consensus size: 198
22208431 CGGGGAACAC
* ** *
22208441 GATTCGCCATTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTTGCCTTTGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCTTTGTAG
* ** *
22208506 CTTTAATCAGCTCCACTGCATCGCTTGGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTAAA
66 CTTTAATCTGCTCCACTGCA-CGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAA
* * * ** *
22208571 TTACAATGTCAGGGAAGCAAGATTCACCATCGTAGCTTTAATCTACTCCACTACACTGCCAGGGA
130 TTGCAATGTCAGGGAAGCAAGATTCACCGTTGCGGCTTTAATCTACTCCACTGCA-TGCCAGGGA
22208636 AGTAA
194 AGTAA
* * * * *
22208641 GATTCACCGTTACGGCTTTAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCGCCGTTGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCTTTGTAG
* * *
22208705 CTTTAATCTGCTCCACTGCACCGCGAGGGAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAA
66 CTTTAATCTGCTCCACTGCA-CGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAA
* * *
22208770 TTGCAATGTCGGGGAAGCAAGATTC-CCCTT-CGTAGCTTTAATCTGCTCCACTGCATCGCCAGG
130 TTGCAATGTCAGGGAAGCAAGATTCACCGTTGCG--GCTTTAATCTACTCCACTGCAT-GCCAGG
22208833 GAAGTAA
192 GAAGTAA
* * * * * *
22208840 GATTTGCCGTTGAGACTTCAATCTTTTAAATTGCAATGTCCGGGAA-CACGATTCG-TTGTTGTA
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCT-TTGTA
* *
22208903 GCTTTAATCTGCTCCACTGCACCGCGAGGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAA
65 GCTTTAATCTGCTCCACTGCA-CGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAA
* *
22208968 ACTGCAATGTCGGGGAAGCAAGATTCACC-TT-CGTAGCTTTAATCTACTCCACTGCATCGCCAG
129 ATTGCAATGTCAGGGAAGCAAGATTCACCGTTGCG--GCTTTAATCTACTCCACTGCAT-GCCAG
22209031 GGAAGTAA
191 GGAAGTAA
* *
22209039 GATTCGCCGTTGCGGCTTCAATCTTCTT-AATTGCAATGTCGGGGAAGCAAGATTC-ACTATCGT
1 GATTCGCCGTTGCGGCTTCAATCTT-TTAAATTGCAATGTCGGGGAAGCAAGATTCGCCT-TTGT
* * * * * *
22209102 AGCTTTAATCTACTTCACTACACTGCCAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTCA
64 AGCTTTAATCTGCTCCACTGCAC-GCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTA
* ** ** *
22209167 AATTGTAATGTTGGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGA-TCCACTGCAT-CACTA
128 AATTGCAATGTCAGGGAAGCAAGATTCACCGTTGCGGCTTTAATCT-ACTCCACTGCATGC-C-A
*
22209229 GGAAAGTAA
190 GGGAAGTAA
* * **
22209238 GATTCACCGTTGCGGCTTCAATCTTCTT-AATTGCAATGTCAGGGAAGCAAGATTCGCAGTTGTA
1 GATTCGCCGTTGCGGCTTCAATCTT-TTAAATTGCAATGTCGGGGAAGCAAGATTCGCCTTTGTA
* * *
22209302 GCTTCAATTTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC-TTT-A
65 GCTTTAATCTGCTCCACTGCAC-GCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAA
* * ** * ** * * *
22209365 ATTGCAATGTCAGGGAAACAAGA-TCTACCGTCGTAGCTTCAATCTGTTCCACTGTACCGTCAGG
129 ATTGCAATGTCAGGGAAGCAAGATTC-ACCGTTGCGGCTTTAATCTACTCCACTGCA-TGCCAGG
22209429 GAAGTAA
192 GAAGTAA
* * * *
22209436 GATTCGCTGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCACCGTTGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCTTTGTAG
22209500 CT
66 CT
22209502 CAATCTTTTA
Statistics
Matches: 751, Mismatches: 89, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
197 37 0.05
198 87 0.12
199 499 0.66
200 128 0.17
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (198 bp):
GATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCTTTGTAG
CTTTAATCTGCTCCACTGCACGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
TGCAATGTCAGGGAAGCAAGATTCACCGTTGCGGCTTTAATCTACTCCACTGCATGCCAGGGAAG
TAA
Found at i:22208812 original size:299 final size:298
Alignment explanation
Indices: 22208441--22209501 Score: 1334
Period size: 299 Copynumber: 3.6 Consensus size: 298
22208431 CGGGGAACAC
* ** ** *
22208441 GATTCGCCATTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTTGCCTTTGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTT-AATTGCAATGTCGGGGAAGCAAGATTCCCCTTCGTAG
** *
22208506 CTTTAATCAGCTCCACTGCATCGCTTGGGAAGTAAGATTCGCTGTTGTGGCTTCAATCTTTTAAA
65 CTTTAATCAGCTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAA
* * * * *
22208571 TTACAATGTCAGGGAAGCAAGATTCACCATCGTAGCTTTAATCTACTCCACTACACTGCCAGGGA
130 TTGCAATGTCGGGGAA-CAAGATTCACCGTTGTAGCTTTAATCTACTCCACTGCACTGCCAGGGA
* * *
22208636 AGTAAGATTCACCGTTACGGCTTTAATCTTTTAAATTGCAATGTCGGGGAA-CACGATTCGCCGT
194 AGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGT
*
22208700 TGTAGCTTTAATCTGCTCCACTGCACCGCGAGGGAAGTAA
259 TGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAA
*
22208740 GATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCCCCTTCGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTT-AATTGCAATGTCGGGGAAGCAAGATTCCCCTTCGTAG
* * * *
22208805 CTTTAATCTGCTCCACTGCATCGCCAGGGAAGTAAGATTTGCCGTTGAGACTTCAATCTTTTAAA
65 CTTTAATCAGCTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAA
* * *** * * *
22208870 TTGCAATGTCCGGGAACACGATTCGTTGTTGTAGCTTTAATCTGCTCCACTGCACCGCGAGGGAA
130 TTGCAATGTCGGGGAACAAGATTCACCGTTGTAGCTTTAATCTACTCCACTGCACTGCCAGGGAA
* * *
22208935 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCACC-TT
195 GTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTT
* *
22208999 CGTAGCTTTAATCTACTCCACTGCATCGCCAGGGAAGTAA
260 -GTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAA
*
22209039 GATTCGCCGTTGCGGCTTCAATCTTCTTAATTGCAATGTCGGGGAAGCAAGATT-CACTATCGTA
1 GATTCGCCGTTGCGGCTTCAATCTT-TTAATTGCAATGTCGGGGAAGCAAGATTCCCCT-TCGTA
* * * * *
22209103 GCTTTAATCTA-CTTCACTACA-CTGCCAGAGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTC
64 GCTTTAATC-AGCTCCACTGCATC-GCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTT
* * *
22209166 AAATTGTAATGTTGGGGAACAAGATTCACCGTTGTAGCTTCAATCTGA-TCCACTGCA-T-CACT
127 AAATTGCAATGTCGGGGAACAAGATTCACCGTTGTAGCTTTAATCT-ACTCCACTGCACTGC-C-
* *
22209228 AGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTCTT-AATTGCAATGTCAGGGAAGCAAGATT
189 AGGGAAGTAAGATTCACCGTTGCGGCTTCAATCTT-TTAAATTGCAATGTCGGGGAAGCAAGATT
* * * * *
22209292 CGCAGTTGTAGCTTCAATTTGTTCCACTGCACTGCCAGGGAAGTAA
253 CGCCGTTGTAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAA
* * * * *
22209338 GATTCGCCGTTGTGGCTTCAATC-TTTAATTGCAATGTCAGGGAAACAAGA-TCTACCGTCGTAG
1 GATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC-CCCTTCGTAG
* * * * * * * *
22209401 CTTCAATCTGTTCCACTGTACCGTCAGGGAAGTAAGATTCGCTGTTGCGGCTTCAATCTTTTAAA
65 CTTTAATCAGCTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAA
*
22209466 TTGCAATGTCGGGGAACACGATTCACCGTTGTAGCT
130 TTGCAATGTCGGGGAACAAGATTCACCGTTGTAGCT
22209502 CAATCTTTTA
Statistics
Matches: 657, Mismatches: 90, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
296 1 0.00
297 114 0.17
298 94 0.14
299 442 0.67
300 6 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (298 bp):
GATTCGCCGTTGCGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCCCCTTCGTAGC
TTTAATCAGCTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAAT
TGCAATGTCGGGGAACAAGATTCACCGTTGTAGCTTTAATCTACTCCACTGCACTGCCAGGGAAG
TAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTG
TAGCTTTAATCTGCTCCACTGCACCGCCAGGGAAGTAA
Found at i:22209832 original size:299 final size:298
Alignment explanation
Indices: 22209485--22210155 Score: 842
Period size: 299 Copynumber: 2.3 Consensus size: 298
22209475 CGGGGAACAC
*
22209485 GATTCACCGTTGTAGC-TCAATCTTTTAAATTGCAATGTCGGGGAAGCAAAATTCACCTTCGTAG
1 GATTCACCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAAATTCACCTTCGTAG
* ** * *
22209549 CTTTAATCTGCTCCGCTGTA-TCGCCAGGGAAGTAAGATTCATCGTTGCAGCTTTAATCTTCTT-
66 CTTTAATCTGCTCCACTACACT-GCCAGGGAAGTAAGATTCATCGTTGCAGCTTCAATATT-TTA
* * *
22209612 AATTGCAATGTCGGGGAAGCAAGATTCACTGTCGTAACTTTAATCTGCTTCATTGA-ACTACCAG
129 AATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAACTTTAATCTGCTCCACT-ACACTACCAG
* * * *
22209676 GGAAGTAAGATTC-ACCGTTGTGGCTTCAATCTTTCAAATTACAATGTCGGGGAA-CAAGATT-C
193 GGAAGTAAGATTCGA-CATTGCGACTTCAATCTTTCAAATTACAATATCGGGGAAGCAAGATTCC
* * *
22209738 GTCATTGTAGCTTCAATCTGATCCACTGCATCGCCA-GGAAAGTAA
257 GTC---CTAGCTTCAATCTGACCCACTGCATCACCATGG-AAGTAA
* *
22209783 GATTCACCGTTGTGGCTTCAATCTTCTT-AATTGCAATGTCGGGGAAGCAAGAA-TCGCCGTCGT
1 GATTCACCGTTGTGGCTTCAATCTT-TTAAATTGCAATGTCGGGGAAGCAA-AATTCACCTTCGT
* * *
22209846 AGCTTTAATCTGCTCCACTACACTGCCATGGAAGTAAGATTCGTTGTTGCAGCTTCAATATTTTA
64 AGCTTTAATCTGCTCCACTACACTGCCAGGGAAGTAAGATTCATCGTTGCAGCTTCAATATTTTA
* * * * *
22209911 AATTGCAATGTTGGGGAAGCAAGATTCACCGTTGTAACTTTAATCTGCTCCACTACATTGCCATG
129 AATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAACTTTAATCTGCTCCACTACACTACCAGG
* *
22209976 GAAGTAAGATTCGACATTGCGACTTCAATCTTTTAAATTGCAATATCGGGGAAGCAAGATTCCGT
194 GAAGTAAGATTCGACATTGCGACTTCAATCTTTCAAATTACAATATCGGGGAAGCAAGATTCCGT
* * *
22210041 CCTAGCTTTAATTTGCCCCACTGCATCACCATGGAAGTAA
259 CCTAGCTTCAATCTGACCCACTGCATCACCATGGAAGTAA
* * * *
22210081 GATTCGCCGTTGCGGCTTCAATCTTTTCAATTGCAATGTCGGGGAAGCAAGATTCACCGTT-GTA
1 GATTCACCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAAATTCACC-TTCGTA
*
22210145 GCTTCAATCTG
65 GCTTTAATCTG
22210156 TTCTACTGGA
Statistics
Matches: 323, Mismatches: 37, Indels: 26
0.84 0.10 0.07
Matches are distributed among these distances:
297 3 0.01
298 110 0.34
299 193 0.60
300 13 0.04
301 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (298 bp):
GATTCACCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAAATTCACCTTCGTAG
CTTTAATCTGCTCCACTACACTGCCAGGGAAGTAAGATTCATCGTTGCAGCTTCAATATTTTAAA
TTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAACTTTAATCTGCTCCACTACACTACCAGGGA
AGTAAGATTCGACATTGCGACTTCAATCTTTCAAATTACAATATCGGGGAAGCAAGATTCCGTCC
TAGCTTCAATCTGACCCACTGCATCACCATGGAAGTAA
Found at i:22210288 original size:44 final size:43
Alignment explanation
Indices: 22210230--22210534 Score: 261
Period size: 44 Copynumber: 7.0 Consensus size: 43
22210220 AAGATCTGTT
* * *
22210230 TTCTTCGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTAC
1 TTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTAC
* * * *
22210274 TTCTTCGATCTACTTCCTACCAATATAGAAAGAC-AGTACCTGC
1 TTCTTCGATCTACTTCCCACCAATATAGGAAGACAAG-ATCTAC
* * * * *
22210317 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
1 T-TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTAC
* * * *
22210361 TTTCTTTGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTAC
1 -TTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTAC
* * * * *
22210406 ATCTTCGATCTACTCCGCCACCAATATGGGAAGACAATATCTGC
1 TTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTAC
* * * * * *
22210450 ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACTCGAT
1 TTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGA-TCTAC
* * * *
22210494 TTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
1 TTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCT
22210535 GCTTTAACGA
Statistics
Matches: 207, Mismatches: 48, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
42 2 0.01
43 39 0.19
44 143 0.69
45 23 0.11
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (43 bp):
TTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTAC
Found at i:22210454 original size:132 final size:132
Alignment explanation
Indices: 22210220--22210509 Score: 388
Period size: 132 Copynumber: 2.2 Consensus size: 132
22210210 TCAGAGAGAT
* *
22210220 AAGATCTGTTTTCTTCGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTACTTCTTCGATCT
1 AAGATCTGCTTTCTTCGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTACATCTTCGATCT
* * * *
22210285 ACTTCCTACCAATATAGAAAGACAGTACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAG
66 ACTCCCCACCAATATAGAAAGACAATACCTGCTATCTTCGATCCACTTCACGCCAATACATGAAG
22210350 AC
131 AC
*
22210352 AAGATCTGCTTTCTTTGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTACATCTTCGATCT
1 AAGATCTGCTTTCTTCGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTACATCTTCGATCT
* * * * * *
22210417 ACTCCGCCACCAATATGGGAAGACAATATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGA
66 ACTCC-CCACCAATATAGAAAGACAATACCTGCTATCTTCGATCCACTTCAC-GCCAATACATGA
22210480 AGAC
129 AGAC
* * *
22210484 AGGA-CTCGATTTCTTCGATCTACTTC
1 AAGATCT-GCTTTCTTCGATGTACTTC
22210510 ACGCCAATAC
Statistics
Matches: 138, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
131 3 0.02
132 113 0.82
133 22 0.16
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (132 bp):
AAGATCTGCTTTCTTCGATGTACTTCGCCACCAGTATGGGAAGACAAGATCTACATCTTCGATCT
ACTCCCCACCAATATAGAAAGACAATACCTGCTATCTTCGATCCACTTCACGCCAATACATGAAG
AC
Found at i:22212005 original size:11 final size:11
Alignment explanation
Indices: 22211962--22212010 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
22211952 ATTTTTGATT
22211962 TTTTTTTGCT-
1 TTTTTTTGCTC
*
22211972 TTTTATTTTCTC
1 TTTT-TTTGCTC
*
22211984 GTTTTTT--TC
1 TTTTTTTGCTC
22211993 TTTTTTTGCTC
1 TTTTTTTGCTC
22212004 TTTTTTT
1 TTTTTTT
22212011 TCCTCCACTG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 8 0.25
10 4 0.12
11 17 0.53
12 3 0.09
ACGTcount: A:0.02, C:0.12, G:0.06, T:0.80
Consensus pattern (11 bp):
TTTTTTTGCTC
Found at i:22215475 original size:22 final size:19
Alignment explanation
Indices: 22215449--22215497 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
22215439 TGTAGAACAA
22215449 ATTTAAAATGATAATGAATGAG
1 ATTTAAAAT-A-AAT-AATGAG
*
22215471 -TTTTAAATAAATAATGAG
1 ATTTAAAATAAATAATGAG
22215489 ATTTAAAAT
1 ATTTAAAAT
22215498 CAACTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 6 0.25
19 10 0.42
20 1 0.04
21 7 0.29
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (19 bp):
ATTTAAAATAAATAATGAG
Found at i:22215865 original size:25 final size:24
Alignment explanation
Indices: 22215823--22215871 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
22215813 GATAATATAC
* *
22215823 GTATATATATTTAAAATAATTAAT
1 GTATATAAATTTAAAATAAATAAT
*
22215847 GTATATAAAATTTGAAATAAATAAT
1 GTATAT-AAATTTAAAATAAATAAT
22215872 AATAAATCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (24 bp):
GTATATAAATTTAAAATAAATAAT
Found at i:22228444 original size:46 final size:47
Alignment explanation
Indices: 22228361--22228471 Score: 154
Period size: 46 Copynumber: 2.4 Consensus size: 47
22228351 ATGGCAAGAA
*
22228361 AATATTATTATA-TTTTTTATTTTAATTAATATAATTATTAAGTTGTT
1 AATATTATTATATTTTTTTACTTT-ATTAATATAATTATTAAGTTGTT
* *
22228408 AATAGTATTATATTTTTTTACTTT-TTAATATCATTATTAAGTTGTT
1 AATATTATTATATTTTTTTACTTTATTAATATAATTATTAAGTTGTT
*
22228454 AATAATTATTGTATTTTT
1 AAT-ATTATTATATTTTT
22228472 AATATTTTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
46 24 0.42
47 23 0.40
48 10 0.18
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.59
Consensus pattern (47 bp):
AATATTATTATATTTTTTTACTTTATTAATATAATTATTAAGTTGTT
Found at i:22230293 original size:57 final size:59
Alignment explanation
Indices: 22230206--22230327 Score: 194
Period size: 58 Copynumber: 2.1 Consensus size: 59
22230196 ATAAAAATGG
* *
22230206 TGAAAATGGAGAAATTGGAAACATTTGGAAATTATTATGGTTTTCT-CCAAAATGAAAA
1 TGAAAATGGAGAAATTGGAAACATTTGGAAATGAATATGGTTTTCTCCCAAAATGAAAA
* *
22230264 TGAAAATGGAGAAA-TGGAATCATTTGGAAATGAATGTGGTTTTCTCCCAAAATGAAAA
1 TGAAAATGGAGAAATTGGAAACATTTGGAAATGAATATGGTTTTCTCCCAAAATGAAAA
22230322 TGAAAA
1 TGAAAA
22230328 ATAAAAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
57 27 0.46
58 32 0.54
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.29
Consensus pattern (59 bp):
TGAAAATGGAGAAATTGGAAACATTTGGAAATGAATATGGTTTTCTCCCAAAATGAAAA
Found at i:22233845 original size:16 final size:16
Alignment explanation
Indices: 22233811--22233845 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22233801 AATTTAATAC
**
22233811 TTATCTTAATATTTTA
1 TTATCTTAATATTAAA
22233827 TTATCTTAATATTAAA
1 TTATCTTAATATTAAA
22233843 TTA
1 TTA
22233846 AATTAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATCTTAATATTAAA
Found at i:22233942 original size:57 final size:59
Alignment explanation
Indices: 22233832--22233946 Score: 180
Period size: 57 Copynumber: 1.9 Consensus size: 59
22233822 TTTTATTATC
*
22233832 TTAATATTAAATTAAATTAAATATTTATCTTACAGATAAGTATTCTATTAATTTAATAGAT
1 TTAATATTAAATTAAATTAAATATTTATCTT--AGATAAGTATTATATTAATTTAATAGAT
*
22233893 TTAATATTAAATTTAATT-AATATTTATCTT-GATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTAAATTAAATATTTATCTTAGATAAGTATTATATTAATTTAATA
22233947 TTAAAGTGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
57 23 0.44
60 12 0.23
61 17 0.33
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (59 bp):
TTAATATTAAATTAAATTAAATATTTATCTTAGATAAGTATTATATTAATTTAATAGAT
Found at i:22234727 original size:15 final size:15
Alignment explanation
Indices: 22234707--22234741 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
22234697 CAATGGAGGT
22234707 GAAGATGAGGACGAC
1 GAAGATGAGGACGAC
* *
22234722 GAAGATGGGGACGAT
1 GAAGATGAGGACGAC
22234737 GAAGA
1 GAAGA
22234742 AATCGACGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.09, G:0.43, T:0.09
Consensus pattern (15 bp):
GAAGATGAGGACGAC
Found at i:22240699 original size:28 final size:29
Alignment explanation
Indices: 22240671--22240737 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
22240661 TTATTGATTT
* *
22240671 TTTCAAATTTAATCCAACGACTTATTTTTC
1 TTTCAAATTTAATCAAACGAC-TATTTTTA
*
22240701 TTTCAAATTTAATCAAATGACTA-TTTTA
1 TTTCAAATTTAATCAAACGACTATTTTTA
22240729 TTTCAAATT
1 TTTCAAATT
22240738 AATAACATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 13 0.38
29 2 0.06
30 19 0.56
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (29 bp):
TTTCAAATTTAATCAAACGACTATTTTTA
Found at i:22241625 original size:20 final size:20
Alignment explanation
Indices: 22241602--22241642 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22241592 CTATTCAAAC
* *
22241602 AATATTACTTGAATAGTTAT
1 AATATTACATGAATAATTAT
*
22241622 AATATTAGATGAATAATTAT
1 AATATTACATGAATAATTAT
22241642 A
1 A
22241643 TGTCTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (20 bp):
AATATTACATGAATAATTAT
Found at i:22242317 original size:180 final size:180
Alignment explanation
Indices: 22242015--22242372 Score: 653
Period size: 180 Copynumber: 2.0 Consensus size: 180
22242005 GAAGCTTTGA
*
22242015 CATATTTCTTCGTTTTCTGTTCAATTTGTTGTTCATGTTTCATTCGTGTGTTCGAGATTTTCCTT
1 CATATTTCTTCGTTTTCTGTTCAATTTGTTGTTCATGTTTCATCCGTGTGTTCGAGATTTTCCTT
22242080 ACCAAACATTTGTACTATCAATTTTATGGTTATATTATCATGATGACTACTACAATACATGAAAG
66 ACCAAACATTTGTACTATCAATTTTATGGTTATATTATCATGATGACTACTACAATACATGAAAG
* *
22242145 TGGAACACTAAGGGAGTTGGCTTTAAACTTTTCCAAACTTGATCGGTTGT
131 TGGAACACTAAGGGAGTTGGCTGTAAACTTTGCCAAACTTGATCGGTTGT
*
22242195 CATATTTCTTCGTTTTCTGTTCAATTTTTTGTTCATGTTTCATCCGTGTGTTCGAGATTTTCCTT
1 CATATTTCTTCGTTTTCTGTTCAATTTGTTGTTCATGTTTCATCCGTGTGTTCGAGATTTTCCTT
* * *
22242260 ACCGAATATTTGTACTATCAATTTTATGGTTATATTATCATGATGACTATTACAATACATGAAAG
66 ACCAAACATTTGTACTATCAATTTTATGGTTATATTATCATGATGACTACTACAATACATGAAAG
22242325 TGGAACACTAAGGGAGTTGGCTGTAAACTTTGCCAAACTTGATCGGTT
131 TGGAACACTAAGGGAGTTGGCTGTAAACTTTGCCAAACTTGATCGGTT
22242373 TGATGGTGGA
Statistics
Matches: 171, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
180 171 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (180 bp):
CATATTTCTTCGTTTTCTGTTCAATTTGTTGTTCATGTTTCATCCGTGTGTTCGAGATTTTCCTT
ACCAAACATTTGTACTATCAATTTTATGGTTATATTATCATGATGACTACTACAATACATGAAAG
TGGAACACTAAGGGAGTTGGCTGTAAACTTTGCCAAACTTGATCGGTTGT
Found at i:22250112 original size:17 final size:18
Alignment explanation
Indices: 22250052--22250129 Score: 63
Period size: 17 Copynumber: 4.4 Consensus size: 18
22250042 AAATTTGAAG
*
22250052 AAGAGAAGAGAAGAAGAA
1 AAGAGAAGAGAAGCAGAA
* *
22250070 GAGAGCAG-GAAGCAGAA
1 AAGAGAAGAGAAGCAGAA
*
22250087 AA-AAAAGAGAAGCAGAA
1 AAGAGAAGAGAAGCAGAA
* * *
22250104 TAGAGAGAGGGAAGGAGAA
1 AAGAGA-AGAGAAGCAGAA
22250123 AA-AGAAG
1 AAGAGAAG
22250130 GAAAAAATAA
Statistics
Matches: 46, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
16 3 0.07
17 21 0.46
18 11 0.24
19 11 0.24
ACGTcount: A:0.59, C:0.04, G:0.36, T:0.01
Consensus pattern (18 bp):
AAGAGAAGAGAAGCAGAA
Found at i:22250117 original size:36 final size:34
Alignment explanation
Indices: 22250057--22250125 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 34
22250047 TGAAGAAGAG
22250057 AAGAGAAGAAGAAGAGAGCAGGAAGCAGAAAAAA
1 AAGAGAAGAAGAAGAGAGCAGGAAGCAGAAAAAA
* *
22250091 AAGAGAAGCAGAATAGAGAG-AGGGAAGGAGAAAAA
1 AAGAGAAGAAG-A-AGAGAGCA-GGAAGCAGAAAAA
22250126 GAAGGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 10 0.33
35 2 0.07
36 18 0.60
ACGTcount: A:0.59, C:0.04, G:0.35, T:0.01
Consensus pattern (34 bp):
AAGAGAAGAAGAAGAGAGCAGGAAGCAGAAAAAA
Found at i:22252062 original size:14 final size:14
Alignment explanation
Indices: 22252036--22252070 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
22252026 TGACATTTTT
*
22252036 TTCTAATGATACTA
1 TTCTAACGATACTA
*
22252050 TTTTAACGATACTA
1 TTCTAACGATACTA
22252064 TTCTAAC
1 TTCTAAC
22252071 ATGTAATTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:22256066 original size:49 final size:49
Alignment explanation
Indices: 22255945--22256136 Score: 244
Period size: 49 Copynumber: 3.8 Consensus size: 49
22255935 GTATTTATTT
* *
22255945 AATTAGATTAATTGCAACATTAAAACTTGGAATAAACTTTATGGTCTGGTCATA
1 AATTAGATTAATTACAACATTAAAACTTGGAACAAAC-TT-T-G--TGGTCATA
22255999 AATTAGATTAATTACAACATTAAAACTTGGAACAAACTTTGTGGTCATA
1 AATTAGATTAATTACAACATTAAAACTTGGAACAAACTTTGTGGTCATA
* * * **
22256048 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACATTATAAT-ATA
1 AATTAGATTAATTACAACATTAAAACTTGGAACAAACTTTGTGGTCATA
*
22256096 AATTA-AATACATTACAACATTAAAACTTGGAACAAACTTTG
1 AATTAGATTA-ATTACAACATTAAAACTTGGAACAAACTTTG
22256137 CAATATAAAT
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
47 3 0.02
48 36 0.29
49 48 0.38
51 1 0.01
52 1 0.01
53 2 0.02
54 35 0.28
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (49 bp):
AATTAGATTAATTACAACATTAAAACTTGGAACAAACTTTGTGGTCATA
Found at i:22263350 original size:5 final size:6
Alignment explanation
Indices: 22263335--22263360 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22263325 AAAAAGGGGT
22263335 TTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT
22263361 ATTTGAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:22276850 original size:22 final size:23
Alignment explanation
Indices: 22276823--22276866 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22276813 TTAGCGAACA
22276823 AAATATATAAATAT-AAATAAAC
1 AAATATATAAATATAAAATAAAC
* *
22276845 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
22276867 ATATAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:22276868 original size:20 final size:21
Alignment explanation
Indices: 22276822--22276871 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
22276812 ATTAGCGAAC
22276822 AAAATATATAAATATAAATAA
1 AAAATATATAAATATAAATAA
* * *
22276843 ACAAATATTTATATATAAA-AT
1 A-AAATATATAAATATAAATAA
22276864 AAAATATA
1 AAAATATA
22276872 AATTGAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 15 0.62
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAATATATAAATATAAATAA
Found at i:22277491 original size:22 final size:22
Alignment explanation
Indices: 22277466--22277508 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
22277456 TAGTCATATA
22277466 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
22277488 ATAATTTATTATTTTAATAAA
1 ATAAATTATTAATATAATAAA
22277509 ATATTTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:22277545 original size:13 final size:14
Alignment explanation
Indices: 22277529--22277570 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
22277519 TTTCAATTTT
22277529 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
22277542 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
22277557 ATTTTAAATAATAT
1 ATTTT-AATAATAT
22277571 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Done.