Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67973905
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 80 of 228
Found at i:23782842 original size:51 final size:51
Alignment explanation
Indices: 23782713--23782943 Score: 254
Period size: 51 Copynumber: 4.5 Consensus size: 51
23782703 GATAGTCATG
* * * * * * * *
23782713 TGTGTAGTACTATGTGCAGGCTACTACGTGTAGCAGA-ATG-ATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATA-GCTTCGATCACA
* *
23782763 TTTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGCTTCGATCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACA
* * * *
23782814 TTTGTAGTACTATGTGCATGCTATTATGCGTACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACA
* * *
23782865 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAG-TGAT-GATCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT--TCGATCACA
23782916 TGTGTAGTACTATGTGCAGGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
23782944 TGAACCGGTA
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
50 35 0.22
51 121 0.77
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACA
Found at i:23785574 original size:34 final size:33
Alignment explanation
Indices: 23785535--23785608 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 33
23785525 TCTAATTTTC
*
23785535 TTTTTTACATAATTAAATATTTCTTATTTTGAAT
1 TTTTTTACATAATTAAATATTT-TTATTTTAAAT
*
23785569 TTTTTTACTTAATTAAATATTTTTATTTTAAAT
1 TTTTTTACATAATTAAATATTTTTATTTTAAAT
*
23785602 ATTTTTA
1 TTTTTTA
23785609 TTTACCTTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 16 0.43
34 21 0.57
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (33 bp):
TTTTTTACATAATTAAATATTTTTATTTTAAAT
Found at i:23785612 original size:14 final size:15
Alignment explanation
Indices: 23785547--23785611 Score: 76
Period size: 15 Copynumber: 4.1 Consensus size: 15
23785537 TTTTACATAA
23785547 TTAAATATTTCTTATT
1 TTAAATATTT-TTATT
* *
23785563 TTGAATTTTTTTACTT
1 TTAAATATTTTTA-TT
23785579 AATTAAATATTTTTATT
1 --TTAAATATTTTTATT
23785596 TTAAATATTTTTATT
1 TTAAATATTTTTATT
23785611 T
1 T
23785612 ACCTTGTCGA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
15 19 0.45
16 10 0.24
17 2 0.05
18 11 0.26
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (15 bp):
TTAAATATTTTTATT
Found at i:23786271 original size:12 final size:12
Alignment explanation
Indices: 23786250--23786294 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
23786240 TCCAATTAAC
*
23786250 ATAGATGTAGAT
1 ATAGAAGTAGAT
23786262 ATAGAAGTAGAT
1 ATAGAAGTAGAT
* *
23786274 GTAGTAGTAGAT
1 ATAGAAGTAGAT
*
23786286 GTAGAAGTA
1 ATAGAAGTA
23786295 AAATTAGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (12 bp):
ATAGAAGTAGAT
Found at i:23786274 original size:18 final size:18
Alignment explanation
Indices: 23786251--23786290 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
23786241 CCAATTAACA
23786251 TAGATGTAGATA-TAGAAG
1 TAGATGTAG-TAGTAGAAG
*
23786269 TAGATGTAGTAGTAGATG
1 TAGATGTAGTAGTAGAAG
23786287 TAGA
1 TAGA
23786291 AGTAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (18 bp):
TAGATGTAGTAGTAGAAG
Found at i:23787013 original size:24 final size:24
Alignment explanation
Indices: 23786986--23787035 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
23786976 TCCAAAGTAG
23786986 TTCTAACATAAAAATAACATGAAA
1 TTCTAACATAAAAATAACATGAAA
23787010 TTCTAACATAAAAATAACATGAAA
1 TTCTAACATAAAAATAACATGAAA
23787034 TT
1 TT
23787036 ATTATAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (24 bp):
TTCTAACATAAAAATAACATGAAA
Found at i:23794082 original size:3 final size:3
Alignment explanation
Indices: 23794074--23794106 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
23794064 AGTTAGTAAG
23794074 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
23794107 AAGGCTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23799652 original size:26 final size:26
Alignment explanation
Indices: 23799623--23799687 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
23799613 TTTACCCACA
*
23799623 GTAAAATTTTGATGATTTTA-CCATCG
1 GTAAAATTTTGACGATTTTATCCAT-G
* *
23799649 GTAAATTTTTTGACGATTTTATGCATG
1 GTAAA-ATTTTGACGATTTTATCCATG
23799676 GTAAAATTTTGA
1 GTAAAATTTTGA
23799688 GAAAATATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 11 0.33
27 19 0.58
28 3 0.09
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.45
Consensus pattern (26 bp):
GTAAAATTTTGACGATTTTATCCATG
Found at i:23801223 original size:27 final size:27
Alignment explanation
Indices: 23801193--23801444 Score: 351
Period size: 27 Copynumber: 9.3 Consensus size: 27
23801183 TACCCTTGAT
*
23801193 GGGTAAAATGACCGTAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* * *
23801220 GGGTAAAATGACCGTAACGCCCTTATA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* *
23801247 GGGTAAAATGACCGTAATGCTCCTATA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* **
23801274 GAGTAAAATGAAAGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
*
23801301 GGGTAAAATGACTGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* *
23801328 GGGTAAAATAATCGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
*
23801355 GGGTAAAATGACCGTAATGCCCATGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* **
23801382 GGGTAAAATAATTGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
23801409 GGGTAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
*
23801436 AGGTAAAAT
1 GGGTAAAAT
23801445 AACTATTTTG
Statistics
Matches: 198, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 198 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATGCCCCTGTA
Found at i:23801501 original size:24 final size:24
Alignment explanation
Indices: 23801474--23801551 Score: 88
Period size: 24 Copynumber: 3.2 Consensus size: 24
23801464 TTTAAATCAT
23801474 TGATTTGCCTATGATGTAAATGAA
1 TGATTTGCCTATGATGTAAATGAA
* *
23801498 TGATTTGTCCCA-GATGTAAATGAC
1 TGATTTG-CCTATGATGTAAATGAA
* *
23801522 TGATTTGCCTGTGATTTAAAT-AA
1 TGATTTGCCTATGATGTAAATGAA
23801545 CTGATTT
1 -TGATTT
23801552 ATCTGTAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 3 0.07
24 39 0.87
25 3 0.07
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (24 bp):
TGATTTGCCTATGATGTAAATGAA
Found at i:23801571 original size:24 final size:24
Alignment explanation
Indices: 23801514--23801574 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
23801504 GTCCCAGATG
* *
23801514 TAAATGACTGATTTGCCTGTGATT
1 TAAATGACTGATTTACCTGTAATT
* *
23801538 TAAATAACTGATTTATCTGTAATT
1 TAAATGACTGATTTACCTGTAATT
**
23801562 TGTATGACTGATT
1 TAAATGACTGATT
23801575 CTGTGCATGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (24 bp):
TAAATGACTGATTTACCTGTAATT
Found at i:23801812 original size:32 final size:32
Alignment explanation
Indices: 23801746--23801867 Score: 127
Period size: 32 Copynumber: 3.8 Consensus size: 32
23801736 ACAGCGATGC
* * * *
23801746 TACTAATGGCTTTGTATCGATCATAGTATTGT
1 TACTAATGGCTGTGTACCGATCATATTACTGT
* *
23801778 TACTAATGGCTTTGTACCGATCATATTACCGT
1 TACTAATGGCTGTGTACCGATCATATTACTGT
** * * * *
23801810 TACCGATGGCTGTGTGCCGGTTATTTTACTGT
1 TACTAATGGCTGTGTACCGATCATATTACTGT
*
23801842 TACTAATGGCTGTGTACTGATCATAT
1 TACTAATGGCTGTGTACCGATCATAT
23801868 CACTACTACT
Statistics
Matches: 71, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.40
Consensus pattern (32 bp):
TACTAATGGCTGTGTACCGATCATATTACTGT
Found at i:23805960 original size:39 final size:39
Alignment explanation
Indices: 23805901--23805995 Score: 102
Period size: 39 Copynumber: 2.5 Consensus size: 39
23805891 TTAGTATTAT
** * *
23805901 GATATATGCTTGAACGTTATGCGATTATATGAGTATTGC
1 GATATATGCTTGAAAATTATGCAATTATATGAGTAATGC
* * ** *
23805940 GATATGTGCTTGAAAATTATGTAATTATATTTGTAATGT
1 GATATATGCTTGAAAATTATGCAATTATATGAGTAATGC
23805979 GATATATGCTT-AAAATT
1 GATATATGCTTGAAAATT
23805996 TAATATGTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
38 6 0.13
39 40 0.87
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (39 bp):
GATATATGCTTGAAAATTATGCAATTATATGAGTAATGC
Found at i:23808772 original size:58 final size:57
Alignment explanation
Indices: 23808699--23808807 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
23808689 AATGGAAATG
* *
23808699 GTGAATATGGAGAAATGAGAAACATTTGGAAATGATTATGGTTTTCTCTAAATTGGAA
1 GTGAAAATGGAGAAATG-GAAACATTTGGAAATGAATATGGTTTTCTCTAAATTGGAA
* * * *
23808757 GTGAAAATTGAGAAATGGGATCATTTGGAAATGAATGTGGTTTTCTCTAAA
1 GTGAAAATGGAGAAATGGAAACATTTGGAAATGAATATGGTTTTCTCTAAA
23808808 ATGAAAATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 30 0.67
58 15 0.33
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.33
Consensus pattern (57 bp):
GTGAAAATGGAGAAATGGAAACATTTGGAAATGAATATGGTTTTCTCTAAATTGGAA
Found at i:23810112 original size:17 final size:17
Alignment explanation
Indices: 23810067--23810112 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
23810057 TCTCAGATTT
23810067 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
* **
23810084 TAATACATATATCTTTC
1 TGATACCCATATCTTTC
23810101 TGATACCCATAT
1 TGATACCCATAT
23810113 ATTTGACTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.41
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:23814629 original size:17 final size:17
Alignment explanation
Indices: 23814607--23814639 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23814597 TCTCAGATTT
23814607 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
23814624 TGATACCCATATCTTT
1 TGATACCCATATCTTT
23814640 GACTTTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:23818628 original size:27 final size:27
Alignment explanation
Indices: 23818597--23818650 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
23818587 TTTGCACGAG
23818597 TAATCTTCTTTACTTTTAGATCGTGCT
1 TAATCTTCTTTACTTTTAGATCGTGCT
23818624 TAATCTTCTTTACTTTTAGATCGTGCT
1 TAATCTTCTTTACTTTTAGATCGTGCT
23818651 CAAATGGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.52
Consensus pattern (27 bp):
TAATCTTCTTTACTTTTAGATCGTGCT
Found at i:23833543 original size:12 final size:12
Alignment explanation
Indices: 23833521--23833549 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23833511 TTATTAATGG
23833521 TGAAT-AATATT
1 TGAATGAATATT
23833532 TGAATGAATATT
1 TGAATGAATATT
23833544 TGAATG
1 TGAATG
23833550 TGCTAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (12 bp):
TGAATGAATATT
Found at i:23847544 original size:30 final size:30
Alignment explanation
Indices: 23847508--23847564 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
23847498 ATGAATGGAA
23847508 CAAGATTTTTAAATAAAAAAGTAAAATTTT
1 CAAGATTTTTAAATAAAAAAGTAAAATTTT
23847538 CAAGATTTTTAAATAAAAAAGTAAAAT
1 CAAGATTTTTAAATAAAAAAGTAAAAT
23847565 GACTCAGTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (30 bp):
CAAGATTTTTAAATAAAAAAGTAAAATTTT
Found at i:23860558 original size:20 final size:20
Alignment explanation
Indices: 23860533--23860605 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
23860523 TTGTATTAGC
23860533 TACCATTTACACATACATAA
1 TACCATTTACACATACATAA
23860553 TACCATTTACACATTTACACATACATAA
1 TACCATTT----A----CACATACATAA
23860581 TACCATTTACACATACATAA
1 TACCATTTACACATACATAA
23860601 TACCA
1 TACCA
23860606 AAACATAATC
Statistics
Matches: 45, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
20 24 0.53
24 2 0.04
28 19 0.42
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (20 bp):
TACCATTTACACATACATAA
Found at i:23860567 original size:28 final size:28
Alignment explanation
Indices: 23860536--23860594 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
23860526 TATTAGCTAC
23860536 CATTTACACATACATAATACCATTTACA
1 CATTTACACATACATAATACCATTTACA
23860564 CATTTACACATACATAATACCATTTACA
1 CATTTACACATACATAATACCATTTACA
23860592 CAT
1 CAT
23860595 ACATAATACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.32
Consensus pattern (28 bp):
CATTTACACATACATAATACCATTTACA
Found at i:23867500 original size:23 final size:23
Alignment explanation
Indices: 23867474--23867546 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
23867464 ATAAGTGCAA
23867474 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
23867497 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
23867520 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
23867543 CACT
1 CACT
23867547 AATCAATAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:23882183 original size:44 final size:44
Alignment explanation
Indices: 23882115--23882481 Score: 195
Period size: 44 Copynumber: 7.9 Consensus size: 44
23882105 TAGATCGCAT
23882115 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAG
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAG
* * * **
23882159 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAG
** *** * * *
23882203 TGGATT-AAAATA-AAGGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCG
1 CAGATTGAAGCCAGAA--ATCTTATCTCCCTG-AG--AT--TACAGCAGA--G
23882254 CATTAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGC-GTAG
1 C---AGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAG-AG
* * * * * **
23882301 CTGATTAAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAG
* *** * * *
23882345 CGGATT-AAAATAAAAGATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 CAGATTGAAGCCAGAA-ATCTTATCTCCCTGAGA-TTACAG--CAG-AG
* *
23882392 ATCACATCAGATTGAAGCCAGAAATCTTACCTCCCTGAGATTACAGCGGAG
1 -------CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAG
* *
23882443 CAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAG
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAG
23882482 TGGAGCGGAT
Statistics
Matches: 244, Mismatches: 49, Indels: 60
0.69 0.14 0.17
Matches are distributed among these distances:
42 1 0.00
43 10 0.04
44 150 0.61
45 3 0.01
46 1 0.00
47 6 0.02
48 1 0.00
49 12 0.05
51 5 0.02
52 1 0.00
53 2 0.01
54 41 0.17
55 9 0.04
56 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAG
Found at i:23882284 original size:142 final size:141
Alignment explanation
Indices: 23882032--23882543 Score: 843
Period size: 142 Copynumber: 3.6 Consensus size: 141
23882022 TCTACGAAAT
*
23882032 TAGTAATCCCATCTCCCTGAGATTACAGTGGAGCGGATT---A-AAAGGATCTTATCTCTCTGAA
1 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAA
23882093 GTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGA
66 GTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGC-GA
23882158 GCAGATTGAAGC
130 GCAGATTGAAGC
*
23882170 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAA
1 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAA
* *
23882235 GTTATAGTAGAGTAGATCGCATTAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGTA
66 GTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCG-A
* *
23882300 GCTGATTAAAGC
130 GCAGATTGAAGC
*
23882312 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAA
1 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAA
* *
23882377 GTTACAGTAGAGTAGATCACATCAGATTGAAGCCAGAAATCTTACCTCCCTGAGATTACAGCGGA
66 GTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGC-GA
23882442 GCAGATTGAAGC
130 GCAGATTGAAGC
* * *
23882454 CAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTTTCTGAA
1 TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAA
* *
23882519 GTTACAGTTGAGTAGATCACATCAG
66 GTTACAGTAGAGTAGATCGCATCAG
23882544 GTCTTATCTT
Statistics
Matches: 349, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
138 37 0.11
141 2 0.01
142 309 0.89
143 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (141 bp):
TAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAA
GTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGAG
CAGATTGAAGC
Found at i:23882487 original size:44 final size:44
Alignment explanation
Indices: 23882399--23882492 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
23882389 TAGATCACAT
*
23882399 CAGATTGAAGCCAGAAATCTTACCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCCAGAAATCCTACCTCCCTGAGATTACAGCGGAG
* * *
23882443 CAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCCAGAAATCCTACCTCCCTGAGATTACAGCGGAG
*
23882487 CGGATT
1 CAGATT
23882493 AAAGTAAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCCTACCTCCCTGAGATTACAGCGGAG
Found at i:23882511 original size:44 final size:43
Alignment explanation
Indices: 23882415--23882570 Score: 129
Period size: 44 Copynumber: 3.6 Consensus size: 43
23882405 GAAGCCAGAA
* * * * *
23882415 ATCTTACCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGTCAG-G
* * *
23882459 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGT-CAGG
** * * * *
23882503 ATCTTATCTTTCTGA-AGTTACAGTTGAGTAGATCACA-TCAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAGTCAGG
*
23882545 -TCTTATCTTCCTGAGATTACAGTGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
23882571 ATAGACCGAA
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
41 22 0.24
42 4 0.04
43 2 0.02
44 60 0.67
45 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (43 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAGTCAGG
Found at i:23884919 original size:17 final size:18
Alignment explanation
Indices: 23884886--23884919 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23884876 ATATGTATAT
*
23884886 ATTATAAAAAACTATGCG
1 ATTAAAAAAAACTATGCG
23884904 ATTAAAAAAAAC-ATGC
1 ATTAAAAAAAACTATGC
23884920 ATATATGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.56, C:0.12, G:0.09, T:0.24
Consensus pattern (18 bp):
ATTAAAAAAAACTATGCG
Found at i:23891870 original size:17 final size:16
Alignment explanation
Indices: 23891850--23891881 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
23891840 CTGTTTTCAT
23891850 TTTCTTTTACTTTTATG
1 TTTCTTTT-CTTTTATG
23891867 TTTCTTTTCTTTTAT
1 TTTCTTTTCTTTTAT
23891882 TCATTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.09, C:0.12, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTCTTTTCTTTTATG
Found at i:23893761 original size:6 final size:6
Alignment explanation
Indices: 23893752--23893777 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
23893742 CACTCACAGA
23893752 AGCATC AGCATC AGCATC AGCATC AG
1 AGCATC AGCATC AGCATC AGCATC AG
23893778 TTTTCACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.31, G:0.19, T:0.15
Consensus pattern (6 bp):
AGCATC
Found at i:23903315 original size:15 final size:15
Alignment explanation
Indices: 23903287--23903333 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
23903277 TTTATATTAT
*
23903287 TATA-ATTGTGTGTA
1 TATATATTGTATGTA
23903301 TATATATTGTATGTA
1 TATATATTGTATGTA
* *
23903316 TATATATTATATGCA
1 TATATATTGTATGTA
23903331 TAT
1 TAT
23903334 CAATGATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 4 0.14
15 25 0.86
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.51
Consensus pattern (15 bp):
TATATATTGTATGTA
Found at i:23906796 original size:22 final size:22
Alignment explanation
Indices: 23906769--23906811 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
23906759 TATTTCAGTT
* *
23906769 TACAGATATTAAGTTTATTTTC
1 TACAGAAATAAAGTTTATTTTC
*
23906791 TACAGAAATAAAGTTTTTTTT
1 TACAGAAATAAAGTTTATTTT
23906812 TGTTTATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (22 bp):
TACAGAAATAAAGTTTATTTTC
Found at i:23909786 original size:13 final size:13
Alignment explanation
Indices: 23909768--23909815 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
23909758 TTCTACCATA
23909768 TTGGACCACCCCC
1 TTGGACCACCCCC
* *
23909781 TTGGACCACTCCA
1 TTGGACCACCCCC
23909794 TTGGACC-CCTCCC
1 TTGGACCACC-CCC
*
23909807 TTGAACCAC
1 TTGGACCAC
23909816 TCTCTTGGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 1 0.04
13 26 0.93
14 1 0.04
ACGTcount: A:0.19, C:0.46, G:0.15, T:0.21
Consensus pattern (13 bp):
TTGGACCACCCCC
Found at i:23909824 original size:26 final size:26
Alignment explanation
Indices: 23909767--23909817 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23909757 ATTCTACCAT
*
23909767 ATTGGACCACCCCCTTGGACCACTCC
1 ATTGGACCACCCCCTTGAACCACTCC
23909793 ATTGGACC-CCTCCCTTGAACCACTC
1 ATTGGACCACC-CCCTTGAACCACTC
23909818 TCTTGGAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.20, C:0.45, G:0.14, T:0.22
Consensus pattern (26 bp):
ATTGGACCACCCCCTTGAACCACTCC
Found at i:23911694 original size:33 final size:33
Alignment explanation
Indices: 23911652--23911723 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
23911642 GAGCACTTTT
23911652 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
1 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
23911685 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
1 TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
*
23911718 CCAAAA
1 TCAAAA
23911724 TTCCCAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (33 bp):
TCAAAAATTGATTTGACAGTGAAAATGCCTTAG
Found at i:23916275 original size:16 final size:16
Alignment explanation
Indices: 23916251--23916284 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23916241 AATTGTGTAA
*
23916251 GTATGTACGTAAACTC
1 GTATCTACGTAAACTC
23916267 GTATCTACGTAAACTC
1 GTATCTACGTAAACTC
23916283 GT
1 GT
23916285 TGAGTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (16 bp):
GTATCTACGTAAACTC
Found at i:23916455 original size:226 final size:226
Alignment explanation
Indices: 23916061--23916480 Score: 768
Period size: 226 Copynumber: 1.9 Consensus size: 226
23916051 TAGGGGAAAT
*
23916061 AGTAATTTTTCCAAAAATGTTTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
1 AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
* *
23916126 TCATTCGTATAGATCCGGTTAGACCTCGTACAGAGTTAGATCGGGGAAAAGGAAAAATATCGGAT
66 TCATTCGTATAGATCCGGTTAGACCTCATACAGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
*
23916191 TAGTCGCCTTCGTATCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTATG
131 TAGTCGCCTTCGTACCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTATG
23916256 TACGTAAACTCGTATCTACGTAAACTCGTTG
196 TACGTAAACTCGTATCTACGTAAACTCGTTG
* *
23916287 AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATTAATTATGTTGAATTGAGTTAAAT
1 AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
*
23916352 TCATTCGTATAGATCCGGTTAGACCTCATACGGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
66 TCATTCGTATAGATCCGGTTAGACCTCATACAGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
*
23916417 TAGTCGCCTTCGTACCTACGTACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTAT
131 TAGTCGCCTTCGTACCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTAT
23916481 ATGATTTGTT
Statistics
Matches: 186, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
226 186 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (226 bp):
AGTAATTTTTCCAAAAATGTGTGTTGGACTAAATTGAATATGAATTATGTTAAATTGAGTTAAAT
TCATTCGTATAGATCCGGTTAGACCTCATACAGAGTTAGATCGGGGAAAAGGAAAAATATCAGAT
TAGTCGCCTTCGTACCTACATACACTCGTTGAGGTAAGTTTGTGTAATTAAATTGTGTAAGTATG
TACGTAAACTCGTATCTACGTAAACTCGTTG
Found at i:23917038 original size:17 final size:17
Alignment explanation
Indices: 23917016--23917049 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23917006 TTATTGATTC
*
23917016 GGAAGCTCGTTCGAGTT
1 GGAAGCTCGTTAGAGTT
*
23917033 GGAAGCTTGTTAGAGTT
1 GGAAGCTCGTTAGAGTT
23917050 ATATCACACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.32
Consensus pattern (17 bp):
GGAAGCTCGTTAGAGTT
Found at i:23921587 original size:10 final size:11
Alignment explanation
Indices: 23921572--23921617 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
23921562 AACTAAATCC
23921572 TTTCTCTC-AA
1 TTTCTCTCAAA
*
23921582 TTTCTCTCTAA
1 TTTCTCTCAAA
23921593 TATTCTCTCAAA
1 T-TTCTCTCAAA
*
23921605 TTCCTCTCAAA
1 TTTCTCTCAAA
23921616 TT
1 TT
23921618 CCTATTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
10 8 0.25
11 14 0.44
12 10 0.31
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (11 bp):
TTTCTCTCAAA
Found at i:23921598 original size:12 final size:10
Alignment explanation
Indices: 23921572--23921614 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
23921562 AACTAAATCC
23921572 TTTCTCTCAA
1 TTTCTCTCAA
23921582 TTTCTCTCTAA
1 TTTCTCTC-AA
23921593 TATTCTCTCAAA
1 T-TTCTCTC-AA
*
23921605 TTCCTCTCAA
1 TTTCTCTCAA
23921615 ATTCCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 10 0.34
11 9 0.31
12 10 0.34
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (10 bp):
TTTCTCTCAA
Found at i:23923846 original size:49 final size:49
Alignment explanation
Indices: 23923791--23923911 Score: 224
Period size: 49 Copynumber: 2.5 Consensus size: 49
23923781 GTTTATATTA
*
23923791 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
23923840 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
1 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
*
23923889 ATTTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
23923912 AATATTCTTA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTC
Found at i:23925225 original size:18 final size:17
Alignment explanation
Indices: 23925193--23925237 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
23925183 AAGTATATAA
23925193 AAATTATTTAAAAATAT
1 AAATTATTTAAAAATAT
*
23925210 AAATTTTTTAAAAA-AT
1 AAATTATTTAAAAATAT
*
23925226 -AATTATTGAAAA
1 AAATTATTTAAAA
23925238 GTATCATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.40
16 2 0.08
17 13 0.52
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATTATTTAAAAATAT
Found at i:23932761 original size:29 final size:29
Alignment explanation
Indices: 23932719--23932816 Score: 124
Period size: 29 Copynumber: 3.2 Consensus size: 29
23932709 GTGAACCATG
* *
23932719 ATATGTGAACCCTAGAATTATGCGAGCCT
1 ATATGTGGACCCTAGAATTAGGCGAGCCT
* *
23932748 ATATGTGGACCCTAGGATTAGGTGAGCCT
1 ATATGTGGACCCTAGAATTAGGCGAGCCT
23932777 ATATGTATGTGACCCCTAGAATTAGGCGAGCCT
1 ATATG--TG-GA-CCCTAGAATTAGGCGAGCCT
23932810 ATATGTG
1 ATATGTG
23932817 AAACCTAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
29 30 0.51
31 4 0.07
32 2 0.03
33 23 0.39
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (29 bp):
ATATGTGGACCCTAGAATTAGGCGAGCCT
Found at i:23932794 original size:33 final size:32
Alignment explanation
Indices: 23932720--23932815 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 32
23932710 TGAACCATGA
*
23932720 TATGTGAACCCTAGAATTATGCGAGCCTATATG
1 TATGTG-ACCCTAGAATTAGGCGAGCCTATATG
* *
23932753 --TG-GACCCTAGGATTAGGTGAGCCTATATG
1 TATGTGACCCTAGAATTAGGCGAGCCTATATG
23932782 TATGTGACCCCTAGAATTAGGCGAGCCTATATG
1 TATGTGA-CCCTAGAATTAGGCGAGCCTATATG
23932815 T
1 T
23932816 GAAACCTAGG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
29 23 0.43
30 1 0.02
31 4 0.07
32 2 0.04
33 24 0.44
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (32 bp):
TATGTGACCCTAGAATTAGGCGAGCCTATATG
Found at i:23932838 original size:62 final size:62
Alignment explanation
Indices: 23932720--23932839 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
23932710 TGAACCATGA
* * * ** **
23932720 TATGTGAACCCTAGAATTATGCGAGCCTATATGTGGACCCTAGGATTAGGTGAGCCTATATG
1 TATGTGAACCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACAGGCAAGCCTATATG
* *
23932782 TATGTGACCCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACATGCAAGCCTA
1 TATGTGAACCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACAGGCAAGCCTA
23932840 CATGCGAACC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (62 bp):
TATGTGAACCCTAGAATTAGGCGAGCCTATATGTGAAACCTAGGAACAGGCAAGCCTATATG
Found at i:23932852 original size:29 final size:29
Alignment explanation
Indices: 23932805--23932931 Score: 105
Period size: 29 Copynumber: 4.4 Consensus size: 29
23932795 GAATTAGGCG
* *
23932805 AGCCTATATGTGAAACCTAGGAACATGCA
1 AGCCTATATGCGAACCCTAGGAACATGCA
* * *
23932834 AGCCTACATGCGAACCCTAAGAAAATATG-A
1 AGCCTATATGCGAACCCT-AG-GAACATGCA
* * * **
23932864 A-TCTATGTGCGAACCCTAGGAACTTGTG
1 AGCCTATATGCGAACCCTAGGAACATGCA
* **
23932892 AGCCTATATGCGATCCCTAGGTTCATGCA
1 AGCCTATATGCGAACCCTAGGAACATGCA
23932921 AGCCTATATGC
1 AGCCTATATGC
23932932 CATGCAAACC
Statistics
Matches: 74, Mismatches: 20, Indels: 8
0.73 0.20 0.08
Matches are distributed among these distances:
27 4 0.05
28 3 0.04
29 58 0.78
30 4 0.05
31 5 0.07
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (29 bp):
AGCCTATATGCGAACCCTAGGAACATGCA
Found at i:23951132 original size:22 final size:22
Alignment explanation
Indices: 23951104--23951154 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
23951094 TTCTCTTAAA
*
23951104 CTCTCAATTTCCTTCC-AAAAT
1 CTCTCAATTTCATTCCAAAAAT
23951125 CCTCTCAATTTCATTCCAAAAAT
1 -CTCTCAATTTCATTCCAAAAAT
23951148 CTCTCAA
1 CTCTCAA
23951155 ATCCATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.35
Consensus pattern (22 bp):
CTCTCAATTTCATTCCAAAAAT
Found at i:23951223 original size:10 final size:10
Alignment explanation
Indices: 23951206--23951253 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
23951196 AAACAATTTC
23951206 AAATTTTTTT
1 AAATTTTTTT
*
23951216 ATATTTTTTT
1 AAATTTTTTT
**
23951226 AAAATAATTTT
1 -AAATTTTTTT
23951237 AAATTTTTTT
1 AAATTTTTTT
*
23951247 ATATTTT
1 AAATTTT
23951254 CATCAATGGC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
10 23 0.77
11 7 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
AAATTTTTTT
Found at i:23951235 original size:31 final size:30
Alignment explanation
Indices: 23951188--23951253 Score: 105
Period size: 31 Copynumber: 2.2 Consensus size: 30
23951178 CCTCAATTTC
23951188 ATTTTTTTAAACAATTTCAAATTTTTTTAT
1 ATTTTTTTAAACAATTTCAAATTTTTTTAT
* *
23951218 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTT-AAACAATTTCAAATTTTTTTAT
23951249 ATTTT
1 ATTTT
23951254 CATCAATGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (30 bp):
ATTTTTTTAAACAATTTCAAATTTTTTTAT
Found at i:23952342 original size:7 final size:7
Alignment explanation
Indices: 23952332--23952356 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23952322 ATAGTATTTA
23952332 GTATTAT
1 GTATTAT
23952339 GTATTAT
1 GTATTAT
23952346 GTATTAT
1 GTATTAT
23952353 GTAT
1 GTAT
23952357 ATAACTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:23952342 original size:14 final size:15
Alignment explanation
Indices: 23952325--23952356 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
23952315 CCGGTATATA
23952325 GTATTTA-GTATTAT
1 GTATTTATGTATTAT
23952339 GTA-TTATGTATTAT
1 GTATTTATGTATTAT
23952353 GTAT
1 GTAT
23952357 ATAACTGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.19
14 13 0.81
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (15 bp):
GTATTTATGTATTAT
Found at i:23953567 original size:26 final size:25
Alignment explanation
Indices: 23953511--23953568 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
23953501 TATTTTGATA
23953511 TTATTTGATATAATAAAATAGAAAT
1 TTATTTGATATAATAAAATAGAAAT
* * *
23953536 TCTATTTGATGTAATAAAAATCGTAAT
1 T-TATTTGATATAAT-AAAATAGAAAT
23953563 TTATTT
1 TTATTT
23953569 CATACCCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 17 0.61
27 10 0.36
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (25 bp):
TTATTTGATATAATAAAATAGAAAT
Found at i:23953607 original size:29 final size:29
Alignment explanation
Indices: 23953572--23954486 Score: 1428
Period size: 29 Copynumber: 32.4 Consensus size: 29
23953562 TTTATTTCAT
* *
23953572 ACCCTAACCCTAACTTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23953601 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23953630 ACCCTAACTTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23953659 ACCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23953688 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23953716 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23953745 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
* *
23953774 ACCATAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23953802 ACCCTAACCTTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23953830 ACCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
* *
23953859 ACCCTAACCCTAATCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
* *
23953888 CCCCTAACATTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
* *
23953917 CCCCAAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23953946 ACCCTAACCCTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23953974 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954003 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
* * *
23954032 ATCCTAACCCTACCCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954061 ACCCTAACCTTAACCTAATTTATTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954090 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954119 ACCCTAACCTTAACCTAATTTAATT-AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954147 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954176 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954205 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954234 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954263 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954292 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954321 A-CCTAACCTTAACCTAATTTATTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954349 A--C---CC-TAACCTAATTTATTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954372 ACCCTAACCCTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954401 ACCCTAACCTTAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954430 A--C---CC-TAACCTAATTTAATTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
*
23954453 ACCCTAA-C-T----TAATTTATTTAAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAA
23954476 ACCCTAACCTT
1 ACCCTAACCTT
23954487 TTATGTCGAA
Statistics
Matches: 828, Mismatches: 41, Indels: 38
0.91 0.05 0.04
Matches are distributed among these distances:
23 60 0.07
24 5 0.01
25 3 0.00
27 4 0.00
28 164 0.20
29 592 0.71
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (29 bp):
ACCCTAACCTTAACCTAATTTAATTAAAA
Found at i:23954010 original size:144 final size:145
Alignment explanation
Indices: 23953572--23954464 Score: 1394
Period size: 144 Copynumber: 6.3 Consensus size: 145
23953562 TTTATTTCAT
* * * *
23953572 ACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCAAA
** ** *
23953637 CTTTAACCTAATTTAATTAAAAACCCTAACATTAACCTAATTTAATTAAAAACCCTAACCCTAAC
66 CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
23953702 CTAATTTAATT-AAA
131 CTAATTTAATTAAAA
23953716 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA-CCATA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCA-A
* *
23953780 ACCCTAACCTAATTTAATT-AAAACCCTAACCTTAACCTAATTTAATT-AAAACCCTAACATTAA
65 ACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAA
23953843 CCTAATTTAATTAAAA
130 CCTAATTTAATTAAAA
* * * * *
23953859 ACCCTAACCCTAATCTAATTTAATTAAAACCCCTAACATTAACCTAATTTAATTAAAACCCCAAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCAAA
*
23953924 CCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATT-AAAACCCTAACCTTAAC
66 CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
23953988 CTAATTTAATTAAAA
131 CTAATTTAATTAAAA
* * * *
23954003 ACCCTAACCTTAACCTAATTTAATTAAAAATCCTAACCCTACCCTAATTTAATTAAAAACCCTAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCAAA
* *
23954068 CCTTAACCTAATTTATTTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
66 CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
23954133 CTAATTTAATT-AAA
131 CTAATTTAATTAAAA
*
23954147 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCAAA
*
23954212 CCCTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAAC
66 CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
23954277 CTAATTTAATTAAAA
131 CTAATTTAATTAAAA
*
23954292 ACCCTAACCTTAACCTAATTTAATTAAAAA-CCTAACCTTAACCTAATTT-ATT--TAA---AAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCAAA
*
23954350 CCCTAACCTAATTTATTTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
66 CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
23954415 CTAATTTAATTAAAA
131 CTAATTTAATTAAAA
23954430 A--C---CC-TAACCTAATTTAATTAAAAACCCTAA-CTTAA
1 ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAA
23954465 TTTATTTAAA
Statistics
Matches: 705, Mismatches: 37, Indels: 26
0.92 0.05 0.03
Matches are distributed among these distances:
132 25 0.04
133 7 0.01
136 1 0.00
138 81 0.11
141 2 0.00
142 26 0.04
143 108 0.15
144 394 0.56
145 61 0.09
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.31
Consensus pattern (145 bp):
ACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCAAA
CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCTTAAC
CTAATTTAATTAAAA
Found at i:23954458 original size:18 final size:20
Alignment explanation
Indices: 23954413--23954478 Score: 60
Period size: 23 Copynumber: 3.0 Consensus size: 20
23954403 CCTAACCTTA
23954413 ACCTAATTTAATTAAAAACCC
1 ACCTAATTTAATTAAAAA-CC
23954434 TAACCTAATTTAATTAAAAACCC
1 --ACCTAATTTAATTAAAAA-CC
* *
23954457 TAACTTAATTTATTTAAAAACC
1 --ACCTAATTTAATTAAAAACC
23954479 CTAACCTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
22 2 0.05
23 39 0.95
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (20 bp):
ACCTAATTTAATTAAAAACC
Found at i:23955172 original size:29 final size:29
Alignment explanation
Indices: 23955115--23955172 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
23955105 GGAAAATGGA
*
23955115 CCATTCCGGTAAATAATCAAAAAATCGGC
1 CCATTCCGGTAAATAATCAAAAAAACGGC
* ** *
23955144 CCATTTCGGTAAATTTTGAAAAAAACGGC
1 CCATTCCGGTAAATAATCAAAAAAACGGC
23955173 TTTTTTAGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (29 bp):
CCATTCCGGTAAATAATCAAAAAAACGGC
Found at i:23956806 original size:7 final size:7
Alignment explanation
Indices: 23956794--23956821 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
23956784 ACAATATGTA
23956794 AGAGACT
1 AGAGACT
23956801 AGAGACT
1 AGAGACT
23956808 AGAGACT
1 AGAGACT
23956815 AGAGACT
1 AGAGACT
23956822 TAGACTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (7 bp):
AGAGACT
Found at i:23961251 original size:18 final size:18
Alignment explanation
Indices: 23961228--23961262 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23961218 AAGCCTTTAA
*
23961228 AAAAATGTATATATATTT
1 AAAAATGCATATATATTT
*
23961246 AAAAATGCGTATATATT
1 AAAAATGCATATATATT
23961263 ATATATTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.40
Consensus pattern (18 bp):
AAAAATGCATATATATTT
Found at i:23962885 original size:6 final size:6
Alignment explanation
Indices: 23962859--23962904 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
23962849 TCTACATTAA
* *
23962859 TTCATT TCTCATT TCTCATT TTCATT TTCATT CTAATT TTCATT TT
1 TTCATT T-TCATT T-TCATT TTCATT TTCATT TTCATT TTCATT TT
23962905 GGATAAAACC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 22 0.63
7 13 0.37
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (6 bp):
TTCATT
Found at i:23962897 original size:18 final size:19
Alignment explanation
Indices: 23962843--23962904 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 19
23962833 GAATTCCTTG
23962843 TTCATTTCTACATTAATTCATT
1 TTCATTTCTA-ATT--TTCATT
*
23962865 TCTCATTTCTCATTTTCATT
1 T-TCATTTCTAATTTTCATT
23962885 TTCA-TTCTAATTTTCATT
1 TTCATTTCTAATTTTCATT
23962903 TT
1 TT
23962905 GGATAAAACC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 3 0.08
20 7 0.19
22 4 0.11
23 8 0.22
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (19 bp):
TTCATTTCTAATTTTCATT
Found at i:23964514 original size:39 final size:37
Alignment explanation
Indices: 23964447--23964580 Score: 101
Period size: 39 Copynumber: 3.5 Consensus size: 37
23964437 ACCAGAATGG
*
23964447 CACCCAGTGTCTCATCGG-ATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGTCTCATCGGCA-AG-CCGAAG-AATAGTTGA
* *
23964486 CACCCAGTGTCTCATCGGCCAAGCCGAAGTA-AGTTGG
1 CACCCAGTGTCTCATCGG-CAAGCCGAAGAATAGTTGA
* ** * * *
23964523 TACCCAGTACCTCATCGAATCTATCCGAAGTAATAGTATGA
1 CACCCAGTGTCTCATCG--GCAAGCCGAAG-AATAGT-TGA
23964564 CACCCAGTGTCTCATCG
1 CACCCAGTGTCTCATCG
23964581 ACTCAAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
37 19 0.26
38 9 0.12
39 24 0.32
40 5 0.07
41 17 0.23
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (37 bp):
CACCCAGTGTCTCATCGGCAAGCCGAAGAATAGTTGA
Found at i:23965666 original size:27 final size:26
Alignment explanation
Indices: 23965617--23965672 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
23965607 AAATCCCAAA
* *
23965617 TTTCTTTCTTTCCTTCCCTTTTTCTT
1 TTTCTTTCTTTCCTCCCCTTTTTCGT
23965643 TTTCTTTCCTTT-CTCCCCTGTTTTCGT
1 TTTCTTT-CTTTCCTCCCCT-TTTTCGT
23965670 TTT
1 TTT
23965673 GCTATTCTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.00, C:0.30, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTCTTTCTTTCCTCCCCTTTTTCGT
Found at i:23973470 original size:9 final size:9
Alignment explanation
Indices: 23973456--23973541 Score: 55
Period size: 10 Copynumber: 8.9 Consensus size: 9
23973446 TTTTTAAATA
23973456 TAAAAATTT
1 TAAAAATTT
*
23973465 TAAAAAATATA
1 T-AAAAAT-TT
*
23973476 TAAAAATAT
1 TAAAAATTT
*
23973485 TAAAAACTT
1 TAAAAATTT
* *
23973494 TAAAAAGTA
1 TAAAAATTT
*
23973503 TAAATATTAT
1 TAAAAATT-T
*
23973513 AAAAAATATTT
1 -TAAAA-ATTT
23973524 TAAAATATTT
1 TAAAA-ATTT
23973534 TAAAAATT
1 TAAAAATT
23973542 AATTAATTGC
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
9 24 0.41
10 26 0.44
11 6 0.10
12 3 0.05
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (9 bp):
TAAAAATTT
Found at i:23973478 original size:20 final size:20
Alignment explanation
Indices: 23973453--23973490 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
23973443 AATTTTTTAA
*
23973453 ATATAAAAATTTTAAAAAAT
1 ATATAAAAATATTAAAAAAT
23973473 ATATAAAAATATTAAAAA
1 ATATAAAAATATTAAAAA
23973491 CTTTAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATAAAAATATTAAAAAAT
Found at i:23973482 original size:28 final size:27
Alignment explanation
Indices: 23973451--23973517 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 27
23973441 TTAATTTTTT
*
23973451 AAATATAAAAATTTTAAAAAATATATAA
1 AAATATAAAAACTTTAAAAAATATA-AA
*
23973479 AAATATTAAAAACTTTAAAAAGTATAAA
1 AAATA-TAAAAACTTTAAAAAATATAAA
* *
23973507 TATTATAAAAA
1 AAATATAAAAA
23973518 ATATTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.18
28 10 0.29
29 18 0.53
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (27 bp):
AAATATAAAAACTTTAAAAAATATAAA
Found at i:23973515 original size:18 final size:18
Alignment explanation
Indices: 23973454--23973522 Score: 52
Period size: 18 Copynumber: 3.7 Consensus size: 18
23973444 ATTTTTTAAA
* *
23973454 TATAAAAATTTTAAAAAAT
1 TATAAAAATATT-AAATAT
*
23973473 ATATAAAAATATTAAAAACT
1 -TATAAAAATATTAAATA-T
23973493 T-TAAAAAGTA-TAAATAT
1 TATAAAAA-TATTAAATAT
23973510 TATAAAAAATATT
1 TAT-AAAAATATT
23973523 TTAAAATATT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
17 2 0.05
18 14 0.33
19 14 0.33
20 12 0.29
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (18 bp):
TATAAAAATATTAAATAT
Found at i:23976654 original size:21 final size:21
Alignment explanation
Indices: 23976615--23976669 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
23976605 TCAAGAAATC
*
23976615 TTTAACGAAACTTTAAAGTAAG
1 TTTAA-GAACCTTTAAAGTAAG
*
23976637 TTTAAGAACCTTTTAAGTAAG
1 TTTAAGAACCTTTAAAGTAAG
*
23976658 TTTAGGAACCTT
1 TTTAAGAACCTT
23976670 CTAATCATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (21 bp):
TTTAAGAACCTTTAAAGTAAG
Found at i:23981058 original size:21 final size:20
Alignment explanation
Indices: 23981034--23981072 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23981024 TCTTTCTTCA
*
23981034 CATAAAATATTTAAAAAAATT
1 CATAAAAT-TGTAAAAAAATT
23981055 CATAAAATTGTAAAAAAA
1 CATAAAATTGTAAAAAAA
23981073 AAAGTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (20 bp):
CATAAAATTGTAAAAAAATT
Found at i:23990491 original size:17 final size:17
Alignment explanation
Indices: 23990471--23990503 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23990461 TTTTAATTGT
*
23990471 TTTTATATTTTTTTTAG
1 TTTTATATCTTTTTTAG
23990488 TTTTATATCTTTTTTA
1 TTTTATATCTTTTTTA
23990504 AATTCTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTATATCTTTTTTAG
Found at i:23990617 original size:17 final size:18
Alignment explanation
Indices: 23990595--23990639 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
23990585 ATAATTTTTC
23990595 TAAATTTTTGTA-ATATT
1 TAAATTTTTGTATATATT
* *
23990612 TAAATTTTTTTATATTTT
1 TAAATTTTTGTATATATT
23990630 TATAATTTTT
1 TA-AATTTTT
23990640 AAAAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.46
18 6 0.25
19 7 0.29
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TAAATTTTTGTATATATT
Found at i:23990637 original size:9 final size:9
Alignment explanation
Indices: 23990430--23990653 Score: 75
Period size: 9 Copynumber: 24.2 Consensus size: 9
23990420 AAGTTTCTAC
23990430 ATTTTTATA
1 ATTTTTATA
23990439 ACTTTTTAATA
1 A-TTTTT-ATA
* *
23990450 ACTTTTATTT
1 ATTTTTA-TA
* *
23990460 ATTTTAATT
1 ATTTTTATA
*
23990469 GTTTTTAT-
1 ATTTTTATA
* *
23990477 ATTTTTTTT
1 ATTTTTATA
*
23990486 AGTTTTAT-
1 ATTTTTATA
*
23990494 ATCTTTTTTA
1 AT-TTTTATA
* *
23990504 AATTCTATA
1 ATTTTTATA
*
23990513 ATTTCTA-A
1 ATTTTTATA
23990521 ATTTTTTATA
1 A-TTTTTATA
23990531 ATATTTTCAT-
1 AT-TTTT-ATA
*
23990541 ATTCTTCATAA
1 ATT-TTTAT-A
* *
23990552 CATATTAATA
1 -ATTTTTATA
23990562 ATATTTTATA
1 AT-TTTTATA
* *
23990572 ATATTCAT-
1 ATTTTTATA
23990580 -TTTTTATA
1 ATTTTTATA
*
23990588 ATTTTTCTAA
1 ATTTTTAT-A
*
23990598 ATTTTTGTA
1 ATTTTTATA
*
23990607 ATATTTA-A
1 ATTTTTATA
*
23990615 ATTTTTTTA
1 ATTTTTATA
23990624 TATTTTTATA
1 -ATTTTTATA
*
23990634 ATTTTTAAA
1 ATTTTTATA
*
23990643 AATTTTATA
1 ATTTTTATA
23990652 AT
1 AT
23990654 ATGTTAATAA
Statistics
Matches: 158, Mismatches: 37, Indels: 40
0.67 0.16 0.17
Matches are distributed among these distances:
7 5 0.03
8 15 0.09
9 76 0.48
10 50 0.32
11 10 0.06
12 2 0.01
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Found at i:23990709 original size:30 final size:31
Alignment explanation
Indices: 23990675--23990761 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 31
23990665 TGTTATGCTT
23990675 AAATAATTAAAAATCAATTAAACA-CTTCTA
1 AAATAATTAAAAATCAATTAAACACCTTCTA
*
23990705 AAATAATTTTAAAAAAAATCAATT-AACACCTTGTA
1 AAATAA--TT---AAAAATCAATTAAACACCTTCTA
23990740 AAATAATTAAAAATCAATTAAA
1 AAATAATTAAAAATCAATTAAA
23990762 TCCTCCGTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 13
0.78 0.02 0.21
Matches are distributed among these distances:
30 17 0.35
31 2 0.04
32 2 0.04
33 2 0.04
34 4 0.08
35 22 0.45
ACGTcount: A:0.59, C:0.10, G:0.01, T:0.30
Consensus pattern (31 bp):
AAATAATTAAAAATCAATTAAACACCTTCTA
Found at i:23991366 original size:3 final size:3
Alignment explanation
Indices: 23991358--23991383 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23991348 TTTGGCTTTA
23991358 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
23991384 GCTTAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23992616 original size:3 final size:3
Alignment explanation
Indices: 23992608--23992667 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
23992598 TGCGGTAAGT
* * *
23992608 ATA ATA ATA AAA ATA TATA AT- ATA ATG ATA ATA A-A CTA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23992652 ATA CAGTA ATA ATA AT
1 ATA -A-TA ATA ATA AT
23992668 GTAATATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 3 0.07
3 36 0.78
4 5 0.11
5 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:23994358 original size:6 final size:6
Alignment explanation
Indices: 23994349--23994376 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23994339 TATTTGAATT
23994349 TATTTA TATTTA TATTTA TATTTA TATT
1 TATTTA TATTTA TATTTA TATTTA TATT
23994377 ATAACGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:23994412 original size:24 final size:24
Alignment explanation
Indices: 23994385--23994433 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
23994375 TTATAACGAA
23994385 AGCATTCATCATTTGAACAAAAAC
1 AGCATTCATCATTTGAACAAAAAC
23994409 AGCATTCATCATTTGAACAAAAAC
1 AGCATTCATCATTTGAACAAAAAC
23994433 A
1 A
23994434 AGTTTAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.24
Consensus pattern (24 bp):
AGCATTCATCATTTGAACAAAAAC
Found at i:23998120 original size:217 final size:217
Alignment explanation
Indices: 23997466--23999186 Score: 1873
Period size: 217 Copynumber: 7.9 Consensus size: 217
23997456 TTTTAGGGAT
* * * * * * *
23997466 ATGAGTGACAACCTTGAAAGGTCAACTGGTA-TTATGATCAACGTACGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGT
* ** * *
23997530 AATAAGCATTTTGATTTTTTGGTTTTTGTGACTTTTGCATTAATAAAAGTGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * **
23997595 GTGATTGAGTATTGAAGCGATATGACAATTATTAACTTTTCCACATATTTATTGTCGGCTTGTTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
* *
23997660 GTGAGCAGCCATAACATTGGGAAC
195 GTGA-CAGTCATAACGTTGGGAAC
* * * * * **
23997684 ATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAGCATACGTTGGGAACATGCATGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGT
* * * * * * * * * *
23997749 AATAAGCGTTTTAATTTTTTGGGTTTTGCGACTTTTTCATGAATAAATGTGATACACGTTTCTAA
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * *
23997814 GTGACTGAGTA-TGAAGCAATGTGACAATCATTAACTTTTCCTCATATTTATTGTTGATTTGTTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
* *
23997878 GTGAACAGTCAGAACATTGGGAAC
195 GTG-ACAGTCATAACGTTGGGAAC
* *
23997902 ATGAGTGACAACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTA
1 ATGAGTGACGACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGTA
** * * ** * ** *
23997967 ATAAGTGTTTTGATTTTTAGGGATTTACGACTTTTTCATTAATAAATGTGATACACATTTTCATG
66 ATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCATG
** * * * * *
23998032 TGACCGAGTATTGAAGCGACACGACAATTATTAACTTTAT-CTCGTATTTATTGTCGATTTGCTA
131 TGATTGAGTATTGAAGCGATATGACAATCATTAACTTT-TCCTCATATTTATTGTCGATTTGTTA
* * * *
23998096 GTGATAGTTATAACATTAGGAAC
195 GTGACAGTCATAACGTTGGGAAC
** * * **
23998119 ATGAGTGGTGACTTTGAAAGTCAACT-AGTACTTATAATTAACATATGTTAGGAACATGCATGGT
1 ATGAGTGACGACCTTGAAAGTCAATTGA-TACTTATAATTAACATATGTTAGGAACATGTGTGGT
* * ** * *
23998183 AATAAACTTTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
** * * * * * *
23998248 GTGATTGAACACTAAAGCAAT-TCGACAATCATTAACTTTTGCACATACTTATTGTCGATTTGTT
130 GTGATTGAGTATTGAAGCGATAT-GACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTT
* *
23998312 AGTAAGCAGCCATAACGTTGGGAAC
194 AGTGA-CAGTCATAACGTTGGGAAC
* * * * * * **
23998337 ATGA-TGACGACCTTGAAAGGTCAATTGGTATTTATGATTAGCATACGTTGGGAACATACGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGT
* * * * *
23998401 AATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTGCATTAATAAATGCGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * * * ** *
23998466 ATGATTGATTATAGAAGCGATGTGACAATCATTAAATTTTCCTTGTATTTATTTTCGATTTGTTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
*
23998531 GTGA-ATGGTCAGAACGTTGGGAAC
195 GTGACA--GTCATAACGTTGGGAAC
* * * * * *
23998555 ATGAGTAACCACCTTGAAAGTTAATTGGTACTTATAATTAACGTATGTTAAGAACATGTGTGGTA
1 ATGAGTGACGACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGTA
* * * * *
23998620 ACAAGCGTTCTGATTTTTTGGGATTTGTAACTTTTGCGTTAATAAATGTGATGCACAT-TTT-CA
66 ATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGAT--ACATGTTTCCA
* * * *
23998683 TGTGATTGAGTATTGAATCGATAT-AGCAATCATTAACTTTTCCTCACATTTATTGTTGATTTGC
129 TGTGATTGAGTATTGAAGCGATATGA-CAATCATTAACTTTTCCTCATATTTATTGTCGATTTGT
*
23998747 TAGTGACCGTCATAACGTTGGGAAC
193 TAGTGACAGTCATAACGTTGGGAAC
* **
23998772 ATGAGTGACGACCTTGAAAGTCAACT-AGTACTTATAATTAATGTATGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAAGTCAATTGA-TACTTATAATTAACATATGTTAGGAACATGTGTGGT
** * *
23998836 AATAAGCATTCTGATTTTCGGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTTCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * * *
23998901 GAGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTATTGATTTGCTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
*
23998966 GTGACAGTTATAACGTTGGGAAC
195 GTGACAGTCATAACGTTGGGAAC
* *
23998989 ATGAGTGACGACCTTGAAAGTCAAAT-AGTACTTATAATTAACGTATGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAAGTCAATTGA-TACTTATAATTAACATATGTTAGGAACATGTGTGGT
** *
23999053 AATAAGCATTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCAT
65 AATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCAT
* * * * * * *
23999118 GTGATTGAATATTGAAGCGATATGACAATCATTAACTTTTGCACATACTTATTATCGGTTTGGTA
130 GTGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTA
23999183 GTGA
195 GTGA
23999187 ACAGACGTAA
Statistics
Matches: 1273, Mismatches: 208, Indels: 45
0.83 0.14 0.03
Matches are distributed among these distances:
215 4 0.00
216 6 0.00
217 673 0.53
218 476 0.37
219 110 0.09
220 4 0.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (217 bp):
ATGAGTGACGACCTTGAAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGTGGTA
ATAAGCATTCTGATTTTTTGGGATTTGTGACTTTTACATTAATAAATGTGATACATGTTTCCATG
TGATTGAGTATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTGTCGATTTGTTAG
TGACAGTCATAACGTTGGGAAC
Found at i:23998720 original size:653 final size:653
Alignment explanation
Indices: 23997466--23999190 Score: 2237
Period size: 653 Copynumber: 2.6 Consensus size: 653
23997456 TTTTAGGGAT
* * * * *
23997466 ATGAGTGACAACCTTGAAAGGTCAACTGGTA-TTATGATCAACGTACGTTAGGAACATGTGTGGT
1 ATGAGTGACGACCTTGAAA-GTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGT
** ** * * *
23997530 AATAAGCATTT-TGATTTTTTGGTTTTTGTGACTTTTGCATTAATAAAAGTGATACATGTTTCCA
65 AATAAGC-TTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCA
* * **
23997594 TGTGATTGAGTATTGAAGCGATATGACAATTATTAACTTTTCCACATATTTATTGTCGGCTTGTT
129 TGTGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTT
*
23997659 AGTGAGCAGCCATAACATTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATT
194 AGTGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATT
* * * *
23997724 AGCATACGTTGGGAACATGCATGGTAATAAGCGTTTTAATTTTTTGGGTTTTGCGACTTTTTCAT
259 AGCATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTACAT
* * * * * *
23997789 GAATAAATGTGATACACGTTTCTA-AGTGACTGAGTATGAAGCAATGTGACAATCATTAACTTTT
324 TAATAAATGTGATACATGTTTCCATA-TGATTGAATATGAAGCGATGTGACAATCATTAACTTTT
*
23997853 CCTCATATTTATTGTTGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTG
388 CCTCATATTTATTGTTGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTAACAACCTTG
* * * *
23997918 AAAGTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGTGTTTTGATTT
453 AAAGTCAATTGATACTTATAATTAACATATGTTAAGAACATGTGCGGTAACAAGCGTTCTGATTT
* *
23997983 TTAGGGATTTACGACTTTTTCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAG
518 TTAGGGATTTACAACTTTTGCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAG
* * ** * *
23998048 CGACACGACAATTATTAACTTTAT-CTCGTATTTATTGTCGATTTGCTAGTGATAGTTATAACAT
583 CGACAAGACAATCATTAACTTT-TCCTCACATTTATTGTCGATTTGCTAGTGACAGTCATAACAT
23998112 TAGGAAC
647 TAGGAAC
** * * **
23998119 ATGAGTGGTGACTTTGAAAGTCAACTAGTACTTATAATTAACATATGTTAGGAACATGCATGGTA
1 ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
* *
23998184 ATAAACTTTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCCATG
66 ATAAGCTTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCATG
* * * * * *
23998249 TGATTGAACACTAAAGCAAT-TCGACAATCATTAACTTTTGCACATACTTATTGTCGATTTGTTA
131 TGATTGAATATTGAAGCGATAT-GACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTTA
* *
23998313 GTAAGCAGCCATAACGTTGGGAACATGA-TGACGACCTTGAAAGGTCAATTGGTATTTATGATTA
195 GTGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTA
* *
23998377 GCATACGTTGGGAACATACGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTGCATT
260 GCATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTACATT
* * *
23998442 AATAAATGCGATACATGTTTCCATATGATTGATTATAGAAGCGATGTGACAATCATTAAATTTTC
325 AATAAATGTGATACATGTTTCCATATGATTGAATAT-GAAGCGATGTGACAATCATTAACTTTTC
** ** * *
23998507 CTTGTATTTATT-TTCGATTTGTTAGTGAATGGTCAGAACGTTGGGAACATGAGTAACCACCTTG
389 CTCATATTTATTGTT-GATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTAACAACCTTG
* * * *
23998571 AAAGTTAATTGGTACTTATAATTAACGTATGTTAAGAACATGTGTGGTAACAAGCGTTCTGATTT
453 AAAGTCAATTGATACTTATAATTAACATATGTTAAGAACATGTGCGGTAACAAGCGTTCTGATTT
* ** * * ** *
23998636 TTTGGGATTTGTAACTTTTGCGTTAATAAATGTGATGCACATTTTCATGTGATTGAGTATTGAAT
518 TTAGGGATTTACAACTTTTGCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAG
* * * *
23998701 CGATATAG-CAATCATTAACTTTTCCTCACATTTATTGTTGATTTGCTAGTGACCGTCATAACGT
583 CGACA-AGACAATCATTAACTTTTCCTCACATTTATTGTCGATTTGCTAGTGACAGTCATAACAT
*
23998765 TGGGAAC
647 TAGGAAC
*
23998772 ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAATGTATGTTAGGAACATGTGTGGTA
1 ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
* * *
23998837 ATAAGCATTCTGATTTTCGGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTTCATG
66 ATAAGCTTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCATG
* * * * *
23998902 AGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCTCATATTTATTATTGATTTGCTAG
131 TGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTTAG
** * * * *
23998967 TGA-CAGTTATAACGTTGGGAACATGAGTGACGACCTTGAAA-GTCAAATAGTACTTATAATTAA
196 TGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAG
* * * * * ** * *
23999030 CGTATGTTAGGAACATGTGTGGTAATAAGCATTCTGATTTTCAGGGATTTGTGACTTTTACATTA
261 CATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTACATTA
* * * *
23999095 ATGAATGTGATACATGTTTCCATGTGATTGAATATTGAAGCGATATGACAATCATTAACTTTTGC
326 ATAAATGTGATACATGTTTCCATATGATTGAATA-TGAAGCGATGTGACAATCATTAACTTTTCC
* * * * * *
23999160 ACATACTTATTATCGGTTTGGTAGTGAACAG
390 TCATATTTATTGTTGATTTGTTAGTGAACAG
23999191 ACGTAACTCT
Statistics
Matches: 920, Mismatches: 140, Indels: 25
0.85 0.13 0.02
Matches are distributed among these distances:
652 308 0.33
653 610 0.66
654 2 0.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (653 bp):
ATGAGTGACGACCTTGAAAGTCAACTAGTACTTATAATTAACGTATGTTAGGAACATGTGTGGTA
ATAAGCTTTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTCCATG
TGATTGAATATTGAAGCGATATGACAATCATTAACTTTTCCACATATTTATTGTCGATTTGTTAG
TGAGCAGCCATAACGTTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAG
CATACGTTGGGAACATGCGTGGTAATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTACATTA
ATAAATGTGATACATGTTTCCATATGATTGAATATGAAGCGATGTGACAATCATTAACTTTTCCT
CATATTTATTGTTGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTAACAACCTTGAAA
GTCAATTGATACTTATAATTAACATATGTTAAGAACATGTGCGGTAACAAGCGTTCTGATTTTTA
GGGATTTACAACTTTTGCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAGCGA
CAAGACAATCATTAACTTTTCCTCACATTTATTGTCGATTTGCTAGTGACAGTCATAACATTAGG
AAC
Found at i:23999155 original size:870 final size:871
Alignment explanation
Indices: 23997466--23999184 Score: 2347
Period size: 870 Copynumber: 2.0 Consensus size: 871
23997456 TTTTAGGGAT
* **
23997466 ATGAGTGACAACCTTGAAAGGTCAACTGGTATTATGATCAACGTACGTTAGGAACATGTGTGGTA
1 ATGAGTGACAACCTTGAAAGGTCAACTGGTATTATGATCAACATACGTTAGGAACATACGTGGTA
* * * *
23997531 ATAAGCATTTTGATTTTTTGGTTTTTGTGACTTTTGCATTAATAAAAGTGATACATGTTTCCATG
66 ATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTGCATTAATAAAAGCGATACATGTTTCCATA
* * * *
23997596 TGATTGAGTATTGAAGCGATATGACAATTATTAACTTTTCCACATATTTATTGTCGGCTTGTTAG
131 TGATTGAGTATAGAAGCGATATGACAATCATTAAATTTTCCACATATTTATTGTCGACTTGTTAG
* * * * * *
23997661 TGAGCAGCCATAACATTGGGAACATGAGTGACGACCTTGAAAGGTCAATTGGTACTTATGATTAG
196 TGAACAGCCAGAACATTGGGAACATGAGTAACCACCTTGAAAGGTCAATTGGTACTTATAATTAA
** * * * * *
23997726 CATACGTTGGGAACATGCATGGTAATAAGCGTTTTAATTTTTTGGGTTTTGCGACTTTTTCATGA
261 CATACGTTAAGAACATGCATGGTAACAAGCGTTCTAATTTTTTGGGATTTGCAACTTTTGCATGA
*
23997791 ATAAATGTGATACACGTTTCTAAGTGACTGAGTATGAAGCAATGTGACAATCATTAACTTTTCCT
326 ATAAATGTGATACACGTTTCTAAGTGACTGAGTATGAAGCAATATGACAATCATTAACTTTTCCT
* *
23997856 CATATTTATTGTTGATTTGTTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTGAAA
391 CACATTTATTGTTGATTTGCTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTGAAA
* ** * *
23997921 GTCAATTGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGTGTTTTGATTTTTA
456 GTCAATAGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGCATTCTGATTTTCA
* * *
23997986 GGGATTTACGACTTTTTCATTAATAAATGTGATACACATTTTCATGTGACCGAGTATTGAAGCGA
521 GGGATTTACGACTTTTACATTAATAAATGTGATACACATTTTCATGAGACCGAATATTGAAGCGA
* * * *
23998051 CACGACAATTATTAACTTTATCTCGTATTTATTGTCGATTTGCTAGTGATAGTTATAACATTAGG
586 CACGACAATCATTAACTTTATCTCATATTTATTATCGATTTGCTAGTGACAGTTATAACATTAGG
** * *
23998116 AACATGAGTGGTGACTTTGAAAGTCAACTAGTACTTATAATTAACATATGTTAGGAACATGCATG
651 AACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACATATGTTAGGAACATGCATG
*
23998181 GTAATAAACTTTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCC
716 GTAATAAACATTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCC
* *
23998246 ATGTGATTGAACACTAAAGCAATTCGACAATCATTAACTTTTGCACATACTTATTGTCGATTTGT
781 ATGTGATTGAACACTAAAGCAATTCGACAATCATTAACTTTTGCACATACTTATTATCGATTTGG
23998311 TAGTAAGCAGCCATAACGTTGGGAAC
846 TAGTAAGCAGCCATAACGTTGGGAAC
* * * * *
23998337 ATGA-TGACGACCTTGAAAGGTCAATTGGTATTTATGATTAGCATACGTTGGGAACATACGTGGT
1 ATGAGTGACAACCTTGAAAGGTCAACTGGTA-TTATGATCAACATACGTTAGGAACATACGTGGT
*
23998401 AATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTGCATTAATAAATGCGATACATGTTTCCAT
65 AATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTGCATTAATAAAAGCGATACATGTTTCCAT
* * *** * *
23998466 ATGATTGATTATAGAAGCGATGTGACAATCATTAAATTTTCCTTGTATTTATTTTCGATTTGTTA
130 ATGATTGAGTATAGAAGCGATATGACAATCATTAAATTTTCCACATATTTATTGTCGACTTGTTA
** * * *
23998531 GTGAATGGTCAGAACGTTGGGAACATGAGTAACCACCTTGAAA-GTTAATTGGTACTTATAATTA
195 GTGAACAGCCAGAACATTGGGAACATGAGTAACCACCTTGAAAGGTCAATTGGTACTTATAATTA
* * ** * * * *
23998595 ACGTATGTTAAGAACATGTGTGGTAACAAGCGTTCTGATTTTTTGGGATTTGTAACTTTTGCGTT
260 ACATACGTTAAGAACATGCATGGTAACAAGCGTTCTAATTTTTTGGGATTTGCAACTTTTGCATG
* * * * * *
23998660 AATAAATGTGATGCACATTT-TCATGTGATTGAGTATTGAATCGATAT-AGCAATCATTAACTTT
325 AATAAATGTGATACACGTTTCT-AAGTGACTGAGTA-TGAAGCAATATGA-CAATCATTAACTTT
* * * *
23998723 TCCTCACATTTATTGTTGATTTGCTAGTG-ACCGTCATAACGTTGGGAACATGAGTGACGACCTT
387 TCCTCACATTTATTGTTGATTTGCTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTT
** *
23998787 GAAAGTCAACTAG-TACTTATAATTAATGTATGTTAGGAACATGTGTGGTAATAAGCATTCTGAT
452 GAAAGTCAA-TAGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGCATTCTGAT
* ** * ** **
23998851 TTTCGGGGATTTGTGACTTTTACATTAATGAATGTGATACATGTTTTCATGAGATTGAATATTGA
516 TTTCAGGGATTTACGACTTTTACATTAATAAATGTGATACACATTTTCATGAGACCGAATATTGA
* * *
23998916 AGCGATATGACAATCATTAACTTT-TCCTCATATTTATTATTGATTTGCTAGTGACAGTTATAAC
581 AGCGACACGACAATCATTAACTTTAT-CTCATATTTATTATCGATTTGCTAGTGACAGTTATAAC
* * *
23998980 GTTGGGAACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACGTATGTTAGGAACA
645 ATTAGGAACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACATATGTTAGGAACA
** * *
23999045 TGTGTGGTAATAAGCATTCTGATTTTCAGGGATTTGTGACTTTTACATTAATGAATGTGATACAT
710 TGCATGGTAATAAACATTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACAT
* * * *
23999110 GTTTCCATGTGATTGAATATTGAAGCGATAT-GACAATCATTAACTTTTGCACATACTTATTATC
775 GTTTCCATGTGATTGAACACTAAAGCAAT-TCGACAATCATTAACTTTTGCACATACTTATTATC
*
23999174 GGTTTGGTAGT
839 GATTTGGTAGT
23999185 GAACAGACGT
Statistics
Matches: 733, Mismatches: 108, Indels: 15
0.86 0.13 0.02
Matches are distributed among these distances:
869 2 0.00
870 499 0.68
871 232 0.32
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (871 bp):
ATGAGTGACAACCTTGAAAGGTCAACTGGTATTATGATCAACATACGTTAGGAACATACGTGGTA
ATAAGCATTTTGATTTTTTGGGTTTTGCGACTTTTGCATTAATAAAAGCGATACATGTTTCCATA
TGATTGAGTATAGAAGCGATATGACAATCATTAAATTTTCCACATATTTATTGTCGACTTGTTAG
TGAACAGCCAGAACATTGGGAACATGAGTAACCACCTTGAAAGGTCAATTGGTACTTATAATTAA
CATACGTTAAGAACATGCATGGTAACAAGCGTTCTAATTTTTTGGGATTTGCAACTTTTGCATGA
ATAAATGTGATACACGTTTCTAAGTGACTGAGTATGAAGCAATATGACAATCATTAACTTTTCCT
CACATTTATTGTTGATTTGCTAGTGAACAGTCAGAACATTGGGAACATGAGTGACAACCTTGAAA
GTCAATAGATACTTATAATTAACATATGTTAGGAACATGTGCGGTAATAAGCATTCTGATTTTCA
GGGATTTACGACTTTTACATTAATAAATGTGATACACATTTTCATGAGACCGAATATTGAAGCGA
CACGACAATCATTAACTTTATCTCATATTTATTATCGATTTGCTAGTGACAGTTATAACATTAGG
AACATGAGTGACGACCTTGAAAGTCAAATAGTACTTATAATTAACATATGTTAGGAACATGCATG
GTAATAAACATTCTGATTTTCAGGGATTTGTGACTTTAACATTAATGAATGTGATACATGTTTCC
ATGTGATTGAACACTAAAGCAATTCGACAATCATTAACTTTTGCACATACTTATTATCGATTTGG
TAGTAAGCAGCCATAACGTTGGGAAC
Found at i:24017204 original size:20 final size:21
Alignment explanation
Indices: 24017170--24017208 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
24017160 AAATACAATT
24017170 ATAAAAATAAATAAAATTAAG
1 ATAAAAATAAATAAAATTAAG
*
24017191 ATAAAAAT-ATTAAAATTA
1 ATAAAAATAAATAAAATTA
24017209 TGTACTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (21 bp):
ATAAAAATAAATAAAATTAAG
Found at i:24019520 original size:19 final size:19
Alignment explanation
Indices: 24019483--24019571 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
24019473 GTAAGAGAAA
* *
24019483 ACTAGCAAATATAGTGCAT
1 ACTAGCACATAAAGTGCAT
*
24019502 ACTAGCACATAAAGCGCAT
1 ACTAGCACATAAAGTGCAT
*
24019521 CCTAGTGCACA-AAA-TGCAT
1 ACTA--GCACATAAAGTGCAT
**
24019540 ACTAGCACACGAAGTGCAT
1 ACTAGCACATAAAGTGCAT
24019559 ACT-GACACATAAA
1 ACTAG-CACATAAA
24019572 ACGCATCCTG
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
17 5 0.09
18 3 0.05
19 40 0.71
20 3 0.05
21 5 0.09
ACGTcount: A:0.42, C:0.24, G:0.16, T:0.19
Consensus pattern (19 bp):
ACTAGCACATAAAGTGCAT
Found at i:24021213 original size:3 final size:3
Alignment explanation
Indices: 24021207--24021263 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
24021197 AGTAGTAGAC
24021207 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
24021255 GAA GAA GAA
1 GAA GAA GAA
24021264 AGCTTGATTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:24021403 original size:4 final size:4
Alignment explanation
Indices: 24021394--24021455 Score: 115
Period size: 4 Copynumber: 15.5 Consensus size: 4
24021384 TTTATGTTAC
*
24021394 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ACAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
24021442 ATAA ATAA ATAA AT
1 ATAA ATAA ATAA AT
24021456 GATGTTGATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:24023027 original size:18 final size:18
Alignment explanation
Indices: 24022992--24023035 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24022982 ATTTTAATTT
* *
24022992 TGAAAGTAAGAATAAAAA
1 TGAAAATAACAATAAAAA
*
24023010 TGAAAATAACAATTAAAA
1 TGAAAATAACAATAAAAA
*
24023028 TAAAAATA
1 TGAAAATA
24023036 TTAAAAGTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (18 bp):
TGAAAATAACAATAAAAA
Found at i:24023604 original size:14 final size:14
Alignment explanation
Indices: 24023585--24023624 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
24023575 TTGATTGGCA
24023585 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
24023599 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
24023613 GGAAAATGTTTT
1 GTAAAATGTTTT
24023625 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:24023633 original size:20 final size:20
Alignment explanation
Indices: 24023608--24023647 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24023598 CGTAAAATGA
*
24023608 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
24023628 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
24023648 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:24023637 original size:34 final size:35
Alignment explanation
Indices: 24023593--24023659 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
24023583 CAGTAAAATG
*
24023593 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
24023627 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
24023660 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:24023663 original size:14 final size:15
Alignment explanation
Indices: 24023587--24023663 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
24023577 GATTGGCAGT
* *
24023587 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
24023601 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
24023615 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
24023635 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
24023650 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
24023664 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:24023771 original size:20 final size:20
Alignment explanation
Indices: 24023746--24023784 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
24023736 GTTTTTACAT
24023746 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
24023766 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
24023785 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:24023844 original size:15 final size:15
Alignment explanation
Indices: 24023815--24023867 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 15
24023805 TATTGCAATG
*
24023815 ATTTATTTATAAATAA
1 ATTT-TTTATTAATAA
24023831 ATTTTTTATTAATAAA
1 ATTTTTTATTAAT-AA
24023847 AGTTTTTTATCTAATTAA
1 A-TTTTTTAT-TAA-TAA
24023865 ATT
1 ATT
24023868 CCAAATGTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 8 0.25
16 7 0.22
17 10 0.31
18 6 0.19
19 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTTTTATTAATAA
Found at i:24026554 original size:11 final size:11
Alignment explanation
Indices: 24026538--24026563 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24026528 AACCATCTGT
24026538 ATATAACCAAA
1 ATATAACCAAA
24026549 ATATAACCAAA
1 ATATAACCAAA
24026560 ATAT
1 ATAT
24026564 CATCCAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (11 bp):
ATATAACCAAA
Found at i:24026867 original size:6 final size:6
Alignment explanation
Indices: 24026843--24026886 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
24026833 GTTGCAATCC
* *
24026843 AAGGGG AAGGGA AAAGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
24026887 GAAGAAGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:24028138 original size:37 final size:38
Alignment explanation
Indices: 24028057--24028147 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 38
24028047 TGGATGGAAG
* **
24028057 TAAA-TTTTAAAAGTT-AAATTTTTGAAAAATTAAATT
1 TAAATTTTTGAAAGTTAAAATTTTTGAAAAACAAAATT
* * *
24028093 TGATTTTTTTAAA-TTAAAATTTTTGAAAAACAAAATT
1 TAAATTTTTGAAAGTTAAAATTTTTGAAAAACAAAATT
24028130 TAAATTTTTGAAAGTTAA
1 TAAATTTTTGAAAGTTAA
24028148 GGAACTTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
36 4 0.09
37 36 0.82
38 4 0.09
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.45
Consensus pattern (38 bp):
TAAATTTTTGAAAGTTAAAATTTTTGAAAAACAAAATT
Found at i:24028475 original size:37 final size:37
Alignment explanation
Indices: 24028433--24028504 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
24028423 CTGAGAATCG
*
24028433 TTACTGTTCATCTCCATTTTTTATTTGCAGAGAATTT
1 TTACTGTTCATCTCCATTTTTTATTTGCAAAGAATTT
* ** *
24028470 TTACTGTTTATCTCTGTTTTTTCTTTGCAAAGAAT
1 TTACTGTTCATCTCCATTTTTTATTTGCAAAGAAT
24028505 CACTCATGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (37 bp):
TTACTGTTCATCTCCATTTTTTATTTGCAAAGAATTT
Found at i:24028520 original size:37 final size:37
Alignment explanation
Indices: 24028474--24028620 Score: 159
Period size: 37 Copynumber: 4.0 Consensus size: 37
24028464 GAATTTTTAC
* * * *
24028474 TGTTTATCTCTGTTTTTTCTTTGCAAAGAATCACTCA
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
* * *
24028511 TGTTCATCTCAGTCTTTTCTTTGTAGAGAATCTCTCT
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
* * * * *
24028548 TGTTCATCTTTATCTTTTCTTTATAGGGAATCACTCC
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
* * *
24028585 TGTTCATATCTGTCTTTGCTTTGTAGGGAATCACTC
1 TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTC
24028621 TTGCTTATCT
Statistics
Matches: 91, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (37 bp):
TGTTCATCTCTGTCTTTTCTTTGTAGAGAATCACTCA
Found at i:24028638 original size:37 final size:37
Alignment explanation
Indices: 24028501--24028652 Score: 157
Period size: 37 Copynumber: 4.1 Consensus size: 37
24028491 TCTTTGCAAA
* *
24028501 GAATCACTCATGTTCATC-TCAGTCTTTTCTTTGTAGA
1 GAATCACTCTTGTTCATCTTCA-TCTTTTCTTTGTAGG
* * *
24028538 GAATCTCTCTTGTTCATCTTTATCTTTTCTTTATAGG
1 GAATCACTCTTGTTCATCTTCATCTTTTCTTTGTAGG
* * * *
24028575 GAATCACTCCTGTTCAT-ATCTGTCTTTGCTTTGTAGG
1 GAATCACTCTTGTTCATCTTC-ATCTTTTCTTTGTAGG
* *
24028612 GAATCACTCTTGCTT-ATCTTCATCTTTACTTTGCAGG
1 GAATCACTCTTG-TTCATCTTCATCTTTTCTTTGTAGG
24028649 GAAT
1 GAAT
24028653 ATTTGAAGGT
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
36 1 0.01
37 87 0.93
38 6 0.06
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.45
Consensus pattern (37 bp):
GAATCACTCTTGTTCATCTTCATCTTTTCTTTGTAGG
Found at i:24028650 original size:74 final size:74
Alignment explanation
Indices: 24028492--24028652 Score: 198
Period size: 74 Copynumber: 2.2 Consensus size: 74
24028482 TCTGTTTTTT
** * * *
24028492 CTTTGCAAAGAATCACTCATGTTCATCTCAGTCTTTTCTTTGTAGAGAATCTCTCTTGTTCATCT
1 CTTTGCAGGGAATCACTCATGTTCATATCAGTCTTTGCTTTGTAGAGAATCACTCTTGTTCATCT
* *
24028557 TTATCTTTT
66 TCATCTTTA
** * * *
24028566 CTTTATAGGGAATCACTCCTGTTCATATCTGTCTTTGCTTTGTAGGGAATCACTCTTGCTT-ATC
1 CTTTGCAGGGAATCACTCATGTTCATATCAGTCTTTGCTTTGTAGAGAATCACTCTTG-TTCATC
24028630 TTCATCTTTA
65 TTCATCTTTA
24028640 CTTTGCAGGGAAT
1 CTTTGCAGGGAAT
24028653 ATTTGAAGGT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
74 70 0.97
75 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (74 bp):
CTTTGCAGGGAATCACTCATGTTCATATCAGTCTTTGCTTTGTAGAGAATCACTCTTGTTCATCT
TCATCTTTA
Found at i:24031470 original size:5 final size:5
Alignment explanation
Indices: 24031462--24031542 Score: 90
Period size: 5 Copynumber: 16.2 Consensus size: 5
24031452 TAATTTATTA
* * *
24031462 CATAT CATAT CATAT TAGAT CATAT CATAT CATAT CATAT CATAT CGTAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
** * **
24031512 CATAT CAGGT TATAT TGTAT CATAT CATAT C
1 CATAT CATAT CATAT CATAT CATAT CATAT C
24031543 CTACCCCCAT
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
5 62 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.41
Consensus pattern (5 bp):
CATAT
Found at i:24033022 original size:3 final size:3
Alignment explanation
Indices: 24033014--24033064 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
24033004 ATGGATGTAT
24033014 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24033062 ATA
1 ATA
24033065 GTGGATCATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24033107 original size:13 final size:13
Alignment explanation
Indices: 24033085--24033118 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
24033075 CAAATTAAAC
24033085 AAAGAAAAGAAAAG
1 AAAGAAAAG-AAAG
24033099 AAA-AAAAGAAAG
1 AAAGAAAAGAAAG
24033111 AAAGAAAA
1 AAAGAAAA
24033119 TGAGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.37
13 9 0.47
14 3 0.16
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAG
Found at i:24040028 original size:21 final size:21
Alignment explanation
Indices: 24040002--24040054 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
24039992 CATTGTTTCT
* * *
24040002 AATCTCACTGCTACAGTATCC
1 AATCTCACCGCTACAATAACC
*
24040023 AATCTCACCGCTACAATAACT
1 AATCTCACCGCTACAATAACC
24040044 AATCTCACCGC
1 AATCTCACCGC
24040055 CACCACTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:24044210 original size:41 final size:41
Alignment explanation
Indices: 24044131--24044212 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
24044121 AGACCAATTT
* *
24044131 AATTGGATCAATCATTGTACGATTAATCATACAGTTTATTC
1 AATTAGATCAATCATTGTACGATTAATCATACAATTTATTC
** *
24044172 AATTAGATCAATGGTTGTACGATTAAT-GTCACAATTTATTC
1 AATTAGATCAATCATTGTACGATTAATCAT-ACAATTTATTC
24044213 GATCATGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.03
41 34 0.97
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (41 bp):
AATTAGATCAATCATTGTACGATTAATCATACAATTTATTC
Found at i:24044693 original size:41 final size:41
Alignment explanation
Indices: 24044631--24044720 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
24044621 ACATGGACTG
* *
24044631 ATTCAATTGGATCAATGATTGTACAGTTAAT-TATACAATTT
1 ATTCAATTGGATCAATGATTGTACAATTAATGT-CACAATTT
*
24044672 ATTCAATTGGATCAATTATTGTACAATTAATGTCACAATTT
1 ATTCAATTGGATCAATGATTGTACAATTAATGTCACAATTT
24044713 ATTCAATT
1 ATTCAATT
24044721 ATGCTAGTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 44 0.98
42 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (41 bp):
ATTCAATTGGATCAATGATTGTACAATTAATGTCACAATTT
Found at i:24045076 original size:501 final size:500
Alignment explanation
Indices: 24043920--24045513 Score: 2047
Period size: 501 Copynumber: 3.2 Consensus size: 500
24043910 TACTCTTCAA
* * *
24043920 GTTAGTACATTCGTACATAGATCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATTTG
1 GTTAGTACATTCGTATATAGACCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATTAG
* * ** * *
24043985 TAGTTAG-GG--TGCATAATTGATAAATACTCTTAAATGGATGACAA-ACGTAAAATTAAACATT
66 TAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCA-AATATTTGAAATTAAACATA
* * * * *
24044046 GATGGTCCAAAATTTTGATATATTTCACTATATGATAATGAATTCCAAA-ATGTATGCTCAATGT
130 GGTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAATGT
* * * * * *
24044110 TGTGTTTACATAGACCAATTTAATTGGATCAATCATTGTACGATTAATCATACAGTTTATTCAAT
195 AGTGTTTACATGGACCAATTCAATTGGATCAATGATTGTACGATTAATTATACAATTTATTCAAT
* * * * *
24044175 TAGATCAATGGTTGTACGATTAATGTCACAATTTATTCGATCATGCTAACTAATAATTAGAGGAA
260 TGGATCAATGATTGTACAATTAATGTCACAATTTATTCGATTATG----CTAGTAATTAGAGGAA
* * ** ** **
24044240 GATACAATTGATCAATACTCTTAAAAATACCTATACACTACAATGACATTATTTTCATACATAGA
321 TATACAATTGATCAATACTTTTAAAAATATTTATACACTACAATGTTATTACCTTCATACATAGA
* * * * *
24044305 TTCATTCAATTAAATCAATGATTGTACAATTATTGTCATAACTCATTCAACTACATTGGA-AATT
386 TTCATTCAATTAAATCAATGATTGTACAATTAATGACATAACTCATTCAATTACGTT-AATAATT
* * * * **
24044369 AGAGAAATGAAAAAGTGATC-ATGACTTTTCAAATTACTCATACACCACAAT
450 AGAGAAATGTACAATTGATCAAT-ACTTTTTAAATTACTTGTACACCACAAT
* * ** * * * *
24044420 GCTAGTACATTTGTATATAGACATGATTCAATTAGTTCAATGTCATTATCATTCAATTACATAAG
1 GTTAGTACATTCGTATATAGACCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATTAG
* *
24044485 TAGTTAGAGGAATGCATAAGTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAACATCG
66 TAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAACATAG
* * * *
24044550 GTAGTCCAAAGTTTTGATATATTTCACTATATGATATTGCATTCTAAACATGTATAATCAAAGTA
131 GTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAATGTA
**
24044615 GTGTTTACATGGACTGATTCAATTGGATCAATGATTGTAC-AGTTAATTATACAATTTATTCAAT
196 GTGTTTACATGGACCAATTCAATTGGATCAATGATTGTACGA-TTAATTATACAATTTATTCAAT
* *
24044679 TGGATCAATTATTGTACAATTAATGTCACAATTTATTCAATTATGCTAGTAATTAGAGGAATATA
260 TGGATCAATGATTGTACAATTAATGTCACAATTTATTCGATTATGCTAGTAATTAGAGGAATATA
*
24044744 CAATTGATCAATACTTTTAAAAATATTTATACACTACAACGTTATTACCTTCATACATAGATTCA
325 CAATTGATCAATACTTTTAAAAATATTTATACACTACAATGTTATTACCTTCATACATAGATTCA
* *
24044809 TTCGATTAAATCAATAATTGTACAATTAATGACATAACTCATTCAATTACGTTAATAATTAGAGA
390 TTCAATTAAATCAATGATTGTACAATTAATGACATAACTCATTCAATTACGTTAATAATTAGAGA
* * * *
24044874 AACGTGCAATTCATCAATACTTTTTTAAATTACTTGTATACCACAAT
455 AATGTACAATTGATCAATAC-TTTTTAAATTACTTGTACACCACAAT
* * * * * *
24044921 GTTAGTACATTCGTATATAAACCCAATCCAATTGGCTCAATGTCATAATCACTCAATTACATTAG
1 GTTAGTACATTCGTATATAGACCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATTAG
* * * *
24044986 TATTTAGAGGAATGCATAATTGATAAATACCCTTAAATTGATCAAATATTTGAAGTTAAATATAG
66 TAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAACATAG
*
24045051 GTGGTCCAATGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAATGTT
131 GTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAATG-T
** *
24045116 A-TGTTTACATGGACCAATTCAATTACATCAATGATTGTATGATTAATTATACAATTTATTCAAT
195 AGTGTTTACATGGACCAATTCAATTGGATCAATGATTGTACGATTAATTATACAATTTATTCAAT
* * ** * *
24045180 TGGATCTATGATTGTACAATTAATGTCACAATTTATTTGATTACACTAGTAATTAGTGGAATAGA
260 TGGATCAATGATTGTACAATTAATGTCACAATTTATTCGATTATGCTAGTAATTAGAGGAATATA
* * * *
24045245 CAATTGATCAATACTTTTAAAAGTATTTATGCACTACAATGTTATTACCTTTATACATAGATTTA
325 CAATTGATCAATACTTTTAAAAATATTTATACACTACAATGTTATTACCTTCATACATAGATTCA
* * * *
24045310 TTCAATTAGATCAAGGATTGTACAATTAAT-ATCATAACTCATGCAATTATGTTAATAATTAGAG
390 TTCAATTAAATCAATGATTGTACAATTAATGA-CATAACTCATTCAATTACGTTAATAATTAGAG
* * * *
24045374 AAATGTACAATTGGTTAATACTTTTTGAATTACTTGTACACCATAAT
454 AAATGTACAATTGATCAATACTTTTTAAATTACTTGTACACCACAAT
* * * * * * *
24045421 GTTAGTACATTCATATATAGATCCGATTTAATTGGTTCAATGCCATAAGCATCCAATTACGTTTG
1 GTTAGTACATTCGTATATAGACCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATTAG
24045486 TAGTTAGAGGAATGCATAATTGATAAAT
66 TAGTTAGAGGAATGCATAATTGATAAAT
24045514 TGTGACGCCC
Statistics
Matches: 945, Mismatches: 137, Indels: 24
0.85 0.12 0.02
Matches are distributed among these distances:
499 1 0.00
500 306 0.32
501 441 0.47
502 5 0.01
503 86 0.09
504 106 0.11
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (500 bp):
GTTAGTACATTCGTATATAGACCCGATTCAATTGGTTCAATGTCATAAGCATTCAATTACATTAG
TAGTTAGAGGAATGCATAATTGATAAATACTCTTAAATTGATCAAATATTTGAAATTAAACATAG
GTGGTCCAAAGTTTTGATATATTTCACTATATGATATTGAATTCTAAACATGTATACTCAATGTA
GTGTTTACATGGACCAATTCAATTGGATCAATGATTGTACGATTAATTATACAATTTATTCAATT
GGATCAATGATTGTACAATTAATGTCACAATTTATTCGATTATGCTAGTAATTAGAGGAATATAC
AATTGATCAATACTTTTAAAAATATTTATACACTACAATGTTATTACCTTCATACATAGATTCAT
TCAATTAAATCAATGATTGTACAATTAATGACATAACTCATTCAATTACGTTAATAATTAGAGAA
ATGTACAATTGATCAATACTTTTTAAATTACTTGTACACCACAAT
Found at i:24045202 original size:41 final size:41
Alignment explanation
Indices: 24045132--24045216 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 41
24045122 ACATGGACCA
** *
24045132 ATTCAATTACATCAATGATTGTATGATTAAT-TATACAATTT
1 ATTCAATTACATCAATGATTGTACAATTAATGT-CACAATTT
** *
24045173 ATTCAATTGGATCTATGATTGTACAATTAATGTCACAATTT
1 ATTCAATTACATCAATGATTGTACAATTAATGTCACAATTT
24045214 ATT
1 ATT
24045217 TGATTACACT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 36 0.97
42 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (41 bp):
ATTCAATTACATCAATGATTGTACAATTAATGTCACAATTT
Found at i:24048475 original size:42 final size:42
Alignment explanation
Indices: 24048416--24048517 Score: 141
Period size: 42 Copynumber: 2.4 Consensus size: 42
24048406 TTTACATTAA
** * * *
24048416 TGCTCACACGTGCTGTGGGTCAGAATATAAGCTACACGATGT
1 TGCTCACACAAGCTGTGGGTCAAAATATAAGCTACACAATGC
*
24048458 TGCTCAGACAAGCTGTGGGTCAAAATATAAGCTACACAATGC
1 TGCTCACACAAGCTGTGGGTCAAAATATAAGCTACACAATGC
*
24048500 TGCTTACACAAGCTGTGG
1 TGCTCACACAAGCTGTGG
24048518 TGAATAGTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (42 bp):
TGCTCACACAAGCTGTGGGTCAAAATATAAGCTACACAATGC
Found at i:24049007 original size:13 final size:13
Alignment explanation
Indices: 24048986--24049016 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
24048976 CACGGGCGTA
*
24048986 TGGCTTGGCCATG
1 TGGCATGGCCATG
24048999 TGGCATGGCCATG
1 TGGCATGGCCATG
24049012 TGGCA
1 TGGCA
24049017 CAAGTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.39, T:0.26
Consensus pattern (13 bp):
TGGCATGGCCATG
Found at i:24051235 original size:41 final size:41
Alignment explanation
Indices: 24051174--24051324 Score: 160
Period size: 41 Copynumber: 3.7 Consensus size: 41
24051164 CATAATTTAA
*
24051174 CATATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CATA-TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
* * *
24051216 CATATCACTGGCACGTAGCCTGCTAGGTTTATAACCTGATT
1 CATATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
** ** ** **
24051257 CCGATCACCGGCACTTAGCCTGCTAGATTTATAGTCTGAAA
1 CATATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
* *
24051298 AAT-TCACCGGCATTTAGCCTGCTAGGC
1 CATATCACCGGCACTTAGCCTGCTAGGC
24051325 GCTTAGCCTG
Statistics
Matches: 90, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 21 0.23
41 65 0.72
42 4 0.04
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (41 bp):
CATATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT
Found at i:24051336 original size:40 final size:40
Alignment explanation
Indices: 24051177--24051343 Score: 108
Period size: 41 Copynumber: 4.1 Consensus size: 40
24051167 AATTTAACAT
***
24051177 ATTCACCGGCACTTAGCCTGCTAG-GCTTATAGCCTGATTC
1 ATTCACCGGCACTTAGCCTGCTAGAGC-TATAGCCTGAAAA
* * * * ***
24051217 ATATCACTGGCACGTAGCCTGCTAG-GTTTATAACCTGATTCCG
1 AT-TCACCGGCACTTAGCCTGCTAGAG-CTATAGCCTGA--AAA
** *
24051260 A-TCACCGGCACTTAGCCTGCTAGATTTATAGTCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTAGAGCTATAGCCTGAAAA
* *
24051299 ATTCACCGGCATTTAGCCTGCTAGGCGCT-TAGCCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTA-GAGCTATAGCCTGAAAA
*
24051339 TTTCA
1 ATTCA
24051344 ATTTCACAGA
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.01
40 36 0.36
41 61 0.62
43 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (40 bp):
ATTCACCGGCACTTAGCCTGCTAGAGCTATAGCCTGAAAA
Found at i:24052546 original size:16 final size:17
Alignment explanation
Indices: 24052525--24052557 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
24052515 TGCCCCTAAT
24052525 ATTTACACTTT-TTGCA
1 ATTTACACTTTATTGCA
*
24052541 ATTTACTCTTTATTGCA
1 ATTTACACTTTATTGCA
24052558 TAAAACATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.52
Consensus pattern (17 bp):
ATTTACACTTTATTGCA
Found at i:24056882 original size:12 final size:13
Alignment explanation
Indices: 24056865--24056893 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
24056855 AGGTTAGACT
24056865 TTTATTTATT-TA
1 TTTATTTATTATA
24056877 TTTATTTATTATA
1 TTTATTTATTATA
24056890 TTTA
1 TTTA
24056894 ATATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTATTATA
Found at i:24057471 original size:49 final size:49
Alignment explanation
Indices: 24057399--24057492 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
24057389 TGCTATGCAA
* * *
24057399 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCAGTATTTATACAT
1 TGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACAT
*
24057448 TGCTAAAATTAGTCTTCTACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
24057493 CCCTTCTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.43
Consensus pattern (49 bp):
TGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACAT
Found at i:24058912 original size:44 final size:44
Alignment explanation
Indices: 24058861--24058947 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
24058851 TCATATTTCA
*
24058861 TTTCTCATCTCATAATCATTTCTTATATTTGCCATTTCAATATT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATATT
* * * *
24058905 TTTCTCATCTCATATTTATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
24058948 CAATTATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.23, C:0.22, G:0.01, T:0.54
Consensus pattern (44 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATATT
Found at i:24071801 original size:25 final size:25
Alignment explanation
Indices: 24071715--24071798 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
24071705 TGAGCCCTTT
24071715 TCCAATTGGTTTTCGTCATTTCTAG
1 TCCAATTGGTTTTCGTCATTTCTAG
** *
24071740 TCCAATTAATTTTCGTCA--TCGAG
1 TCCAATTGGTTTTCGTCATTTCTAG
* **
24071763 T-TAA-TGGTTTTTTTCATTTCTAG
1 TCCAATTGGTTTTCGTCATTTCTAG
24071786 TCCAATTGGTTTT
1 TCCAATTGGTTTT
24071799 TTTTTTTTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
21 8 0.18
22 2 0.04
23 10 0.22
24 2 0.04
25 23 0.51
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (25 bp):
TCCAATTGGTTTTCGTCATTTCTAG
Found at i:24072693 original size:202 final size:201
Alignment explanation
Indices: 24072291--24072696 Score: 548
Period size: 202 Copynumber: 2.0 Consensus size: 201
24072281 TTTTCACCCA
* * **
24072291 TCAAACATCATGGTCACCTCTCTTTCTTCCCATATCGGTTTAAAACTATCCACCCATTCTTTTAT
1 TCAAACATAATGGTCACCTCTCTTTCTTCCCATACCAATTTAAAACTATCCACCCATTCTTTTAT
* *
24072356 TTCCTTATACTACTCTTCCAAATACACTTCTGCGACCTTAGAAGCTAAAGGTCCCAAAATTGATT
66 TTCCTTATACTACTCTTCCAAATACACTTCTACGACCTTAGAAGATAAAGGTCCCAAAATTGATT
* ** * **
24072421 TTCCCAATTTTGCTGCAGCTTGAAGTACAAGTGGTTAAAATGGTGACTTTGTAATTCTTGAAGGC
131 TTCCCAATTTTCCTGCAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACAATTCTTGAAGGC
24072486 AAAGCT
196 AAAGCT
*
24072492 TCAAACATAATGGTCACC-CTTCTTTCTTCCCATACCAATTTAAATCTAT-CAGCCCATTCTTTT
1 TCAAACATAATGGTCACCTC-TCTTTCTTCCCATACCAATTTAAAACTATCCA-CCCATTCTTTT
* * * * * *
24072555 ATTTCCTTATACTCCTCTTCCAAATATACTTCTTATGACCTTATAAGATGAAGGTCTCAAAATTG
64 ATTTCCTTATACTACTCTTCCAAATACACTTC-TACGACCTTAGAAGATAAAGGTCCCAAAATTG
* * * *
24072620 GTTTTCCC-ATTTCTCCTGTAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACCATTCTTGC
128 ATTTTCCCAATTT-TCCTGCAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACAATTCTTGA
24072684 AGGCAAAGCT
192 AGGCAAAGCT
24072694 TCA
1 TCA
24072697 TGCAGTATCA
Statistics
Matches: 178, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
200 3 0.02
201 87 0.49
202 88 0.49
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (201 bp):
TCAAACATAATGGTCACCTCTCTTTCTTCCCATACCAATTTAAAACTATCCACCCATTCTTTTAT
TTCCTTATACTACTCTTCCAAATACACTTCTACGACCTTAGAAGATAAAGGTCCCAAAATTGATT
TTCCCAATTTTCCTGCAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACAATTCTTGAAGGC
AAAGCT
Found at i:24074058 original size:22 final size:22
Alignment explanation
Indices: 24074032--24074085 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
24074022 AATAAAATTT
24074032 AACTTACCTCTGTAAGTTATCA
1 AACTTACCTCTGTAAGTTATCA
24074054 AACTTACCTCTGTAAGTTATCA
1 AACTTACCTCTGTAAGTTATCA
24074076 AACTTACCTC
1 AACTTACCTC
24074086 AACACATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.35
Consensus pattern (22 bp):
AACTTACCTCTGTAAGTTATCA
Found at i:24074226 original size:22 final size:22
Alignment explanation
Indices: 24074200--24074266 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
24074190 TGCTCTATTG
*
24074200 AACAAAGAGCACTAAAGTGCTA
1 AACAAAGAGCACTAATGTGCTA
*
24074222 TACAAAGAGCA-TGAATGTGCTA
1 AACAAAGAGCACT-AATGTGCTA
**
24074244 AACGGAGAGCACTAATGTGCTA
1 AACAAAGAGCACTAATGTGCTA
24074266 A
1 A
24074267 TAATCAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.18
Consensus pattern (22 bp):
AACAAAGAGCACTAATGTGCTA
Found at i:24076154 original size:16 final size:16
Alignment explanation
Indices: 24076133--24076166 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
24076123 TAAGTATAAC
24076133 TTAAAAAT-TTTTTGAT
1 TTAAAAATATTTTT-AT
24076149 TTAAAAATATTTTTAT
1 TTAAAAATATTTTTAT
24076165 TT
1 TT
24076167 GATATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTAAAAATATTTTTAT
Found at i:24076928 original size:8 final size:8
Alignment explanation
Indices: 24076915--24076942 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
24076905 ATGAAAAACC
24076915 AAACCCGA
1 AAACCCGA
24076923 AAACCCGA
1 AAACCCGA
24076931 AAACCCGA
1 AAACCCGA
24076939 AAAC
1 AAAC
24076943 AAAGAACCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.36, G:0.11, T:0.00
Consensus pattern (8 bp):
AAACCCGA
Found at i:24093412 original size:29 final size:30
Alignment explanation
Indices: 24093369--24093427 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
24093359 GAATTGGATC
* * *
24093369 AAATCAAAATTTTATGTATAAAATTGCACA
1 AAATCAAAAGTTTATATATAAAATTACACA
*
24093399 AAATC-AAAGTTTATATATACAATTACACA
1 AAATCAAAAGTTTATATATAAAATTACACA
24093428 TTAAAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (30 bp):
AAATCAAAAGTTTATATATAAAATTACACA
Found at i:24094730 original size:23 final size:23
Alignment explanation
Indices: 24094686--24094730 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
24094676 TTAATTAAAA
* * *
24094686 TAATATAGTATAACTAAAAAATG
1 TAATATAATAAAAATAAAAAATG
*
24094709 TAATATAATAAAAATAATAAAT
1 TAATATAATAAAAATAAAAAAT
24094731 TTCTCAACTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (23 bp):
TAATATAATAAAAATAAAAAATG
Done.