Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 76 of 228
Found at i:22632036 original size:30 final size:28
Alignment explanation
Indices: 22631962--22632121 Score: 142
Period size: 29 Copynumber: 5.5 Consensus size: 28
22631952 ACAAAAAATA
*
22631962 AAAATTACATTTTGACCCCTAAACTTCTT
1 AAAATTACATTTTGACCCCTAAA-TTTTT
* ** *
22631991 GAAATCGC-GTTTGACCCCTAAATTTTCCT
1 AAAATTACATTTTGACCCCTAAATTTT--T
* *
22632020 AAAATTATATTTTGACCCCCAAACTTTTT
1 AAAATTACATTTTGACCCCTAAA-TTTTT
* *
22632049 GAAATTACATTTTGACCCATTAAATTTTT
1 AAAATTACATTTTGACCC-CTAAATTTTT
* *
22632078 GAAATTACATTTTGACTCCTAAATTTTCT
1 AAAATTACATTTTGACCCCTAAATTTT-T
*
22632107 AAAAATTATATTTTG
1 -AAAATTACATTTTG
22632122 GCCACACAAG
Statistics
Matches: 105, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
27 3 0.03
28 21 0.20
29 50 0.48
30 27 0.26
31 4 0.04
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (28 bp):
AAAATTACATTTTGACCCCTAAATTTTT
Found at i:22632089 original size:14 final size:14
Alignment explanation
Indices: 22632044--22632090 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
22632034 ACCCCCAAAC
22632044 TTTTTGAAATTACA
1 TTTTTGAAATTACA
* *
22632058 -TTTTGACCCATTAAA
1 TTTTTGA--AATTACA
22632073 TTTTTGAAATTACA
1 TTTTTGAAATTACA
22632087 TTTT
1 TTTT
22632091 GACTCCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 6 0.23
14 9 0.35
15 5 0.19
16 6 0.23
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (14 bp):
TTTTTGAAATTACA
Found at i:22632101 original size:28 final size:28
Alignment explanation
Indices: 22631963--22632104 Score: 151
Period size: 29 Copynumber: 4.9 Consensus size: 28
22631953 CAAAAAATAA
*
22631963 AAATTACATTTTGACCCCTAAACTTCTTG
1 AAATTACATTTTGACCCCTAAA-TTTTTG
** * *
22631992 AAATCGC-GTTTGACCCCTAAATTTTCCTA
1 AAATTACATTTTGACCCCTAAATTTT--TG
* *
22632021 AAATTATATTTTGACCCCCAAACTTTTTG
1 AAATTACATTTTGACCCCTAAA-TTTTTG
*
22632050 AAATTACATTTTGACCCATTAAATTTTTG
1 AAATTACATTTTGACCC-CTAAATTTTTG
*
22632079 AAATTACATTTTGACTCCTAAATTTT
1 AAATTACATTTTGACCCCTAAATTTT
22632105 CTAAAAATTA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
27 3 0.03
28 21 0.23
29 49 0.53
30 15 0.16
31 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (28 bp):
AAATTACATTTTGACCCCTAAATTTTTG
Found at i:22632492 original size:3 final size:3
Alignment explanation
Indices: 22632484--22632527 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
22632474 GGTTTTGAGA
* *
22632484 AAG AAG AAGG AAG AAG AAG AAA AAT AAG AAG AAG AAG AA- AAG AA
1 AAG AAG AA-G AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
22632528 AAAAAAGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:22632533 original size:9 final size:9
Alignment explanation
Indices: 22632521--22632559 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 9
22632511 GAAGAAGAAG
22632521 AAAAGAAAA
1 AAAAGAAAA
22632530 AAAAGAAAGAA
1 AAAAG-AA-AA
22632541 AAAAGAGAAA
1 AAAAGA-AAA
22632551 AAAAGAAAA
1 AAAAGAAAA
22632560 TAAATTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.30
10 11 0.41
11 8 0.30
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:22632535 original size:14 final size:14
Alignment explanation
Indices: 22632518--22632551 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
22632508 TAAGAAGAAG
22632518 AAGAAAAGAAAAAA
1 AAGAAAAGAAAAAA
22632532 AAG-AAAGAAAAAA
1 AAGAAAAGAAAAAA
*
22632545 GAGAAAA
1 AAGAAAA
22632552 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAGAAAAGAAAAAA
Found at i:22632540 original size:13 final size:13
Alignment explanation
Indices: 22632522--22632559 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
22632512 AAGAAGAAGA
22632522 AAAGAAAAAAAAG
1 AAAGAAAAAAAAG
*
22632535 AAAGAAAAAAGAG
1 AAAGAAAAAAAAG
22632548 AAA-AAAAGAAAA
1 AAAGAAAA-AAAA
22632560 TAAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAG
Found at i:22632558 original size:21 final size:22
Alignment explanation
Indices: 22632487--22632558 Score: 78
Period size: 21 Copynumber: 3.3 Consensus size: 22
22632477 TTTGAGAAAG
* *
22632487 AAGAAGGAAGAAGAAGA-AAAAT
1 AAGAAAGAAGAA-AAGAGAAAAA
22632509 AAGAAGAAGAAGAAAAGA-AAAAA
1 AAG-A-AAGAAGAAAAGAGAAAAA
22632532 AAGAAAGAA-AAAAGAGAAAAA
1 AAGAAAGAAGAAAAGAGAAAAA
22632553 AAGAAA
1 AAGAAA
22632559 ATAAATTTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.13
21 16 0.36
22 4 0.09
23 12 0.27
24 7 0.16
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.01
Consensus pattern (22 bp):
AAGAAAGAAGAAAAGAGAAAAA
Found at i:22632816 original size:21 final size:21
Alignment explanation
Indices: 22632783--22632877 Score: 81
Period size: 21 Copynumber: 4.6 Consensus size: 21
22632773 AGTCCAGAAT
* *
22632783 AAAGGAAGGAAAAAAAGGAAA
1 AAAGAAAGAAAAAAAAGGAAA
22632804 AAAGAAAGAAAAAAAA-GAAA
1 AAAGAAAGAAAAAAAAGGAAA
* * *
22632824 AAAAAAAGAGAAAAAGAGTAATGA
1 AAAGAAAGA-AAAAAAAGGAA--A
*
22632848 AAA-AAAG-AAAAAAAGAAAA
1 AAAGAAAGAAAAAAAAGGAAA
22632867 AAAGAAA-AAAA
1 AAAGAAAGAAAA
22632878 GGAAAAAGGG
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
19 4 0.07
20 18 0.30
21 29 0.48
22 2 0.03
23 4 0.07
24 4 0.07
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAAAAAAGGAAA
Found at i:22632817 original size:13 final size:13
Alignment explanation
Indices: 22632801--22632882 Score: 63
Period size: 13 Copynumber: 6.8 Consensus size: 13
22632791 GAAAAAAAGG
22632801 AAAAAAGAAAGAA
1 AAAAAAGAAAGAA
22632814 AAAAAAG-AA-AA
1 AAAAAAGAAAGAA
22632825 AAAAAAG--AG-A
1 AAAAAAGAAAGAA
* *
22632835 AAAAGAGTAATG-A
1 AAAAAAG-AAAGAA
22632848 AAAAAAGAAA-AA
1 AAAAAAGAAAGAA
22632860 AAGAAAA-AAAGAA
1 AA-AAAAGAAAGAA
*
22632873 AAAAAGGAAA
1 AAAAAAGAAA
22632883 AAGGGTTGTG
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
10 8 0.14
11 9 0.16
12 13 0.23
13 26 0.46
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAAGAA
Found at i:22632827 original size:8 final size:8
Alignment explanation
Indices: 22632791--22632884 Score: 95
Period size: 8 Copynumber: 11.8 Consensus size: 8
22632781 ATAAAGGAAG
22632791 GAAAAAAA
1 GAAAAAAA
*
22632799 GGAAAAAA
1 GAAAAAAA
22632807 GAAAGAAAA
1 GAAA-AAAA
22632816 -AAAAGAAA
1 GAAAA-AAA
22632824 -AAAAAAA
1 GAAAAAAA
*
22632831 GAGAAAAA
1 GAAAAAAA
** *
22632839 G-AGTAAT
1 GAAAAAAA
22632846 GAAAAAAA
1 GAAAAAAA
22632854 GAAAAAAA
1 GAAAAAAA
22632862 GAAAAAAA
1 GAAAAAAA
22632870 GAAAAAAA
1 GAAAAAAA
22632878 GGAAAAA
1 -GAAAAA
22632885 GGGTTGTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
7 7 0.10
8 54 0.76
9 10 0.14
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (8 bp):
GAAAAAAA
Found at i:22632851 original size:34 final size:32
Alignment explanation
Indices: 22632792--22632861 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 32
22632782 TAAAGGAAGG
22632792 AAAAAAAGGAAAAAAGAAAGAAAAAAAAGAAA
1 AAAAAAAGGAAAAAAGAAAGAAAAAAAAGAAA
*
22632824 AAAAAAAGAGAAAAAGAGTAATG-AAAAAAAGAAA
1 AAAAAAAG-GAAAAA-AG-AAAGAAAAAAAAGAAA
22632858 AAAA
1 AAAA
22632862 GAAAAAAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
32 8 0.24
33 6 0.18
34 17 0.50
35 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (32 bp):
AAAAAAAGGAAAAAAGAAAGAAAAAAAAGAAA
Found at i:22645442 original size:159 final size:159
Alignment explanation
Indices: 22645152--22645928 Score: 1029
Period size: 159 Copynumber: 4.9 Consensus size: 159
22645142 CAAGAAATAT
* * *
22645152 TTTTTAATTTCTGTTTTTTT--CAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAATTTCT-TTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* *
22645215 CACATACCGAGGTATTTTTTTAAA-TTCTGTTTTTCAAAAATCAACTCATATTGAGAGAGGCGAG
65 CACATACCGAGGTATTTTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
* * *
22645279 TTGAGCCTCGGGCACATGCTGAGGAATTT-
130 TTGAGCCTCGGACACATGCCGAGGTATTTC
*
22645308 TTTTTAATTTCTATTTTTTTAAAAAAAACTCTACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
1 TTTTTAATTTCT-TTTTTTTAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
22645372 ACATATACCGAGGTATTTTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTCA
64 TCACATACCGAGGTATTTTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
* * *
22645437 CTTGAGCCTCGAACACATGCCGATGTATTTC
129 GTTGAGCCTCGGACACATGCCGAGGTATTTC
* * * *
22645468 TTTTAAATTTC-TGTTTTT--CAAAAATCAACTCATATTGCGAGAGGTGAGATGAGCCTCAGGTC
1 TTTTTAATTTCTTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
* * *
22645530 ACATGCTGAGGTATTTTTTTAAATTTCTATTTTTTTGCAAAAATCAACTCATATTGCGAGAGGTG
66 ACATACCGAGGTATTTTTTTAAATTTC--TGTTTTT-CAAAAATCAACTCATATTGCGAGAGGTG
22645595 AGTTGAGCCTCGGACACATGCCGAGGTATTTC
128 AGTTGAGCCTCGGACACATGCCGAGGTATTTC
* *
22645627 TTTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
1 TTTTTAATTTCTTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
** *
22645692 ACACGCTGAGGTATTTTTTTTAAATTTCTGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGT
66 ACATACCGAGGTA-TTTTTTTAAATTTCTG--TTTTTC-AAAAATCAACTCATATTGCGAGAGGT
22645757 GAGTTGAGCCTCGGACACATGCCGAGGTATTTC
127 GAGTTGAGCCTCGGACACATGCCGAGGTATTTC
* ** *
22645790 TTTTAAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAATTTCT-TTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* * *
22645855 CACACGA-CGAGGTA-TTTTTT-AATTTTTGTTTTTTTTC-TAAATCAACTCATATTGCGAGAGG
65 CACA-TACCGAGGTATTTTTTTAAATTTCTG---TTTTTCAAAAATCAACTCATATTGCGAGAGG
22645916 TGAGTTGAGCCTC
126 TGAGTTGAGCCTC
22645929 AAGTCGCAAG
Statistics
Matches: 555, Mismatches: 47, Indels: 34
0.87 0.07 0.05
Matches are distributed among these distances:
155 31 0.06
156 51 0.09
158 41 0.07
159 158 0.28
160 50 0.09
161 8 0.01
162 69 0.12
163 89 0.16
164 58 0.10
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (159 bp):
TTTTTAATTTCTTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
ACATACCGAGGTATTTTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCGGACACATGCCGAGGTATTTC
Found at i:22645591 original size:81 final size:79
Alignment explanation
Indices: 22645151--22645951 Score: 994
Period size: 82 Copynumber: 10.1 Consensus size: 79
22645141 TCAAGAAATA
*
22645151 TTTTTT-AATTTCTGTTTTTTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGT
*
22645215 CACATACCGAGGTAT
65 CACATGCCGAGGTAT
* * *
22645230 TTTTTTAAA-TTCTG--TTTTTCAAAAATCAACTCATATTGAGAGAGGCGAGTTGAGCCTCGGGC
1 TTTTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTC
* *
22645292 ACATGCTGAGGAAT
66 ACATGCCGAGGTAT
* * * *
22645306 TTTTTTTAATTTCTATTTTTTTAAAAAAAACTCTACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TTTTTTAAATTTCTGTTTTTTT--CAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* * *
22645371 GACATATACCGAGGTAT
63 GTCACATGCCGAGGTAT
* * **
22645388 TTTTTTAAATTTCTG--TTTTTCAAAAATCAACTCATATTGCGAGAGGTCACTTGAGCCTCGAAC
1 TTTTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTC
*
22645451 ACATGCCGATGTAT
66 ACATGCCGAGGTAT
*
22645465 TTCTTTTAAATTTCTG--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGATGAGCCTCAGG
1 TT-TTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
*
22645528 TCACATGCTGAGGTAT
64 TCACATGCCGAGGTAT
* *
22645544 TTTTTTAAATTTCTATTTTTTTGCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA
1 TTTTTTAAATTTCTGTTTTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGT
22645609 CACATGCCGAGGTAT
65 CACATGCCGAGGTAT
* ***
22645624 TTCTTTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TT-TTTTAAATTTCTGTTTTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
* *
22645689 GTCACACGCTGAGGTATT
63 GTCACATGCCGAGGTA-T
*
22645707 TTTTTTAAATTTCTGTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA
1 TTTTTTAAATTTCTGTTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGT
22645772 CACATGCCGAGGTAT
65 CACATGCCGAGGTAT
***
22645787 TTCTTTTAAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TT-TTTTAAATTTCTGTTTTT--TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
* *
22645852 GGTCACACGACGAGGTA-
62 GGTCACATGCCGAGGTAT
* * *
22645869 TTTTTT-AATTTTTGTTTTTTTTC-TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
1 TTTTTTAAATTTCTG-TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
* * *
22645932 TCGCAAGTCGAGGTAT
64 TCACATGCCGAGGTAT
22645948 TTTT
1 TTTT
22645952 CAATTTCTAT
Statistics
Matches: 629, Mismatches: 70, Indels: 46
0.84 0.09 0.06
Matches are distributed among these distances:
76 22 0.03
77 91 0.14
78 120 0.19
79 36 0.06
80 40 0.06
81 138 0.22
82 165 0.26
83 17 0.03
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (79 bp):
TTTTTTAAATTTCTGTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTC
ACATGCCGAGGTAT
Found at i:22648974 original size:59 final size:58
Alignment explanation
Indices: 22648903--22649041 Score: 179
Period size: 59 Copynumber: 2.4 Consensus size: 58
22648893 AAAAATTCAA
* * * * *
22648903 AAAATTATATTTTGACCCCTAAACTTCTTGAAATCATATTTTGACCCCTAAATTTTTC
1 AAAATTAAATTTTGACCCCTAAAATTCTTGAAATCACATTTTGACCCATAAAATTTTC
* * *
22648961 TAAAATTAAATTTTGACCCCTAAAATTTTTGAAATTACATTTTGATCCATAAAATTTTC
1 -AAAATTAAATTTTGACCCCTAAAATTCTTGAAATCACATTTTGACCCATAAAATTTTC
* *
22649020 AAAATTACATTTTGACTCCTAA
1 AAAATTAAATTTTGACCCCTAA
22649042 GTTTTCTCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
58 20 0.29
59 50 0.71
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (58 bp):
AAAATTAAATTTTGACCCCTAAAATTCTTGAAATCACATTTTGACCCATAAAATTTTC
Found at i:22648976 original size:30 final size:30
Alignment explanation
Indices: 22648903--22649068 Score: 160
Period size: 29 Copynumber: 5.6 Consensus size: 30
22648893 AAAAATTCAA
* *
22648903 AAAATTATATTTTGACCCCTAAACTTCT-T
1 AAAATTATATTTTGACCCCTAAAATTTTCT
* * *
22648932 GAAATCATATTTTGACCCCTAAATTTTTCT
1 AAAATTATATTTTGACCCCTAAAATTTTCT
*
22648962 AAAATTAAATTTTGACCCCTAAAATTTT-T
1 AAAATTATATTTTGACCCCTAAAATTTTCT
* * * *
22648991 GAAATTACATTTTGATCCATAAAATTTTC-
1 AAAATTATATTTTGACCCCTAAAATTTTCT
* * *
22649020 AAAATTACATTTTGACTCCT-AAGTTTTCT
1 AAAATTATATTTTGACCCCTAAAATTTTCT
* *
22649049 CAAAAGTATATTTTGGCCCC
1 -AAAATTATATTTTGACCCC
22649069 AGAAGTTTTG
Statistics
Matches: 112, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
28 7 0.06
29 65 0.58
30 40 0.36
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (30 bp):
AAAATTATATTTTGACCCCTAAAATTTTCT
Found at i:22649721 original size:28 final size:28
Alignment explanation
Indices: 22649689--22649743 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
22649679 CCAGGCCCAA
*
22649689 CAGCAGGCCAGCAGGCCCATCCCAGCAT
1 CAGCAGGCCACCAGGCCCATCCCAGCAT
* * *
22649717 CAGCAGGCCCCCAGGCCCGTTCCAGCA
1 CAGCAGGCCACCAGGCCCATCCCAGCA
22649744 GCAGGCCCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.22, C:0.45, G:0.25, T:0.07
Consensus pattern (28 bp):
CAGCAGGCCACCAGGCCCATCCCAGCAT
Found at i:22649806 original size:7 final size:7
Alignment explanation
Indices: 22649789--22649844 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
22649779 AAAGGAAGGA
22649789 AAAAAAGG
1 AAAAAA-G
22649797 AAAAAAG
1 AAAAAAG
22649804 AAAGAAA-
1 AAA-AAAG
22649811 AAAAGAA-
1 AAAA-AAG
22649818 AAAAAAG
1 AAAAAAG
*
22649825 AGAAAAG
1 AAAAAAG
*
22649832 AGAAAAG
1 AAAAAAG
22649839 AAAAAA
1 AAAAAA
22649845 AAAGCAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
6 3 0.07
7 31 0.72
8 9 0.21
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:22649823 original size:23 final size:23
Alignment explanation
Indices: 22649797--22649847 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
22649787 GAAAAAAAGG
22649797 AAAAAAG-AAAGAAAAAAAGAAAA
1 AAAAAAGAAAAG-AAAAAAGAAAA
* *
22649820 AAAAGAGAAAAGAGAAAAGAAAA
1 AAAAAAGAAAAGAAAAAAGAAAA
22649843 AAAAA
1 AAAAA
22649848 GCAAAAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAAAGAAAAAAGAAAA
Found at i:22649830 original size:30 final size:30
Alignment explanation
Indices: 22649788--22649845 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
22649778 TAAAGGAAGG
22649788 AAAAAAAGGAAAAAAG-AAAGAAAAAAAGA
1 AAAAAAAGGAAAAAAGAAAAGAAAAAAAGA
*
22649817 AAAAAAAGAGAAAAGAGAAAAGAAAAAAA
1 AAAAAAAG-GAAAAAAGAAAAGAAAAAAA
22649846 AAGCAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.31
30 7 0.27
31 11 0.42
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (30 bp):
AAAAAAAGGAAAAAAGAAAAGAAAAAAAGA
Found at i:22650780 original size:20 final size:20
Alignment explanation
Indices: 22650755--22650879 Score: 81
Period size: 20 Copynumber: 6.5 Consensus size: 20
22650745 CGTTCGAAAC
*
22650755 AATACAAAAAATTATGATAG
1 AATACAAAAAATTATGAGAG
22650775 AATACAAATAAA-TATGAGA-
1 AATACAAA-AAATTATGAGAG
*
22650794 AAGTACAAAAAA-TATAAG-G
1 AA-TACAAAAAATTATGAGAG
*
22650813 AAGTAC-CAAAATTATGAGA-
1 AA-TACAAAAAATTATGAGAG
* * *
22650832 AAGTACCAAAACTTA-GA-TG
1 AA-TACAAAAAATTATGAGAG
*
22650851 --TATAAAAAATTATGAGAG
1 AATACAAAAAATTATGAGAG
22650869 AATACAAAAAA
1 AATACAAAAAA
22650880 AAAAATGAGG
Statistics
Matches: 82, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
16 9 0.11
17 2 0.02
18 5 0.06
19 29 0.35
20 34 0.41
21 3 0.04
ACGTcount: A:0.59, C:0.07, G:0.13, T:0.21
Consensus pattern (20 bp):
AATACAAAAAATTATGAGAG
Found at i:22650808 original size:19 final size:19
Alignment explanation
Indices: 22650757--22650879 Score: 85
Period size: 19 Copynumber: 6.5 Consensus size: 19
22650747 TTCGAAACAA
*
22650757 TACAAAAAATTATGATAGAA-
1 TACAAAAAA-TATGAGA-AAG
22650777 TACAAATAAATATGAGAAAG
1 TACAAA-AAATATGAGAAAG
* *
22650797 TACAAAAAATATAAGGAAG
1 TACAAAAAATATGAGAAAG
* *
22650816 TACCAAAATTATGAGAAAG
1 TACAAAAAATATGAGAAAG
* * *
22650835 TACCAAAACT-T-AG-ATG
1 TACAAAAAATATGAGAAAG
*
22650851 TATAAAAAATTATGAGAGAA-
1 TACAAAAAA-TATGAGA-AAG
22650871 TACAAAAAA
1 TACAAAAAA
22650880 AAAAATGAGG
Statistics
Matches: 82, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
16 8 0.10
17 3 0.04
18 2 0.02
19 39 0.48
20 26 0.32
21 4 0.05
ACGTcount: A:0.59, C:0.07, G:0.13, T:0.21
Consensus pattern (19 bp):
TACAAAAAATATGAGAAAG
Found at i:22650907 original size:20 final size:18
Alignment explanation
Indices: 22650755--22650949 Score: 81
Period size: 19 Copynumber: 10.1 Consensus size: 18
22650745 CGTTCGAAAC
*
22650755 AATACAAAAAATTATGATAG
1 AATAC-AAAAATTATGA-GG
* *
22650775 AATACAAATAAATATGAGA
1 AATACAAA-AATTATGAGG
* *
22650794 AAGTACAAAAAATATAAGG
1 AA-TACAAAAATTATGAGG
* *
22650813 AAGTACCAAAATTATGAGA
1 AA-TACAAAAATTATGAGG
* *
22650832 AAGTACCAAAACTTA-GATG
1 AA-TA-CAAAAATTATGAGG
*
22650851 TATA-AAAAATTATGAGAG
1 AATACAAAAATTATGAG-G
**
22650869 AATACAAAAAAAAAAATGAGG
1 AATAC---AAAAATTATGAGG
22650890 AAGTAGCAAAAATTATGATCGG
1 AA-TA-CAAAAATTATGA--GG
*
22650912 -ATACCAAAAGTTATGAGG
1 AATA-CAAAAATTATGAGG
* *
22650930 GATAGCAAAAAATATGAGG
1 AATA-CAAAAATTATGAGG
22650949 A
1 A
22650950 TGTAAATGTA
Statistics
Matches: 134, Mismatches: 27, Indels: 29
0.71 0.14 0.15
Matches are distributed among these distances:
16 7 0.05
17 2 0.01
18 8 0.06
19 51 0.38
20 47 0.35
21 4 0.03
22 14 0.10
23 1 0.01
ACGTcount: A:0.56, C:0.07, G:0.17, T:0.20
Consensus pattern (18 bp):
AATACAAAAATTATGAGG
Found at i:22650947 original size:19 final size:19
Alignment explanation
Indices: 22650877--22650948 Score: 63
Period size: 20 Copynumber: 3.7 Consensus size: 19
22650867 AGAATACAAA
* *
22650877 AAAAAAAATGAGGAAGTAGC
1 AAAAAATATGAGGGA-TAGC
* * *
22650897 AAAAATTATGATCGGATACC
1 AAAAAATATGA-GGGATAGC
**
22650917 AAAAGTTATGAGGGATAGC
1 AAAAAATATGAGGGATAGC
22650936 AAAAAATATGAGG
1 AAAAAATATGAGG
22650949 ATGTAAATGT
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
19 17 0.41
20 22 0.54
21 2 0.05
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (19 bp):
AAAAAATATGAGGGATAGC
Found at i:22650983 original size:20 final size:22
Alignment explanation
Indices: 22650953--22650998 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
22650943 ATGAGGATGT
22650953 AAATGTATGA-GG-ATACATAAA
1 AAATGTATGAGGGAATAC-TAAA
22650974 AAAT-TATGAGGGAATACTAAA
1 AAATGTATGAGGGAATACTAAA
22650995 AAAT
1 AAAT
22650999 ATTAAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.22
21 14 0.61
22 4 0.17
ACGTcount: A:0.54, C:0.04, G:0.17, T:0.24
Consensus pattern (22 bp):
AAATGTATGAGGGAATACTAAA
Found at i:22651137 original size:19 final size:16
Alignment explanation
Indices: 22651093--22651125 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22651083 AAGTACAAAA
22651093 AAAAATATGAGGATGT
1 AAAAATATGAGGATGT
*
22651109 AAAAATATGATGATGT
1 AAAAATATGAGGATGT
22651125 A
1 A
22651126 CCAAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (16 bp):
AAAAATATGAGGATGT
Found at i:22651151 original size:20 final size:20
Alignment explanation
Indices: 22651128--22651352 Score: 90
Period size: 20 Copynumber: 10.9 Consensus size: 20
22651118 ATGATGTACC
22651128 AAAAATATGAGAGAATACAAAAA
1 AAAAATATGAGAGAATAC---AA
* * * *
22651151 AAAAAAAGGAGTGAATAC-T
1 AAAAATATGAGAGAATACAA
*
22651170 AAAAATATGA-AGAAGTACTA
1 AAAAATATGAGAGAA-TACAA
* *
22651190 AATATTATGAGAGAATATC-A
1 AAAAATATGAGAGAATA-CAA
* ** *
22651210 TAAAACCTGAG-GAAGTAC-C
1 AAAAATATGAGAGAA-TACAA
22651229 AAAAA-ATGAGA-AAGTACAA
1 AAAAATATGAGAGAA-TACAA
*
22651248 AAAATTATGAGAGAATACAACCA
1 AAAAATATGAGAGAATAC-A--A
22651271 AAAAATTATGAGAGAATACACA
1 AAAAA-TATGAGAGAATACA-A
*
22651293 AAAAATAT-ATGAAAATGTACAA
1 AAAAATATGA-GAGAA--TACAA
* **
22651315 AAAATTATGAG-GAAGTGTAA
1 AAAAATATGAGAGAA-TACAA
*
22651335 AAAATTATGAGAGAATAC
1 AAAAATATGAGAGAATAC
22651353 CAAATAACAT
Statistics
Matches: 156, Mismatches: 28, Indels: 39
0.70 0.13 0.17
Matches are distributed among these distances:
18 13 0.08
19 23 0.15
20 45 0.29
21 20 0.13
22 16 0.10
23 26 0.17
24 13 0.08
ACGTcount: A:0.58, C:0.07, G:0.16, T:0.19
Consensus pattern (20 bp):
AAAAATATGAGAGAATACAA
Found at i:22651155 original size:58 final size:57
Alignment explanation
Indices: 22651034--22651206 Score: 141
Period size: 58 Copynumber: 2.9 Consensus size: 57
22651024 AGAATTCCAT
* * * * * *
22651034 AAAACATGAGGAAGTATAAAACAATGAGGATGTACCAATAAATTTGGGA-AAGTACAAAAA
1 AAAAAATGAGGATGTA-AAAA-TATGAAGATGTACCAA-AAATATGAGAGAA-TACAAAAA
* *
22651094 AAAATATGAGGATGTAAAAATATGATGATGTACCAAAAATATGAGAGAATACAAAAAA
1 AAAAAATGAGGATGTAAAAATATGAAGATGTACCAAAAATATGAGAGAATAC-AAAAA
* * * * *
22651152 AAAAAAGGAGTGAATACTAAAAATATGAAGAAGTACTAAATATTATGAGAGAATA
1 AAAAAATGAG-G-AT-GTAAAAATATGAAGATGTACCAAA-AATATGAGAGAATA
22651207 TCATAAAACC
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
57 11 0.12
58 29 0.31
59 5 0.05
60 16 0.17
61 20 0.21
62 13 0.14
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.20
Consensus pattern (57 bp):
AAAAAATGAGGATGTAAAAATATGAAGATGTACCAAAAATATGAGAGAATACAAAAA
Found at i:22651250 original size:17 final size:18
Alignment explanation
Indices: 22651217--22651252 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
22651207 TCATAAAACC
*
22651217 TGAGGAAGTACCAAAAAA
1 TGAGAAAGTACCAAAAAA
22651235 TGAGAAAGTA-CAAAAAA
1 TGAGAAAGTACCAAAAAA
22651252 T
1 T
22651253 TATGAGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.58, C:0.08, G:0.19, T:0.14
Consensus pattern (18 bp):
TGAGAAAGTACCAAAAAA
Found at i:22651277 original size:24 final size:22
Alignment explanation
Indices: 22651244--22651356 Score: 112
Period size: 24 Copynumber: 5.2 Consensus size: 22
22651234 ATGAGAAAGT
22651244 ACAAAAAATTATGAGAGAATAC
1 ACAAAAAATTATGAGAGAATAC
22651266 AACCAAAAAATTATGAGAGAATAC
1 -A-CAAAAAATTATGAGAGAATAC
**
22651290 ACAAAAAATATATGA-A-AATGT
1 ACAAAAAAT-TATGAGAGAATAC
22651311 ACAAAAAATTATGAG-GAAGT--
1 ACAAAAAATTATGAGAGAA-TAC
**
22651331 GTAAAAAATTATGAGAGAATAC
1 ACAAAAAATTATGAGAGAATAC
22651353 -CAAA
1 ACAAA
22651357 TAACATAAGA
Statistics
Matches: 77, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
20 19 0.25
21 20 0.26
22 10 0.13
23 7 0.09
24 21 0.27
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.19
Consensus pattern (22 bp):
ACAAAAAATTATGAGAGAATAC
Found at i:22651337 original size:21 final size:21
Alignment explanation
Indices: 22651217--22651350 Score: 93
Period size: 20 Copynumber: 6.4 Consensus size: 21
22651207 TCATAAAACC
*
22651217 TGAGGAA-GTACCAAAAA--A
1 TGAGGAATGTACAAAAAATTA
*
22651235 TGA-GAAAGTACAAAAAATTA
1 TGAGGAATGTACAAAAAATTA
**
22651255 TGAGAGAATACAACCAAAAAATTA
1 TGAG-GAAT-GTA-CAAAAAATTA
**
22651279 TGAGAGAATACACAAAAAATATA
1 TGAG-GAATGTACAAAAAAT-TA
*
22651302 TGA-AAATGTACAAAAAATTA
1 TGAGGAATGTACAAAAAATTA
22651322 TGAGGAAGTGT--AAAAAATTA
1 TGAGGAA-TGTACAAAAAATTA
22651342 TGAGAGAAT
1 TGAG-GAAT
22651351 ACCAAATAAC
Statistics
Matches: 95, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.03
18 12 0.13
20 23 0.24
21 17 0.18
22 14 0.15
23 7 0.07
24 19 0.20
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.19
Consensus pattern (21 bp):
TGAGGAATGTACAAAAAATTA
Found at i:22662153 original size:21 final size:21
Alignment explanation
Indices: 22662129--22662184 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
22662119 CACCATTGTT
*
22662129 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
22662150 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
22662171 ACTAATCTCACCGC
1 TCTAATCTCACCGC
22662185 CACCGCTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:22664644 original size:48 final size:48
Alignment explanation
Indices: 22664573--22664730 Score: 203
Period size: 49 Copynumber: 3.2 Consensus size: 48
22664563 GAACTTGTAC
*
22664573 ATTCTACCATCCTGGTTGGCCCGACAACGATTGCTTTCACTA-CTGCAT
1 ATTCTACCATCCTGG-TGGCCCGACAACGATTGCTTTCACTATTTGCAT
* *
22664621 ATTCTACCATCCCAGGTGGCCCGACAACGATAGCTTTCACTATTTGCAT
1 ATTCTACCAT-CCTGGTGGCCCGACAACGATTGCTTTCACTATTTGCAT
* * * *
22664670 ATTCTACCATCCTGAATGGCTCGACAATGA-TGATTTCCACTATTTGCAT
1 ATTCTACCATCCTG-GTGGCCCGACAACGATTGCTTT-CACTATTTGCAT
22664719 ATTCTACCATCC
1 ATTCTACCATCC
22664731 CGAGTGACCC
Statistics
Matches: 97, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
48 42 0.43
49 55 0.57
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.32
Consensus pattern (48 bp):
ATTCTACCATCCTGGTGGCCCGACAACGATTGCTTTCACTATTTGCAT
Found at i:22666885 original size:41 final size:41
Alignment explanation
Indices: 22666848--22666993 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
22666838 GACTATACGT
22666848 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
*
22666889 CTAGCAGGCTAAGTGCCGGTAAACTGAATCAGGCTATAGGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
* * ** *
22666930 CTAGCAGGCTAAGTGCCGGTGAACGGAATTAAACTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
* *
22666971 CTATCAGG-TGAAGTGCCAGTGAA
1 CTAGCAGGCT-AAGTGCCGGTGAA
22666994 TCTGTTTAAA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 1 0.01
41 94 0.99
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.20
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
Found at i:22667966 original size:49 final size:49
Alignment explanation
Indices: 22667894--22668108 Score: 268
Period size: 49 Copynumber: 4.4 Consensus size: 49
22667884 CGGTGTTACA
* * * *
22667894 CCGACAACGATGTTTTTCACTATTTGCATATTTTACCATCTTGGGTGGC
1 CCGACAACGATGGTTTTCACTATTTACATATTCTACCATCCTGGGTGGC
* **
22667943 CCGACAACGATGGTTTTCACTATTTGCATATTCTACCATCCCAGGTGGC
1 CCGACAACGATGGTTTTCACTATTTACATATTCTACCATCCTGGGTGGC
* * * * *
22667992 TCGATAACGATAGTTTTCAGTATTTACATATTCTACCATCTTGGGTGGC
1 CCGACAACGATGGTTTTCACTATTTACATATTCTACCATCCTGGGTGGC
* * * *
22668041 ACGACAACAATGGCTTTCACTATTTACATATTCTACCATCCTGAGTGGC
1 CCGACAACGATGGTTTTCACTATTTACATATTCTACCATCCTGGGTGGC
**
22668090 CTAACAACGATGGTTTTCA
1 CCGACAACGATGGTTTTCA
22668109 ATCACTATAT
Statistics
Matches: 140, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 140 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (49 bp):
CCGACAACGATGGTTTTCACTATTTACATATTCTACCATCCTGGGTGGC
Found at i:22671957 original size:12 final size:12
Alignment explanation
Indices: 22671929--22671972 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
22671919 ATGTTATTTT
*
22671929 ATAATAAAA-AC
1 ATAATAAAAGAA
22671940 ATAATAAAAGAA
1 ATAATAAAAGAA
**
22671952 ATAATAAAAGTT
1 ATAATAAAAGAA
22671964 ATAATAAAA
1 ATAATAAAA
22671973 AAAAGAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 9 0.31
12 20 0.69
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (12 bp):
ATAATAAAAGAA
Found at i:22680206 original size:15 final size:17
Alignment explanation
Indices: 22680166--22680207 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
22680156 AAAAATGTTT
*
22680166 TGAGACTCACATGGCCG
1 TGAGACTCACACGGCCG
*
22680183 TGTGACTCACACGG-C-
1 TGAGACTCACACGGCCG
22680198 TGAGACTCAC
1 TGAGACTCAC
22680208 GCCCGTGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 1 0.05
17 12 0.55
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (17 bp):
TGAGACTCACACGGCCG
Found at i:22683665 original size:27 final size:27
Alignment explanation
Indices: 22683624--22683712 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
22683614 TTGTTACAAC
* **
22683624 TATTCTTTTAGAGTTCGCCATGAAGGT
1 TATTCTTTTATAGTTCGCCACAAAGGT
* *
22683651 TATTCTTTTTTAGTTCGCCACAAAGGC
1 TATTCTTTTATAGTTCGCCACAAAGGT
* *
22683678 TATTCTTTCATAGTTCGCAACAAAGGT
1 TATTCTTTTATAGTTCGCCACAAAGGT
22683705 TATTCTTT
1 TATTCTTT
22683713 CATGTCATGT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.43
Consensus pattern (27 bp):
TATTCTTTTATAGTTCGCCACAAAGGT
Found at i:22684461 original size:49 final size:50
Alignment explanation
Indices: 22684384--22684484 Score: 168
Period size: 49 Copynumber: 2.0 Consensus size: 50
22684374 CAATAACAAC
* *
22684384 CACTGATTTGCATATTCTACCATCCTGGGTGGCCTGACAATGATGGTTTT
1 CACTGATTTGCATATTCTACCATCCTGGGTGGCCTGACAACGATGATTTT
*
22684434 CACT-ATTTGCATATTCTACCATTCTGGGTGGCCTGACAACGATGATTTT
1 CACTGATTTGCATATTCTACCATCCTGGGTGGCCTGACAACGATGATTTT
22684483 CA
1 CA
22684485 ATCACTATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 44 0.92
50 4 0.08
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (50 bp):
CACTGATTTGCATATTCTACCATCCTGGGTGGCCTGACAACGATGATTTT
Found at i:22698632 original size:16 final size:17
Alignment explanation
Indices: 22698611--22698644 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
22698601 CTAACTTTAT
22698611 GAAAAAAAA-TATTGTA
1 GAAAAAAAATTATTGTA
22698627 GAAAAAAAATTATTGTA
1 GAAAAAAAATTATTGTA
22698644 G
1 G
22698645 CCATTCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (17 bp):
GAAAAAAAATTATTGTA
Found at i:22698634 original size:17 final size:17
Alignment explanation
Indices: 22698612--22698644 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22698602 TAACTTTATG
22698612 AAAAAAAATATTGTAGA
1 AAAAAAAATATTGTAGA
*
22698629 AAAAAAATTATTGTAG
1 AAAAAAAATATTGTAG
22698645 CCATTCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (17 bp):
AAAAAAAATATTGTAGA
Found at i:22698846 original size:23 final size:22
Alignment explanation
Indices: 22698801--22698846 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
22698791 ACTTATTAAA
*
22698801 ATTTTTAAAAATTAAAAGTATT
1 ATTTTTAAAAATTAAAAATATT
22698823 ATTTTTAAAAATTAAAAATCATT
1 ATTTTTAAAAATTAAAAAT-ATT
22698846 A
1 A
22698847 AAATTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTTTTAAAAATTAAAAATATT
Found at i:22702013 original size:20 final size:19
Alignment explanation
Indices: 22701988--22702035 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
22701978 AGGATAAATT
22701988 AAAAAAAATGA-AGAAATACC
1 AAAAAAAATGAGAG-AATA-C
*
22702008 AAAAAAATTGAGAGAATAC
1 AAAAAAAATGAGAGAATAC
22702027 AAAAAAAAT
1 AAAAAAAAT
22702036 AAAAGAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 9 0.36
20 14 0.56
21 2 0.08
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.12
Consensus pattern (19 bp):
AAAAAAAATGAGAGAATAC
Found at i:22702691 original size:39 final size:37
Alignment explanation
Indices: 22702648--22702759 Score: 111
Period size: 36 Copynumber: 3.0 Consensus size: 37
22702638 ATTTATAAGA
*
22702648 AAGTACCAAAATTTATGAGCGAATACAAAAACGATGAGG
1 AAGTACCAAAAATTATGAG-GAATACAAAAA-GATGAGG
* ** * *
22702687 AAGTACCAAAAGTTATGAGG-ATGTAAATATATGAGG
1 AAGTACCAAAAATTATGAGGAATACAAAAAGATGAGG
* *
22702723 ATGCACCAAAAATTATGAGGGAATACAAAAA-ATGAGG
1 AAGTACCAAAAATTATGA-GGAATACAAAAAGATGAGG
22702760 GGATACTAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
36 21 0.35
37 14 0.23
38 7 0.12
39 18 0.30
ACGTcount: A:0.48, C:0.10, G:0.22, T:0.20
Consensus pattern (37 bp):
AAGTACCAAAAATTATGAGGAATACAAAAAGATGAGG
Found at i:22702697 original size:19 final size:21
Alignment explanation
Indices: 22702648--22702697 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 21
22702638 ATTTATAAGA
**
22702648 AAGTACCAAAATTTATGAGCG
1 AAGTACCAAAATCGATGAGCG
*
22702669 AA-TA-CAAAAACGATGAG-G
1 AAGTACCAAAATCGATGAGCG
22702687 AAGTACCAAAA
1 AAGTACCAAAA
22702698 GTTATGAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 3 0.12
19 12 0.50
20 7 0.29
21 2 0.08
ACGTcount: A:0.52, C:0.14, G:0.18, T:0.16
Consensus pattern (21 bp):
AAGTACCAAAATCGATGAGCG
Found at i:22702704 original size:20 final size:20
Alignment explanation
Indices: 22702628--22702707 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 20
22702618 AAATACAAGT
* * * *
22702628 AAGTACCCAAATTTATAAGA
1 AAGTACCAAAAGTTATGAGG
*
22702648 AAGTACCAAAATTTATGAGCG
1 AAGTACCAAAAGTTATGAG-G
*
22702669 AA-TACAAAAACG--ATGAGG
1 AAGTACCAAAA-GTTATGAGG
22702687 AAGTACCAAAAGTTATGAGG
1 AAGTACCAAAAGTTATGAGG
22702707 A
1 A
22702708 TGTAAATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
18 4 0.08
19 12 0.24
20 31 0.63
21 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (20 bp):
AAGTACCAAAAGTTATGAGG
Found at i:22702753 original size:20 final size:18
Alignment explanation
Indices: 22702729--22702771 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 18
22702719 GAGGATGCAC
22702729 CAAAAATTATGAGGGAATA
1 CAAAAA-TATGAGGGAATA
*
22702748 CAAAAA-ATGAGGGGATA
1 CAAAAATATGAGGGAATA
22702765 CTAAAAA
1 C-AAAAA
22702772 ATATTAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
18 5 0.23
19 6 0.27
ACGTcount: A:0.56, C:0.07, G:0.21, T:0.16
Consensus pattern (18 bp):
CAAAAATATGAGGGAATA
Found at i:22702759 original size:17 final size:18
Alignment explanation
Indices: 22702737--22702773 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22702727 ACCAAAAATT
22702737 ATGAGGGAATAC-AAAAA
1 ATGAGGGAATACTAAAAA
*
22702754 ATGAGGGGATACTAAAAA
1 ATGAGGGAATACTAAAAA
22702772 AT
1 AT
22702774 ATTAGAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.54, C:0.05, G:0.24, T:0.16
Consensus pattern (18 bp):
ATGAGGGAATACTAAAAA
Found at i:22702806 original size:20 final size:20
Alignment explanation
Indices: 22702727--22702812 Score: 72
Period size: 20 Copynumber: 4.4 Consensus size: 20
22702717 ATGAGGATGC
*
22702727 ACCAAAAATTATGAGGGAAT
1 ACCAAAAATTATGAGAGAAT
* *
22702747 A-CAAAAA--ATGAGGGGAT
1 ACCAAAAATTATGAGAGAAT
* * *
22702764 ACTAAAAAATATTAGA-AAGT
1 ACCAAAAATTATGAGAGAA-T
22702784 ACCAAAAATTATGAGAGAAT
1 ACCAAAAATTATGAGAGAAT
22702804 ACCATAAAA
1 ACCA-AAAA
22702813 CTTGAGGAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
17 10 0.19
18 5 0.10
19 7 0.13
20 24 0.46
21 6 0.12
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (20 bp):
ACCAAAAATTATGAGAGAAT
Found at i:22702905 original size:152 final size:151
Alignment explanation
Indices: 22702702--22702989 Score: 395
Period size: 152 Copynumber: 1.9 Consensus size: 151
22702692 CCAAAAGTTA
* * * * *
22702702 TGAGGATGTAAATATATGAGGATGCACCAAAAATTATGAGGGAATACAAAAA-ATGAGGGGATAC
1 TGAGGACGTAAAAATATGAGGATGCACCAAAAATTATGAGAGAATAAAAAAACACGAGGGGATA-
* *
22702766 TAAAAAATATTA-GAAAGTACCAAAAATTATGAGAGAATACCATAAAACTTGAGGAAGTA-TAAA
65 TAAAAAATATGATG-AAGTACCAAAAATTATGAGAGAATACCATAAAACTTGAGGAAGTACCAAA
22702829 AAAATGAGGATGTACCGATAATT
129 AAAATGAGGATGTACCGATAATT
* *
22702852 TGAGGACGTAAAAATATGATGATGTACCAAAAA-TATGAGAGAATGCCAAAAAAACACGAGGGGA
1 TGAGGACGTAAAAATATGAGGATGCACCAAAAATTATGAGAGAAT---AAAAAAACACGAGGGGA
* * *
22702916 TATTAAAAATATGATGAAGTACTAAATATTATGAGAGAATACCATAAAACTTGAGGAAGTACCAA
63 TATAAAAAATATGATGAAGTACCAAAAATTATGAGAGAATACCATAAAACTTGAGGAAGTACCAA
22702981 AAAAATGAG
128 AAAAATGAG
22702990 AAAGTACAAA
Statistics
Matches: 120, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
149 10 0.08
150 29 0.24
152 59 0.49
153 22 0.18
ACGTcount: A:0.50, C:0.09, G:0.20, T:0.21
Consensus pattern (151 bp):
TGAGGACGTAAAAATATGAGGATGCACCAAAAATTATGAGAGAATAAAAAAACACGAGGGGATAT
AAAAAATATGATGAAGTACCAAAAATTATGAGAGAATACCATAAAACTTGAGGAAGTACCAAAAA
AATGAGGATGTACCGATAATT
Found at i:22702999 original size:18 final size:19
Alignment explanation
Indices: 22702967--22703002 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22702957 CCATAAAACT
*
22702967 TGAGGAAGTACCAAAAAAA
1 TGAGAAAGTACCAAAAAAA
22702986 TGAGAAAGTA-CAAAAAA
1 TGAGAAAGTACCAAAAAA
22703003 TTATGAGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.61, C:0.08, G:0.19, T:0.11
Consensus pattern (19 bp):
TGAGAAAGTACCAAAAAAA
Found at i:22703008 original size:20 final size:20
Alignment explanation
Indices: 22702920--22703010 Score: 66
Period size: 20 Copynumber: 4.6 Consensus size: 20
22702910 AGGGGATATT
*
22702920 AAAAATATGATG-AAGTACTA
1 AAAAATATGA-GAAAGTACCA
* *
22702940 AATATTATGAGAGAA-TACCA
1 AAAAATATGAGA-AAGTACCA
* *
22702960 TAAAACT-TGAGGAAGTACCA
1 -AAAAATATGAGAAAGTACCA
22702980 AAAAA-ATGAGAAAGTA-CA
1 AAAAATATGAGAAAGTACCA
22702998 AAAAATTATGAGA
1 AAAAA-TATGAGA
22703011 GTGTAACACT
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
18 7 0.12
19 16 0.29
20 27 0.48
21 6 0.11
ACGTcount: A:0.55, C:0.08, G:0.16, T:0.21
Consensus pattern (20 bp):
AAAAATATGAGAAAGTACCA
Found at i:22703716 original size:34 final size:34
Alignment explanation
Indices: 22703678--22703742 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
22703668 CACATGTCAA
22703678 ATCAAAATGTCATATTTCCAGAAACATATACTGG
1 ATCAAAATGTCATATTTCCAGAAACATATACTGG
*
22703712 ATCAAAATGTCATATTTTCAGAAACATATAC
1 ATCAAAATGTCATATTTCCAGAAACATATAC
22703743 CATAGCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (34 bp):
ATCAAAATGTCATATTTCCAGAAACATATACTGG
Found at i:22703752 original size:34 final size:34
Alignment explanation
Indices: 22703680--22703759 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 34
22703670 CATGTCAAAT
** *
22703680 CAAAATGTCATATTTCCAGAAACATATACTGGAT
1 CAAAATGTCATATTTCCAGAAACATATACCAGAG
* *
22703714 CAAAATGTCATATTTTCAGAAACATATACCATAG
1 CAAAATGTCATATTTCCAGAAACATATACCAGAG
22703748 CAAAATGTCATA
1 CAAAATGTCATA
22703760 ACATATCAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (34 bp):
CAAAATGTCATATTTCCAGAAACATATACCAGAG
Found at i:22704943 original size:19 final size:18
Alignment explanation
Indices: 22704919--22705026 Score: 82
Period size: 19 Copynumber: 5.9 Consensus size: 18
22704909 TTTTTTTATA
22704919 TTTTTAATTTTAAAATACT
1 TTTTTAATTTTAAAATA-T
22704938 TTTTTAATTTTAAAATAT
1 TTTTTAATTTTAAAATAT
* **
22704956 TTTTAAAATACCTTTTTAAT-T
1 TTTT-TAAT---TTTAAAATAT
22704977 TTTTTAATTTTAAAATA-
1 TTTTTAATTTTAAAATAT
**
22704994 TTTTTAA-AAT-AAAT-T
1 TTTTTAATTTTAAAATAT
22705009 TTTTTAATTTTTAAAATA
1 TTTTTAA-TTTTAAAATA
22705027 AATTTTTGGT
Statistics
Matches: 69, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
15 11 0.16
16 1 0.01
17 14 0.20
18 9 0.13
19 20 0.29
20 3 0.04
21 5 0.07
22 6 0.09
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTTAATTTTAAAATAT
Found at i:22705011 original size:39 final size:40
Alignment explanation
Indices: 22704937--22705020 Score: 134
Period size: 39 Copynumber: 2.1 Consensus size: 40
22704927 TTTAAAATAC
**
22704937 TTTTTTAATTTTAAAATATTTTTAAAAT-ACCTTTTTAAT
1 TTTTTTAATTTTAAAATATTTTTAAAATAAATTTTTTAAT
22704976 TTTTTTAATTTTAAAATATTTTTAAAATAAATTTTTTTAAT
1 TTTTTTAATTTTAAAATATTTTTAAAATAAA-TTTTTTAAT
22705017 TTTT
1 TTTT
22705021 AAAATAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 28 0.68
40 1 0.02
41 12 0.29
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (40 bp):
TTTTTTAATTTTAAAATATTTTTAAAATAAATTTTTTAAT
Found at i:22705040 original size:22 final size:21
Alignment explanation
Indices: 22704992--22705040 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 21
22704982 AATTTTAAAA
*
22704992 TATTTTTAAAATAAATTTTTT
1 TATTTTTAAAATAAATTTTTG
22705013 TAATTTTTAAAATAAATTTTTGG
1 T-ATTTTTAAAATAAATTTTT-G
22705036 TATTT
1 TATTT
22705041 ATTTAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTG
Found at i:22705696 original size:15 final size:15
Alignment explanation
Indices: 22705678--22705712 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
22705668 TGGTTTAAAT
22705678 TTATATATTATCATC
1 TTATATATTATCATC
*
22705693 TTATATATTATTATC
1 TTATATATTATCATC
22705708 -TATAT
1 TTATAT
22705713 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATATTATCATC
Found at i:22706562 original size:107 final size:107
Alignment explanation
Indices: 22706376--22706581 Score: 331
Period size: 107 Copynumber: 1.9 Consensus size: 107
22706366 AGGAAAATTT
* ** * **
22706376 TTTCAAAACGAGGCAATGTTTTGTTTTTAGAAAATCGAGAAAATGTGCCCTAACGTGTTGGGTTT
1 TTTCAAAAAGAGGCAATGTTTTGCGTTTAGAAAATCGAGAAAACGTGCCCTAACGTACTGGGTTT
22706441 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTCAATAA
66 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTCAATAA
* *
22706483 TTTCAAAAAGAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTACTGGGTTT
1 TTTCAAAAAGAGGCAATGTTTTGCGTTTAGAAAATCGAGAAAACGTGCCCTAACGTACTGGGTTT
*
22706548 CGATTTCTCGTTCGACTAAATAGCCAAATATCCT
66 CGATTTCTCGTTCGACCAAATAGCCAAATATCCT
22706582 CTTAAAACTT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 90 1.00
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (107 bp):
TTTCAAAAAGAGGCAATGTTTTGCGTTTAGAAAATCGAGAAAACGTGCCCTAACGTACTGGGTTT
CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTCAATAA
Found at i:22707896 original size:76 final size:76
Alignment explanation
Indices: 22707770--22707919 Score: 291
Period size: 76 Copynumber: 2.0 Consensus size: 76
22707760 TATAAATTCG
22707770 ATATTATTTTGACTTAATTTAAGCATTATAAAAAGGGAGATAACCTAGCATAAGTCTTTCTCCAA
1 ATATTATTTTGACTTAATTTAAGCATTATAAAAAGGGAGATAACCTAGCATAAGTCTTTCTCCAA
*
22707835 ATTAAGTTTCA
66 AGTAAGTTTCA
22707846 ATATTATTTTGACTTAATTTAAGCATTATAAAAAGGGAGATAACCTAGCATAAGTCTTTCTCCAA
1 ATATTATTTTGACTTAATTTAAGCATTATAAAAAGGGAGATAACCTAGCATAAGTCTTTCTCCAA
22707911 AGTAAGTTT
66 AGTAAGTTT
22707920 ATATAAGTTC
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37
Consensus pattern (76 bp):
ATATTATTTTGACTTAATTTAAGCATTATAAAAAGGGAGATAACCTAGCATAAGTCTTTCTCCAA
AGTAAGTTTCA
Found at i:22734907 original size:12 final size:12
Alignment explanation
Indices: 22734890--22734919 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
22734880 GAGGATGACC
22734890 AAAAGAAGAAAA
1 AAAAGAAGAAAA
22734902 AAAAGAAGAAAA
1 AAAAGAAGAAAA
22734914 ACAAAG
1 A-AAAG
22734920 CTGTTACAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAAA
Found at i:22747553 original size:33 final size:33
Alignment explanation
Indices: 22747516--22747580 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
22747506 CCTTCCCTTT
*
22747516 TCCATA-AGGTAGAAAGCTGGTTTTTGTCATTTC
1 TCCATAGA-GTAGAAAGCTGGGTTTTGTCATTTC
*
22747549 TCCATAGAGTAGAAAGTTGGGTTTTGTCATTT
1 TCCATAGAGTAGAAAGCTGGGTTTTGTCATTT
22747581 TAGATTACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (33 bp):
TCCATAGAGTAGAAAGCTGGGTTTTGTCATTTC
Found at i:22750886 original size:17 final size:17
Alignment explanation
Indices: 22750864--22750897 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22750854 ATCAAACTCA
22750864 TCTGTCATAATTCTAAG
1 TCTGTCATAATTCTAAG
22750881 TCTGTCATAATTCTAAG
1 TCTGTCATAATTCTAAG
22750898 GCAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
TCTGTCATAATTCTAAG
Found at i:22758576 original size:11 final size:10
Alignment explanation
Indices: 22758562--22758635 Score: 52
Period size: 11 Copynumber: 7.5 Consensus size: 10
22758552 TATCTTGAAT
22758562 TTTTTAGATAA
1 TTTTTA-ATAA
22758573 TTTTTAAT-A
1 TTTTTAATAA
22758582 TTTTT--T-A
1 TTTTTAATAA
22758589 TTTTTATATAA
1 TTTTTA-ATAA
*
22758600 TCTTT-ATAA
1 TTTTTAATAA
22758609 TATTTTACA-AA
1 T-TTTTA-ATAA
22758620 TTTTTAATAA
1 TTTTTAATAA
22758630 TATTTT
1 T-TTTT
22758636 TTTAAAAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
7 7 0.13
9 12 0.23
10 14 0.27
11 18 0.35
12 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:22758615 original size:27 final size:26
Alignment explanation
Indices: 22758562--22758614 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 26
22758552 TATCTTGAAT
22758562 TTTTTAGATAATTTTTAATATTTTTTA
1 TTTTTAGATAATTTTTAATA-TTTTTA
*
22758589 TTTTTATATAATCTTTATAATATTTT
1 TTTTTAGATAAT-TTT-TAATATTTT
22758615 ACAAATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 7 0.30
29 5 0.22
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTTTAGATAATTTTTAATATTTTTA
Found at i:22760983 original size:72 final size:72
Alignment explanation
Indices: 22760866--22761002 Score: 215
Period size: 72 Copynumber: 1.9 Consensus size: 72
22760856 GGCTCACGGG
*
22760866 TCAACGAGTCTAATGCCTCTATCTAAATTGATACCTAAATCAATTCTCGATCCAA-TCAATTTAA
1 TCAACGAGTCTAATGCCTCTATCTAAATTGATACCTAAACCAATTCTCGATCCAACT-AATTTAA
22760930 CTAGCAGA
65 CTAGCAGA
* *
22760938 TCAACGAGTCTAATATCC-CTCTCTAAATTGATACCTAAACCAATTCTCGATCCAACTAATTTAA
1 TCAACGAGTCTAAT-GCCTCTATCTAAATTGATACCTAAACCAATTCTCGATCCAACTAATTTAA
22761002 C
65 C
22761003 AATTCGAACA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 57 0.95
73 3 0.05
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.31
Consensus pattern (72 bp):
TCAACGAGTCTAATGCCTCTATCTAAATTGATACCTAAACCAATTCTCGATCCAACTAATTTAAC
TAGCAGA
Found at i:22769883 original size:35 final size:35
Alignment explanation
Indices: 22769748--22769914 Score: 212
Period size: 34 Copynumber: 4.8 Consensus size: 35
22769738 CTTTGTTGGT
*
22769748 GTGTTTCGGGTGGATTAGCTCTTATGAGCACACTGGT
1 GTGTTTCGGGTGGATTAGCTCTTATGAG--CACTGGC
* *
22769785 GTGTTTCGAG-GGATTAGTTCTTATGAGCACTGGC
1 GTGTTTCGGGTGGATTAGCTCTTATGAGCACTGGC
** * *
22769819 GTGTTTCAAG-GGTTTAGTTCTTATGAGCACTGGC
1 GTGTTTCGGGTGGATTAGCTCTTATGAGCACTGGC
22769853 GTGTTTCGGGTGGATTAGCTCTTATGAGCACTGGC
1 GTGTTTCGGGTGGATTAGCTCTTATGAGCACTGGC
* * *
22769888 GTATATCAGGTGGATTAGCTCTTATGA
1 GTGTTTCGGGTGGATTAGCTCTTATGA
22769915 ACATCGGCGT
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
34 46 0.39
35 46 0.39
36 16 0.14
37 9 0.08
ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36
Consensus pattern (35 bp):
GTGTTTCGGGTGGATTAGCTCTTATGAGCACTGGC
Found at i:22787452 original size:24 final size:24
Alignment explanation
Indices: 22787425--22787476 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
22787415 AATCAAAGTC
* *
22787425 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
22787449 AAATATATTGTACTCATAAATACT
1 AAATATATTATACTAATAAATACT
22787473 AAAT
1 AAAT
22787477 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:22792472 original size:19 final size:19
Alignment explanation
Indices: 22792431--22792473 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
22792421 AATCCAAAAC
* * **
22792431 CAAAACAGTCCCAAAATGT
1 CAAAACAATCCAAAAATAA
22792450 CAAAACAATCCAAAAATAA
1 CAAAACAATCCAAAAATAA
22792469 CAAAA
1 CAAAA
22792474 TGTGATAACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.60, C:0.23, G:0.05, T:0.12
Consensus pattern (19 bp):
CAAAACAATCCAAAAATAA
Found at i:22792659 original size:41 final size:41
Alignment explanation
Indices: 22792602--22792683 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
22792592 GTGAGTTTCG
*
22792602 AAACTCAGTGTGTAACATATCATATTATCAACAGAAGAAAA
1 AAACTCAGTGTGTAACACATCATATTATCAACAGAAGAAAA
22792643 AAACTCAGTGTGTAACACATCATATTATCAACAGAAGAAAA
1 AAACTCAGTGTGTAACACATCATATTATCAACAGAAGAAAA
22792684 TCAGATATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.49, C:0.16, G:0.12, T:0.23
Consensus pattern (41 bp):
AAACTCAGTGTGTAACACATCATATTATCAACAGAAGAAAA
Found at i:22793454 original size:26 final size:25
Alignment explanation
Indices: 22793408--22793456 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
22793398 TAATGGGTTG
* **
22793408 AAAATATAGAGATAATTCTATTTCT
1 AAAATATAGAGACAAACCTATTTCT
22793433 AAAATTATAGAGACAAACCTATTT
1 AAAA-TATAGAGACAAACCTATTT
22793457 ATAGCATGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (25 bp):
AAAATATAGAGACAAACCTATTTCT
Found at i:22794280 original size:24 final size:23
Alignment explanation
Indices: 22794240--22794298 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
22794230 AACATTATTC
* *
22794240 CTGAACATGTTTAATTATATGTTCA
1 CTGAACATGTTCAATTA-A-GTTAA
*
22794265 -TGAACATGTTCGATTAAGTTAA
1 CTGAACATGTTCAATTAAGTTAA
22794287 CTGAACATGTTC
1 CTGAACATGTTC
22794299 TTGAACATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 4 0.13
23 12 0.40
24 14 0.47
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (23 bp):
CTGAACATGTTCAATTAAGTTAA
Found at i:22795123 original size:20 final size:21
Alignment explanation
Indices: 22795098--22795139 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
22795088 AAGGTTTTTA
22795098 TTTTATTAGAG-TTAGGGTTT
1 TTTTATTAGAGTTTAGGGTTT
*
22795118 TTTTATTAGGGTTTAGGGTTT
1 TTTTATTAGAGTTTAGGGTTT
22795139 T
1 T
22795140 ATAAAAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.17, C:0.00, G:0.26, T:0.57
Consensus pattern (21 bp):
TTTTATTAGAGTTTAGGGTTT
Found at i:22798209 original size:23 final size:22
Alignment explanation
Indices: 22798168--22798266 Score: 90
Period size: 23 Copynumber: 4.3 Consensus size: 22
22798158 ATATGTAGCT
* * *
22798168 GCTACCATTGATATATAGCCATA
1 GCTACCACTGAAATGTAGCCA-A
*
22798191 GCTACCACTGAAATGTAGCTGAA
1 GCTACCACTGAAATGTAGC-CAA
*
22798214 GCTACCACTGAAATGTAGCTGAA
1 GCTACCACTGAAATGTAGC-CAA
* *
22798237 GCTATCGCTGAAATGTAGCCGAA
1 GCTACCACTGAAATGTAGCC-AA
*
22798260 ACTACCA
1 GCTACCA
22798267 TTGGTCAATA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
23 63 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (22 bp):
GCTACCACTGAAATGTAGCCAA
Found at i:22799687 original size:45 final size:45
Alignment explanation
Indices: 22799618--22799703 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
22799608 AGATACTCGA
* *
22799618 TGGATTCAGCACATAGCAACCACCTTAGTAATCAATGATGTCTAG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTAG
*
22799663 TGGAATCAGCACGTAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
22799704 TTGGTTCACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCTAG
Found at i:22799837 original size:50 final size:49
Alignment explanation
Indices: 22799711--22799898 Score: 182
Period size: 50 Copynumber: 3.8 Consensus size: 49
22799701 TGTTTGGTTC
* **
22799711 ACATAGTAGCCTACACATAGTACTACACATGTGACCATTACCATCCGAT
1 ACATAGTAGCCTGCACATAGTACTACACATGTGACCAGAACCATCCGAT
* * * * *
22799760 ACATGTAGTAGCCTGCACATAGAACTACACACGTGATCAGAACTATCCGGT
1 ACA--TAGTAGCCTGCACATAGTACTACACATGTGACCAGAACCATCCGAT
* * * *
22799811 CGCATAGTAGCCTGCACATAGTACTACACATGTGACC--TATCATTCTGAT
1 -ACATAGTAGCCTGCACATAGTACTACACATGTGACCAGAACCA-TCCGAT
* *
22799860 ACACGTAGTAGCCTGCACATAGTACTGCACACGTGACCA
1 ACA--TAGTAGCCTGCACATAGTACTACACATGTGACCA
22799899 TCACTTTCAC
Statistics
Matches: 112, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
48 4 0.04
49 7 0.06
50 61 0.54
51 38 0.34
52 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (49 bp):
ACATAGTAGCCTGCACATAGTACTACACATGTGACCAGAACCATCCGAT
Found at i:22799933 original size:101 final size:100
Alignment explanation
Indices: 22799709--22799898 Score: 283
Period size: 100 Copynumber: 1.9 Consensus size: 100
22799699 GATGTTTGGT
*
22799709 TCACATAGTAGCCTACACATAGTACTACACATGTGACCATTACCATCCGATACATGTAGTAGCCT
1 TCACATAGTAGCCTACACATAGTACTACACATGTGACCA-TACCATCCGATACACGTAGTAGCCT
*
22799774 GCACATAGAACTACACACGTGATCAGAACTATCCGG
65 GCACATAGAACTACACACGTGACCAGAACTATCCGG
* * * *
22799810 TCGCATAGTAGCCTGCACATAGTACTACACATGTGACC-TATCATTCTGATACACGTAGTAGCCT
1 TCACATAGTAGCCTACACATAGTACTACACATGTGACCATACCA-TCCGATACACGTAGTAGCCT
* *
22799874 GCACATAGTACTGCACACGTGACCA
65 GCACATAGAACTACACACGTGACCA
22799899 TCACTTTCAC
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
99 4 0.05
100 40 0.50
101 36 0.45
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (100 bp):
TCACATAGTAGCCTACACATAGTACTACACATGTGACCATACCATCCGATACACGTAGTAGCCTG
CACATAGAACTACACACGTGACCAGAACTATCCGG
Found at i:22803605 original size:45 final size:46
Alignment explanation
Indices: 22803511--22803606 Score: 106
Period size: 45 Copynumber: 2.1 Consensus size: 46
22803501 TGATGATGAC
* * *
22803511 TTTTACTACAATGACTTATCATCCAAGTTGCCTGATTTTGATGGCT
1 TTTTACTACAATAACTTATCATCCAAGTTGCCTAAATTTGATGGCT
** * *
22803557 TTTTACTACAATAAC-TATCATCCCGGTTGACC-AAATTTGGTGGTT
1 TTTTACTACAATAACTTATCATCCAAGTTG-CCTAAATTTGATGGCT
22803602 TTTTA
1 TTTTA
22803607 ACCTACCATC
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
45 26 0.62
46 16 0.38
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.42
Consensus pattern (46 bp):
TTTTACTACAATAACTTATCATCCAAGTTGCCTAAATTTGATGGCT
Found at i:22807577 original size:22 final size:22
Alignment explanation
Indices: 22807552--22807594 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
22807542 CAAATAAACT
*
22807552 CCAAACAATAGCATCA-GAATAG
1 CCAAAC-ACAGCATCACGAATAG
*
22807574 CCAATCACAGCATCACGAATA
1 CCAAACACAGCATCACGAATA
22807595 TTTAACATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.47, C:0.28, G:0.12, T:0.14
Consensus pattern (22 bp):
CCAAACACAGCATCACGAATAG
Found at i:22814909 original size:18 final size:19
Alignment explanation
Indices: 22814886--22814948 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 19
22814876 TATTAATAAC
22814886 ATAAATATAATAATAAAA-
1 ATAAATATAATAATAAAAT
*
22814904 ATAAATAATTTATAATAAAAT
1 ATAAAT-A-TAATAATAAAAT
22814925 ATAAA-A-AATACATAAAAT
1 ATAAATATAATA-ATAAAAT
22814943 AATAAA
1 -ATAAA
22814949 CGATATAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 3 0.08
18 13 0.34
19 7 0.18
20 10 0.26
21 5 0.13
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAATATAATAATAAAAT
Found at i:22815517 original size:21 final size:21
Alignment explanation
Indices: 22815494--22815580 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 21
22815484 TATTTTAATA
22815494 TTTTAAAAATTCAAAAAATTAT
1 TTTTAAAAATT-AAAAAATTAT
22815516 TTTTAAAAATTAAAAATCATTAAATT
1 TTTTAAAAATTAAAAA--ATT--A-T
*
22815542 TATTTAAAAATTATAAAA-TAT
1 T-TTTAAAAATTAAAAAATTAT
*
22815563 ATTTTAAATATTAAAAAA
1 -TTTTAAAAATTAAAAAA
22815581 GTAATTAAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
21 20 0.36
22 13 0.24
23 3 0.05
24 1 0.02
25 2 0.04
26 2 0.04
27 14 0.25
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTTAAAAATTAAAAAATTAT
Found at i:22815528 original size:29 final size:28
Alignment explanation
Indices: 22815496--22815560 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
22815486 TTTTAATATT
*
22815496 TTAAAAATTCAAAAAATTATTTTTAAAAA
1 TTAAAAATTCAAAAAATT-TATTTAAAAA
**
22815525 TTAAAAA-TCATTAAATTTATTTAAAAA
1 TTAAAAATTCAAAAAATTTATTTAAAAA
22815552 TTATAAAAT
1 TTA-AAAAT
22815561 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 12 0.39
28 12 0.39
29 7 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (28 bp):
TTAAAAATTCAAAAAATTTATTTAAAAA
Found at i:22815548 original size:20 final size:20
Alignment explanation
Indices: 22815525--22815566 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22815515 TTTTTAAAAA
* *
22815525 TTAAAAATCATTAAATTTAT
1 TTAAAAATCATAAAATATAT
*
22815545 TTAAAAATTATAAAATATAT
1 TTAAAAATCATAAAATATAT
22815565 TT
1 TT
22815567 TAAATATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAATCATAAAATATAT
Found at i:22815580 original size:49 final size:50
Alignment explanation
Indices: 22815495--22815589 Score: 124
Period size: 48 Copynumber: 1.9 Consensus size: 50
22815485 ATTTTAATAT
*
22815495 TTTAAAAATTCAAAAAATTATTTTTAAAAATTAAAAA-TCATTAAATTTA
1 TTTAAAAATTCAAAAAATTATTTTTAAAAATTAAAAAGTAATTAAATTTA
* *
22815544 TTTAAAAATT-ATAAAA-TATATTTTAAATATTAAAAAAGTAATTAAA
1 TTTAAAAATTCAAAAAATTAT-TTTTAAAAATT-AAAAAGTAATTAAA
22815590 CCTTGACATG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
47 3 0.08
48 15 0.38
49 15 0.38
50 7 0.17
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (50 bp):
TTTAAAAATTCAAAAAATTATTTTTAAAAATTAAAAAGTAATTAAATTTA
Found at i:22817283 original size:22 final size:23
Alignment explanation
Indices: 22817237--22817303 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 23
22817227 TTTTTGCAAT
22817237 TTATTTATTTTAAAATTTTTATA
1 TTATTTATTTTAAAATTTTTATA
* *
22817260 TTATTTGTTTTAAATTATTTTATTA
1 TTATTTATTTTAAAAT-TTTTA-TA
22817285 TTATTTATTTTAAAATTTT
1 TTATTTATTTTAAAATTTT
22817304 CACATATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 14 0.37
24 8 0.21
25 16 0.42
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.67
Consensus pattern (23 bp):
TTATTTATTTTAAAATTTTTATA
Found at i:22817311 original size:25 final size:23
Alignment explanation
Indices: 22817237--22817323 Score: 93
Period size: 25 Copynumber: 3.6 Consensus size: 23
22817227 TTTTTGCAAT
*
22817237 TTATTTATTTTAAAATTTTTATA
1 TTATTTATTTTAAAATTTTAATA
* *
22817260 TTATTTGTTTTAAATTATTTTATTA
1 TTATTTATTTTAAA--ATTTTAATA
22817285 TTATTTATTTTAAAATTTTCACATA
1 TTATTTATTTTAAAATTTT-A-ATA
**
22817310 TTATGCATTTTAAA
1 TTATTTATTTTAAA
22817324 CTATATTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
23 18 0.34
24 1 0.02
25 34 0.64
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATTTATTTTAAAATTTTAATA
Found at i:22817580 original size:23 final size:23
Alignment explanation
Indices: 22817548--22817595 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
22817538 TGGTTATTTA
* * *
22817548 TTTTAATTTGCTTTGTATGTTAT
1 TTTTAATTTGCGTTGCATATTAT
*
22817571 TTTTATTTTGCGTTGCATATTAT
1 TTTTAATTTGCGTTGCATATTAT
22817594 TT
1 TT
22817596 ACTTTGAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.17, C:0.06, G:0.12, T:0.65
Consensus pattern (23 bp):
TTTTAATTTGCGTTGCATATTAT
Found at i:22817629 original size:24 final size:25
Alignment explanation
Indices: 22817587--22817645 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
22817577 TTTGCGTTGC
* ** *
22817587 ATATTATTTACTTTGAATTG-CTTT
1 ATATTATTTACCTCAAATTGTCTAT
22817611 ATATTATTTACCTCAAATTGTTCTAT
1 ATATTATTTACCTCAAATTG-TCTAT
22817637 ATATTATTT
1 ATATTATTT
22817646 CGTTTTCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 17 0.59
26 12 0.41
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.56
Consensus pattern (25 bp):
ATATTATTTACCTCAAATTGTCTAT
Found at i:22821715 original size:13 final size:12
Alignment explanation
Indices: 22821687--22821733 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 12
22821677 CTATGGTTTT
22821687 CAAAA-AAATAAA
1 CAAAATAAA-AAA
22821699 -AAAATAAAAAA
1 CAAAATAAAAAA
22821710 TCAAAATAAAAAA
1 -CAAAATAAAAAA
22821723 CAAAATCAAAA
1 CAAAAT-AAAA
22821734 TAATATTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 7 0.23
12 9 0.29
13 15 0.48
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.11
Consensus pattern (12 bp):
CAAAATAAAAAA
Found at i:22821738 original size:21 final size:22
Alignment explanation
Indices: 22821691--22821738 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 22
22821681 GGTTTTCAAA
22821691 AAAATAA-AAAAATAAAAAATC
1 AAAATAATAAAAATAAAAAATC
*
22821712 --AA-AATAAAAA-ACAAAATC
1 AAAATAATAAAAATAAAAAATC
22821730 AAAATAATA
1 AAAATAATA
22821739 TTTCAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 8
0.71 0.03 0.26
Matches are distributed among these distances:
18 9 0.41
19 7 0.32
20 2 0.09
21 4 0.18
ACGTcount: A:0.79, C:0.06, G:0.00, T:0.15
Consensus pattern (22 bp):
AAAATAATAAAAATAAAAAATC
Found at i:22821782 original size:6 final size:5
Alignment explanation
Indices: 22821771--22821833 Score: 56
Period size: 6 Copynumber: 11.8 Consensus size: 5
22821761 ATATTTCAAA
* *
22821771 AAAATG AAAATG AAAAT A-AAG AAAAG AAAAG AAAAAG AGAATG AAAAG
1 AAAA-G AAAA-G AAAAG AAAAG AAAAG AAAAG -AAAAG A-AAAG AAAAG
22821819 AAAAGG AAAAG AAAA
1 AAAA-G AAAAG AAAA
22821834 AGGCGAAAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
4 3 0.06
5 22 0.45
6 24 0.49
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (5 bp):
AAAAG
Found at i:22821794 original size:9 final size:10
Alignment explanation
Indices: 22821788--22821833 Score: 56
Period size: 11 Copynumber: 4.3 Consensus size: 10
22821778 AAATGAAAAT
22821788 AAAGAAAAGA
1 AAAGAAAAGA
22821798 AAAGAAAAAGA
1 AAAG-AAAAGA
*
22821809 GAATGAAAAGA
1 -AAAGAAAAGA
22821820 AAAGGAAAAGA
1 AAA-GAAAAGA
22821831 AAA
1 AAA
22821834 AGGCGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 6 0.19
11 22 0.71
12 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:22821835 original size:6 final size:5
Alignment explanation
Indices: 22821788--22821833 Score: 56
Period size: 5 Copynumber: 8.6 Consensus size: 5
22821778 AAATGAAAAT
*
22821788 AAAGA AAAGA AAAGAA AAAGA GAATGA AAAGA AAAGGA AAAGA AAA
1 AAAGA AAAGA AAAG-A AAAGA -AAAGA AAAGA AAA-GA AAAGA AAA
22821834 AGGCGAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
5 22 0.61
6 14 0.39
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:22822842 original size:45 final size:45
Alignment explanation
Indices: 22822770--22822857 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
22822760 AAGAAGAAGG
* * *
22822770 GACCAAGGTGAAAACTCACAAAGGGCGCCTTGAGTCCTAAAAAAA
1 GACCAAGGTGAAAACCCACAAAAGGCGCCTTGAGTCATAAAAAAA
* *
22822815 GACCAAGGTGAAAACCCGCAAAAGGCGCTTTGAGTCATAAAAA
1 GACCAAGGTGAAAACCCACAAAAGGCGCCTTGAGTCATAAAAA
22822858 TACAGTAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.14
Consensus pattern (45 bp):
GACCAAGGTGAAAACCCACAAAAGGCGCCTTGAGTCATAAAAAAA
Found at i:22824402 original size:44 final size:44
Alignment explanation
Indices: 22824334--22824842 Score: 203
Period size: 44 Copynumber: 10.8 Consensus size: 44
22824324 TATGGTGAAT
* * * *
22824334 CTTATCTTCTTGAAGTTGCGGTGGAGCAGATTGAAGCCACCAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGC
** * * **
22824378 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CTAGC
* * * * * * * *
22824423 CTTATTTCCCGGATGTTGTAGTGGAACAAATTAAAGCTACAAGTTATGAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-A-CTA-G-C
* *
22824473 GAATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACTAGC
1 ----CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGC
** * * **
22824521 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CTAGC
* * * * * * * *
22824566 CTTATTTCCCGGATGTTGTAGTGGAACAAATTAAAGCTACAAGTTATGAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-A-CTA-G-C
* *
22824616 GAATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACTAGC
1 ----CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGC
* * * * **
22824664 CTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGACAACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACTAGC
* * * * * *
22824709 CTTATTTCCCTGGCA-TTGTAGTGGAACAGATT-AGAGTTACAAATTATGGC
1 CTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTGA-AG---C-CACTA--GC
* * * *
22824759 GAATCTTATCTTCATGAAGTTGCAGTGGAGCAGATTGAAGCTACCAGC
1 ----CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGC
* *
22824807 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
22824843 ACAGCGAATC
Statistics
Matches: 335, Mismatches: 96, Indels: 68
0.67 0.19 0.14
Matches are distributed among these distances:
44 132 0.39
45 87 0.26
46 2 0.01
47 4 0.01
48 13 0.04
49 2 0.01
50 6 0.02
51 3 0.01
52 2 0.01
53 2 0.01
54 81 0.24
55 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAGC
Found at i:22824446 original size:143 final size:143
Alignment explanation
Indices: 22824180--22825432 Score: 1586
Period size: 143 Copynumber: 8.8 Consensus size: 143
22824170 ATTACAGTAA
* *
22824180 TTATGGCGAATCTTATCTTCCTGGAGTTGCAGTGGAGCAGATTGAAGCCATCAGCCTTATCTCCC
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * * * * * *
22824245 TGAAGTTACAATAGAGTAGACTGAAGACAGTGAATCTTATTTCTCGGACT-TTACAGTGGAACAA
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGA-TGTTGCAGTGGAACAG
22824309 ATTAAAGCTACAAG
130 ATTAAAGCTACAAG
* * *
22824323 TTATGGTGAATCTTATCTTCTTGAAGTTGCGGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * *
22824388 TGAAGTTGCAGTGGAGCAGACCGAAGACAGCGAATCTTATTTCCCGGATGTTGTAGTGGAACAAA
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGATGTTGCAGTGGAACAGA
22824453 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * *
22824466 TTATGACGAATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACTAGCCTTATCTCCC
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * *
22824531 TGAAGTTGCAGTGGAGCAGACCGAAGACAGCGAATCTTATTTCCCGGATGTTGTAGTGGAACAAA
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGATGTTGCAGTGGAACAGA
22824596 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * * *
22824609 TTATGACGAATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACTAGCCTTATCTCCT
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * * *
22824674 TGAAGTTGCAGTGGAGCAAATTGAAGACAACAAATCTTATTTCCCTGGCA--TTGTAGTGGAACA
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCC-GG-ATGTTGCAGTGGAACA
* * *
22824737 GATTAGAGTTACAAA
129 GATTAAAGCTACAAG
* *
22824752 TTATGGCGAATCTTATCTTCATGAAGTTGCAGTGGAGCAGATTGAAGCTACCAGCCTTATCTCCC
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * * * *
22824817 TGAAGTTGTAGTGGAGCAGACTGAAGACAGCGAATCTTATTTTCC-TAGCGTTACACTGGAACAG
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGA-TGTTGCAGTGGAACAG
* *
22824881 ATTAGAGCTACAAA
130 ATTAAAGCTACAAG
* * ** * * * * * *
22824895 TTATGGC-AGATATTATCTTCCTGAAGTTGTAGTGTTGCATAATAAAACCATCATCCTTATCTCC
1 TTATGGCGA-ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * * * * *
22824959 ATGATGTTGCAGTGGAGCAAACTGAAGAAAACGAATCTTATTTCCTTGG-CGTTACAATGGAACA
65 CTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCC-CGGATGTTGCAGTGGAACA
* *
22825023 GATTAAAACTACAGG
129 GATTAAAGCTACAAG
* * * * * *
22825038 TTATGGCAAATCTTATCTTCCTAAAGTTGCAGTCGAGCAGATTGAAGCCACCAGCCTTGTATCTC
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * * * * *
22825103 TGAAGTTACAGCGGAGCAAACTGAAGACAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACATA
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGATGTTGCAGTGGAACAGA
22825168 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * *
22825181 TTATGGCGAATCTTATCTT-CTCGAAGTTGTAGTGGAGCAGATTGAAGCCACCAGACTTATCTCT
1 TTATGGCGAATCTTATCTTCCT-GAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * *
22825245 CTGAAGTTACAGCGGAGCAGAATGAAGACAACGAATCTTATTTCCCTG-TGTTGCAGTGGAACAG
65 CTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGATGTTGCAGTGGAACAG
22825309 ATTAAAGCTACAAG
130 ATTAAAGCTACAAG
22825323 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
1 TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * *
22825388 TAAAGTTGTAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCC
66 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCC
22825433 TAGCGTTGCA
Statistics
Matches: 973, Mismatches: 124, Indels: 27
0.87 0.11 0.02
Matches are distributed among these distances:
140 1 0.00
142 132 0.14
143 836 0.86
144 3 0.00
145 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (143 bp):
TTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCGGATGTTGCAGTGGAACAGA
TTAAAGCTACAAG
Found at i:22826919 original size:25 final size:23
Alignment explanation
Indices: 22826901--22826987 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 23
22826891 TTTTTGCAAT
*
22826901 TTATTTATTTTAAACTTTTTTATA
1 TTATTTATTTTAAA-TTTTTAATA
*
22826925 TTATTTATTTTAAATTATTTTATTA
1 TTATTTATTTTAAA-T-TTTTAATA
*
22826950 TTATTTATTTTAAATTTTCACATA
1 TTATTTATTTTAAATTTTTA-ATA
**
22826974 TTATGCATTTTAAA
1 TTATTTATTTTAAA
22826988 CTATATTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
23 4 0.07
24 30 0.56
25 20 0.37
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (23 bp):
TTATTTATTTTAAATTTTTAATA
Found at i:22826941 original size:14 final size:14
Alignment explanation
Indices: 22826918--22826965 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
22826908 TTTTAAACTT
*
22826918 TTTTATATTATTTA
1 TTTTAAATTATTTA
22826932 TTTTAAATTATTT-
1 TTTTAAATTATTTA
*
22826945 TATT--ATTATTTA
1 TTTTAAATTATTTA
22826957 TTTTAAATT
1 TTTTAAATT
22826966 TTCACATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
11 7 0.25
12 3 0.11
13 3 0.11
14 15 0.54
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTAAATTATTTA
Found at i:22827241 original size:23 final size:23
Alignment explanation
Indices: 22827209--22827256 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
22827199 TGGTTATTTA
* *
22827209 TTTTAATTTGCTTTGCATGTTAT
1 TTTTAATTTGCGTTGCATATTAT
*
22827232 TTTTATTTTGCGTTGCATATTAT
1 TTTTAATTTGCGTTGCATATTAT
22827255 TT
1 TT
22827257 ACTTTGAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.08, G:0.12, T:0.62
Consensus pattern (23 bp):
TTTTAATTTGCGTTGCATATTAT
Found at i:22833351 original size:14 final size:14
Alignment explanation
Indices: 22833332--22833374 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
22833322 TGCAGCAGGC
*
22833332 AAGGTGACCATGCA
1 AAGGTGGCCATGCA
22833346 AAGGTGGCCATGCA
1 AAGGTGGCCATGCA
22833360 AAGGTGGCCATGCA
1 AAGGTGGCCATGCA
22833374 A
1 A
22833375 GAAGAAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.33, T:0.14
Consensus pattern (14 bp):
AAGGTGGCCATGCA
Found at i:22835327 original size:5 final size:6
Alignment explanation
Indices: 22835311--22835336 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22835301 GCTTTAGCCC
22835311 ATTTTT ATTTTT ATTTTT ATTTTT AT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT
22835337 AATAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:22835433 original size:30 final size:31
Alignment explanation
Indices: 22835395--22835540 Score: 133
Period size: 30 Copynumber: 4.9 Consensus size: 31
22835385 AGGCAAAAAA
**
22835395 TAAAATTTACATTTTAACCCCTGCACTTTT-
1 TAAAATTTACATTTTAACCCCTAAACTTTTC
* *
22835425 TGAAATTTACATTTTGA-CCCTAAACTTTTC
1 TAAAATTTACATTTTAACCCCTAAACTTTTC
*
22835455 TAAAATTTACATTTTAACCCC-AAAATTTTC
1 TAAAATTTACATTTTAACCCCTAAACTTTTC
* * ** *
22835485 TATAA-TTACATTTCAACCTTTAGAC-TTTC
1 TAAAATTTACATTTTAACCCCTAAACTTTTC
* *
22835514 TCAAAATTT-CACTTTGACCCCTAAACT
1 T-AAAATTTACATTTTAACCCCTAAACT
22835541 CTCAAGAAAT
Statistics
Matches: 90, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
29 27 0.30
30 58 0.64
31 5 0.06
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (31 bp):
TAAAATTTACATTTTAACCCCTAAACTTTTC
Found at i:22836028 original size:14 final size:14
Alignment explanation
Indices: 22836005--22836039 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
22835995 AACCCAAAGG
22836005 AAAAAG-AGAGAAA
1 AAAAAGAAGAGAAA
22836018 AAAAAGAAGAGAAA
1 AAAAAGAAGAGAAA
*
22836032 AGAAAGAA
1 AAAAAGAA
22836040 AAAAGGAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGAGAAA
Found at i:22836048 original size:22 final size:23
Alignment explanation
Indices: 22836006--22836052 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
22835996 ACCCAAAGGA
*
22836006 AAAAGAGAGAAAAAAAAGAAGAG
1 AAAAGAAAGAAAAAAAAGAAGAG
*
22836029 AAAAGAAAG-AAAAAAGGAAGAG
1 AAAAGAAAGAAAAAAAAGAAGAG
22836051 AA
1 AA
22836053 GGGGAGGCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (23 bp):
AAAAGAAAGAAAAAAAAGAAGAG
Found at i:22836499 original size:18 final size:18
Alignment explanation
Indices: 22836461--22836498 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
22836451 CTTTTGGGTA
22836461 TTATTTTTTAAATATATT
1 TTATTTTTTAAATATATT
*
22836479 TTATTTTATTTAATATATT
1 TTATTTT-TTAAATATATT
22836498 T
1 T
22836499 AAATGGTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTTTTAAATATATT
Found at i:22836772 original size:16 final size:16
Alignment explanation
Indices: 22836744--22836849 Score: 95
Period size: 16 Copynumber: 6.2 Consensus size: 16
22836734 TCATATTTAA
22836744 AAAATTTCTCGTGTTTT
1 AAAA-TTCTCGTGTTTT
* *
22836761 AAAATCCTCGTGTTTC
1 AAAATTCTCGTGTTTT
*
22836777 AAAATTGTCGTGTTTT
1 AAAATTCTCGTGTTTT
* *
22836793 CAAAAATTTTAGTGTTTTT
1 --AAAATTCTCGTG-TTTT
* *
22836812 AAGAATTTTCGTGTCTCT
1 AA-AATTCTCGTGT-TTT
22836830 AAAATTCTCGTGTTTT
1 AAAATTCTCGTGTTTT
22836846 AAAA
1 AAAA
22836850 AATTTTCGTG
Statistics
Matches: 73, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
16 29 0.40
17 17 0.23
18 23 0.32
19 4 0.05
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.46
Consensus pattern (16 bp):
AAAATTCTCGTGTTTT
Found at i:22836799 original size:34 final size:36
Alignment explanation
Indices: 22836723--22836870 Score: 128
Period size: 35 Copynumber: 4.2 Consensus size: 36
22836713 AAATAAAAAA
* *
22836723 TTCAAAAATCCTCAT-ATTTAAAAAATTTCTCGTGTT
1 TTCAAAAATCCTCGTGTTTTAAAAAATTT-TCGTGTT
* *
22836759 TT--AAAATCCTCGTG-TTT-CAAAATTGTCGTGTT
1 TTCAAAAATCCTCGTGTTTTAAAAAATTTTCGTGTT
** * * *
22836791 TTCAAAAATTTTAGTGTTTTTAAGAATTTTCGTG-T
1 TTCAAAAATCCTCGTGTTTTAAAAAATTTTCGTGTT
* * *
22836826 CTCTAAAATTCTCGTGTTTTAAAAAATTTTCGTGTT
1 TTCAAAAATCCTCGTGTTTTAAAAAATTTTCGTGTT
*
22836862 CTCAAAAAT
1 TTCAAAAAT
22836871 AAAAAATGTT
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
32 9 0.10
33 6 0.07
34 22 0.24
35 32 0.36
36 21 0.23
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.45
Consensus pattern (36 bp):
TTCAAAAATCCTCGTGTTTTAAAAAATTTTCGTGTT
Found at i:22836844 original size:53 final size:51
Alignment explanation
Indices: 22836739--22836861 Score: 158
Period size: 53 Copynumber: 2.4 Consensus size: 51
22836729 AATCCTCATA
* *
22836739 TTTAAAAAATTTCTCGTG-TTTTAAAATCCTCGTGTTTCAAAATTGTCGTGT
1 TTTAAAAAATTT-TCGTGTTTTTAAAATCCTCGTGTCTCAAAATTCTCGTGT
* * **
22836790 TTTCAAAAATTTTAGTGTTTTTAAGAATTTTCGTGTCTCTAAAATTCTCGTGT
1 TTTAAAAAATTTTCGTGTTTTTAA-AATCCTCGTGTCTC-AAAATTCTCGTGT
22836843 TTTAAAAAATTTTCGTGTT
1 TTTAAAAAATTTTCGTGTT
22836862 CTCAAAAATA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 4 0.07
51 17 0.28
52 11 0.18
53 29 0.48
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (51 bp):
TTTAAAAAATTTTCGTGTTTTTAAAATCCTCGTGTCTCAAAATTCTCGTGT
Found at i:22836868 original size:18 final size:18
Alignment explanation
Indices: 22836743--22836870 Score: 113
Period size: 18 Copynumber: 7.3 Consensus size: 18
22836733 CTCATATTTA
22836743 AAAAATTTCTCGTGTTTT-
1 AAAAATTT-TCGTGTTTTC
**
22836761 -AAAATCCTCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
*
22836777 -AAAATTGTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* *
22836794 AAAAATTTTAGTGTTTTT
1 AAAAATTTTCGTGTTTTC
* *
22836812 AAGAATTTTCGTG-TCTC
1 AAAAATTTTCGTGTTTTC
* * *
22836829 TAAAATTCTCGTGTTTTA
1 AAAAATTTTCGTGTTTTC
*
22836847 AAAAATTTTCGTGTTCTC
1 AAAAATTTTCGTGTTTTC
22836865 AAAAAT
1 AAAAAT
22836871 AAAAAATGTT
Statistics
Matches: 86, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
15 3 0.03
16 15 0.17
17 21 0.24
18 47 0.55
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:22851486 original size:10 final size:10
Alignment explanation
Indices: 22851471--22851543 Score: 107
Period size: 10 Copynumber: 7.5 Consensus size: 10
22851461 TATTATGCCT
*
22851471 AAAAAAAA-G
1 AAAAAAAACA
22851480 AAAAAAAACA
1 AAAAAAAACA
22851490 ACAAAAAAAC-
1 A-AAAAAAACA
22851500 -AAAAAAACA
1 AAAAAAAACA
22851509 AAAAAAAACA
1 AAAAAAAACA
22851519 AAAAAAAACA
1 AAAAAAAACA
22851529 AAAAAAAACA
1 AAAAAAAACA
22851539 AAAAA
1 AAAAA
22851544 GCAAAAAAAG
Statistics
Matches: 59, Mismatches: 1, Indels: 7
0.88 0.01 0.10
Matches are distributed among these distances:
8 8 0.14
9 8 0.14
10 35 0.59
11 8 0.14
ACGTcount: A:0.89, C:0.10, G:0.01, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:22851512 original size:28 final size:27
Alignment explanation
Indices: 22851472--22851564 Score: 109
Period size: 26 Copynumber: 3.4 Consensus size: 27
22851462 ATTATGCCTA
22851472 AAAAAAAGAAAAAAAACAACAAAAAAAC
1 AAAAAAA-AAAAAAAACAACAAAAAAAC
22851500 AAAAAAACAAAAAAAAACAA-AAAAAAAC
1 -AAAAAA-AAAAAAAAACAACAAAAAAAC
* * *
22851528 AAAAAAAAACAAAAA-AGCAAAAAAAG
1 AAAAAAAAAAAAAAACAACAAAAAAAC
*
22851554 TAAAAAAAAAA
1 AAAAAAAAAAA
22851565 GAAGAAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.02
26 24 0.42
27 6 0.11
28 8 0.14
29 17 0.30
30 1 0.02
ACGTcount: A:0.87, C:0.09, G:0.03, T:0.01
Consensus pattern (27 bp):
AAAAAAAAAAAAAAACAACAAAAAAAC
Found at i:22851564 original size:38 final size:38
Alignment explanation
Indices: 22851471--22851552 Score: 130
Period size: 38 Copynumber: 2.2 Consensus size: 38
22851461 TATTATGCCT
*
22851471 AAAAAAAA-GAAAAAAAACAACAAAAAAACAAAAAAACA
1 AAAAAAAACAAAAAAAAACAA-AAAAAAACAAAAAAACA
*
22851509 AAAAAAAACAAAAAAAAACAAAAAAAAACAAAAAAGCA
1 AAAAAAAACAAAAAAAAACAAAAAAAAACAAAAAAACA
22851547 AAAAAA
1 AAAAAA
22851553 GTAAAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
38 30 0.73
39 11 0.27
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (38 bp):
AAAAAAAACAAAAAAAAACAAAAAAAAACAAAAAAACA
Found at i:22851573 original size:1 final size:1
Alignment explanation
Indices: 22851471--22851564 Score: 80
Period size: 1 Copynumber: 94.0 Consensus size: 1
22851461 TATTATGCCT
* * * * * * *
22851471 AAAAAAAAGAAAAAAAACAACAAAAAAACAAAAAAACAAAAAAAAACAAAAAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** **
22851536 ACAAAAAAGCAAAAAAAGTAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22851565 GAAGAAAAAT
Statistics
Matches: 71, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.87, C:0.09, G:0.03, T:0.01
Consensus pattern (1 bp):
A
Found at i:22851573 original size:10 final size:9
Alignment explanation
Indices: 22851471--22851562 Score: 89
Period size: 9 Copynumber: 9.9 Consensus size: 9
22851461 TATTATGCCT
*
22851471 AAAAAAAAG
1 AAAAAAAAC
22851480 AAAAAAAAC
1 AAAAAAAAC
22851489 AACAAAAAA-
1 AA-AAAAAAC
22851498 ACAAAAAAAC
1 A-AAAAAAAC
22851508 AAAAAAAAAC
1 -AAAAAAAAC
22851518 AAAAAAAAAC
1 -AAAAAAAAC
22851528 AAAAAAAA-
1 AAAAAAAAC
*
22851536 ACAAAAAAGC
1 A-AAAAAAAC
**
22851546 AAAAAAAGT
1 AAAAAAAAC
22851555 AAAAAAAA
1 AAAAAAAA
22851563 AAGAAGAAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
8 1 0.01
9 45 0.62
10 26 0.36
11 1 0.01
ACGTcount: A:0.87, C:0.09, G:0.03, T:0.01
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:22851573 original size:38 final size:35
Alignment explanation
Indices: 22851472--22851573 Score: 114
Period size: 38 Copynumber: 2.7 Consensus size: 35
22851462 ATTATGCCTA
*
22851472 AAAAAAAGAAAAAAAACAACAAAAAAACAAAAAAAC
1 AAAAAAAGAAAAAAAA-AAAAAAAAAACAAAAAAAC
* *
22851508 AAAAAAAAACAAAAAAAAACAAAAAAAAACAAAAAAGC
1 --AAAAAAAGAAAAAAAAA-AAAAAAAAACAAAAAAAC
*
22851546 AAAAAAAGTAAAAAAAAAAGAAGAAAAA
1 AAAAAAAG-AAAAAAAAAA-AAAAAAAA
22851574 TCAAGATGAA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
36 8 0.14
37 17 0.30
38 31 0.55
ACGTcount: A:0.86, C:0.08, G:0.05, T:0.01
Consensus pattern (35 bp):
AAAAAAAGAAAAAAAAAAAAAAAAAACAAAAAAAC
Found at i:22852686 original size:81 final size:77
Alignment explanation
Indices: 22852435--22853008 Score: 490
Period size: 81 Copynumber: 7.4 Consensus size: 77
22852425 TCAAGAATTA
* * *
22852435 TATTTTTCAATTTTTGTTTTTC--AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAG
22852498 TCACG-CTGAGG
66 TCACGTCTGAGG
* * * *
22852509 TATTTTTAAATTGCTGCTTTTC-AAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAG
22852573 TCA--TCTTGAGG
66 TCACGTC-TGAGG
* * * *
22852584 T-CTTTTCAATTTCTTTTTTTTCAAAAAAAAAAAATCAACTCATAATGCTAGAAGTGAGTTGAGC
1 TATTTTTCAATTTC-TGTTTTTC-----AAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
22852648 CTCGAGTCACGTC-GAGG
60 CTCGAGTCACGTCTGAGG
* * * * * **
22852665 TATTTTTCAATTTTTGGTTTTCACAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG
1 TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAG
**
22852730 TCATATCCTGAGG
66 TCACGT-CTGAGG
* * * * * *
22852743 TATTTTTCAATTTCTATTTTTCAAAAAAATTCGACTCATATTGCGAGAGGTGAGTTAAGTCTCGG
1 TATTTTTCAATTTCTGTTTTTCAAAAAAA-TCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGA
* * *
22852808 GTCACATACCGATG
65 GTCACGT-CTGAGG
* * * * *
22852822 TATTTCTTTTAAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCCAGAGGTGAGTTGAACCTC
1 TA--T-TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
* * *
22852887 GGGTCACATATCGAGG
63 GAGTCACGTCT-GAGG
* * * * *
22852903 TATTTCTTTTAAATTTCTGTTTCTC--CAAAATCAACTCATAATGCGAGAGGCGAGTTGAGACTC
1 TA--T-TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
*
22852966 G-GATCATG-CTGAGG
63 GAG-TCACGTCTGAGG
*
22852980 TA-TTTTCAATTTCTATTTTTCAAGAAAAA
1 TATTTTTCAATTTCTGTTTTTCAA-AAAAA
22853009 ACGATAATAG
Statistics
Matches: 409, Mismatches: 67, Indels: 46
0.78 0.13 0.09
Matches are distributed among these distances:
73 16 0.04
74 28 0.07
75 55 0.13
76 44 0.11
77 7 0.02
78 31 0.08
79 76 0.19
81 117 0.29
82 33 0.08
83 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (77 bp):
TATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAG
TCACGTCTGAGG
Found at i:22852853 original size:236 final size:229
Alignment explanation
Indices: 22852435--22853008 Score: 567
Period size: 236 Copynumber: 2.5 Consensus size: 229
22852425 TCAAGAATTA
* * **
22852435 TATTTTTCAATTTTTGTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTC
1 TATTTTTCAATTTTTGTTTTCCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT-TAGTC
* * **
22852500 --A-CGCTGAGGTATTTTTAAATTGCTGCTTTTC-AAAAAATCAACTCATAATGCGAGAGGTGAG
65 ATATC-CTGAGGTATTTTTCAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAG
* * * **
22852561 TTGAGCCTCGGGTCATCTTGAGGTCTTTTCAATTTCTTTTTTTTCAAAAAAAAAAAATCAACTCA
129 TTAAGCCTCGGGTCATCATGAGGTCTTTTAAATTTCTTGCTTTTC----AAAAAAAATCAACTCA
* * *
22852626 TAATGCTAGAAGTGAGTTGAGCCTCGAGTCAC-GTCGAGG
190 TAATGCCAGAAGTGAGTTGAACCTCGAGTCACAATCGAGG
* *
22852665 TATTTTTCAATTTTTGGTTTTCACAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTTAAG
1 TATTTTTCAATTTTT-GTTTTC-CAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTT-AG
* *
22852730 TCATATCCTGAGGTATTTTTCAATTTCTATTTTTCAAAAAAATTCGACTCATATTGCGAGAGGTG
63 TCATATCCTGAGGTATTTTTCAATTTCTATTTTTCAAAAAAA-TCAACTCATAATGCGAGAGGTG
* **
22852795 AGTTAAGTCTCGGGTCACATACCGATGTATTTCTTTTAAATTTC-TGCTTTTC-AAAAAAATCAA
127 AGTTAAGCCTCGGGT--CAT--C-ATG-AGGTCTTTTAAATTTCTTGCTTTTCAAAAAAAATCAA
* * *
22852858 CTCATATTGCCAGAGGTGAGTTGAACCTCGGGTCACATATCGAGG
186 CTCATAATGCCAGAAGTGAGTTGAACCTCGAGTCACA-ATCGAGG
* * * * *
22852903 TATTTCTTTTAAATTTCTGTTTCTCC-AAAATCAACTCATAATGCGAGAGGCGAGTTGAGAC-TC
1 TA--T-TTTTCAATTTTTGTTT-TCCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTA
* *
22852966 G-GATCATGCTGAGGTA-TTTTCAATTTCTATTTTTCAAGAAAAA
62 GTCAT-ATCCTGAGGTATTTTTCAATTTCTATTTTTCAA-AAAAA
22853009 ACGATAATAG
Statistics
Matches: 287, Mismatches: 35, Indels: 37
0.80 0.10 0.10
Matches are distributed among these distances:
230 15 0.05
231 5 0.02
232 38 0.13
234 25 0.09
235 7 0.02
236 98 0.34
237 16 0.06
238 12 0.04
239 31 0.11
240 7 0.02
241 20 0.07
242 13 0.05
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (229 bp):
TATTTTTCAATTTTTGTTTTCCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTAGTCA
TATCCTGAGGTATTTTTCAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTT
AAGCCTCGGGTCATCATGAGGTCTTTTAAATTTCTTGCTTTTCAAAAAAAATCAACTCATAATGC
CAGAAGTGAGTTGAACCTCGAGTCACAATCGAGG
Found at i:22852905 original size:160 final size:154
Alignment explanation
Indices: 22852435--22853008 Score: 519
Period size: 160 Copynumber: 3.7 Consensus size: 154
22852425 TCAAGAATTA
* * *
22852435 TATTTTTCAATTTTTGTTTTTC--AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTCAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
* * * *
22852498 TCACGCTGAGGTATTTTTAAATTGCTGCTTTTC-AAAAAATCAACTCATAATGCGAGAGGTGAGT
66 TCACTCCGAGGTATTTTTAAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
22852562 TGAGCCTCGGGTCATC-T-T-GAGG
131 TGAGCCTCGGGTCA-CATATCGAGG
* * * *
22852584 T-CTTTTCAATTTCTTTTTTTTCAAAAAAAAAAAATCAACTCATAATGCTAGAAGTGAGTTGAGC
1 TATTTTTCAATTTC-TATTTTTC-----AAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* * * * * *
22852648 CTCGAGTCACGT-CGAGGTATTTTTCAATTTTTGGTTTTCACAAAAATGAACTCATATTGCGAGA
60 CTCGGGTCAC-TCCGAGGTATTTTTAAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGA
***
22852712 GGTGAGTTGAGCCTTAAGT--CATATCCTGAGG
124 GGTGAGTTGAGCCTCGGGTCACATAT-C-GAGG
* * * *
22852743 TATTTTTCAATTTCTATTTTTCAAAAAAATTCGACTCATATTGCGAGAGGTGAGTTAAGTCTCGG
1 TATTTTTCAATTTCTATTTTTCAAAAAAA-TCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
* *
22852808 GTCACATACCGATGTATTTCTTTTAAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCCAGAG
65 GTCAC-T-CCGAGGTA--T-TTTTAAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAG
*
22852873 GTGAGTTGAACCTCGGGTCACATATCGAGG
125 GTGAGTTGAGCCTCGGGTCACATATCGAGG
* * * * * *
22852903 TATTTCTTTTAAATTTCTGTTTCTC--CAAAATCAACTCATAATGCGAGAGGCGAGTTGAGACTC
1 TA--T-TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
* * * **
22852966 GGATCA-TGCTGAGGTA-TTTTCAATTTCTATTTTTCAAGAAAAA
63 GGGTCACT-CCGAGGTATTTTTAAATTTCTGCTTTTCAA-AAAAA
22853009 ACGATAATAG
Statistics
Matches: 341, Mismatches: 56, Indels: 50
0.76 0.13 0.11
Matches are distributed among these distances:
148 10 0.03
149 8 0.02
154 26 0.08
155 40 0.12
156 64 0.19
157 43 0.13
158 7 0.02
159 13 0.04
160 103 0.30
161 5 0.01
162 6 0.02
163 16 0.05
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (154 bp):
TATTTTTCAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
TCACTCCGAGGTATTTTTAAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCGGGTCACATATCGAGG
Found at i:22853310 original size:6 final size:6
Alignment explanation
Indices: 22853299--22853330 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
22853289 GCTTTAGCCC
22853299 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT
22853331 AATAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:22853338 original size:18 final size:18
Alignment explanation
Indices: 22853299--22853339 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
22853289 GCTTTAGCCC
** *
22853299 ATTTTTATTTTTATTTTT
1 ATTTTTATTTTTATAATA
22853317 ATTTTTATTTTTATAATA
1 ATTTTTATTTTTATAATA
22853335 ATTTT
1 ATTTT
22853340 AAATATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTATTTTTATAATA
Done.