Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 79 of 228
Found at i:23515854 original size:45 final size:45
Alignment explanation
Indices: 23515774--23515948 Score: 192
Period size: 45 Copynumber: 3.9 Consensus size: 45
23515764 ACCATTACAT
* * *
23515774 GGTGG-ATCAGCACATA-ACACCACCCTTATAATTAATTATATTC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATTAATGATATTC
** *
23515817 GGTGGAATCAGCACATAGAAACCACCTTTATTTTTAATGATTTTC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATTAATGATATTC
* * * * * **
23515862 GATGGAGTCAGCACATAGCAACCACCTTTATAATCAATGGTACCC
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATTAATGATATTC
* * *
23515907 GGTGGAATCAACACATAGCAACCACCTTTATAATCAATGATA
1 GGTGGAATCAGCACATAGAAACCACCTTTATAATTAATGATA
23515949 CTCAATACAC
Statistics
Matches: 110, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 5 0.05
44 11 0.10
45 94 0.85
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGAAACCACCTTTATAATTAATGATATTC
Found at i:23515946 original size:90 final size:88
Alignment explanation
Indices: 23515776--23515947 Score: 218
Period size: 90 Copynumber: 1.9 Consensus size: 88
23515766 CATTACATGG
* * ** *
23515776 TGGATCAGCACATAACACCACCCTTATAATTAATTATATTCGGTGGAATCAGCACATAGAAACCA
1 TGGATCAGCACATAACACCACCCTTATAATCAATGATACCCGGTGGAATCAACACATAGAAACCA
** *
23515841 CCTTTATTTTTAATGATTTTCGA
66 CCTTTATAATCAATGATTTTCGA
* * * *
23515864 TGGAGTCAGCACATAGCAACCACCTTTATAATCAATGGTACCCGGTGGAATCAACACATAGCAAC
1 TGGA-TCAGCACATAAC-ACCACCCTTATAATCAATGATACCCGGTGGAATCAACACATAGAAAC
23515929 CACCTTTATAATCAATGAT
64 CACCTTTATAATCAATGAT
23515948 ACTCAATACA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
88 4 0.06
89 11 0.16
90 55 0.79
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (88 bp):
TGGATCAGCACATAACACCACCCTTATAATCAATGATACCCGGTGGAATCAACACATAGAAACCA
CCTTTATAATCAATGATTTTCGA
Found at i:23519834 original size:25 final size:27
Alignment explanation
Indices: 23519806--23519855 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
23519796 CCGATATATG
23519806 GCTCTTT-A-GAGATTTCTGATTAAAA
1 GCTCTTTCATGAGATTTCTGATTAAAA
*
23519831 GCTCTTTCATGAGCTTTCTGATTAA
1 GCTCTTTCATGAGATTTCTGATTAA
23519856 TGGCTCTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.32
26 1 0.05
27 14 0.64
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (27 bp):
GCTCTTTCATGAGATTTCTGATTAAAA
Found at i:23519861 original size:27 final size:25
Alignment explanation
Indices: 23519803--23519867 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 25
23519793 ATCCCGATAT
23519803 ATGGCTCTTTAGAGATTTCTGATTA
1 ATGGCTCTTTAGAGATTTCTGATTA
** *
23519828 AAAGCTCTTTCATGAGCTTTCTGATTA
1 ATGGCTCTTT-A-GAGATTTCTGATTA
*
23519855 ATGGCTCTCTAGA
1 ATGGCTCTTTAGA
23519868 TCTCCTCGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
25 10 0.31
26 2 0.06
27 20 0.62
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (25 bp):
ATGGCTCTTTAGAGATTTCTGATTA
Found at i:23519967 original size:25 final size:24
Alignment explanation
Indices: 23519937--23520000 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
23519927 ATTGACTCGC
* *
23519937 AAGAGCTTCTCGTTACATGGCTCAC
1 AAGAGCTT-TCGTTAAATGGCTCAA
* *
23519962 ATGAGCTTTCCATTAAATGGCTCAA
1 AAGAGCTTT-CGTTAAATGGCTCAA
23519987 AAGAGCTTTTCGTT
1 AAGAGC-TTTCGTT
23520001 TATGTGCTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
24 1 0.03
25 27 0.87
26 3 0.10
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (24 bp):
AAGAGCTTTCGTTAAATGGCTCAA
Found at i:23521224 original size:42 final size:42
Alignment explanation
Indices: 23521172--23521262 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
23521162 ATTTTAAATG
*
23521172 GCCACACGGCCTGAGACACGGGTGTGTCTCTCGACCGTGTGA
1 GCCACACGGCCTGAGACACGGGCGTGTCTCTCGACCGTGTGA
* *
23521214 GCCACACGGCCTGAGACATGGGCGTGTCTCTTGACCGTGTGA
1 GCCACACGGCCTGAGACACGGGCGTGTCTCTCGACCGTGTGA
23521256 GCCACAC
1 GCCACAC
23521263 AGCTTGACCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (42 bp):
GCCACACGGCCTGAGACACGGGCGTGTCTCTCGACCGTGTGA
Found at i:23522701 original size:53 final size:52
Alignment explanation
Indices: 23522570--23522705 Score: 164
Period size: 53 Copynumber: 2.6 Consensus size: 52
23522560 CATGTGGGTT
** * *
23522570 ACACGGGCAAGGCGACTTGGGCATGTGGGTTGTGGGCCAGGCCGTGTGGGGC
1 ACACGGGCAAGGCGACTTGGGTGTGTGGGCTGTGGGCCAGGCCGTGTGGGCC
* * * *
23522622 ACACGGACTAGGACGACTTGGCTGTGTGGGCTGTGGGCCAGGCTGTGTGGGCC
1 ACACGGGCAAGG-CGACTTGGGTGTGTGGGCTGTGGGCCAGGCCGTGTGGGCC
* *
23522675 ACACGGGCAAGGCCAATTTGGGTGTGTGGGC
1 ACACGGGCAAGG-CGACTTGGGTGTGTGGGC
23522706 CACAAGAGCG
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
52 10 0.14
53 59 0.86
ACGTcount: A:0.15, C:0.21, G:0.45, T:0.19
Consensus pattern (52 bp):
ACACGGGCAAGGCGACTTGGGTGTGTGGGCTGTGGGCCAGGCCGTGTGGGCC
Found at i:23522791 original size:484 final size:485
Alignment explanation
Indices: 23521875--23522845 Score: 1489
Period size: 484 Copynumber: 2.0 Consensus size: 485
23521865 TGCTAAATTT
* * *
23521875 TTCGTTAGAATGCTATTTTTTAGGTTTTGGATGTCTTGAGAGTGTTGTAGCATAAAAAAGAATCA
1 TTCGTTAGAATGCTATTTCTTAGGTTTTGGATGTCTTGAGAGTGCTGTAGCATAAAAAAGAACCA
* * * * *
23521940 GGTATGTAACGAAAACACGAGAAAACGAGGTTCAGTGGAACTAAAAAAAGTGGCCTGTCAATGCC
66 GGTATGTAACGAAAACACAAGAAAACGAGGTTCAGCGAAACTAAAAAAAGTGGCCTATCAACGCC
* * * ** * *
23522005 ATACGGGCGTGTGCCCGGCCGTGTGGCTGGCCATGTGTGGCACATGGCCATGTGATGGGCGAGTG
131 ACACGGGCATGTGCCCAGCCGTGTGGCTGGCCATGTGTGGCACATAACCATGTGACGAGCGAGTG
*
23522070 TGTGGCCATGTGGGTTACACGGGCTAGGCTGACTTGGGCATGTGGGCTGTGGGCCAGGCCGTGTG
196 TGTGGCCATGTGGGTTACACGGGCAAGGCTGACTTGGGCATGTGGGCTGTGGGCCAGGCCGTGTG
* * *
23522135 GGCCACATGGACTAGGCCAACTTGGTCGGTGGGCAATGGACCAGGCCATTTGGGCCACACGGGCA
261 GGCCACACGGACTAGGACAACTTGGTCGGTGGGCAATGGACCAGGCCATGTGGGCCACACGGGCA
* *
23522200 AGGCCAATTTGAGCGTGTGGGCCACACGAGGGTGTCAGCCCAAAATTTTTAAATTTTCCCTAAGG
326 AGGCCAATTTGAGCGTGTGGGCCACAAGAGCGTGTCAGCCCAAAATTTTTAAATTTTCCCTAAGG
* * *
23522265 TCATATATGTTGTTCTGATCGACTGCGGGCCTTCCCTAGGGTCAGTAAGGACAAACAAACCCTAA
391 TCATATATGTCGTTCTGATCGACCGCGAGCCTTCCCTAGGGTCAGTAAGGACAAACAAACCCTAA
23522330 TGCATGATACCTTCCTAATCTGTTAGACTG
456 TGCATGATACCTTCCTAATCTGTTAGACTG
* *
23522360 TTCGTTGGAATGCTGTTTCTTAGGTTTTGGATGTCTTGAGAGTGCTGTAGCATAAAAAAGAACCA
1 TTCGTTAGAATGCTATTTCTTAGGTTTTGGATGTCTTGAGAGTGCTGTAGCATAAAAAAGAACCA
*
23522425 GGTGTGTAACGAAAACACAAGAAAACGAGGTTCAGCGAAACT-AAAAAAGTGGCCTATCAACGCC
66 GGTATGTAACGAAAACACAAGAAAACGAGGTTCAGCGAAACTAAAAAAAGTGGCCTATCAACGCC
* * *
23522489 ACATGGGCATGTGCCCAGCCGTGTGGCTGGCCGTGTGTGGCACATAACCGTGTGACGAGCGAGTG
131 ACACGGGCATGTGCCCAGCCGTGTGGCTGGCCATGTGTGGCACATAACCATGTGACGAGCGAGTG
*
23522554 TGTGGCCATGTGGGTTACACGGGCAAGGC-GACTTGGGCATGTGGGTTGTGGGCCAGGCCGTGTG
196 TGTGGCCATGTGGGTTACACGGGCAAGGCTGACTTGGGCATGTGGGCTGTGGGCCAGGCCGTGTG
* * ** * **
23522618 GGGCACACGGACTAGGACGACTTGG-CTGTGTGGGCTGTGGGCCAGGCTGTGTGGGCCACACGGG
261 GGCCACACGGACTAGGACAACTTGGTC-G-GTGGGCAATGGACCAGGCCATGTGGGCCACACGGG
* * * *
23522682 CAAGGCCAATTTGGGTGTGTGGGCCACAAGAGCGTGTGAGCCCAAAATTTTTAAATTTTCCCTAG
324 CAAGGCCAATTTGAGCGTGTGGGCCACAAGAGCGTGTCAGCCCAAAATTTTTAAATTTTCCCTAA
* *
23522747 GGTCATATATGTCGTTTTGATCGACCGCGAGCCTTCCGTAGGGTCAGTAAGGACAAACAAACCCT
389 GGTCATATATGTCGTTCTGATCGACCGCGAGCCTTCCCTAGGGTCAGTAAGGACAAACAAACCCT
* *
23522812 AATGCATGATACCTTTCTAATCTGTTAGATTG
454 AATGCATGATACCTTCCTAATCTGTTAGACTG
23522844 TT
1 TT
23522846 TTGAGTTTAA
Statistics
Matches: 438, Mismatches: 46, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
482 1 0.00
483 56 0.13
484 283 0.65
485 98 0.22
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (485 bp):
TTCGTTAGAATGCTATTTCTTAGGTTTTGGATGTCTTGAGAGTGCTGTAGCATAAAAAAGAACCA
GGTATGTAACGAAAACACAAGAAAACGAGGTTCAGCGAAACTAAAAAAAGTGGCCTATCAACGCC
ACACGGGCATGTGCCCAGCCGTGTGGCTGGCCATGTGTGGCACATAACCATGTGACGAGCGAGTG
TGTGGCCATGTGGGTTACACGGGCAAGGCTGACTTGGGCATGTGGGCTGTGGGCCAGGCCGTGTG
GGCCACACGGACTAGGACAACTTGGTCGGTGGGCAATGGACCAGGCCATGTGGGCCACACGGGCA
AGGCCAATTTGAGCGTGTGGGCCACAAGAGCGTGTCAGCCCAAAATTTTTAAATTTTCCCTAAGG
TCATATATGTCGTTCTGATCGACCGCGAGCCTTCCCTAGGGTCAGTAAGGACAAACAAACCCTAA
TGCATGATACCTTCCTAATCTGTTAGACTG
Found at i:23522957 original size:13 final size:13
Alignment explanation
Indices: 23522939--23522977 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
23522929 TAATCTTGTA
*
23522939 TATCTGCATCTGT
1 TATCTGTATCTGT
23522952 TATCTGTATCTGT
1 TATCTGTATCTGT
23522965 TATCTGTATCTGT
1 TATCTGTATCTGT
23522978 ATATGGGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.51
Consensus pattern (13 bp):
TATCTGTATCTGT
Found at i:23522961 original size:6 final size:6
Alignment explanation
Indices: 23522939--23522979 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
23522929 TAATCTTGTA
*
23522939 TATCTG CATCTG TTATCTG TATCTG TTATCTG TATCTG TAT
1 TATCTG TATCTG -TATCTG TATCTG -TATCTG TATCTG TAT
23522980 ATGGGGTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 20 0.65
7 11 0.35
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (6 bp):
TATCTG
Found at i:23522963 original size:19 final size:19
Alignment explanation
Indices: 23522939--23522979 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
23522929 TAATCTTGTA
23522939 TATCTG-CATCTGTTATCTG
1 TATCTGTCATCTG-TATCTG
*
23522958 TATCTGTTATCTGTATCTG
1 TATCTGTCATCTGTATCTG
23522977 TAT
1 TAT
23522980 ATGGGGTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (19 bp):
TATCTGTCATCTGTATCTG
Found at i:23551744 original size:38 final size:38
Alignment explanation
Indices: 23551703--23551849 Score: 188
Period size: 38 Copynumber: 3.9 Consensus size: 38
23551693 TTAATACATT
* * * *
23551703 GGCACTAAGCCTGCTAGGTAAAAAG-CAGTAATAACACT
1 GGCACTAAGCCTGCTAGGCACAAAGCCTG-AATAACACC
*
23551741 GGCACTAAGCTTGCTAGGCACAAAGCCTGAATAACACC
1 GGCACTAAGCCTGCTAGGCACAAAGCCTGAATAACACC
* * *
23551779 GGTACTAAGCCTGCTAGGCACAAAGCTTGAATAATACC
1 GGCACTAAGCCTGCTAGGCACAAAGCCTGAATAACACC
* *
23551817 AGCACTAAGCCTGCTAGGCACAAAGCCTAAATA
1 GGCACTAAGCCTGCTAGGCACAAAGCCTGAATA
23551850 GTGCTATAAT
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 93 0.98
39 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (38 bp):
GGCACTAAGCCTGCTAGGCACAAAGCCTGAATAACACC
Found at i:23558437 original size:43 final size:42
Alignment explanation
Indices: 23558370--23558498 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 42
23558360 CATAGGATTT
* *
23558370 TCGAGATGTGTTATCGTGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCA
*
23558413 TCGACT-TGTGTTTACGTGTAAGACC-CTGTCTGGGACAG-TGCCA
1 TCGA-TATGTG-TTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
* ** *
23558456 TTGATACATGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCA
23558499 CTATAAGAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
42 3 0.04
43 62 0.89
44 5 0.07
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
TCGATATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:23559415 original size:23 final size:23
Alignment explanation
Indices: 23559389--23559438 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
23559379 AAATGTTGCT
*
23559389 CAAACTGTTGTATATATGCTGCC
1 CAAACTGATGTATATATGCTGCC
* * *
23559412 CAAATTGATGTATTTATGCTGTC
1 CAAACTGATGTATATATGCTGCC
23559435 CAAA
1 CAAA
23559439 TTTTGGTGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (23 bp):
CAAACTGATGTATATATGCTGCC
Found at i:23559439 original size:23 final size:23
Alignment explanation
Indices: 23559397--23559440 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
23559387 CTCAAACTGT
23559397 TGTATATATGCTGCCCAAATTGA
1 TGTATATATGCTGCCCAAATTGA
* *
23559420 TGTATTTATGCTGTCCAAATT
1 TGTATATATGCTGCCCAAATT
23559441 TTGGTGTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (23 bp):
TGTATATATGCTGCCCAAATTGA
Found at i:23559477 original size:24 final size:25
Alignment explanation
Indices: 23559427--23559511 Score: 72
Period size: 24 Copynumber: 3.5 Consensus size: 25
23559417 TGATGTATTT
*
23559427 ATGCTGTCCAAATTTTGGTGTGAAA
1 ATGCTGTCCAAATTTTGGTATGAAA
*
23559452 ATGCTGT-CTAATTTTGGTAT-ATAA
1 ATGCTGTCCAAATTTTGGTATGA-AA
* * *
23559476 ATGTTGTTCAAATTGAT-GTAT-AAA
1 ATGCTGTCCAAATT-TTGGTATGAAA
23559500 A-GCTGTCCAAAT
1 ATGCTGTCCAAAT
23559512 AGGGTAGATT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
23 10 0.20
24 22 0.44
25 17 0.34
26 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (25 bp):
ATGCTGTCCAAATTTTGGTATGAAA
Found at i:23562324 original size:27 final size:27
Alignment explanation
Indices: 23562294--23562587 Score: 267
Period size: 27 Copynumber: 10.9 Consensus size: 27
23562284 AAAATAACCA
*
23562294 AAATACCCCTATAAGGTAAAATGATCG
1 AAATACCCCCATAAGGTAAAATGATCG
* *
23562321 AAATACCCTCATAAGGTAAAATGATCA
1 AAATACCCCCATAAGGTAAAATGATCG
* * *
23562348 AAATACCCCAATAAGGTAAAATG-GCTT
1 AAATACCCCCATAAGGTAAAATGATC-G
* * *
23562375 AAATAACCCCATAGGGTAAAATGATTG
1 AAATACCCCCATAAGGTAAAATGATCG
* ** *
23562402 AAATA-CCCTATGGGGGTAAAATG-GCTG
1 AAATACCCCCAT-AAGGTAAAATGATC-G
* * *
23562429 AAATACCCCCATAGGGTAAAATAACCG
1 AAATACCCCCATAAGGTAAAATGATCG
*
23562456 AAATACCCCCATAAGGTAAAATGATCA
1 AAATACCCCCATAAGGTAAAATGATCG
* * *
23562483 AAATACCCCCATAGGGTAAAATGGTCA
1 AAATACCCCCATAAGGTAAAATGATCG
*
23562510 AAATACCCCCAT-AGAGTAAAATGA-CTT
1 AAATACCCCCATAAG-GTAAAATGATC-G
* * *
23562537 AAATACCCCTAT-AGGATAAAGTGACCG
1 AAATACCCCCATAAGG-TAAAATGATCG
*
23562564 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCCCATAAGGTAAAATGA
23562588 ATGTTATACC
Statistics
Matches: 220, Mismatches: 36, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
26 9 0.04
27 202 0.92
28 9 0.04
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (27 bp):
AAATACCCCCATAAGGTAAAATGATCG
Found at i:23562599 original size:81 final size:81
Alignment explanation
Indices: 23562294--23562587 Score: 337
Period size: 81 Copynumber: 3.6 Consensus size: 81
23562284 AAAATAACCA
* * *
23562294 AAATACCCCTATAAGGTAAAATGATCGAAATACCCTCATAAGGTAAAATGATCAAAATACCCCAA
1 AAATACCCCTATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCA
*
23562359 TA-AGGTAAAATGGCTT
66 TAGA-GTAAAATGACTT
* * * * * *
23562375 AAATAACCCC-ATAGGGTAAAATGATTGAAATA-CCCTATGGGGGTAAAATG-GCTGAAATACCC
1 AAAT-ACCCCTATAAGGTAAAATGATCGAAATACCCCCAT-AGGGTAAAATGATC-AAAATACCC
* * **
23562437 CCATAGGGTAAAATAACCG
63 CCATAGAGTAAAATGACTT
* * *
23562456 AAATACCCCCATAAGGTAAAATGATCAAAATACCCCCATAGGGTAAAATGGTCAAAATACCCCCA
1 AAATACCCCTATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCA
23562521 TAGAGTAAAATGACTT
66 TAGAGTAAAATGACTT
* *
23562537 AAATACCCCTAT-AGGATAAAGTGACCGAAATACCCCCATAGGGTAAAATGA
1 AAATACCCCTATAAGG-TAAAATGATCGAAATACCCCCATAGGGTAAAATGA
23562588 ATGTTATACC
Statistics
Matches: 175, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
80 13 0.07
81 151 0.86
82 11 0.06
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (81 bp):
AAATACCCCTATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCA
TAGAGTAAAATGACTT
Found at i:23566378 original size:24 final size:24
Alignment explanation
Indices: 23566351--23566400 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
23566341 CAAAAGGAAG
*
23566351 TCATCAATATATATCAATGCATTA
1 TCATCAATATATATCAATACATTA
23566375 TCATCAATATATATCAATACATTA
1 TCATCAATATATATCAATACATTA
23566399 TC
1 TC
23566401 TATAATGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (24 bp):
TCATCAATATATATCAATACATTA
Found at i:23570032 original size:13 final size:13
Alignment explanation
Indices: 23570014--23570040 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23570004 TTTTTTTCCT
23570014 TTTTAAATTTAAG
1 TTTTAAATTTAAG
23570027 TTTTAAATTTAAG
1 TTTTAAATTTAAG
23570040 T
1 T
23570041 AAATCATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TTTTAAATTTAAG
Found at i:23578420 original size:26 final size:26
Alignment explanation
Indices: 23578390--23578442 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
23578380 TTGGATAAAA
23578390 AGGGGTCT-CTAAGTG-TGGATTCCCCG
1 AGGGGT-TGCTAAGTGCT-GATTCCCCG
23578416 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
23578442 A
1 A
23578443 ATTATTGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.17, C:0.23, G:0.34, T:0.26
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:23578466 original size:42 final size:42
Alignment explanation
Indices: 23578419--23578643 Score: 210
Period size: 43 Copynumber: 5.3 Consensus size: 42
23578409 TTCCCCGAGG
* *
23578419 GGTTGCTAAGTGCTGATTCCCCGAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
23578461 GGTTGCTAAGTACTGATTCCACTGTA-TATTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATTA-TTGATTGT-AAAGGT
* * * * *
23578504 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
*
23578546 GGTTGCTAAGTGTTGATTCCACCGTATCT-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT-AAAGGT
* * * **
23578589 GGTTGCTATGTGGTGATTCCCCGTATCACTAAATT-T-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTA-TTGATTGTAAAGGT
23578630 GGTTGCTAAGTGCT
1 GGTTGCTAAGTGCT
23578644 AAATCCACCG
Statistics
Matches: 148, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
40 4 0.03
41 17 0.11
42 55 0.37
43 62 0.42
44 10 0.07
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.36
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
Found at i:23578563 original size:85 final size:84
Alignment explanation
Indices: 23578416--23578653 Score: 332
Period size: 85 Copynumber: 2.8 Consensus size: 84
23578406 GGATTCCCCG
* * * * * *
23578416 AGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGATTCTAAAGGTGGTTGCTAAGTACTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
*
23578481 ACTGTATATTTGATTGTGAA
65 ACCGTATATTTGATTGTGAA
*
23578501 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTGGTTGCTAAGTGTTGATTCC
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCC
*
23578566 ACCGTATCTTTGATTGTGAA
65 ACCGTATATTTGATTGTGAA
* * * * *
23578586 AGGGGTTGCTATGTGGTGATTCCCCGTATCACTAAATTTAAGGTGGTTGCTAAGTGCTAAATCCA
1 AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
23578651 CCG
66 CCG
23578654 AGTAATGGAT
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 27 0.20
85 110 0.80
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (84 bp):
AGGGGTTGCTATGTGCTGATTCCCCGTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCA
CCGTATATTTGATTGTGAA
Found at i:23581617 original size:66 final size:65
Alignment explanation
Indices: 23581495--23581628 Score: 171
Period size: 66 Copynumber: 2.0 Consensus size: 65
23581485 ATTCTGAAGC
* * * *
23581495 TGTAGCTGGAGTTCATCATATTTTCTACTTGCCTTTGCTTCCCTCGCTGCTACCTCCGCTTTAAG
1 TGTAGCTGGAGTTCATCATATCTTCTA-TTGCCTCTGCTTCCCTCGATGCTACCTCCACTTTAAG
23581560 T
65 T
** *
23581561 TGTAGCTGGAGTTCATCATATCTTCT-TTGATCCTCTGCTTTTCTCGATGCTGCCTCCACTTTAA
1 TGTAGCTGGAGTTCATCATATCTTCTATTG--CCTCTGCTTCCCTCGATGCTACCTCCACTTTAA
23581625 GT
64 GT
23581627 TG
1 TG
23581629 AGCAATTTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
64 3 0.05
66 56 0.95
ACGTcount: A:0.14, C:0.27, G:0.17, T:0.42
Consensus pattern (65 bp):
TGTAGCTGGAGTTCATCATATCTTCTATTGCCTCTGCTTCCCTCGATGCTACCTCCACTTTAAGT
Found at i:23591757 original size:27 final size:27
Alignment explanation
Indices: 23591727--23591981 Score: 285
Period size: 27 Copynumber: 9.4 Consensus size: 27
23591717 AAGTATAATA
23591727 ACCGTAATGCCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
23591754 ACCGTAATGCCCCTGTAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* * * *
23591781 ACCATAATACCCCTGTAGGGTAAATTA
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* **
23591808 ATCGTAATGCCCCCATAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* * * * *
23591835 ACCATAATGCCCTTATAGGTTAAAATA
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* * *
23591862 ACTGTAATACCCCTGTAGGGTAAAATA
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* *
23591889 ACCGTAATACCCCTATAGGGTAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* *
23591916 ATCGTAATGCCCCTGTAGGGTAAAATA
1 ACCGTAATGCCCCTGTAGGGTAAAATG
* ** ***
23591943 ACCGTAATACCCCCATAACATAAAATG
1 ACCGTAATGCCCCTGTAGGGTAAAATG
23591970 ACCGTAATGCCC
1 ACCGTAATGCCC
23591982 ATAAAGGGTA
Statistics
Matches: 189, Mismatches: 39, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (27 bp):
ACCGTAATGCCCCTGTAGGGTAAAATG
Found at i:23591870 original size:81 final size:81
Alignment explanation
Indices: 23591723--23591997 Score: 354
Period size: 81 Copynumber: 3.4 Consensus size: 81
23591713 AAATAAGTAT
* * *
23591723 AATAACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCATAA
1 AATAACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAA
23591788 TACCCCTGTAGGGTAA
66 TACCCCTGTAGGGTAA
* * * * * * * *
23591804 ATTAATCGTAATGCCCCCATAGGGTAAAATGACCATAATGCCCTTATAGGTTAAAATAACTGTAA
1 AATAACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAA
23591869 TACCCCTGTAGGGTAA
66 TACCCCTGTAGGGTAA
* *
23591885 AATAACCGTAATACCCCTATAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCGTAA
1 AATAACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAA
** ***
23591950 TACCCCCATAACATAA
66 TACCCCTGTAGGGTAA
* * *
23591966 AATGACCGTAATGCCCATAAAGGGT-AAATGAC
1 AATAACCGTAATGCCCCTATAGGGTAAAATGAC
23591998 TATTTTACCC
Statistics
Matches: 163, Mismatches: 31, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
80 6 0.04
81 157 0.96
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (81 bp):
AATAACCGTAATGCCCCTATAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATAACCGTAA
TACCCCTGTAGGGTAA
Found at i:23591990 original size:54 final size:54
Alignment explanation
Indices: 23591878--23591993 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
23591868 ATACCCCTGT
* *** * * **
23591878 AGGGTAAAATAACCGTAATACCCCTATAGGGTAAAATGATCGTAATGCCCCTGT
1 AGGGTAAAATAACCGTAATACCCCCATAACATAAAATGACCGTAATGCCCATAA
23591932 AGGGTAAAATAACCGTAATACCCCCATAACATAAAATGACCGTAATGCCCATAA
1 AGGGTAAAATAACCGTAATACCCCCATAACATAAAATGACCGTAATGCCCATAA
23591986 AGGGTAAA
1 AGGGTAAA
23591994 TGACTATTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (54 bp):
AGGGTAAAATAACCGTAATACCCCCATAACATAAAATGACCGTAATGCCCATAA
Found at i:23592043 original size:24 final size:24
Alignment explanation
Indices: 23592014--23592062 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23592004 ACCCTTCGAG
23592014 TGTAAATAATTAACTTGTCCGTGA
1 TGTAAATAATTAACTTGTCCGTGA
* * * *
23592038 TGTAAATGATTGATTTGTCTGTGA
1 TGTAAATAATTAACTTGTCCGTGA
23592062 T
1 T
23592063 TTGTATGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (24 bp):
TGTAAATAATTAACTTGTCCGTGA
Found at i:23592180 original size:27 final size:27
Alignment explanation
Indices: 23592140--23592204 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
23592130 ATGGAGGAAG
*
23592140 TACTG-TACTAGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
23592165 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
*
23592193 TACTATTACTGG
1 TACTGTTACTGG
23592205 CAACATTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.15
27 26 0.76
28 2 0.06
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:23592307 original size:32 final size:32
Alignment explanation
Indices: 23592264--23592403 Score: 147
Period size: 32 Copynumber: 4.4 Consensus size: 32
23592254 TGGATTTGTA
23592264 CCGATCATATTACCGTTACTAATGGCTTTATG
1 CCGATCATATTACCGTTACTAATGGCTTTATG
* * *
23592296 CTGATCATATTACCGTTACTGATGGCTTTGTG
1 CCGATCATATTACCGTTACTAATGGCTTTATG
** * *
23592328 CCGATCATATTACCGTTACTGTTGGCTGTGTG
1 CCGATCATATTACCGTTACTAATGGCTTTATG
* * * * * *
23592360 CCGAACATATCACTGCTACTGATGGCTTTGTG
1 CCGATCATATTACCGTTACTAATGGCTTTATG
23592392 CC-AGTCATATTA
1 CCGA-TCATATTA
23592404 TTGCACTTAT
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
31 1 0.01
32 92 0.99
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (32 bp):
CCGATCATATTACCGTTACTAATGGCTTTATG
Found at i:23592332 original size:64 final size:64
Alignment explanation
Indices: 23592246--23592403 Score: 192
Period size: 64 Copynumber: 2.5 Consensus size: 64
23592236 TTGCTGCGAT
* * * * * * *
23592246 GTTATTGATGGATTTGTACCGATCATATTACCGTTACTAATGGCTTTATGCTGATCATATTACC
1 GTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTATGCCGAACATATCACC
** * *
23592310 GTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGTTGGCTGTGTGCCGAACATATCACT
1 GTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTATGCCGAACATATCACC
*
23592374 GCTACTGATGGCTTTGTGCC-AGTCATATTA
1 GTTACTGATGGCTTTGTGCCGA-TCATATTA
23592404 TTGCACTTAT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
63 1 0.01
64 80 0.99
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (64 bp):
GTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTGTATGCCGAACATATCACC
Found at i:23595732 original size:27 final size:27
Alignment explanation
Indices: 23595702--23595981 Score: 305
Period size: 27 Copynumber: 10.4 Consensus size: 27
23595692 CCCTAAAATA
* *
23595702 GGTATAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
23595729 GGTAAAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
** *
23595756 GGTAAAATGGTCGTAATGCCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
23595783 GGTAAAATAACCATAATAG-CCCTGTGG
1 GGTAAAATGACCGTAAT-GCCCCTGTAG
**
23595810 GGTAAAATGACCGTAATGCCCCCATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * **
23595837 GGTAAAATAACAGTAATACCCCCATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
23595864 GGTAAAATGACCGTAATGCCTCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
23595891 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
23595918 GGTAAAATGACCGTAATACTCCC-ATAA
1 GGTAAAATGACCGTAATGC-CCCTGTAG
* * **
23595945 CGTAAAATGATCGTAATGCCCCTGGGG
1 GGTAAAATGACCGTAATGCCCCTGTAG
23595972 GGT-AAATGAC
1 GGTAAAATGAC
23595982 TATTTTGCCC
Statistics
Matches: 211, Mismatches: 38, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
26 10 0.05
27 197 0.93
28 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:23596030 original size:24 final size:24
Alignment explanation
Indices: 23595998--23596060 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
23595988 GCCCCTTAAG
*
23595998 TGTAAATGATTGATTTGTCTGTAA
1 TGTAAATGATTGATTTGTCTATAA
*
23596022 TGTAAATGACTGATTTGTCTATAA
1 TGTAAATGATTGATTTGTCTATAA
* **
23596046 TTTGTATGATTGATT
1 TGTAAATGATTGATT
23596061 CTAAGCATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.48
Consensus pattern (24 bp):
TGTAAATGATTGATTTGTCTATAA
Found at i:23596192 original size:27 final size:27
Alignment explanation
Indices: 23596144--23596208 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
23596134 ATGGAGGAAG
*
23596144 TACTA-TATTGGTGGCTCTGCCACA-A
1 TACTATTACTGGTGGCTCTGCCACATA
*
23596169 TCACTGTTACTGGTGGCT-TGGCCACATA
1 T-ACTATTACTGGTGGCTCT-GCCACATA
23596197 TACTATTACTGG
1 TACTATTACTGG
23596209 CAGCTTTGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.12
27 26 0.79
28 2 0.06
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTATTACTGGTGGCTCTGCCACATA
Found at i:23596214 original size:27 final size:27
Alignment explanation
Indices: 23596162--23596214 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
23596152 TGGTGGCTCT
* **
23596162 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
23596189 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
23596215 TGCTTTGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:23596250 original size:26 final size:26
Alignment explanation
Indices: 23596196--23596250 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
23596186 TTGGCCACAT
**
23596196 ATACTATTACTGGCAGCTTTGCTTTG
1 ATACTATTACTGGCAGCTTTGCTGCG
*
23596222 ATACTATTGCTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAGCTTTGCTGCG
23596248 ATA
1 ATA
23596251 TTACTGATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCG
Found at i:23596437 original size:32 final size:32
Alignment explanation
Indices: 23596251--23596429 Score: 277
Period size: 32 Copynumber: 5.6 Consensus size: 32
23596241 TGCTGCGATA
* *
23596251 TTACTGATGGATTTGTGCCGATCATATTATCG
1 TTACTGATGGCTTTGTGCCGATCATATTACCG
23596283 TTACTGATGGCTTTGTGCCGATCATATTACCG
1 TTACTGATGGCTTTGTGCCGATCATATTACCG
* *
23596315 TTACTGATGGCTTTGTGCCGGTCATATTATCG
1 TTACTGATGGCTTTGTGCCGATCATATTACCG
23596347 TTACTGATGGCTTTGTGCCGATCATATTACCG
1 TTACTGATGGCTTTGTGCCGATCATATTACCG
* * * *
23596379 TTACTAATGGCTTTATACCGGTCATATTACCG
1 TTACTGATGGCTTTGTGCCGATCATATTACCG
*
23596411 TTACTGATGGCTGTGTGCC
1 TTACTGATGGCTTTGTGCC
23596430 AAACATATCA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 133 1.00
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (32 bp):
TTACTGATGGCTTTGTGCCGATCATATTACCG
Found at i:23596437 original size:64 final size:64
Alignment explanation
Indices: 23596272--23596456 Score: 271
Period size: 64 Copynumber: 2.9 Consensus size: 64
23596262 TTTGTGCCGA
* * *
23596272 TCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTGCCGG
1 TCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGG
23596336 TCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGG
1 TCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGG
* * * * * * * *
23596400 TCATATTACCGTTACTGATGGCTGTGTGCCAAACATATCACTGCTACTAATGACTTT
1 TCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTTT
23596457 GTACAAATCA
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 110 1.00
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (64 bp):
TCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGG
Found at i:23596457 original size:96 final size:96
Alignment explanation
Indices: 23596262--23596486 Score: 265
Period size: 96 Copynumber: 2.4 Consensus size: 96
23596252 TACTGATGGA
* * * *
23596262 TTTGTGCCGATCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCT
1 TTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGATCATATTACCGTTACTGATGGCT
* *** * * * *
23596327 TTGTGCCGGTCATATTATCGTTACTGATGGC
66 GTGTGCCAAACATATCATCGCTACTAATGAC
*
23596358 TTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGGTCATATTACCGTTACTGATGGCT
1 TTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGATCATATTACCGTTACTGATGGCT
23596423 GTGTGCCAAACATATCA-CTGCTACTAATGAC
66 GTGTGCCAAACATATCATC-GCTACTAATGAC
* ** * *
23596454 TTTGTACAAATCATATTACTG-TACTTATGGCTT
1 TTTGTGCCGATCATATTACCGTTACTAATGGCTT
23596487 GTAGCCATTC
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
95 12 0.11
96 98 0.89
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (96 bp):
TTTGTGCCGATCATATTACCGTTACTAATGGCTTTATACCGATCATATTACCGTTACTGATGGCT
GTGTGCCAAACATATCATCGCTACTAATGAC
Found at i:23596468 original size:64 final size:64
Alignment explanation
Indices: 23596251--23596486 Score: 267
Period size: 64 Copynumber: 3.7 Consensus size: 64
23596241 TGCTGCGATA
* * * * *
23596251 TTACTGATGGATTTGTGCCGATCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCG
1 TTACTAATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTACCG
* * * * *
23596315 TTACTGATGGCTTTGTGCCGGTCATATTATCGTTACTGATGGCTTTGTGCCGATCATATTACCG
1 TTACTAATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTACCG
* * * * * *
23596379 TTACTAATGGCTTTATACCGGTCATATTACCGTTACTGATGGCTGTGTGCCAAACATATCACTG
1 TTACTAATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTACCG
* * ** * *
23596443 CTACTAATGACTTTGTACAAATCATATTACTG-TACTTATGGCTT
1 TTACTAATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTT
23596487 GTAGCCATTC
Statistics
Matches: 152, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
63 10 0.07
64 142 0.93
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (64 bp):
TTACTAATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTACCG
Found at i:23596503 original size:22 final size:22
Alignment explanation
Indices: 23596478--23596527 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
23596468 ATTACTGTAC
* * *
23596478 TTATGGCTTGTAGCCATTCTGT
1 TTATAGCTTATAGCCATCCTGT
*
23596500 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTTATAGCCATCCTGT
23596522 TTATAG
1 TTATAG
23596528 TTCTTAACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.46
Consensus pattern (22 bp):
TTATAGCTTATAGCCATCCTGT
Found at i:23598499 original size:48 final size:48
Alignment explanation
Indices: 23598447--23598573 Score: 170
Period size: 48 Copynumber: 2.6 Consensus size: 48
23598437 TGTATATTTT
* *
23598447 TTTCAAGTAACGAAAAGATTGAGAAAGAAAAGGGAC-GGAATTTTGGGG
1 TTTCAAGTAAAGAAAAGATTGAGAAAGAAAAGGGACAAG-ATTTTGGGG
*
23598495 TTTCAAGCAAAGAAAAG-TCTG-GAAAAGAAAAGGGACAAGATTTTGGGG
1 TTTCAAGTAAAGAAAAGAT-TGAG-AAAGAAAAGGGACAAGATTTTGGGG
*
23598543 TTTCAAGTAAAGAAAAGACTGAGAAAGAAAA
1 TTTCAAGTAAAGAAAAGATTGAGAAAGAAAA
23598574 TAATTCGTGC
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
47 2 0.03
48 65 0.94
49 2 0.03
ACGTcount: A:0.46, C:0.07, G:0.28, T:0.19
Consensus pattern (48 bp):
TTTCAAGTAAAGAAAAGATTGAGAAAGAAAAGGGACAAGATTTTGGGG
Found at i:23598700 original size:40 final size:40
Alignment explanation
Indices: 23598639--23598714 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
23598629 AGTAAAAAAA
*
23598639 TTTGCGGCGTTTTTCCCATAAACGCCGCTATTGCTTACCT
1 TTTGAGGCGTTTTTCCCATAAACGCCGCTATTGCTTACCT
* *
23598679 TTTGAGGCGTTTTTCCTATAAATGCCGCTATTGCTT
1 TTTGAGGCGTTTTTCCCATAAACGCCGCTATTGCTT
23598715 TACTTATTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.41
Consensus pattern (40 bp):
TTTGAGGCGTTTTTCCCATAAACGCCGCTATTGCTTACCT
Found at i:23606787 original size:28 final size:27
Alignment explanation
Indices: 23606723--23606787 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
23606713 TTAACAGTAG
* *
23606723 CAGTACAGCGTGGGCCTTAGCCCAATA
1 CAGTACAGTGTGGGCCTAAGCCCAATA
* * *
23606750 TAGAAACAGTGTGGGCCTAAGCCCGATA
1 CAG-TACAGTGTGGGCCTAAGCCCAATA
23606778 CAGTATCAGT
1 CAGTA-CAGT
23606788 ATGGTGCAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (27 bp):
CAGTACAGTGTGGGCCTAAGCCCAATA
Found at i:23607100 original size:32 final size:32
Alignment explanation
Indices: 23607071--23607264 Score: 148
Period size: 32 Copynumber: 6.1 Consensus size: 32
23607061 CAACCATCGA
*
23607071 TAACGATAACATGATCGGCACAAAGCCATCAG
1 TAACGGTAACATGATCGGCACAAAGCCATCAG
** * * * *
23607103 TAATTGTGATATGATTGGCACACAA-TCATCAG
1 TAACGGTAACATGATCGGCACA-AAGCCATCAG
*
23607135 TAACAGTGAA-ATGATCGGCACACAA-CCATC-G
1 TAACGGT-AACATGATCGGCACA-AAGCCATCAG
* * * *
23607166 ATAACGGTAATATGATCGGTACAATGCCATTAG
1 -TAACGGTAACATGATCGGCACAAAGCCATCAG
*
23607199 CAACGGT-ACTATGATCGGCACAAAGCCATCAG
1 TAACGGTAAC-ATGATCGGCACAAAGCCATCAG
* * *
23607231 TAATGGT-ACTATGATCGACACAAAGCCATTAG
1 TAACGGTAAC-ATGATCGGCACAAAGCCATCAG
23607263 TA
1 TA
23607265 GCATCGCAGC
Statistics
Matches: 130, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
31 5 0.04
32 121 0.93
33 4 0.03
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (32 bp):
TAACGGTAACATGATCGGCACAAAGCCATCAG
Found at i:23607149 original size:64 final size:64
Alignment explanation
Indices: 23607025--23607252 Score: 168
Period size: 64 Copynumber: 3.6 Consensus size: 64
23607015 ATGTGATTGA
* *
23607025 CACAAAGCCATCAGTAGTAGTGATATGATCGACATACAACCATCGATAACGATAACATGATCGG
1 CACAAAGCCATCAGTAATAGTGATATGATCGACACACAACCATCGATAACGATAACATGATCGG
* * * *
23607089 CACAAAGCCATCAGTAATTGTGATATGATTGGCACACAATCATC-AGTAAC-AGTGAA-ATGATC
1 CACAAAGCCATCAGTAATAGTGATATGATCGACACACAACCATCGA-TAACGA-T-AACATGATC
23607151 GG
63 GG
** * ** * * * *
23607153 CACACAA-CCATC-GATAACGGTAATATGATCGGTACA-ATGCCAT-TAGCAACGGT-ACTATGA
1 CACA-AAGCCATCAG-TAATAGTGATATGATCGACACACA-ACCATCGA-TAACGATAAC-ATGA
23607213 TCGG
61 TCGG
*
23607217 CACAAAGCCATCAGTAATGGT-ACTATGATCGACACA
1 CACAAAGCCATCAGTAATAGTGA-TATGATCGACACA
23607253 AAGCCATTAG
Statistics
Matches: 133, Mismatches: 18, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
62 1 0.01
63 7 0.05
64 120 0.90
65 5 0.04
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.21
Consensus pattern (64 bp):
CACAAAGCCATCAGTAATAGTGATATGATCGACACACAACCATCGATAACGATAACATGATCGG
Found at i:23607245 original size:96 final size:96
Alignment explanation
Indices: 23607025--23607252 Score: 264
Period size: 96 Copynumber: 2.4 Consensus size: 96
23607015 ATGTGATTGA
* *
23607025 CACAAAGCCATCAGTAGTAGTGATATGATCGACATACAACCATCGATAACGATAACATGATCGGC
1 CACAAAGCCATCAGTAATAGTGATATGATCGACACACAACCATCGATAACGATAACATGATCGGC
* ** *
23607090 ACAAAGCCATCAGTAATTGTGATATGATTGG
66 ACAAAGCCATCAGCAACGGTGATATGATCGG
* * * * * *
23607121 CACACAA-TCATCAGTAACAGTGAAATGATCGGCACACAACCATCGATAACGGTAATATGATCGG
1 CACA-AAGCCATCAGTAATAGTGATATGATCGACACACAACCATCGATAACGATAACATGATCGG
* * *
23607185 TACAATGCCATTAGCAACGGT-ACTATGATCGG
65 CACAAAGCCATCAGCAACGGTGA-TATGATCGG
*
23607217 CACAAAGCCATCAGTAATGGT-ACTATGATCGACACA
1 CACAAAGCCATCAGTAATAGTGA-TATGATCGACACA
23607253 AAGCCATTAG
Statistics
Matches: 108, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
95 4 0.04
96 102 0.94
97 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.21
Consensus pattern (96 bp):
CACAAAGCCATCAGTAATAGTGATATGATCGACACACAACCATCGATAACGATAACATGATCGGC
ACAAAGCCATCAGCAACGGTGATATGATCGG
Found at i:23607259 original size:64 final size:63
Alignment explanation
Indices: 23607081--23607262 Score: 174
Period size: 64 Copynumber: 2.8 Consensus size: 63
23607071 TAACGATAAC
* * * * *
23607081 ATGATCGGCACAAAGCCATCAGTAATTGTGATATGATTGGCACACAA-TCATCAGTAACAGTGAA
1 ATGATCGGCACAAAGCCATCAGTAATGGT-ATATGATCGGCACA-AAGCCATTAGCAACAGTGAA
* * * *
23607145 ATGATCGGCACACAA-CCATC-GATAACGGTAATATGATCGGTACAATGCCATTAGCAACGGT-A
1 ATGATCGGCACA-AAGCCATCAG-TAATGGT-ATATGATCGGCACAAAGCCATTAGCAACAGTGA
*
23607207 CT
63 -A
*
23607209 ATGATCGGCACAAAGCCATCAGTAATGGTACTATGATCGACACAAAGCCATTAG
1 ATGATCGGCACAAAGCCATCAGTAATGGTA-TATGATCGGCACAAAGCCATTAG
23607263 TAGCATCGCA
Statistics
Matches: 96, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
63 6 0.06
64 87 0.91
65 3 0.03
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.22
Consensus pattern (63 bp):
ATGATCGGCACAAAGCCATCAGTAATGGTATATGATCGGCACAAAGCCATTAGCAACAGTGAA
Found at i:23607518 original size:27 final size:27
Alignment explanation
Indices: 23607488--23607839 Score: 436
Period size: 27 Copynumber: 13.1 Consensus size: 27
23607478 AAAAAAATAA
* *
23607488 TCATTTTACCTTACAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
23607515 TCATTTTACCTTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
23607542 TCATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
23607569 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
23607596 TCATTTTACCCTACA-GGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
* *
23607622 TCATTTTACCTTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
23607649 TTATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
23607676 TCATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
* * * *
23607703 TTATTTTACTCTATAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
* *
23607730 TTATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
23607757 TCATTTTACCCTACTGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
** *
23607784 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTACAGGGGTATTACGG
** *
23607811 TCATTTTACCCTTTAGGGGTATTTCGG
1 TCATTTTACCCTACAGGGGTATTACGG
23607838 TC
1 TC
23607840 TAGATATCGA
Statistics
Matches: 290, Mismatches: 34, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 24 0.08
27 266 0.92
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:23609677 original size:14 final size:14
Alignment explanation
Indices: 23609658--23609689 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
23609648 TCTCTAAGTT
23609658 AGAAATGTTGCATG
1 AGAAATGTTGCATG
23609672 AGAAATGTTGCATG
1 AGAAATGTTGCATG
23609686 AGAA
1 AGAA
23609690 GTTAGACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (14 bp):
AGAAATGTTGCATG
Found at i:23629242 original size:16 final size:17
Alignment explanation
Indices: 23629221--23629255 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
23629211 AATTTTAATT
*
23629221 AATTAATTAA-TTTCTC
1 AATTAAATAATTTTCTC
23629237 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
23629254 AA
1 AA
23629256 CCCGATTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:23631557 original size:41 final size:41
Alignment explanation
Indices: 23631512--23631682 Score: 211
Period size: 41 Copynumber: 4.2 Consensus size: 41
23631502 TTATACTTTG
* *
23631512 AATTGCACATATGTGCCCTTGTTTGTTA-TTCGGTACCCCTA
1 AATTGCACATAAGTGCCCCTGTTTG-TACTTCGGTACCCCTA
*
23631553 AATTGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTG
1 AATTGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * * *
23631594 AATTCCACATAAGTGCCCCTGTTTGTACTTCAGTACCCTTG
1 AATTGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * * *
23631635 AACTGCACATATGTGCCCCTATTTGTACTACGGTACCCC-A
1 AATTGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
*
23631675 AATAGCAC
1 AATTGCAC
23631683 TTACATTCCC
Statistics
Matches: 113, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 8 0.07
41 105 0.93
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (41 bp):
AATTGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:23632540 original size:42 final size:42
Alignment explanation
Indices: 23632481--23632584 Score: 190
Period size: 42 Copynumber: 2.5 Consensus size: 42
23632471 CTAGCACATG
*
23632481 GCCTGGCACACGGGCGTGTGAGGCCATTTTGAGAGTTACACA
1 GCCTGGCACACGGGCGTGTGAGGCCATTTCGAGAGTTACACA
23632523 GCCTGGCACACGGGCGTGTGAGGCCATTTCGAGAGTTACACA
1 GCCTGGCACACGGGCGTGTGAGGCCATTTCGAGAGTTACACA
*
23632565 GCCTGGCACACGGGCATGTG
1 GCCTGGCACACGGGCGTGTG
23632585 GCTTGGCTGT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.20, C:0.26, G:0.35, T:0.19
Consensus pattern (42 bp):
GCCTGGCACACGGGCGTGTGAGGCCATTTCGAGAGTTACACA
Found at i:23644118 original size:32 final size:29
Alignment explanation
Indices: 23644070--23644128 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 29
23644060 AGGTGGTGTA
23644070 AAAGGGGAGGAGAAAAAAGAGAG-AGGAGC
1 AAAGGGGAGGAGAAAAAAG-GAGTAGGAGC
23644099 AAAGGAGGAGGATGGAAAAAAGGAGTAGGA
1 AAAGG-GGAGGA--GAAAAAAGGAGTAGGA
23644129 AAATAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.19
30 6 0.23
31 3 0.12
32 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.44, T:0.03
Consensus pattern (29 bp):
AAAGGGGAGGAGAAAAAAGGAGTAGGAGC
Found at i:23655344 original size:14 final size:15
Alignment explanation
Indices: 23655324--23655358 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
23655314 CATTTAATTA
23655324 GAAAATTAA-TTAAT
1 GAAAATTAATTTAAT
*
23655338 TAAAATTAATTTAAT
1 GAAAATTAATTTAAT
23655353 GAAAAT
1 GAAAAT
23655359 GTCTATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (15 bp):
GAAAATTAATTTAAT
Found at i:23661974 original size:27 final size:26
Alignment explanation
Indices: 23661936--23662187 Score: 294
Period size: 26 Copynumber: 9.5 Consensus size: 26
23661926 GGCCATAATA
23661936 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCA-TTTACCCTATGAGGGTATTTCG
23661963 GTCATTCTACCCTATG-GGGTTATTTCG
1 GTCATT-TACCCTATGAGGG-TATTTCG
23661990 GTCATTTACCCTAT-AGGGCTATTTCG
1 GTCATTTACCCTATGAGGG-TATTTCG
23662016 GTCATTTACCCTATGAGGGTATTTCG
1 GTCATTTACCCTATGAGGGTATTTCG
* * *
23662042 GTCATTTTACACTATAAGGGTATTTTG
1 GTCA-TTTACCCTATGAGGGTATTTCG
* * *
23662069 ATCATTTACCTTATGGGGGTATTTCG
1 GTCATTTACCCTATGAGGGTATTTCG
* *
23662095 ATCATTTACCCTATGGGGGTATTTCG
1 GTCATTTACCCTATGAGGGTATTTCG
* * **
23662121 ATCATTTTACCCAATG-GGAGTATTTTA
1 GTCA-TTTACCCTATGAGG-GTATTTCG
*
23662148 GTCATTTTATCCTATGAGGGTATTTCG
1 GTCA-TTTACCCTATGAGGGTATTTCG
23662175 GTCATTTACCCTA
1 GTCATTTACCCTA
23662188 CATAGATATA
Statistics
Matches: 197, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
26 104 0.53
27 91 0.46
28 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (26 bp):
GTCATTTACCCTATGAGGGTATTTCG
Found at i:23662042 original size:79 final size:77
Alignment explanation
Indices: 23661936--23662187 Score: 315
Period size: 79 Copynumber: 3.2 Consensus size: 77
23661926 GGCCATAATA
* *
23661936 GTCATTTTACCCTATGAGGGTATTTCGGTCATTCTACCCTATGGGGTTATTTCGGTCATTTACCC
1 GTCA-TTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGG-TATTTTGGTCATTTACCC
23662001 TATAGGGCTATTTCG
64 TATAGGG-TATTTCG
* * * *
23662016 GTCATTTACCCTATGAGGGTATTTCGGTCATTTTACACTATAAGGGTATTTTGATCATTTACCTT
1 GTCATTTACCCTATGAGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTTGGTCATTTACCCT
*
23662081 ATGGGGGTATTTCG
65 AT-AGGGTATTTCG
* * * * * *
23662095 ATCATTTACCCTATGGGGGTATTTCGATCATTTTACCCAATGGGAGTATTTTAGTCATTTTATCC
1 GTCATTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGG-GTATTTTGGTCA-TTTACCC
23662160 TATGAGGGTATTTCG
64 TAT-AGGGTATTTCG
23662175 GTCATTTACCCTA
1 GTCATTTACCCTA
23662188 CATAGATATA
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
78 2 0.01
79 106 0.71
80 41 0.28
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (77 bp):
GTCATTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGTATTTTGGTCATTTACCCTA
TAGGGTATTTCG
Found at i:23672113 original size:14 final size:14
Alignment explanation
Indices: 23672094--23672125 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
23672084 CTGACATGTC
23672094 ATTACTCAAAAATA
1 ATTACTCAAAAATA
*
23672108 ATTACTCATAAATA
1 ATTACTCAAAAATA
23672122 ATTA
1 ATTA
23672126 ACTTAATCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (14 bp):
ATTACTCAAAAATA
Found at i:23672977 original size:17 final size:18
Alignment explanation
Indices: 23672945--23672988 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
23672935 TATTGATACT
*
23672945 AAATCAATACCTTTTTTA
1 AAATCGATACCTTTTTTA
23672963 AAATCGATACC-TTTTTA
1 AAATCGATACCTTTTTTA
23672980 AAATCGATA
1 AAATCGATA
23672989 ACAAAATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (18 bp):
AAATCGATACCTTTTTTA
Found at i:23674287 original size:21 final size:21
Alignment explanation
Indices: 23674243--23674287 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
23674233 CATTCACTTA
**
23674243 GCACAATCAAACTCATATTTC
1 GCACAATCAAACTCATATCGC
23674264 GCACAATCAAAC-CTATATCGC
1 GCACAATCAAACTC-ATATCGC
23674285 GCA
1 GCA
23674288 TATTAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.38, C:0.31, G:0.09, T:0.22
Consensus pattern (21 bp):
GCACAATCAAACTCATATCGC
Found at i:23690027 original size:17 final size:16
Alignment explanation
Indices: 23689999--23690051 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
23689989 TTTGGTTCGC
23689999 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23690015 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
23690032 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23690048 TGTA
1 TGTA
23690052 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23690116 original size:44 final size:45
Alignment explanation
Indices: 23690032--23690122 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23690022 GGATTAGAGG
* * *
23690032 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
23690077 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
23690121 TG
1 TG
23690123 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:23690374 original size:157 final size:157
Alignment explanation
Indices: 23690174--23690490 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
23690164 TAGAATACCC
*
23690174 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
23690239 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAATA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA-A
23690304 ATATATAATTTAATAAAATTCTT-ATAA
130 ATATATAATTTAATAAAATTCTTAATAA
* *
23690331 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
23690396 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23690461 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
23690488 TTA
1 TTA
23690491 ATATTCTTAT
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 24 0.16
157 128 0.84
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23690461 original size:16 final size:16
Alignment explanation
Indices: 23690424--23690465 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23690414 TTAATCATAT
*
23690424 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23690440 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23690455 TTAAAATATAT
1 TTAAAATATAT
23690466 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23690472 original size:14 final size:15
Alignment explanation
Indices: 23690433--23690474 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23690423 TTTAAACATA
*
23690433 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23690448 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23690462 A-TATAATTTAATA
1 ATTATAATTAAATA
23690475 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23690561 original size:120 final size:121
Alignment explanation
Indices: 23690427--23690719 Score: 502
Period size: 120 Copynumber: 2.4 Consensus size: 121
23690417 ATCATATTTA
23690427 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
23690492 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-GT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATGTG
23690547 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23690612 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
* * *
23690668 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
23690720 TAAAATAATT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 3 0.02
120 160 0.97
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
Found at i:23690592 original size:14 final size:15
Alignment explanation
Indices: 23690553--23690594 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23690543 AAGTAACATA
*
23690553 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23690568 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23690582 A-TATAATTTAATA
1 ATTATAATTAAATA
23690595 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23695315 original size:16 final size:15
Alignment explanation
Indices: 23695288--23695321 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
23695278 ATAACTAGTA
*
23695288 TATAATTATATTTAT
1 TATAATTATATTAAT
23695303 TATAATATATATTAAT
1 TATAAT-TATATTAAT
23695319 TAT
1 TAT
23695322 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:23705461 original size:29 final size:28
Alignment explanation
Indices: 23705422--23705478 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
23705412 ATCGTTACTT
23705422 TATTAATTTATTAATT-ATATATGAATTAA
1 TATTAATTTATTAATTGA-ATAT-AATTAA
* *
23705451 TATTATTTTATTTATTGAATATAATTAA
1 TATTAATTTATTAATTGAATATAATTAA
23705479 GAGGAGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 18 0.72
30 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (28 bp):
TATTAATTTATTAATTGAATATAATTAA
Found at i:23706258 original size:6 final size:6
Alignment explanation
Indices: 23706247--23706271 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23706237 TTTTATATAT
23706247 TATAGA TATAGA TATAGA TATAGA T
1 TATAGA TATAGA TATAGA TATAGA T
23706272 GGATGAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (6 bp):
TATAGA
Found at i:23707417 original size:17 final size:19
Alignment explanation
Indices: 23707395--23707433 Score: 55
Period size: 17 Copynumber: 2.1 Consensus size: 19
23707385 TGAGGATGTA
23707395 TTAATTTT-TATG-TTTTT
1 TTAATTTTATATGATTTTT
23707412 TTAATTTTGATATGATTTTT
1 TTAATTTT-ATATGATTTTT
23707432 TT
1 TT
23707434 TCTTCTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
19 4 0.21
20 7 0.37
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (19 bp):
TTAATTTTATATGATTTTT
Found at i:23711549 original size:6 final size:7
Alignment explanation
Indices: 23711530--23711555 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23711520 TATGAGTTTC
23711530 ATAAAAA
1 ATAAAAA
23711537 ATAAAAA
1 ATAAAAA
23711544 ATAAAAA
1 ATAAAAA
23711551 ATAAA
1 ATAAA
23711556 CAACAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
ATAAAAA
Found at i:23714795 original size:113 final size:112
Alignment explanation
Indices: 23714656--23714925 Score: 272
Period size: 113 Copynumber: 2.4 Consensus size: 112
23714646 TCTCAAGACC
* * * * ** *
23714656 AAAACGCATCGTTTTTGTCTTGATGTATACAATAATTAGTGGCGATTATGATAAAACGCC-GCTA
1 AAAACGCATCGTTTTGGTATCGATGTATACAAGAATTAGTGGCGATTACAAAAAAACGCCAG-TA
* * * *
23714720 AAGCAAGTATTAGCGGCGCATTGCGGGAAGTGCCGCAAAAATCTTAACG
65 AAACAAGTATTAGCGGCGC-TTACGGAAAGCGCCGCAAAAATCTTAACG
** *
23714769 AAAACGCATCGTTTTGGTATCGATGTATATTAGAATTAGTGGCGTTTACAAAAAAACGCCAGTAA
1 AAAACGCATCGTTTTGGTATCGATGTATACAAGAATTAGTGGCGATTACAAAAAAACGCCAGTAA
* ** *
23714834 AACAAGTCTTAGCGGCGCTTACGGAAAGCGCCGCAAAATATGATAACC
66 AACAAGTATTAGCGGCGCTTACGGAAAGCGCCGCAAAA-ATCTTAACG
* ** * * * **
23714882 AAAATGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGGCG
1 AAAACGCATCGTTTTGGTATCGATGTATACAAGAATTAGTGGCG
23714926 CTTTATAGAA
Statistics
Matches: 131, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
112 17 0.13
113 113 0.86
114 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (112 bp):
AAAACGCATCGTTTTGGTATCGATGTATACAAGAATTAGTGGCGATTACAAAAAAACGCCAGTAA
AACAAGTATTAGCGGCGCTTACGGAAAGCGCCGCAAAAATCTTAACG
Found at i:23714982 original size:75 final size:75
Alignment explanation
Indices: 23714859--23715000 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 75
23714849 CGCTTACGGA
* * * * *
23714859 AAGCGCCGCAAAATATGATAACCAAAATGCAGAGTTTTGATCTTGATGTATATTAGAATTAGTGG
1 AAGCGCCGCAAAAAATGATAACCAAAATGCAGAGGTTTGATCTCGATGTATAATACAATTAGTGG
23714924 CGCTTTATAG
66 CGCTTTATAG
* * *
23714934 AAGCGCCGCAAAAAATGTTAACCAAAATGCAGTGGTTTGGTCTCGATGTATAATACAATTAGTGG
1 AAGCGCCGCAAAAAATGATAACCAAAATGCAGAGGTTTGATCTCGATGTATAATACAATTAGTGG
23714999 CG
66 CG
23715001 TTAGGGAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 59 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (75 bp):
AAGCGCCGCAAAAAATGATAACCAAAATGCAGAGGTTTGATCTCGATGTATAATACAATTAGTGG
CGCTTTATAG
Found at i:23715016 original size:75 final size:74
Alignment explanation
Indices: 23714842--23715017 Score: 183
Period size: 75 Copynumber: 2.3 Consensus size: 74
23714832 AAAACAAGTC
* * * * * *
23714842 TTAGCGGCGCTTACGGAAAGCGCCGCAAAATATGATAACCAAAATGCAGAGTTTTGATCTTGATG
1 TTAGTGGCGCTTA-GAAAAACGCCGCAAAAAATGATAACCAAAATGCAGAGGTTTGATCTCGATG
* *
23714907 TATATTAGAA
65 TATAATACAA
* * * * * *
23714917 TTAGTGGCGCTTTATAGAAGCGCCGCAAAAAATGTTAACCAAAATGCAGTGGTTTGGTCTCGATG
1 TTAGTGGCGC-TTAGAAAAACGCCGCAAAAAATGATAACCAAAATGCAGAGGTTTGATCTCGATG
23714982 TATAATACAA
65 TATAATACAA
23714992 TTAGTGGCG-TTAGGGAAAAACGCCGC
1 TTAGTGGCGCTTA--GAAAAACGCCGC
23715018 TAAAGCATAA
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
73 3 0.04
75 77 0.93
76 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26
Consensus pattern (74 bp):
TTAGTGGCGCTTAGAAAAACGCCGCAAAAAATGATAACCAAAATGCAGAGGTTTGATCTCGATGT
ATAATACAA
Found at i:23715132 original size:114 final size:114
Alignment explanation
Indices: 23714932--23715379 Score: 432
Period size: 114 Copynumber: 3.9 Consensus size: 114
23714922 GGCGCTTTAT
* * * * * * * * *
23714932 AGAAGCGCCGCAAAAAATGTTA-ACCAAAATGCAGTGGTTTGGTCTCGATGTATAATACAATTAG
1 AGAAGCGCCGCAAGATATG-CACACCAAAACGCAG-AGTTTGGTCTTGAGGTATATTAGAATTAG
* *
23714996 TGGCG-TTA-GGGAAAAACGCCGCTAAAGCATAAC-ATTAGCGGCGATTTTCT
64 TGGCGCTTACTGG-AAAACGCCGCTAAAGCAT-ACTATTAGCGGCGATTTTCC
* * *
23715046 AGAATCACCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGATTAGTG
1 AGAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATTAGTG
* *
23715111 GCGCTTACTGTAAAACGCCGCTAAAGCGTACTATTAGCGGCG-TTTCTCC
66 GCGCTTACTGGAAAACGCCGCTAAAGCATACTATTAGCGGCGATTT-TCC
* * * * * * *
23715160 AAAAGCGCTGCTAA-AT-TTCTTA-ACCAAAACTCAGAGTTTTGGTCTTGATGTATACTATAATT
1 AGAAGCGCCGC-AAGATATGC--ACACCAAAACGCAGAG-TTTGGTCTTGAGGTATATTAGAATT
** * * *
23715222 AGTGGCGCTTAC-GAGAAAACGCCGCTAAATAATAGTATTAGCGGCCA-TTT-G
62 AGTGGCGCTTACTG-GAAAACGCCGCTAAAGCATACTATTAGCGGCGATTTTCC
23715273 AGTTAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATTAG
1 AG--AAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATTAG
* * *
23715338 TGGCGCTGATTGGAAAACGCCGCTAAAGTATACTATTAGCGG
64 TGGCGCTTACTGGAAAACGCCGCTAAAGCATACTATTAGCGG
23715380 TGCGTTTTTA
Statistics
Matches: 272, Mismatches: 45, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
113 37 0.14
114 144 0.53
115 89 0.33
116 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (114 bp):
AGAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATTAGTG
GCGCTTACTGGAAAACGCCGCTAAAGCATACTATTAGCGGCGATTTTCC
Found at i:23715357 original size:229 final size:228
Alignment explanation
Indices: 23714951--23715379 Score: 605
Period size: 229 Copynumber: 1.9 Consensus size: 228
23714941 GCAAAAAATG
* *
23714951 TTAACCAAAATGCAGTGGTTTGGTCTCGATGTATAATACAATTAGTGGCGTTAGGGAAAAACGCC
1 TTAACCAAAATGCAGAGGTTTGGTCTCGATGTATAATACAATTAGTGGCGTTAGAGAAAAACGCC
* * * *
23715016 GCTAAAGCATAACATTAGCGGCGATTTTCTAGAATCACCGCAAGATATGCACACCAAAACGCAGA
66 GCTAAAGAATAACATTAGCGGCCATTTTCGAGAAGCACCGCAAGATATGCACACCAAAACGCAGA
* * * *
23715081 GTTTGGTCTTGAGGTATATTAGGATTAGTGGCGCTTACTGTAAAACGCCGCTAAAGCGTACTATT
131 GTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTGACTGGAAAACGCCGCTAAAGCATACTATT
23715146 AGCGGCGTTTCTCCAAAAGCGCTGCTAAATTTC
196 AGCGGCGTTTCTCCAAAAGCGCTGCTAAATTTC
* * * *
23715179 TTAACCAAAACT-CAGAGTTTTGGTCTTGATGTATACTATAATTAGTGGCGCTTACGAG-AAAAC
1 TTAACCAAAA-TGCAGAGGTTTGGTCTCGATGTATAATACAATTAGTGGCG-TTA-GAGAAAAAC
* ** *
23715242 GCCGCTAAATAATAGTATTAGCGGCCA-TTT-GAGTTAAGCGCCGCAAGATATGCACACCAAAAC
63 GCCGCTAAAGAATAACATTAGCGGCCATTTTCGAG--AAGCACCGCAAGATATGCACACCAAAAC
* *
23715305 GCAGAGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTGATTGGAAAACGCCGCTAAAGTATA
126 GCAGAGTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTGACTGGAAAACGCCGCTAAAGCATA
23715370 CTATTAGCGG
191 CTATTAGCGG
23715380 TGCGTTTTTA
Statistics
Matches: 176, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
227 2 0.01
228 46 0.26
229 126 0.72
230 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (228 bp):
TTAACCAAAATGCAGAGGTTTGGTCTCGATGTATAATACAATTAGTGGCGTTAGAGAAAAACGCC
GCTAAAGAATAACATTAGCGGCCATTTTCGAGAAGCACCGCAAGATATGCACACCAAAACGCAGA
GTTTGGTCTTGAGGTATATTAGAATTAGTGGCGCTGACTGGAAAACGCCGCTAAAGCATACTATT
AGCGGCGTTTCTCCAAAAGCGCTGCTAAATTTC
Found at i:23715437 original size:229 final size:229
Alignment explanation
Indices: 23714978--23715549 Score: 592
Period size: 229 Copynumber: 2.5 Consensus size: 229
23714968 GTTTGGTCTC
* * * * ** *
23714978 GATGTATAATACAATTAGTGGCGTT-A-GGGAAAAACGCCGCTAAAGCATAACATTAGCGGCGAT
1 GATGTATACTAGAATTAGTGGCGTTCACGAG-AAAACGCCGCTAAAGAATAGTATTAGCGGCGCT
* * * * *
23715041 TTTCTAG-AATCACCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGGA
65 ATT-TGGTAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAA
* * * *
23715105 TTAGTGGCGCTTACTGTAAAACGCCGCTAAAGCGTACTATTAGCGGCGTTTCTCCAAAAGCGCTG
129 TTAGTGGCGCTGACTGGAAAACGCCGCTAAAGCATACTATTAGCGGCGTTTCTCCAAAAGCGCCG
* * ****
23715170 CTAAATTTCTTAACCAAAACTCAGAGTTTTGGTCTT
194 CTAAATATATTAACCAAAACTCAGAGTTCAAATCTT
* *
23715206 GATGTATACTATAATTAGTGGCGCTT-ACGAGAAAACGCCGCTAAATAATAGTATTAGCGGC-C-
1 GATGTATACTAGAATTAGTGGCG-TTCACGAGAAAACGCCGCTAAAGAATAGTATTAGCGGCGCT
23715268 ATTTGAGTTAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGA
65 ATTTG-G-TAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGA
* * * * *
23715333 ATTAGTGGCGCTGATTGGAAAACGCCGCTAAAGTATACTATTAGCGGTGCGTTT-T-TAGATGCG
128 ATTAGTGGCGCTGACTGGAAAACGCCGCTAAAGCATACTATTAGC-G-GCGTTTCTCCAAAAGCG
* * *
23715396 CCGC-AGAATATATTAACCGAAA-TGCTGCGTTCAAATCTT
191 CCGCTA-AATATATTAACCAAAACT-CAGAGTTCAAATCTT
* * * * * *
23715435 GATGTATACTGGAATTAGTGGCGTTCACGATAAATCGCCGCTAAAGCATATTATTAGCGGCGCTT
1 GATGTATACTAGAATTAGTGGCGTTCACGAGAAAACGCCGCTAAAGAATAGTATTAGCGGCGCTA
* *
23715500 TTTGGTAAGCGCCGCAAAATAT-CTTA-ACCAAAACGCACAGTTTTGGTCTT
66 TTTGGTAAGCGCCGCAAGATATGC--ACACCAAAACGCAGAG-TTTGGTCTT
23715550 AACCATGCAT
Statistics
Matches: 288, Mismatches: 41, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
226 1 0.00
227 3 0.01
228 26 0.09
229 232 0.81
230 16 0.06
231 10 0.03
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (229 bp):
GATGTATACTAGAATTAGTGGCGTTCACGAGAAAACGCCGCTAAAGAATAGTATTAGCGGCGCTA
TTTGGTAAGCGCCGCAAGATATGCACACCAAAACGCAGAGTTTGGTCTTGAGGTATATTAGAATT
AGTGGCGCTGACTGGAAAACGCCGCTAAAGCATACTATTAGCGGCGTTTCTCCAAAAGCGCCGCT
AAATATATTAACCAAAACTCAGAGTTCAAATCTT
Found at i:23716305 original size:17 final size:17
Alignment explanation
Indices: 23716272--23716323 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
23716262 TATAATACAT
*
23716272 TAATTTAATAA-TATAAA
1 TAATTT-ATAATTTTAAA
23716289 TAATTTATAATTTTAAA
1 TAATTTATAATTTTAAA
*
23716306 T-ATTGATAATATTTAAA
1 TAATTTATAAT-TTTAAA
23716323 T
1 T
23716324 TTTAATGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 12 0.39
17 19 0.61
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TAATTTATAATTTTAAA
Found at i:23717002 original size:44 final size:44
Alignment explanation
Indices: 23716952--23717045 Score: 161
Period size: 44 Copynumber: 2.1 Consensus size: 44
23716942 AATTCTTGCG
* *
23716952 TCCTTCTTGCCCAATTTCTTGAATTCCCAAATCCGTAAATCGCC
1 TCCTTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCC
*
23716996 TCCTTCTTGCCGAATTTCTTGAAATCCCAAATCCCTAAATCGCC
1 TCCTTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCC
23717040 TCCTTC
1 TCCTTC
23717046 CTCCTTCCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.22, C:0.35, G:0.09, T:0.34
Consensus pattern (44 bp):
TCCTTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCC
Found at i:23718701 original size:19 final size:19
Alignment explanation
Indices: 23718677--23718738 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
23718667 TTTAAAGTTA
23718677 TATTTTAAATATTTTATTT
1 TATTTTAAATATTTTATTT
** *
23718696 TATTTT-AATCA--CGAATT
1 TATTTTAAAT-ATTTTATTT
23718713 T-TTTTAAATATTTTATTT
1 TATTTTAAATATTTTATTT
23718731 TATTTTAA
1 TATTTTAA
23718739 TCACGAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
16 5 0.16
17 7 0.22
18 7 0.22
19 13 0.41
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (19 bp):
TATTTTAAATATTTTATTT
Found at i:23718723 original size:35 final size:35
Alignment explanation
Indices: 23718679--23718760 Score: 146
Period size: 35 Copynumber: 2.3 Consensus size: 35
23718669 TAAAGTTATA
**
23718679 TTTTAAATATTTTATTTTATTTTAATCACGAATTT
1 TTTTAAATATTTTATTTTATTTTAATCACGAAAAT
23718714 TTTTAAATATTTTATTTTATTTTAATCACGAAAAT
1 TTTTAAATATTTTATTTTATTTTAATCACGAAAAT
23718749 TTTTAAATATTT
1 TTTTAAATATTT
23718761 AAATCTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (35 bp):
TTTTAAATATTTTATTTTATTTTAATCACGAAAAT
Found at i:23718811 original size:9 final size:9
Alignment explanation
Indices: 23718787--23718864 Score: 63
Period size: 9 Copynumber: 8.7 Consensus size: 9
23718777 CAAATTTCAC
*
23718787 AACTTACGT
1 AACTTACAT
*
23718796 AATTTACAT
1 AACTTACAT
23718805 AACTTACAT
1 AACTTACAT
23718814 AA-TT-CAT
1 AACTTACAT
23718821 AACTTACAT
1 AACTTACAT
* *
23718830 AATTTAAATTT
1 AACTTACA--T
*
23718841 ATA-ATACAT
1 A-ACTTACAT
23718850 AACTTACAT
1 AACTTACAT
23718859 AACTTA
1 AACTTA
23718865 TTAATATATA
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
7 5 0.09
8 5 0.09
9 39 0.71
11 5 0.09
12 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.01, T:0.38
Consensus pattern (9 bp):
AACTTACAT
Found at i:23718823 original size:16 final size:16
Alignment explanation
Indices: 23718782--23718860 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
23718772 AAGTTCAAAT
* *
23718782 TTCACAACTTACGTAA
1 TTCATAACTTACATAA
23718798 TTTACATAACTTACATAA
1 -TT-CATAACTTACATAA
23718816 TTCATAACTTACATAA
1 TTCATAACTTACATAA
* *
23718832 TT--TAAATT-TATAA
1 TTCATAACTTACATAA
*
23718845 TACATAACTTACATAA
1 TTCATAACTTACATAA
23718861 CTTATTAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
13 5 0.10
14 5 0.10
15 5 0.10
16 20 0.39
17 4 0.08
18 12 0.24
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.38
Consensus pattern (16 bp):
TTCATAACTTACATAA
Found at i:23718974 original size:23 final size:22
Alignment explanation
Indices: 23718924--23718987 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
23718914 TTAAAAATTG
23718924 ATACATTACATAACTTACATAAC
1 ATACA-TACATAACTTACATAAC
*
23718947 CTACATACATAAGCTTACAT---
1 ATACATACATAA-CTTACATAAC
*
23718967 ATA-ATACATAACTTATATAAC
1 ATACATACATAACTTACATAAC
23718988 TTAAATTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
18 6 0.18
19 8 0.24
20 2 0.06
22 7 0.21
23 11 0.32
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.31
Consensus pattern (22 bp):
ATACATACATAACTTACATAAC
Found at i:23719128 original size:34 final size:36
Alignment explanation
Indices: 23719041--23719134 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 36
23719031 ATCATATCAC
** *
23719041 AACTTACATAACTTACATAATAATACATACCGTACATA
1 AACTTACATAACTTACATAAT-ATACATA-CAAACAAA
* * *
23719079 AA-TTAAATAAGTTACAGAATATACA-A-AAACAAA
1 AACTTACATAACTTACATAATATACATACAAACAAA
23719112 AACTTACATAACTTACATAATAT
1 AACTTACATAACTTACATAATAT
23719135 CTTACATAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
33 6 0.13
34 17 0.37
35 1 0.02
36 5 0.11
37 15 0.33
38 2 0.04
ACGTcount: A:0.53, C:0.16, G:0.03, T:0.28
Consensus pattern (36 bp):
AACTTACATAACTTACATAATATACATACAAACAAA
Found at i:23719140 original size:12 final size:12
Alignment explanation
Indices: 23719119--23719301 Score: 115
Period size: 12 Copynumber: 15.2 Consensus size: 12
23719109 AAAAACTTAC
23719119 ATAACTTACATA
1 ATAACTTACATA
*
23719131 ATATCTTACATA
1 ATAACTTACATA
23719143 ATAACTTACATA
1 ATAACTTACATA
*
23719155 ATATCTTACATA
1 ATAACTTACATA
*
23719167 ATAACTTACATC
1 ATAACTTACATA
* *
23719179 ATAATGCGTACCCTA
1 ATAA--CTTA-CATA
*
23719194 CATAAATT--A-A
1 -ATAACTTACATA
*
23719204 ATAAGTTACATA
1 ATAACTTACATA
** * *
23719216 ATACACAAAAACA
1 ATA-ACTTACATA
* * *
23719229 AAAACGTA-GT-
1 ATAACTTACATA
*
23719239 GTAACTTACATA
1 ATAACTTACATA
* *
23719251 ATATCTTACACA
1 ATAACTTACATA
23719263 ATAACTTACATA
1 ATAACTTACATA
*
23719275 ATATCTTACATA
1 ATAACTTACATA
*
23719287 ATGACTTACATA
1 ATAACTTACATA
23719299 ATA
1 ATA
23719302 CATAATTTAC
Statistics
Matches: 126, Mismatches: 35, Indels: 20
0.70 0.19 0.11
Matches are distributed among these distances:
9 6 0.05
10 6 0.05
11 2 0.02
12 96 0.76
13 6 0.05
14 4 0.03
15 2 0.02
16 4 0.03
ACGTcount: A:0.47, C:0.17, G:0.04, T:0.32
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:23719151 original size:24 final size:24
Alignment explanation
Indices: 23719119--23719301 Score: 133
Period size: 24 Copynumber: 7.6 Consensus size: 24
23719109 AAAAACTTAC
23719119 ATAACTTACATAATATCTTACATA
1 ATAACTTACATAATATCTTACATA
23719143 ATAACTTACATAATATCTTACATA
1 ATAACTTACATAATATCTTACATA
* * *
23719167 ATAACTTACATCATAATGCGTACCCTA
1 ATAACTTACATAAT-AT-CTTA-CATA
* **
23719194 CATAAATT--A-AATAAGTTACATA
1 -ATAACTTACATAATATCTTACATA
** * * * * * *
23719216 ATACACAAAAACAAAAACGTA-GT-
1 ATA-ACTTACATAATATCTTACATA
* *
23719239 GTAACTTACATAATATCTTACACA
1 ATAACTTACATAATATCTTACATA
23719263 ATAACTTACATAATATCTTACATA
1 ATAACTTACATAATATCTTACATA
*
23719287 ATGACTTACATAATA
1 ATAACTTACATAATA
23719302 CATAATTTAC
Statistics
Matches: 120, Mismatches: 29, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
21 3 0.03
22 14 0.12
23 4 0.03
24 76 0.63
25 10 0.08
26 4 0.03
27 3 0.03
28 6 0.05
ACGTcount: A:0.47, C:0.17, G:0.04, T:0.32
Consensus pattern (24 bp):
ATAACTTACATAATATCTTACATA
Found at i:23719294 original size:120 final size:119
Alignment explanation
Indices: 23719048--23719369 Score: 402
Period size: 119 Copynumber: 2.7 Consensus size: 119
23719038 CACAACTTAC
* *
23719048 ATAACTTACATAATAATACATACCGTACATAAATTAAATAAGTTACAGAATATACAAAAACAAAA
1 ATAACTTACATAATAATACATACCCTACATAAATTAAATAAGTTACAGAATACACAAAAACAAAA
* *
23719113 ACTTACATAACTTACATAATATCTTACATAATAACTTACATAATATCTTACATA
66 ACGTACATAACTTACATAATATCTTACACAATAACTTACATAATATCTTACATA
* * * *
23719167 ATAACTTACATCATAATGCGTACCCTACATAAATTAAATAAGTTACATAATACACAAAAACAAAA
1 ATAACTTACATAATAATACATACCCTACATAAATTAAATAAGTTACAGAATACACAAAAACAAAA
**
23719232 ACGTAGTGTAACTTACATAATATCTTACACAATAACTTACATAATATCTTACATA
66 ACGTA-CATAACTTACATAATATCTTACACAATAACTTACATAATATCTTACATA
* * * * * * **
23719287 ATGACTTACATAATACATA-AT---TTACATAACTTACATAAGTTTCATAATACACAACTTAC-A
1 ATAACTTACATAATA-ATACATACCCTACATAAATTAAATAAGTTACAGAATACACAA-AAACAA
* *
23719347 CAACTTACATAACTTACATAATA
64 AAACGTACATAACTTACATAATA
23719370 CATAACTTAT
Statistics
Matches: 176, Mismatches: 24, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
116 14 0.08
117 35 0.20
118 2 0.01
119 63 0.36
120 60 0.34
121 2 0.01
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.30
Consensus pattern (119 bp):
ATAACTTACATAATAATACATACCCTACATAAATTAAATAAGTTACAGAATACACAAAAACAAAA
ACGTACATAACTTACATAATATCTTACACAATAACTTACATAATATCTTACATA
Found at i:23719314 original size:9 final size:9
Alignment explanation
Indices: 23719290--23719378 Score: 91
Period size: 9 Copynumber: 10.6 Consensus size: 9
23719280 TTACATAATG
23719290 ACTTACATA
1 ACTTACATA
23719299 A--TACATA
1 ACTTACATA
*
23719306 ATTTACATA
1 ACTTACATA
23719315 ACTTACATA
1 ACTTACATA
* *
23719324 AGTTTCATA
1 ACTTACATA
*
23719333 A--TACACA
1 ACTTACATA
*
23719340 ACTTACACA
1 ACTTACATA
23719349 ACTTACATA
1 ACTTACATA
23719358 ACTTACATA
1 ACTTACATA
23719367 A--TACATA
1 ACTTACATA
23719374 ACTTA
1 ACTTA
23719379 TTCCTAAATC
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
7 19 0.28
9 49 0.72
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (9 bp):
ACTTACATA
Found at i:23719322 original size:25 final size:25
Alignment explanation
Indices: 23719290--23719374 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
23719280 TTACATAATG
23719290 ACTTACATAA-TACATAATTTACATA
1 ACTTACATAATTACATAA-TTACATA
* *
23719315 ACTTACATAAGTTTCATAA-TACACA
1 ACTTACATAA-TTACATAATTACATA
*
23719340 ACTTACACAACTTACATAACTTACATA
1 ACTTACATAA-TTACATAA-TTACATA
23719367 A--TACATAA
1 ACTTACATAA
23719375 CTTATTCCTA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
25 37 0.76
27 12 0.24
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (25 bp):
ACTTACATAATTACATAATTACATA
Found at i:23719337 original size:34 final size:34
Alignment explanation
Indices: 23719290--23719378 Score: 133
Period size: 34 Copynumber: 2.6 Consensus size: 34
23719280 TTACATAATG
* *
23719290 ACTTACATAATACATAATTTACATAACTTACATA
1 ACTTACATAATACATAACTTACACAACTTACATA
* * *
23719324 AGTTTCATAATACACAACTTACACAACTTACATA
1 ACTTACATAATACATAACTTACACAACTTACATA
23719358 ACTTACATAATACATAACTTA
1 ACTTACATAATACATAACTTA
23719379 TTCCTAAATC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (34 bp):
ACTTACATAATACATAACTTACACAACTTACATA
Found at i:23721006 original size:19 final size:19
Alignment explanation
Indices: 23720979--23721021 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
23720969 GTTCAGAGAA
*
23720979 GCTCCTTCACAGACCAGTG
1 GCTCTTTCACAGACCAGTG
23720998 GCTCTTTCACAGACCAGTG
1 GCTCTTTCACAGACCAGTG
23721017 GCTCT
1 GCTCT
23721022 GAAATCTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.19, C:0.35, G:0.21, T:0.26
Consensus pattern (19 bp):
GCTCTTTCACAGACCAGTG
Found at i:23724882 original size:21 final size:21
Alignment explanation
Indices: 23724852--23724920 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
23724842 CAACAACTTA
* *
23724852 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGAG
* * *
23724873 AAGCAAAGGCTGCAGTGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
*
23724894 AAGCAGATGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
23724915 AAGCAG
1 AAGCAG
23724921 CGAGAGAAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.35, C:0.19, G:0.42, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:23724922 original size:12 final size:12
Alignment explanation
Indices: 23724905--23724932 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
23724895 AGCAGATGCC
23724905 GCAGCGAGAGAA
1 GCAGCGAGAGAA
23724917 GCAGCGAGAGAA
1 GCAGCGAGAGAA
23724929 GCAG
1 GCAG
23724933 AGGTTCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.43, T:0.00
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:23725482 original size:43 final size:42
Alignment explanation
Indices: 23725434--23725661 Score: 219
Period size: 42 Copynumber: 5.4 Consensus size: 42
23725424 GAACATTACT
* *
23725434 TTTAGCGACGTTTTCTTCCTAAGCACAGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTT-TTCCTAAGCACAGCTAAAGATCATGATC
* ** * * *
23725477 TTTAGCGGCGTTTTTTCCAAAGTGCCGCTATAGAAT-ATTA-C
1 TTTAGCGGCGTTTTTTCCTAAGCACAGCTAAAG-ATCATGATC
*
23725518 TTTTAGCGGCGTTTTCTTCCTAAGCGCAGCTAAAGATCATGATC
1 -TTTAGCGGCGTTTT-TTCCTAAGCACAGCTAAAGATCATGATC
* *
23725562 TTTAGCGGCGTTTTTTCCTAAGCACCGCTAAAGAACATGATC
1 TTTAGCGGCGTTTTTTCCTAAGCACAGCTAAAGATCATGATC
** * * * * * *
23725604 TTTAGTAGCGTTTTTTCGGT-AGCGCCGCTAAAGAACTTGAGC
1 TTTAGCGGCGTTTTTTC-CTAAGCACAGCTAAAGATCATGATC
23725646 TTTAGCGGCGTTTTTT
1 TTTAGCGGCGTTTTTT
23725662 TCTATAAGCG
Statistics
Matches: 155, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 105 0.68
43 48 0.31
44 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTTCCTAAGCACAGCTAAAGATCATGATC
Found at i:23725526 original size:42 final size:42
Alignment explanation
Indices: 23725368--23725661 Score: 210
Period size: 42 Copynumber: 7.0 Consensus size: 42
23725358 ATTTGTGAAA
* * * * *
23725368 TAAGCGCCGCGAAAGAACACTACTTTTAGTGGCGTTTTTTACC
1 TAAGCGCAGCTAAAGATCATTACTTTTAGCGGCGTTTTTT-CC
* * *
23725411 -AAGCGTC-GCTATAGAACATTACTTTTAGCGACGTTTTCTTCC
1 TAAGCG-CAGCTAAAGATCATTACTTTTAGCGGCGTTTT-TTCC
* *
23725453 TAAGCACAGCTAAAGATCATGTTC-TTTAGCGGCGTTTTTTCC
1 TAAGCGCAGCTAAAGATCAT-TACTTTTAGCGGCGTTTTTTCC
* * * *
23725495 AAAGTGCCGCTATAGAAT-ATTACTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCAGCTAAAG-ATCATTACTTTTAGCGGCGTTTT-TTCC
*
23725538 TAAGCGCAGCTAAAGATCATGA-TCTTTAGCGGCGTTTTTTCC
1 TAAGCGCAGCTAAAGATCATTACT-TTTAGCGGCGTTTTTTCC
* * * * ** *
23725580 TAAGCACCGCTAAAGAACATGA-TCTTTAGTAGCGTTTTTTCGG
1 TAAGCGCAGCTAAAGATCATTACT-TTTAGCGGCGTTTTTTC-C
* *
23725623 T-AGCGCCGCTAAAGAAC-TTGAGC-TTTAGCGGCGTTTTTT
1 TAAGCGCAGCTAAAGATCATT-A-CTTTTAGCGGCGTTTTTT
23725662 TCTATAAGCG
Statistics
Matches: 206, Mismatches: 31, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
41 3 0.01
42 136 0.66
43 65 0.32
44 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (42 bp):
TAAGCGCAGCTAAAGATCATTACTTTTAGCGGCGTTTTTTCC
Found at i:23725608 original size:85 final size:84
Alignment explanation
Indices: 23725392--23725661 Score: 321
Period size: 85 Copynumber: 3.2 Consensus size: 84
23725382 GAACACTACT
* * *
23725392 TTTAGTGGCGTTTTTTACCAAGCGTCGCTATAGAACATTACTTTTAGCGACGTTTTCTTCCTAAG
1 TTTAGCGGCGTTTTTT-CCAAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTTCCTAAG
* *
23725457 CACAGCTAAAGATCATGTTC
65 CGCAGCTAAAGATCATGATC
* *
23725477 TTTAGCGGCGTTTTTTCCAAAGTGCCGCTATAGAATATTACTTTTAGCGGCGTTTTCTTCCTAAG
1 TTTAGCGGCGTTTTTTCC-AAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTTCCTAAG
23725542 CGCAGCTAAAGATCATGATC
65 CGCAGCTAAAGATCATGATC
* * * ** *
23725562 TTTAGCGGCGTTTTTTCCTAAGCACCGCTAAAGAACATGA-TCTTTAGTAGCGTTTT-TTCGGT-
1 TTTAGCGGCGTTTTTTCC-AAGCGCCGCTATAGAACATTACT-TTTAGCGGCGTTTTCTTC-CTA
* * * *
23725624 AGCGCCGCTAAAGAACTTGAGC
63 AGCGCAGCTAAAGATCATGATC
23725646 TTTAGCGGCGTTTTTT
1 TTTAGCGGCGTTTTTT
23725662 TCTATAAGCG
Statistics
Matches: 162, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
84 40 0.25
85 122 0.75
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (84 bp):
TTTAGCGGCGTTTTTTCCAAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTTCCTAAGC
GCAGCTAAAGATCATGATC
Found at i:23725631 original size:127 final size:127
Alignment explanation
Indices: 23725369--23725661 Score: 319
Period size: 127 Copynumber: 2.3 Consensus size: 127
23725359 TTTGTGAAAT
* * * * * *
23725369 AAGCGCCGCGAAAGAACACTACTTTTAGTGGCGTTTTTTACCAAGCGTCGCTATAGAACATTACT
1 AAGCGCCGCTAAAGAATATTACTTTTAGCGGCGTTTTTTACCAAGCGTCGCTAAAGAACATGACT
* * *
23725434 TTTAGCGACGTTTTCTTCCTAAGCACAGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTCCA
66 TTTAGCGACGTTTTCTTCCTAAGCACAGCTAAAGAACATGATCTTTAGCAGCGTTTTTTCCA
* * *
23725496 AAGTGCCGCTATAGAATATTACTTTTAGCGGCGTTTTCTT-CCTAAGCG-CAGCTAAAGATCATG
1 AAGCGCCGCTAAAGAATATTACTTTTAGCGGCGTTTT-TTACC-AAGCGTC-GCTAAAGAACATG
* * * *
23725559 A-TCTTTAGCGGCGTTTT-TTCCTAAGCACCGCTAAAGAACATGATCTTTAGTAGCGTTTTTTCG
63 ACT-TTTAGCGACGTTTTCTTCCTAAGCACAGCTAAAGAACATGATCTTTAGCAGCGTTTTTTCC
*
23725622 G
127 A
* *
23725623 TAGCGCCGCTAAAGAACT-TGAGC-TTTAGCGGCGTTTTTT
1 AAGCGCCGCTAAAGAA-TATTA-CTTTTAGCGGCGTTTTTT
23725662 TCTATAAGCG
Statistics
Matches: 139, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
126 2 0.01
127 104 0.75
128 33 0.24
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (127 bp):
AAGCGCCGCTAAAGAATATTACTTTTAGCGGCGTTTTTTACCAAGCGTCGCTAAAGAACATGACT
TTTAGCGACGTTTTCTTCCTAAGCACAGCTAAAGAACATGATCTTTAGCAGCGTTTTTTCCA
Found at i:23725842 original size:16 final size:16
Alignment explanation
Indices: 23725821--23725853 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23725811 ATCGCACACC
*
23725821 ACATGTATTTTTGCTG
1 ACATGTATTCTTGCTG
23725837 ACATGTATTCTTGCTG
1 ACATGTATTCTTGCTG
23725853 A
1 A
23725854 TGTGGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.45
Consensus pattern (16 bp):
ACATGTATTCTTGCTG
Found at i:23727325 original size:10 final size:10
Alignment explanation
Indices: 23727310--23727338 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
23727300 CTGTACTAAT
23727310 ATTGTTTCCG
1 ATTGTTTCCG
23727320 ATTGTTTCCG
1 ATTGTTTCCG
23727330 ATTGTTTCC
1 ATTGTTTCC
23727339 TTAATGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.21, G:0.17, T:0.52
Consensus pattern (10 bp):
ATTGTTTCCG
Found at i:23740658 original size:23 final size:22
Alignment explanation
Indices: 23740615--23740658 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
23740605 TTCTAAATCG
23740615 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
23740638 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
23740659 TTAGTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:23740767 original size:45 final size:45
Alignment explanation
Indices: 23740703--23740796 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
23740693 AACAGATACT
* * *
23740703 CGGTGGATTCAGCATATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTAGTAATCAATGATGTC
*
23740748 CGGTGGAATCAGCACATAGCAACCACCTTAGTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTAGTAATCAATGATGTC
23740793 CGGT
1 CGGT
23740797 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTAGTAATCAATGATGTC
Found at i:23742777 original size:4 final size:4
Alignment explanation
Indices: 23742768--23742793 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
23742758 CATTATTTAG
23742768 TTCT TTCT TTCT TTCT TTCT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TT
23742794 TCACGAGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:23749561 original size:13 final size:13
Alignment explanation
Indices: 23749545--23749575 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
23749535 TTATATTGTT
23749545 AACTTATACACAC
1 AACTTATACACAC
*
23749558 AACTTATTCACAC
1 AACTTATACACAC
23749571 AACTT
1 AACTT
23749576 TGAGAGCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (13 bp):
AACTTATACACAC
Found at i:23751016 original size:3 final size:3
Alignment explanation
Indices: 23751008--23751043 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
23750998 ACCATTATAT
23751008 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23751044 GAGTATGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23751363 original size:2 final size:2
Alignment explanation
Indices: 23751356--23751382 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23751346 TTAAAAGAAG
23751356 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
23751383 AAGGAAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23758482 original size:8 final size:8
Alignment explanation
Indices: 23758469--23758493 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23758459 TTTTAAATAA
23758469 TATTTTAT
1 TATTTTAT
23758477 TATTTTAT
1 TATTTTAT
23758485 TATTTTAT
1 TATTTTAT
23758493 T
1 T
23758494 GTTTAGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:23761197 original size:51 final size:50
Alignment explanation
Indices: 23761078--23761262 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 50
23761068 AAAGTGATGG
* * * * ** *
23761078 TCACGTGTGTAGTACTATGTCCAGGCTACTACGTGTACTAGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-AT-GA
*
23761128 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT-TCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAG-TAT-GA
* * * ** *
23761179 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGTCGGATAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-ATGA
23761230 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
23761263 TGAACCGATA
Statistics
Matches: 112, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
50 36 0.32
51 74 0.66
52 1 0.01
53 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTATGA
Found at i:23761204 original size:101 final size:102
Alignment explanation
Indices: 23761078--23761262 Score: 295
Period size: 101 Copynumber: 1.8 Consensus size: 102
23761068 AAAGTGATGG
*
23761078 TCACGTGTGTAGTACTATGTCCAGGCTACTACGTGTACT-AGA-A-TGATAGGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTCCAGGCTACTACGTGT-CTCAGATAGTGAT-GGTCACATGTGTAG
23761140 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
64 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
23761179 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGTCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTCCAGGCTACTACGTGTCTCAGATAGTGATGGTCACATGTGTAGTA
23761244 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
23761263 TGAACCGATA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
100 1 0.01
101 37 0.48
102 35 0.45
103 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTCCAGGCTACTACGTGTCTCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:23761263 original size:26 final size:26
Alignment explanation
Indices: 23761184--23761264 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
23761174 TTCGATCACG
23761184 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
23761210 CGTGT-GT-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
23761235 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
23761261 TGTG
1 TGTG
23761265 AACCGATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:23761322 original size:26 final size:26
Alignment explanation
Indices: 23761288--23761337 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23761278 GAATATAAAG
23761288 GGGGTTGCTAAGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
*
23761314 GGGGTTGCTAAGTGTTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
23761338 GATTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:23761353 original size:33 final size:34
Alignment explanation
Indices: 23761316--23761450 Score: 123
Period size: 33 Copynumber: 3.8 Consensus size: 34
23761306 TTCCCCAAGG
*
23761316 GGTTGCTAAGTGTTGATTCC-CCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCACCGATTCATTGGT
23761349 GGTTGCTAAGTGCTGATTCCACCG-TATCATTGAATGT
1 GGTTGCTAAGTGCTGATTCCACCGAT-TCATTG---GT
* *
23761386 GAAAGGGGTTGCTAAGTGCTGATTCC-CCGAATCACTGGT
1 ------GGTTGCTAAGTGCTGATTCCACCGATTCATTGGT
*
23761425 GGTTGCTAAGTGCTGAATCCACCGAT
1 GGTTGCTAAGTGCTGATTCCACCGAT
23761451 AACAGATAAC
Statistics
Matches: 84, Mismatches: 5, Indels: 25
0.74 0.04 0.22
Matches are distributed among these distances:
33 39 0.46
34 13 0.15
37 2 0.02
39 2 0.02
42 8 0.10
43 20 0.24
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (34 bp):
GGTTGCTAAGTGCTGATTCCACCGATTCATTGGT
Found at i:23763746 original size:8 final size:8
Alignment explanation
Indices: 23763733--23763757 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23763723 TTTTAAATAA
23763733 TATTTTAT
1 TATTTTAT
23763741 TATTTTAT
1 TATTTTAT
23763749 TATTTTAT
1 TATTTTAT
23763757 T
1 T
23763758 GTTTAGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:23768702 original size:31 final size:31
Alignment explanation
Indices: 23768664--23768727 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
23768654 GACCAAGCAA
23768664 GATAGTTACTCCTATCAAGCTTTACGAGACT
1 GATAGTTACTCCTATCAAGCTTTACGAGACT
23768695 GATAGTTACTCCTATCAAGCTTTACGAGACT
1 GATAGTTACTCCTATCAAGCTTTACGAGACT
23768726 GA
1 GA
23768728 CTTGCAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (31 bp):
GATAGTTACTCCTATCAAGCTTTACGAGACT
Found at i:23770354 original size:22 final size:22
Alignment explanation
Indices: 23770261--23770347 Score: 120
Period size: 22 Copynumber: 4.0 Consensus size: 22
23770251 GTATGGGTTT
* * *
23770261 AGCACTTTTGTGCTTTTTGTTC
1 AGCACTTTGGTGCTCTCTGTTC
*
23770283 AGCACTTTGGTGCTCTCTATTC
1 AGCACTTTGGTGCTCTCTGTTC
*
23770305 AGCACTTTGGTGCTCTCTGATC
1 AGCACTTTGGTGCTCTCTGTTC
*
23770327 ATCACTTTGGTGCTCTCTGTT
1 AGCACTTTGGTGCTCTCTGTT
23770348 TTGCACTATG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 57 1.00
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (22 bp):
AGCACTTTGGTGCTCTCTGTTC
Found at i:23770354 original size:44 final size:44
Alignment explanation
Indices: 23770257--23770354 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
23770247 GCTTGTATGG
* * * *
23770257 GTTTAGCACTTTTGTGCTTTTTGTTCAGCACTTTGGTGCTCTCT
1 GTTTAGCACTTTGGTGCTCTCTGATCAGCACTTTGGTGCTCTCT
* * *
23770301 ATTCAGCACTTTGGTGCTCTCTGATCATCACTTTGGTGCTCTCT
1 GTTTAGCACTTTGGTGCTCTCTGATCAGCACTTTGGTGCTCTCT
*
23770345 GTTTTGCACT
1 GTTTAGCACT
23770355 ATGGCACTCT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.11, C:0.23, G:0.19, T:0.46
Consensus pattern (44 bp):
GTTTAGCACTTTGGTGCTCTCTGATCAGCACTTTGGTGCTCTCT
Found at i:23774187 original size:33 final size:31
Alignment explanation
Indices: 23774147--23774207 Score: 95
Period size: 33 Copynumber: 1.9 Consensus size: 31
23774137 AAATTTAAAT
*
23774147 TTAAATTAAATTCATAATAAAAAACTAACAAAA
1 TTAAATTAAATTAAT-A-AAAAAACTAACAAAA
23774180 TTAAATTAAATTAATAAAAAAACTAACA
1 TTAAATTAAATTAATAAAAAAACTAACA
23774208 TTTAAAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 12 0.44
32 1 0.04
33 14 0.52
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (31 bp):
TTAAATTAAATTAATAAAAAAACTAACAAAA
Found at i:23775661 original size:17 final size:17
Alignment explanation
Indices: 23775639--23775691 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
23775629 TTTATTTGGG
23775639 TTTTATTTTATAAATTA
1 TTTTATTTTATAAATTA
*
23775656 TTTTA-TTTATGAATTA
1 TTTTATTTTATAAATTA
*
23775672 TTTTCATTTTA-AAAATA
1 TTTT-ATTTTATAAATTA
23775689 TTT
1 TTT
23775692 GAATTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 14 0.45
17 13 0.42
18 4 0.13
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TTTTATTTTATAAATTA
Found at i:23776014 original size:58 final size:60
Alignment explanation
Indices: 23775896--23776020 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 60
23775886 CATAATGTAA
23775896 TACCTTAGTTTCACTTAACATTTTTTTCTGCCAGTCAATTAAACTATTTTAGTACTGATATTAT
1 TACCTTAGTTTCACTTAACA----TTTCTGCCAGTCAATTAAACTATTTTAGTACTGATATTAT
23775960 TACCTTAGTTTCACTTAACA-TT-TGCCAGTCAATTAAACTATTTTAGTACTGATATTAT
1 TACCTTAGTTTCACTTAACATTTCTGCCAGTCAATTAAACTATTTTAGTACTGATATTAT
23776018 TAC
1 TAC
23776021 AAATATTTTA
Statistics
Matches: 61, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
58 39 0.64
59 2 0.03
64 20 0.33
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.45
Consensus pattern (60 bp):
TACCTTAGTTTCACTTAACATTTCTGCCAGTCAATTAAACTATTTTAGTACTGATATTAT
Done.